Identification of plum and peach seed proteins by nLC-MS/MS via combinatorial peptide ligand libraries

Journal of Proteomics

Volumn 148, Issue , 2016, Pages 105-112

  González García, Estefanía ^a   Marina, María Luisa ^a   García, María Concepción ^a   Righetti, Pier Giorgio ^b   Fasoli, Elisa ^b  

^a UNIVERSITY OF ALCALÁ   (Spain)

^b POLITECNICO DI MILANO   (Italy)

Author keywords

Nano liquid chromatography mass spectrometry; Peach; Plum; Proteomics, combinatorial peptide ligand library; Seed proteins

Indexed keywords

ACETONE; BIOFUEL; HISTONE; SEED STORAGE PROTEIN; VEGETABLE PROTEIN; LIGAND; PLANT PROTEIN;

AMINO ACID SEQUENCE; ANIMAL FOOD; ARTICLE; BEVERAGE; COMBINATORIAL LIBRARY; COMBINATORIAL PEPTIDE LIGAND LIBRARY; CONTROLLED STUDY; HAZARDOUS WASTE SITE; NONHUMAN; PEACH; PLANT SEED; PLUM; POLYACRYLAMIDE GEL ELECTROPHORESIS; PRECIPITATION; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEOMICS; REVERSED PHASE HIGH PERFORMANCE LIQUID CHROMATOGRAPHY; TANDEM MASS SPECTROMETRY; CHEMISTRY; COMBINATORIAL CHEMISTRY; ISOLATION AND PURIFICATION; LIQUID CHROMATOGRAPHY; PEPTIDE LIBRARY; PROCEDURES; RECYCLING;

CHROMATOGRAPHY, LIQUID; COMBINATORIAL CHEMISTRY TECHNIQUES; LIGANDS; PEPTIDE LIBRARY; PLANT PROTEINS; PROTEOMICS; PRUNUS DOMESTICA; PRUNUS PERSICA; RECYCLING; SEEDS; TANDEM MASS SPECTROMETRY;

EID: 84979650258     PISSN: 18743919     EISSN: 18767737     Source Type: Journal    
DOI: 10.1016/j.jprot.2016.07.024     Document Type: Article

References (40)

1. [1] FAOSTAT (Food and Agricultural Organization of the United Nations), http://faostat3.fao.org, 2015 accessed 27.01.2016.
2. [2] Ros, M., Pascual, J.A., Ayuso, M., Morales, A.B., Miralles, J.R., Solera, C., Salidas valorizables de los residuos y subproductos orgánicos de la industria de los transformados de frutas y hortalizas: proyecto Life + Agrowaste. Residuos: Revista Técnica 22 (2012), 28–35.
3. [3] González-García, E., Marina, M.L., García, M.C., Plum (Prunus domestica L.) by-product as a new and cheap source of bioactive peptides: extraction method and peptides characterization. J. Funct. Foods 11 (2014), 428–437.
4. [4] Vásquez-Villanueva, R., Marina, M.L., García, M.C., Revalorization of a peach (Prunus persica (L.) Batsch) byproduct: extraction and characterization of ACE-inhibitory peptides from peach stones. J. Funct. Foods 18 (2015), 137–146.
5. [5] González-García, E., Puchalska, P., Marina, M.L., García, M.C., Fractionation and identification of antioxidant and angiotensin-converting enzyme-inhibitory peptides obtained from plum (Prunus domestica L.) stones. J. Funct. Foods 19 (2015), 376–384.
6. [6] Vásquez-Villanueva, R., Marina, M.L., García, M.C., Identification by hydrophilic interaction and reversed-phase liquid chromatography-tandem mass spectrometry of peptides with antioxidant capacity in food residues. J. Chromatogr. A 1428:1428 (2016), 185–192.
7. [7] Wang, W., Tai, F., Chen, S., Optimizing protein extraction from plant tissues for enhanced proteomics analysis. J. Sep. Sci. 31 (2008), 2032–2039.
8. [8] Wu, X., Gong, F., Wang, W., Protein extraction from plant tissues for 2DE and its application in proteomic analysis. Proteomics 14 (2014), 645–658.
9. [9] Wang, W., Vignani, R., Scali, M., Cresti, M., A universal and rapid protocol for protein extraction from recalcitrant plant tissues for proteomic analysis. Electrophoresis 27 (2006), 2782–2786.
10. [10] Wongpia, A., Mahatheeranont, S., Lomthaisong, K., Niamsup, H., Evaluation of sample preparation methods from rice seeds and seedlings suitable for two-dimensional gel electrophoresis. Appl. Biochem. Biotechnol. 175 (2015), 1035–1051.
11. [11] Banasiak, A., Evolution of the cell wall components during terrestrialization. Acta Soc. Bot. Pol. 83 (2014), 349–362.
12. [12] Zheng, Q., Song, J., Doncaster, K., Rowland, E., Byers, D.M., Qualitative and quantitative evaluation of protein extraction protocols for apple and strawberry fruit suitable for two-dimensional electrophoresis and mass spectrometry analysis. J. Agric. Food Chem. 55 (2007), 1663–1673.
13. [13] Garcia, M.C., Puchalska, P., Esteve, C., Marina, M.L., Vegetable foods: a cheap source of proteins and peptides with antihypertensive, antioxidant, and other less occurrence bioactivities. Talanta 106 (2013), 328–349.
14. [14] Esteve, C., D'Amato, A., Marina, M.L., García, M.C., Citterio, A., Righetti, P.G., Identification of olive (Olea europaea) seed and pulp proteins by nLC-MS/MS via combinatorial peptide ligand libraries. J. Proteome 75 (2012), 2396–2403.
15. [15] Esteve, C., D'Amato, A., Marina, M.L., García, M.C., Righetti, P.G., In-depth proteomic analysis of banana (Musa spp.) fruit with combinatorial peptide ligand libraries. Electrophoresis 34 (2013), 207–214.
16. [16] Thulasiraman, V., Lin, S.H., Gheorghiu, L., Lathrop, J., Lomas, L., Hammond, D., Boschetti, E., Reduction of the concentration difference of proteins in biological liquids using a library of combinatorial ligands. Electrophoresis 26 (2005), 3561–3571.
17. [17] Righetti, P.G., Candiano, G., Citterio, A., Boschetti, E., Combinatorial peptide ligand libraries as a “Trojan Horse” in deep discovery proteomics. Anal. Chem. 87 (2015), 293–305.
18. [18] Boschetti, E., Righetti, P.G., Optimized sample treatment protocol by solid-phase peptide libraries to enrich for protein traces. Amino Acids 45 (2013), 1431–1442.
19. [19] Righetti, P.G., Boschetti, E., Kravchuk, A.V., Fasoli, E., The proteome buccaneers: how to unearth your treasure chest via combinatorial peptide ligand libraries. Expert Rev. Proteomics 7 (2010), 373–385.
20. [20] Boschetti, E., Righetti, P.G., Hexapeptide combinatorial ligand libraries: the march for the detection of the low-abundance proteome continues. Biotechniques 44 (2008), 663–665.
21. [21] Righetti, P.G., Esteve, C., D'Amato, A., Fasoli, E., Marina, M.L., García, M.C., A sarabande of tropical fruit proteomics: avocado, banana, and mango. Proteomics 15 (2015), 1639–1645.
22. [22][22] Fasoli, E., Colzani, M., Aldini, G., Citterio, A., Righetti, P.G., Lemon peel and Limoncello liqueur: a proteomic duet. Biochim. Biophys. Acta, Proteins Proteomics 2013 (1834), 1484–1491.
23. [23] Lerma-García, M.J., D'Amato, A., Fasoli, E., Simó-Alfonso, E.F., Righetti, P.G., According to the CPLL proteome sheriffs, not all aperitifs are created equal!. Biochim. Biophys. Acta, Proteins Proteomics 2014 (1844), 1493–1499.
24. [24] Esteve, C., D'Amato, A., Marina, M.L., García, M.C., Righetti, P.G., Analytical approaches for the characterization and identification of olive (Olea europaea) oil proteins. J. Agric. Food Chem. 61 (2013), 10384–10391.
25. [25] Esteve, C., D'Amato, A., Marina, M.L., García, M.C., Righetti, P.G., Identification of avocado (Persea americana) pulp proteins by nano-LC-MS/MS via combinatorial peptide ligand libraries. Electrophoresis 33 (2012), 2799–2805.
26. [26] Fasoli, E., Righetti, P.G., The peel and pulp of mango fruit: a proteomic samba. Biochim. Biophys. Acta, Proteins Proteomics 2013 (1834), 2539–2545.
27. [27] Cunsolo, V., Fasoli, E., Saletti, R., Muccilli, V., Gallina, S., Righetti, P.G., Foti, S., Zeus, Aesculapius, Amalthea and the proteome of goat milk. J. Proteome, 69-82, 2015.
28. [28] Monti, L.L., Bustamante, C.A., Osorio, S., Gabilondo, J., Borsani, J., Lauxmann, M.A., Maulion, E., Valentini, G., Budde, C.O., Fernie, A.R., Lara, M.V., Drincovich, M.F., Metabolic profiling of a range of peach fruit varieties reveals high metabolic diversity and commonalities and differences during ripening. Food Chem. 190 (2016), 879–888.
29. [29] Belhadj, F., Somrani, I., Aissaoui, N., Messaoud, C., Boussaid, M., Marzouki, M.N., Bioactive compounds contents, antioxidant and antimicrobial activities during ripening of Prunus persica L. varieties from the North West of Tunisia. Food Chem. 204 (2016), 29–36.
30. [30] Morabbi Najafabad, A., Jamei, R., Free radical scavenging capacity and antioxidant activity of methanolic and ethanolic extracts of plum (Prunus domestica L.) in both fresh and dried samples. Avicenna J. Phytomed. 4 (2014), 343–353.
31. [31] Kayano, S.I., Kikuzaki, H., Yamada, N.F., Aoki, A., Kasamatsu, K., Yamasaki, Y., Ikami, T., Suzuki, T., Mitani, T., Nakatani, N., Antioxidant properties of prunes (Prunus domestica L.) and their constituents. Biofactors 21 (2004), 309–313.
32. [32] Popov, S.V., Ovodova, R.G., Golovchenko, V.V., Khramova, D.S., Markov, P.A., Smirnov, V.V., Shashkov, A.S., Ovodov, Y.S., Pectic polysaccharides of the fresh plum Prunus domestica L. isolated with a simulated gastric fluid and their anti-inflammatory and antioxidant activities. Food Chem. 143 (2014), 106–113.
33. [33] Loizzo, M.R., Pacetti, D., Lucci, P., Nunez, O., Menichini, F., Frega, N.G., Tundis, R., Prunus persica var. platycarpa (Tabacchiera Peach): bioactive compounds and antioxidant activity of pulp, peel and seed ethanolic extracts. Plant Food Hum. Nutr. 70 (2015), 331–337.
34. [34] Gornas, P., Rudzinska, M., Raczyk, M., Misina, I., Soliven, A., Lacis, G., Seglina, D., Impact of species and variety on concentrations of minor lipophilic bioactive compounds in oils recovered from plum kernels. J. Agric. Food Chem. 64 (2016), 898–905.
35. [36] Miyasaka Almeida, A., Urra, C., Moraga, C., Jego, M., Flores, A., Meisel, L., González, M., Infante, R., Defilippi, B.G., Campos-Vargas, R., Orellana, A., Proteomic analysis of a segregant population reveals candidate proteins linked to mealiness in peach. J. Proteome 131 (2016), 71–81.
36. [37] Parreira, J.R., Bouraada, J., Fitzpatrick, M.A., Silvestre, S., da Silva A., B., da Silva J., M., Almeida, A.M., Fevereiro, P., Altelaar, A.F.M., Araujo, S.S., Differential proteomics reveals the hallmarks of seed development in common bean (Phaseolus vulgaris L.). J. Proteome, 2016, 10.1016/j.jprot.2016.03.002.
37. [38] Morre, D.J., Brightman, A.O., Barr, R., Davidson, M., Crane, F.L., Nadh oxidase activity of plasma-membranes of soybean hypocotyls is activated by guanine-nucleotides. Plant Physiol. 102 (1993), 595–602.
38. [39] Bischoff, F., Molendijk, A., Rajendrakumar, C.S.V., Palme, K., GTP-binding proteins in plants. Cell. Mol. Life Sci. 55 (1999), 233–256.
39. [40] Paulus, C., Kollner, B., Jacobsen, H.J., Physiological and biochemical-characterization of glyoxalase-I, a general marker for cell-proliferation, from a soybean cell-suspension. Planta 189 (1993), 561–566.
40. [41] de Silva, K., Laska, B., Brown, C., Sederoff, H.W., Khodakovskaya, M., Arabidopsis thaliana calcium-dependent lipid-binding protein (AtCLB): a novel repressor of abiotic stress response. J. Exp. Bot. 62 (2011), 2679–2689.