Evaluation of Sample Preparation Methods from Rice Seeds and Seedlings Suitable for Two-Dimensional Gel Electrophoresis

Applied Biochemistry and Biotechnology

Volumn 175, Issue 2, 2015, Pages 1035-1051

  Wongpia, Aphinya ^a   Mahatheeranont, Sugunya ^a   Lomthaisong, Khemika ^b   Niamsup, Hataichanoke ^a  

^a CHIANG MAI UNIVERSITY   (Thailand)

^b KHON KAEN UNIVERSITY   (Thailand)

Author keywords

Proteomics; Rice seed; Rice seedling; Sample preparation; Two dimensional gel electrophoresis

Indexed keywords

ELECTROPHORESIS; PHENOLS; PROTEINS; PROTEOMICS; QUALITY CONTROL; TRICHLOROACETIC ACID;

PROTEIN EXTRACTION; PROTEIN RESOLUTION; RICE SEED; RICE SEEDLINGS; SAMPLE PREPARATION; SAMPLE PREPARATION METHODS; TWO-DIMENSIONAL GEL ELECTROPHORESIS; TWO-DIMENSIONAL GEL ELECTROPHORESIS (2-DE);

EXTRACTION;

ACETONE; AMMONIUM ACETATE; BUFFER; MACROGOL; PHENOL; TRICHLOROACETIC ACID; VEGETABLE PROTEIN; ACETIC ACID DERIVATIVE; MACROGOL DERIVATIVE;

ARTICLE; EXTRACTION; FRACTIONATION; GRAIN PROTEIN CONTENT; MOLECULAR WEIGHT; NONHUMAN; PLANT SEED; PRECIPITATION; PROTEIN ANALYSIS; PROTEOMICS; RICE; SEEDLING; TWO DIMENSIONAL GEL ELECTROPHORESIS; ANALYSIS; CHEMISTRY; EVALUATION STUDY; ISOLATION AND PURIFICATION; PROCEDURES;

ORYZA SATIVA;

ACETATES; ACETONE; ANALYTIC SAMPLE PREPARATION METHODS; BUFFERS; CHEMICAL PRECIPITATION; ELECTROPHORESIS, GEL, TWO-DIMENSIONAL; ORYZA SATIVA; PHENOL; PLANT PROTEINS; POLYETHYLENE GLYCOLS; SEEDLING; SEEDS; TRICHLOROACETIC ACID;

EID: 84921046651     PISSN: 02732289     EISSN: 15590291     Source Type: Journal    
DOI: 10.1007/s12010-014-1333-0     Document Type: Article

References (60)

1. Islam, N., Lonsdale, M., Upadhyaya, N. M., Higgins, T. J., Hirano, H., & Akhurst, R. (2004). Proteomics, 4, 1903–1908.
2. Rakwal, R., & Agrawal, G. K. (2003). Electrophoresis, 24, 3378–3389.
3. Kersten, B., Bürkle, L., Kuhn, E. J., Giavalisco, P., Konthur, Z., Lueking, A., et al. (2002). Plant Molecular Biology, 48, 133–141.
4. Packer, N. H., Gooley, A. A. and Wilkins, M. R. (2007). In: Proteome research: Concepts, technology and application (Wilkins, M. R., Appel, R. D., Williams, K. L. and Hochstrasser, D. F., eds.), 2nd ed., Springer, Berlin, pp. 95–121.
5. Huber, L. A. (2003). Nature Reviews Molecular Cell Biology, 4, 74–80.
6. O’Farrell, P. H. (1975). Journal of Biological Chemistry, 250, 4007–4021.
7. Aebersold, R., & Mann, M. (2003). Nature, 422, 198–207.
8. Bodzon-Kulakowska, A., Bierczynska-Krzysik, A., Dylag, T., Drabik, A., Suder, P., Noga, M., et al. (2007). Chromatography B., 849, 1–31.
9. Görg, A., Weiss, W., & Dunn, M. J. (2004). Proteomics, 4, 3665–3685.
10. Zhen, Y., & Shi, J. (2011). Acta Physiologiae Plantarum, 33, 1623–1630.
11. Maldonado, A. M., Echevarría-Zomeño, S., Jean-Baptiste, S., Hernández, M., & Jorrín-Novo, J. V. (2008). Journal of Proteomics, 71, 461–472.
12. Saravanan, R. S., & Rose, J. K. C. (2004). Proteomics, 4, 2522–2532.
13. Agrawal, G. K., Jwa, N.-S., Iwahashi, Y., Yonekura, M., Iwahashi, H., & Rakwal, R. (2006). Proteomics, 6, 5549–5576.
14. Yu, J., Hu, S., Wang, J., Wong, G. K.-S., Li, S., Liu, B., et al. (2002). Science, 296, 79–92.
15. Goff, S. A., Ricke, D., Lan, T.-H., Presting, G., Wang, R., Dunn, M., et al. (2002). Science, 296, 92–100.
16. Agrawal, G. K., & Rakwal, R. (2011). Proteomics, 11, 1630–1649.
17. Huang, W., Bi, T., & Sun, W. (2010). Frontiers of Biology, 5, 546–555.
18. Hakeem, K. R., Chandna, R., Ahmad, A., Qureshi, M. I., & Iqbal, M. (2012). Applied Biochemistry and Biotechnology, 168, 834–850.
19. Chitteti, B. R., & Peng, Z. (2007). Journal of Proteome Research, 6, 1718–1727.
20. Liu, Y., Li, M., Han, C., Wu, F., Tu, B., & Yang, P. (2013). Journal of Integrative Plant Biology, 55, 965–978.
21. Li, Y., Zhang, Z., Nie, Y., Zhang, L., & Wang, Z. (2012). Proteomics, 12, 2340–2354.
22. Zhang, C., Yin, Y., Zhang, A., Lu, Q., Wen, X., Zhu, Z., et al. (2012). Journal of Plant Physiology, 169, 387–398.
23. Kim, S. T., Cho, K. S., Jang, Y. S., & Kang, K. Y. (2001). Electrophoresis, 22, 2103–2109.
24. Neilson, K. A., Mariani, M., & Haynes, P. A. (2011). Proteomics, 11, 1696–1706.
25. Neilson, K. A., Scafaro, A. P., Chick, J. M., George, I. S., Sluyter, S. C. V., Gygi, S. P., et al. (2013). Proteomics, 13, 1922–1933.
26. Xiang, X., Ning, S., Jiang, X., Gong, X., Zhu, R., Zhu, L., et al. (2010). Frontiers Agriculture China, 4, 416–421.
27. Cho, K., Torres, N. L., Subramanyam, S., Deepak, S. A., Sardesai, N., Han, O., et al. (2006). Journal of Plant Biology, 49, 413–420.
28. Shao, C.-H., Liu, G.-R., Wang, J.-Y., Yue, C.-F., & Lin, W.-X. (2008). Agricultural Sciences in China, 7, 1153–1160.
29. Damerval, C., De Vienne, D., Zivy, M., & Thiellement, H. (1986). Electrophoresis, 7, 52–54.
30. Hurkman, W. J., & Tanaka, C. K. (1986). Plant Physiology, 81, 802–806.
31. Afroz, A., Khan, M. R., Ahsan, N., & Komatsu, S. (2009). Peptides, 30, 1600–1607.
32. Badowiec, A., Swigonska, S., & Weidner, S. (2013). Plant Physiology and Biochemistry, 71, 315–324.
33. Swigonska, S., & Weidner, S. (2013). Journal of Plant Physiology, 170, 470–479.
34. Sheoran, I. S., Ross, A. R. S., Olson, D. J. H., & Sawhney, V. K. (2009). Plant Science, 176, 99–104.
35. Pusztai, A. (1966). Biochemical Journal, 99, 93–101.
36. Loomis, W. D., & Battaile, J. (1966). Phytochemistry, 5, 423–438.
37. Carpentier, S. C., Witters, E., Laukens, K., Deckers, P., Swennen, R., & Panis, B. (2005). Proteomics, 5, 2497–2507.
38. Ning, C.-J., Ding, N., Wu, G.-L., Meng, H.-J., Wang, Y.-N., & Wang, Q.-H. (2013). Plant Physiology and Biochemistry, 70, 1–6.
39. Toledo, T. T., Nogueira, S. B., Cordenunsi, B. R., Gozzo, F. C., Pilau, E. J., Lajolo, F. M., et al. (2012). Postharvest Biology Technology, 70, 51–58.
40. Hu, G., Koh, J., Yoo, M.-J., Grupp, K., Chen, S., & Wendel, J. F. (2013). New Phytologist, 200, 570–582.
41. Finnie, C., & Svensson, B. (2009). Journal of Proteomics, 72, 315–324.
42. Hao, J. H., Dong, C. J., Zhang, Z. G., Wang, X. L., & Shang, Q. M. (2012). Plant Science, 187, 69–82.
43. Printz, B., Sergeant, K., Guignard, C., Renaut, J., & Hausman, J.-F. (2013). Proteomics, 13, 1993–2015.
44. Rajalingam, D., Loftis, C., Xu, J. J., & Kumar, T. K. S. (2009). Protein Sciences, 18, 980–993.
45. Atha, D. H., & Ingham, K. C. (1981). Journal of Biological Chemistry, 256, 12108–12117.
46. Arakawa, T., & Timasheff, S. N. (1985). Biochemistry, 24, 6756–6762.
47. He, Y., Wang, S., & Ding, Y. (2013). Journal of Cereal Science, 57, 362–371.
48. Luthe, D. S. (1983). Plant Science Letters, 32, 147–158.
49. Kawakatsu, T., Hirose, S., Yasuda, H., & Takaiwa, F. (2010). Plant Physiology, 154, 1842–1854.
50. Genkov, T., Meyer, M., Griffiths, H., & Spreitzer, R. J. (2010). Journal of Biological Chemistry, 285, 19833–19841.
51. Cho, J.-H., Hwang, H., Cho, M.-H., Kwon, Y.-K., Jeon, J.-S., Bhoo, S. H., et al. (2008). Journal of Plant Biology, 51, 297–301.
52. Xi, J., Wang, X., Li, S., Zhou, X., Yue, L., Fan, J., et al. (2006). Phytochemistry, 67, 2341–2348.
53. Lee, D.-G., Ahsan, N., Lee, S.-H., Kang, K. Y., Bahk, J. D., Lee, I.-J., et al. (2007). Proteomics, 7, 3369–3383.
54. Acquadro, A., Falvo, S., Mila, S., Albo, A. G., Comino, C., Moglia, A., et al. (2009). Electrophoresis, 30, 1594–1602.
55. Vincent, D., Wheatley, M. D., & Cramer, G. R. (2006). Electrophoresis, 27, 1853–1865.
56. Whitesides, G. M., Lilburn, J. E., & Szajewski, R. P. (1977). Journal of Organic Chemistry, 42, 332–338.
57. Sarma, A. D., Oehrle, N. W., & Emerich, D. W. (2008). Analytical Biochemistry, 379, 192–195.
58. Stevens, R., Stevens, L., & Price, N. C. (1983). Biochemical Education, 11, 70.
59. James, G. T. (1978). Analytical Biochemistry, 86, 574–579.
60. Kim, Y. J., Lee, H. M., Wang, Y., Wu, J., Kim, S. G., Kang, K. Y., et al. (2013). Proteomics, 13, 2176–2179.