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Volumn 109, Issue 8, 2012, Pages 3184-3189

Integrated cross-species transcriptional network analysis of metastatic susceptibility

Author keywords

Gene expression; Mouse models

Indexed keywords

ESTROGEN RECEPTOR;

EID: 84863157850     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1117872109     Document Type: Article
Times cited : (45)

References (44)
  • 1
    • 0034680102 scopus 로고    scopus 로고
    • Molecular portraits of human breast tumours
    • Perou CM, et al. (2000) Molecular portraits of human breast tumours. Nature 406:747-752.
    • (2000) Nature , vol.406 , pp. 747-752
    • Perou, C.M.1
  • 2
    • 36349025365 scopus 로고    scopus 로고
    • Gene arrays for diagnosis, prognosis and treatment of breast cancer metastasis
    • Driouch K, Landemaine T, Sin S, Wang S, Lidereau R (2007) Gene arrays for diagnosis, prognosis and treatment of breast cancer metastasis. Clin Exp Metastasis 24:575-585.
    • (2007) Clin Exp Metastasis , vol.24 , pp. 575-585
    • Driouch, K.1    Landemaine, T.2    Sin, S.3    Wang, S.4    Lidereau, R.5
  • 3
    • 13444282534 scopus 로고    scopus 로고
    • Outcome signature genes in breast cancer: Is there a unique set?
    • Ein-Dor L, Kela I, Getz G, Givol D, Domany E (2005) Outcome signature genes in breast cancer: Is there a unique set? Bioinformatics 21:171-178.
    • (2005) Bioinformatics , vol.21 , pp. 171-178
    • Ein-Dor, L.1    Kela, I.2    Getz, G.3    Givol, D.4    Domany, E.5
  • 4
    • 33645825183 scopus 로고    scopus 로고
    • Thousands of samples are needed to generate a robust gene list for predicting outcome in cancer
    • Ein-Dor L, Zuk O, Domany E (2006) Thousands of samples are needed to generate a robust gene list for predicting outcome in cancer. Proc Natl Acad Sci USA 103:5923-5928.
    • (2006) Proc Natl Acad Sci USA , vol.103 , pp. 5923-5928
    • Ein-Dor, L.1    Zuk, O.2    Domany, E.3
  • 5
    • 22844446947 scopus 로고    scopus 로고
    • An integrative genomics approach to infer causal associations between gene expression and disease
    • Schadt EE, et al. (2005) An integrative genomics approach to infer causal associations between gene expression and disease. Nat Genet 37:710-717.
    • (2005) Nat Genet , vol.37 , pp. 710-717
    • Schadt, E.E.1
  • 6
    • 63649143888 scopus 로고    scopus 로고
    • Genetic architecture of mouse skin inflammation and tumour susceptibility
    • Quigley DA, et al. (2009) Genetic architecture of mouse skin inflammation and tumour susceptibility. Nature 458:505-508.
    • (2009) Nature , vol.458 , pp. 505-508
    • Quigley, D.A.1
  • 8
    • 13844310310 scopus 로고    scopus 로고
    • Gene-expression profiles to predict distant metastasis of lymph-node-negative primary breast cancer
    • Wang Y, et al. (2005) Gene-expression profiles to predict distant metastasis of lymph-node-negative primary breast cancer. Lancet 365:671-679.
    • (2005) Lancet , vol.365 , pp. 671-679
    • Wang, Y.1
  • 9
    • 44849101184 scopus 로고    scopus 로고
    • The humoral immune system has a key prognostic impact in node-negative breast cancer
    • Schmidt M, et al. (2008) The humoral immune system has a key prognostic impact in node-negative breast cancer. Cancer Res 68:5405-5413.
    • (2008) Cancer Res , vol.68 , pp. 5405-5413
    • Schmidt, M.1
  • 10
    • 0026587657 scopus 로고
    • Induction of mammary tumors by expression of polyomavirus middle T oncogene: A transgenic mouse model for metastatic disease
    • Guy CT, Cardiff RD, Muller WJ (1992) Induction of mammary tumors by expression of polyomavirus middle T oncogene: A transgenic mouse model for metastatic disease. Mol Cell Biol 12:954-961.
    • (1992) Mol Cell Biol , vol.12 , pp. 954-961
    • Guy, C.T.1    Cardiff, R.D.2    Muller, W.J.3
  • 11
    • 0035893391 scopus 로고    scopus 로고
    • Predisposition to efficient mammary tumor metastatic progression is linked to the breast cancer metastasis suppressor gene Brms1
    • Hunter KW, et al. (2001) Predisposition to efficient mammary tumor metastatic progression is linked to the breast cancer metastasis suppressor gene Brms1. Cancer Res 61:8866-8872.
    • (2001) Cancer Res , vol.61 , pp. 8866-8872
    • Hunter, K.W.1
  • 12
    • 19944401861 scopus 로고    scopus 로고
    • Caffeine suppresses metastasis in a transgenic mouse model: A prototype molecule for prophylaxis of metastasis
    • Yang H, et al. (2004) Caffeine suppresses metastasis in a transgenic mouse model: A prototype molecule for prophylaxis of metastasis. Clin Exp Metastasis 21:719-735.
    • (2004) Clin Exp Metastasis , vol.21 , pp. 719-735
    • Yang, H.1
  • 13
    • 77049120351 scopus 로고    scopus 로고
    • Network module detection: Affinity search technique with the multi-node topological overlap measure
    • Li A, Horvath S (2009) Network module detection: Affinity search technique with the multi-node topological overlap measure. BMC Res Notes 2:142.
    • (2009) BMC Res Notes , vol.2 , pp. 142
    • Li, A.1    Horvath, S.2
  • 14
    • 0037137519 scopus 로고    scopus 로고
    • A gene-expression signature as a predictor of survival in breast cancer
    • van de Vijver MJ, et al. (2002) A gene-expression signature as a predictor of survival in breast cancer. N Engl J Med 347:1999-2009.
    • (2002) N Engl J Med , vol.347 , pp. 1999-2009
    • Van De Vijver, M.J.1
  • 15
    • 7744230752 scopus 로고    scopus 로고
    • Phosphorylation of Cdc20 by Bub1 provides a catalytic mechanism for APC/C inhibition by the spindle checkpoint
    • Tang Z, Shu H, Oncel D, Chen S, Yu H (2004) Phosphorylation of Cdc20 by Bub1 provides a catalytic mechanism for APC/C inhibition by the spindle checkpoint. Mol Cell 16:387-397.
    • (2004) Mol Cell , vol.16 , pp. 387-397
    • Tang, Z.1    Shu, H.2    Oncel, D.3    Chen, S.4    Yu, H.5
  • 16
    • 34247355517 scopus 로고    scopus 로고
    • Ubiquitination by the anaphase-promoting complex drives spindle checkpoint inactivation
    • Reddy SK, Rape M, Margansky WA, Kirschner MW (2007) Ubiquitination by the anaphase-promoting complex drives spindle checkpoint inactivation. Nature 446:921-925.
    • (2007) Nature , vol.446 , pp. 921-925
    • Reddy, S.K.1    Rape, M.2    Margansky, W.A.3    Kirschner, M.W.4
  • 17
    • 2942558349 scopus 로고    scopus 로고
    • Explant-cell culture of primary mammary tumors from MMTV-c-Myc transgenic mice
    • Pei XF, et al. (2004) Explant-cell culture of primary mammary tumors from MMTV-c-Myc transgenic mice. In Vitro Cell Dev Biol Anim 40:14-21.
    • (2004) In Vitro Cell Dev Biol Anim , vol.40 , pp. 14-21
    • Pei, X.F.1
  • 18
    • 58249102851 scopus 로고    scopus 로고
    • The origins of breast cancer prognostic gene expression profiles
    • Lukes L, Crawford NP, Walker R, Hunter KW (2009) The origins of breast cancer prognostic gene expression profiles. Cancer Res 69:310-318.
    • (2009) Cancer Res , vol.69 , pp. 310-318
    • Lukes, L.1    Crawford, N.P.2    Walker, R.3    Hunter, K.W.4
  • 19
    • 44049088029 scopus 로고    scopus 로고
    • Bromodomain 4 activation predicts breast cancer survival
    • Crawford NP, et al. (2008) Bromodomain 4 activation predicts breast cancer survival. Proc Natl Acad Sci USA 105:6380-6385.
    • (2008) Proc Natl Acad Sci USA , vol.105 , pp. 6380-6385
    • Crawford, N.P.1
  • 20
    • 79954603178 scopus 로고    scopus 로고
    • Deletion of the proline-rich region of the murine metastasis susceptibility gene Brd4 promotes epithelial-to-mesenchymal transition- and stem cell-like conversion
    • Alsarraj J, et al. (2011) Deletion of the proline-rich region of the murine metastasis susceptibility gene Brd4 promotes epithelial-to-mesenchymal transition- and stem cell-like conversion. Cancer Res 71:3121-3131.
    • (2011) Cancer Res , vol.71 , pp. 3121-3131
    • Alsarraj, J.1
  • 21
    • 18244409687 scopus 로고    scopus 로고
    • Gene expression profiling predicts clinical outcome of breast cancer
    • van 't Veer LJ, et al. (2002) Gene expression profiling predicts clinical outcome of breast cancer. Nature 415:530-536.
    • (2002) Nature , vol.415 , pp. 530-536
    • Van 'T Veer, L.J.1
  • 22
    • 33144462268 scopus 로고    scopus 로고
    • Gene expression profiling in breast cancer: Understanding the molecular basis of histologic grade to improve prognosis
    • Sotiriou C, et al. (2006) Gene expression profiling in breast cancer: Understanding the molecular basis of histologic grade to improve prognosis. J Natl Cancer Inst 98:262-272.
    • (2006) J Natl Cancer Inst , vol.98 , pp. 262-272
    • Sotiriou, C.1
  • 23
    • 79955879494 scopus 로고    scopus 로고
    • Controllability of complex networks
    • Liu YY, Slotine JJ, Barabási AL (2011) Controllability of complex networks. Nature 473:167-173.
    • (2011) Nature , vol.473 , pp. 167-173
    • Liu, Y.Y.1    Slotine, J.J.2    Barabási, A.L.3
  • 24
    • 0036079155 scopus 로고    scopus 로고
    • A bioinformatics-based strategy identifies c-Myc and Cdc25A as candidates for the Apmt mammary tumor latency modifiers
    • Cozma D, et al. (2002) A bioinformatics-based strategy identifies c-Myc and Cdc25A as candidates for the Apmt mammary tumor latency modifiers. Genome Res 12:969-975.
    • (2002) Genome Res , vol.12 , pp. 969-975
    • Cozma, D.1
  • 25
    • 37349014800 scopus 로고    scopus 로고
    • Rrp1b, a new candidate susceptibility gene for breast cancer progression and metastasis
    • Crawford NP, et al. (2007) Rrp1b, a new candidate susceptibility gene for breast cancer progression and metastasis. PLoS Genet 3:e214.
    • (2007) PLoS Genet , vol.3
    • Crawford, N.P.1
  • 26
    • 0036724194 scopus 로고    scopus 로고
    • A mammalian bromodomain protein, brd4, interacts with replication factor C and inhibits progression to S phase
    • Maruyama T, et al. (2002) A mammalian bromodomain protein, brd4, interacts with replication factor C and inhibits progression to S phase. Mol Cell Biol 22:6509-6520.
    • (2002) Mol Cell Biol , vol.22 , pp. 6509-6520
    • Maruyama, T.1
  • 27
    • 79959483607 scopus 로고    scopus 로고
    • The Brd4 extraterminal domain confers transcription activation independent of pTEFb by recruiting multiple proteins, including NSD3
    • Rahman S, et al. (2011) The Brd4 extraterminal domain confers transcription activation independent of pTEFb by recruiting multiple proteins, including NSD3. Mol Cell Biol 31:2641-2652.
    • (2011) Mol Cell Biol , vol.31 , pp. 2641-2652
    • Rahman, S.1
  • 28
    • 70249110072 scopus 로고    scopus 로고
    • Human Ccr4-Not complexes contain variable deadenylase subunits
    • Lau NC, et al. (2009) Human Ccr4-Not complexes contain variable deadenylase subunits. Biochem J 422:443-453.
    • (2009) Biochem J , vol.422 , pp. 443-453
    • Lau, N.C.1
  • 30
    • 77954959108 scopus 로고    scopus 로고
    • A genome-wide linkage scan reveals CD53 as an important regulator of innate TNF-alpha levels
    • Bos SD, et al. (2010) A genome-wide linkage scan reveals CD53 as an important regulator of innate TNF-alpha levels. Eur J Hum Genet 18:953-959.
    • (2010) Eur J Hum Genet , vol.18 , pp. 953-959
    • Bos, S.D.1
  • 31
    • 43249121177 scopus 로고    scopus 로고
    • Stromal gene expression predicts clinical outcome in breast cancer
    • Finak G, et al. (2008) Stromal gene expression predicts clinical outcome in breast cancer. Nat Med 14:518-527.
    • (2008) Nat Med , vol.14 , pp. 518-527
    • Finak, G.1
  • 32
    • 34648829133 scopus 로고    scopus 로고
    • An immune response gene expression module identifies a good prognosis subtype in estrogen receptor negative breast cancer
    • Teschendorff AE, Miremadi A, Pinder SE, Ellis IO, Caldas C (2007) An immune response gene expression module identifies a good prognosis subtype in estrogen receptor negative breast cancer. Genome Biol 8:R157.
    • (2007) Genome Biol , vol.8
    • Teschendorff, A.E.1    Miremadi, A.2    Pinder, S.E.3    Ellis, I.O.4    Caldas, C.5
  • 33
    • 79954603178 scopus 로고    scopus 로고
    • Deletion of the proline-rich region of the murine metastasis susceptibility gene Brd4 promotes epithelial-to-mesenchymal transition- and stem cell-like conversion
    • Alsarraj J, et al. (2011) Deletion of the proline-rich region of the murine metastasis susceptibility gene Brd4 promotes epithelial-to-mesenchymal transition- and stem cell-like conversion. Cancer Res 71:3121-3131.
    • (2011) Cancer Res , vol.71 , pp. 3121-3131
    • Alsarraj, J.1
  • 34
    • 44449099054 scopus 로고    scopus 로고
    • The diasporin pathway: A tumor progression-related transcriptional network that predicts breast cancer survival
    • Crawford NP, et al. (2008) The diasporin pathway: A tumor progression-related transcriptional network that predicts breast cancer survival. Clin Exp Metastasis 25:357-369.
    • (2008) Clin Exp Metastasis , vol.25 , pp. 357-369
    • Crawford, N.P.1
  • 35
    • 25844511053 scopus 로고    scopus 로고
    • Sipa1 is a candidate for underlying the metastasis efficiency modifier locus Mtes1
    • Park YG, et al. (2005) Sipa1 is a candidate for underlying the metastasis efficiency modifier locus Mtes1. Nat Genet 37:1055-1062.
    • (2005) Nat Genet , vol.37 , pp. 1055-1062
    • Park, Y.G.1
  • 36
    • 77449152122 scopus 로고    scopus 로고
    • Distinct inherited metastasis susceptibility exists for different breast cancer subtypes: A prognosis study
    • Hsieh SM, Look MP, Sieuwerts AM, Foekens JA, Hunter KW (2009) Distinct inherited metastasis susceptibility exists for different breast cancer subtypes: A prognosis study. Breast Cancer Res 11:R75.
    • (2009) Breast Cancer Res , vol.11
    • Hsieh, S.M.1    Look, M.P.2    Sieuwerts, A.M.3    Foekens, J.A.4    Hunter, K.W.5
  • 37
    • 14644441018 scopus 로고    scopus 로고
    • The Collaborative Cross, a community resource for the genetic analysis of complex traits
    • Complex Trait Consortium
    • Churchill GA, et al.; Complex Trait Consortium (2004) The Collaborative Cross, a community resource for the genetic analysis of complex traits. Nat Genet 36:1133-1137.
    • (2004) Nat Genet , vol.36 , pp. 1133-1137
    • Churchill, G.A.1
  • 38
    • 32544456277 scopus 로고    scopus 로고
    • Metastasis predictive signature profiles pre-exist in normal tissues
    • Yang H, et al. (2005) Metastasis predictive signature profiles pre-exist in normal tissues. Clin Exp Metastasis 22:593-603.
    • (2005) Clin Exp Metastasis , vol.22 , pp. 593-603
    • Yang, H.1
  • 39
    • 33748486517 scopus 로고    scopus 로고
    • AceView: A comprehensive cDNA-supported gene and transcripts annotation
    • Thierry-Mieg D, Thierry-Mieg J (2006) AceView: A comprehensive cDNA-supported gene and transcripts annotation. Genome Biol 7(Suppl 1):S12.1-S12.14.
    • (2006) Genome Biol , vol.7 , Issue.SUPPL. 1
    • Thierry-Mieg, D.1    Thierry-Mieg, J.2
  • 40
    • 0031732094 scopus 로고    scopus 로고
    • A computer program for aligning a cDNA sequence with a genomic DNA sequence
    • Florea L, Hartzell G, Zhang Z, Rubin GM, Miller W (1998) A computer program for aligning a cDNA sequence with a genomic DNA sequence. Genome Res 8:967-974.
    • (1998) Genome Res , vol.8 , pp. 967-974
    • Florea, L.1    Hartzell, G.2    Zhang, Z.3    Rubin, G.M.4    Miller, W.5
  • 42
    • 0348143180 scopus 로고    scopus 로고
    • A random variance model for detection of differential gene expression in small microarray experiments
    • Wright GW, Simon RM (2003) A random variance model for detection of differential gene expression in small microarray experiments. Bioinformatics 19:2448-2455.
    • (2003) Bioinformatics , vol.19 , pp. 2448-2455
    • Wright, G.W.1    Simon, R.M.2
  • 43
    • 60549111634 scopus 로고    scopus 로고
    • WGCNA: An R package for weighted correlation network analysis
    • Langfelder P, Horvath S (2008) WGCNA: An R package for weighted correlation network analysis. BMC Bioinformatics 9:559.
    • (2008) BMC Bioinformatics , vol.9 , pp. 559
    • Langfelder, P.1    Horvath, S.2
  • 44
    • 0242490780 scopus 로고    scopus 로고
    • Cytoscape: A software environment for integrated models of biomolecular interaction networks
    • Shannon P, et al. (2003) Cytoscape: A software environment for integrated models of biomolecular interaction networks. Genome Res 13:2498-2504.
    • (2003) Genome Res , vol.13 , pp. 2498-2504
    • Shannon, P.1


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