-
1
-
-
73049167504
-
General Conclusions: Telenomic Mechanisms in Cellular Metabolism, Growth, and Differentiation
-
Monod, J.; Jacob, F. General Conclusions: Telenomic Mechanisms in Cellular Metabolism, Growth, and Differentiation Cold Spring Harbor Symp. Quant. Biol. 1961, 26, 389-401 10.1101/SQB.1961.026.01.048
-
(1961)
Cold Spring Harbor Symp. Quant. Biol.
, vol.26
, pp. 389-401
-
-
Monod, J.1
Jacob, F.2
-
2
-
-
78651189765
-
On the Nature of Allosteric Transitions: A Plausible Model
-
Monod, J.; Wyman, J.; Changeux, J.-P. On the Nature of Allosteric Transitions: A Plausible Model J. Mol. Biol. 1965, 12, 88-118 10.1016/S0022-2836(65)80285-6
-
(1965)
J. Mol. Biol.
, vol.12
, pp. 88-118
-
-
Monod, J.1
Wyman, J.2
Changeux, J.-P.3
-
3
-
-
0000095559
-
The Problem of the Heme Interactions in Hemoglobin and the Basis of the Bohr Effect
-
Wyman, J.; Allen, D. W. The Problem of the Heme Interactions in Hemoglobin and the Basis of the Bohr Effect J. Polym. Sci. 1951, 7, 499-518 10.1002/pol.1951.120070506
-
(1951)
J. Polym. Sci.
, vol.7
, pp. 499-518
-
-
Wyman, J.1
Allen, D.W.2
-
4
-
-
0021658956
-
Allostery without Conformational Change. A Plausible Model
-
Cooper, A.; Dryden, D. T. Allostery without Conformational Change. A Plausible Model Eur. Biophys. J. 1984, 11, 103-109 10.1007/BF00276625
-
(1984)
Eur. Biophys. J.
, vol.11
, pp. 103-109
-
-
Cooper, A.1
Dryden, D.T.2
-
5
-
-
84916887461
-
Allostery without a Conformational Change? Revisiting the Paradigm
-
Nussinov, R.; Tsai, C. J. Allostery without a Conformational Change? Revisiting the Paradigm Curr. Opin. Struct. Biol. 2015, 30, 17-24 10.1016/j.sbi.2014.11.005
-
(2015)
Curr. Opin. Struct. Biol.
, vol.30
, pp. 17-24
-
-
Nussinov, R.1
Tsai, C.J.2
-
6
-
-
84920987371
-
Reduced Curvature of Ligand-Binding Domain Free-Energy Surface Underlies Partial Agonism at NMDA Receptors
-
Dai, J.; Zhou, H. X. Reduced Curvature of Ligand-Binding Domain Free-Energy Surface Underlies Partial Agonism at NMDA Receptors Structure 2015, 23, 228-236 10.1016/j.str.2014.11.012
-
(2015)
Structure
, vol.23
, pp. 228-236
-
-
Dai, J.1
Zhou, H.X.2
-
7
-
-
84940498782
-
Mechanism-Based Mathematical Model for Gating of Ionotropic Glutamate Receptors
-
Dai, J.; Wollmuth, L. P.; Zhou, H. X. Mechanism-Based Mathematical Model for Gating of Ionotropic Glutamate Receptors J. Phys. Chem. B 2015, 119, 10934-10940 10.1021/acs.jpcb.5b00521
-
(2015)
J. Phys. Chem. B
, vol.119
, pp. 10934-10940
-
-
Dai, J.1
Wollmuth, L.P.2
Zhou, H.X.3
-
8
-
-
0001858251
-
Application of a Theory of Enzyme Specificity to Protein Synthesis
-
Koshland, D. E. Application of a Theory of Enzyme Specificity to Protein Synthesis Proc. Natl. Acad. Sci. U.S.A. 1958, 44, 98-104 10.1073/pnas.44.2.98
-
(1958)
Proc. Natl. Acad. Sci. U.S.A.
, vol.44
, pp. 98-104
-
-
Koshland, D.E.1
-
9
-
-
0019790028
-
Conformational Changes and Drug Action
-
Burgen, A. S. Conformational Changes and Drug Action Fed. Proc. 1981, 40, 2723-2728
-
(1981)
Fed. Proc.
, vol.40
, pp. 2723-2728
-
-
Burgen, A.S.1
-
10
-
-
0032824805
-
Folding Funnels and Binding Mechanisms
-
Ma, B.; Kumar, S.; Tsai, C. J.; Nussinov, R. Folding Funnels and Binding Mechanisms Protein Eng., Des. Sel. 1999, 12, 713-720 10.1093/protein/12.9.713
-
(1999)
Protein Eng., Des. Sel.
, vol.12
, pp. 713-720
-
-
Ma, B.1
Kumar, S.2
Tsai, C.J.3
Nussinov, R.4
-
11
-
-
33646776723
-
Reconciling the ″old″ and ″new″ Views of Protein Allostery: A Molecular Simulation Study of Chemotaxis y Protein (Chey)
-
Formaneck, M. S.; Ma, L.; Cui, Q. Reconciling the ″Old″ and ″New″ Views of Protein Allostery: A Molecular Simulation Study of Chemotaxis Y Protein (Chey) Proteins: Struct., Funct., Genet. 2006, 63, 846-867 10.1002/prot.20893
-
(2006)
Proteins: Struct., Funct., Genet.
, vol.63
, pp. 846-867
-
-
Formaneck, M.S.1
Ma, L.2
Cui, Q.3
-
12
-
-
70350340728
-
The Role of Dynamic Conformational Ensembles in Biomolecular Recognition
-
Boehr, D. D.; Nussinov, R.; Wright, P. E. The Role of Dynamic Conformational Ensembles in Biomolecular Recognition Nat. Chem. Biol. 2009, 5, 789-796 10.1038/nchembio.232
-
(2009)
Nat. Chem. Biol.
, vol.5
, pp. 789-796
-
-
Boehr, D.D.1
Nussinov, R.2
Wright, P.E.3
-
13
-
-
0013863816
-
Comparison of Experimental Binding Data and Theoretical Models in Proteins Containing Subunits
-
Koshland, D. E., Jr.; Nemethy, G.; Filmer, D. Comparison of Experimental Binding Data and Theoretical Models in Proteins Containing Subunits Biochemistry 1966, 5, 365-385 10.1021/bi00865a047
-
(1966)
Biochemistry
, vol.5
, pp. 365-385
-
-
Koshland, Jr.D.E.1
Nemethy, G.2
Filmer, D.3
-
14
-
-
84904291286
-
Both Protein Dynamics and Ligand Concentration Can Shift the Binding Mechanism between Conformational Selection and Induced Fit
-
Greives, N.; Zhou, H. X. Both Protein Dynamics and Ligand Concentration Can Shift the Binding Mechanism between Conformational Selection and Induced Fit Proc. Natl. Acad. Sci. U.S.A. 2014, 111, 10197-10202 10.1073/pnas.1407545111
-
(2014)
Proc. Natl. Acad. Sci. U.S.A.
, vol.111
, pp. 10197-10202
-
-
Greives, N.1
Zhou, H.X.2
-
15
-
-
0016354547
-
Kinetics of Allosteric Enzymes
-
Hammes, G. G.; Wu, C. W. Kinetics of Allosteric Enzymes Annu. Rev. Biophys. Bioeng. 1974, 3, 1-33 10.1146/annurev.bb.03.060174.000245
-
(1974)
Annu. Rev. Biophys. Bioeng.
, vol.3
, pp. 1-33
-
-
Hammes, G.G.1
Wu, C.W.2
-
16
-
-
69549120472
-
Conformational Selection or Induced Fit: A Flux Description of Reaction Mechanism
-
Hammes, G. G.; Chang, Y. C.; Oas, T. G. Conformational Selection or Induced Fit: A Flux Description of Reaction Mechanism Proc. Natl. Acad. Sci. U.S.A. 2009, 106, 13737-13741 10.1073/pnas.0907195106
-
(2009)
Proc. Natl. Acad. Sci. U.S.A.
, vol.106
, pp. 13737-13741
-
-
Hammes, G.G.1
Chang, Y.C.2
Oas, T.G.3
-
17
-
-
77949587817
-
From Induced Fit to Conformational Selection: A Continuum of Binding Mechanism Controlled by the Timescale of Conformational Transitions
-
Zhou, H.-X. From Induced Fit to Conformational Selection: A Continuum of Binding Mechanism Controlled by the Timescale of Conformational Transitions Biophys. J. 2010, 98, L15-L17 10.1016/j.bpj.2009.11.029
-
(2010)
Biophys. J.
, vol.98
, pp. L15-L17
-
-
Zhou, H.-X.1
-
18
-
-
0014958182
-
Stereochemistry of Cooperative Effects in Haemoglobin
-
Perutz, M. F. Stereochemistry of Cooperative Effects in Haemoglobin Nature 1970, 228, 726-739 10.1038/228726a0
-
(1970)
Nature
, vol.228
, pp. 726-739
-
-
Perutz, M.F.1
-
19
-
-
34547963038
-
Evolution of Allosteric Models for Hemoglobin
-
Eaton, W. A.; Henry, E. R.; Hofrichter, J.; Bettati, S.; Viappiani, C.; Mozzarelli, A. Evolution of Allosteric Models for Hemoglobin IUBMB Life 2007, 59, 586-599 10.1080/15216540701272380
-
(2007)
IUBMB Life
, vol.59
, pp. 586-599
-
-
Eaton, W.A.1
Henry, E.R.2
Hofrichter, J.3
Bettati, S.4
Viappiani, C.5
Mozzarelli, A.6
-
20
-
-
48249141040
-
Allostery and Cooperativity Revisited
-
Cui, Q.; Karplus, M. Allostery and Cooperativity Revisited Protein Sci. 2008, 17, 1295-1307 10.1110/ps.03259908
-
(2008)
Protein Sci.
, vol.17
, pp. 1295-1307
-
-
Cui, Q.1
Karplus, M.2
-
21
-
-
80052340812
-
The Role of Protein Conformational Fluctuations in Allostery, Function, and Evolution
-
Wrabl, J. O.; Gu, J.; Liu, T.; Schrank, T. P.; Whitten, S. T.; Hilser, V. J. The Role of Protein Conformational Fluctuations in Allostery, Function, and Evolution Biophys. Chem. 2011, 159, 129-141 10.1016/j.bpc.2011.05.020
-
(2011)
Biophys. Chem.
, vol.159
, pp. 129-141
-
-
Wrabl, J.O.1
Gu, J.2
Liu, T.3
Schrank, T.P.4
Whitten, S.T.5
Hilser, V.J.6
-
22
-
-
0035937443
-
Two-State Allosteric Behavior in a Single-Domain Signaling Protein
-
Volkman, B. F.; Lipson, D.; Wemmer, D. E.; Kern, D. Two-State Allosteric Behavior in a Single-Domain Signaling Protein Science 2001, 291, 2429-2433 10.1126/science.291.5512.2429
-
(2001)
Science
, vol.291
, pp. 2429-2433
-
-
Volkman, B.F.1
Lipson, D.2
Wemmer, D.E.3
Kern, D.4
-
23
-
-
4344649812
-
CBFbeta Allosterically Regulates the Runx1 Runt Domain Via a Dynamic Conformational Equilibrium
-
Yan, J.; Liu, Y.; Lukasik, S. M.; Speck, N. A.; Bushweller, J. H. CBFbeta Allosterically Regulates the Runx1 Runt Domain Via a Dynamic Conformational Equilibrium Nat. Struct. Mol. Biol. 2004, 11, 901-906 10.1038/nsmb819
-
(2004)
Nat. Struct. Mol. Biol.
, vol.11
, pp. 901-906
-
-
Yan, J.1
Liu, Y.2
Lukasik, S.M.3
Speck, N.A.4
Bushweller, J.H.5
-
24
-
-
33748363077
-
Dynamically Driven Protein Allostery
-
Popovych, N.; Sun, S.; Ebright, R. H.; Kalodimos, C. G. Dynamically Driven Protein Allostery Nat. Struct. Mol. Biol. 2006, 13, 831-838 10.1038/nsmb1132
-
(2006)
Nat. Struct. Mol. Biol.
, vol.13
, pp. 831-838
-
-
Popovych, N.1
Sun, S.2
Ebright, R.H.3
Kalodimos, C.G.4
-
25
-
-
70849084011
-
Hidden Dynamic Allostery in a PDZ Domain
-
Petit, C. M.; Zhang, J.; Sapienza, P. J.; Fuentes, E. J.; Lee, A. L. Hidden Dynamic Allostery in a PDZ Domain Proc. Natl. Acad. Sci. U.S.A. 2009, 106, 18249-18254 10.1073/pnas.0904492106
-
(2009)
Proc. Natl. Acad. Sci. U.S.A.
, vol.106
, pp. 18249-18254
-
-
Petit, C.M.1
Zhang, J.2
Sapienza, P.J.3
Fuentes, E.J.4
Lee, A.L.5
-
26
-
-
79961091511
-
Stereospecific Gating of Functional Motions in Pin1
-
Namanja, A. T.; Wang, X. J.; Xu, B.; Mercedes-Camacho, A. Y.; Wilson, K. A.; Etzkorn, F. A.; Peng, J. W. Stereospecific Gating of Functional Motions in Pin1 Proc. Natl. Acad. Sci. U.S.A. 2011, 108, 12289-12294 10.1073/pnas.1019382108
-
(2011)
Proc. Natl. Acad. Sci. U.S.A.
, vol.108
, pp. 12289-12294
-
-
Namanja, A.T.1
Wang, X.J.2
Xu, B.3
Mercedes-Camacho, A.Y.4
Wilson, K.A.5
Etzkorn, F.A.6
Peng, J.W.7
-
27
-
-
84870938343
-
Proteasome Allostery as a Population Shift between Interchanging Conformers
-
Ruschak, A. M.; Kay, L. E. Proteasome Allostery as a Population Shift Between Interchanging Conformers Proc. Natl. Acad. Sci. U.S.A. 2012, 109, E3454-3462 10.1073/pnas.1213640109
-
(2012)
Proc. Natl. Acad. Sci. U.S.A.
, vol.109
, pp. E3454-E3462
-
-
Ruschak, A.M.1
Kay, L.E.2
-
28
-
-
84875472274
-
Solution NMR and Computational Methods for Understanding Protein Allostery
-
Manley, G.; Rivalta, I.; Loria, J. P. Solution NMR and Computational Methods for Understanding Protein Allostery J. Phys. Chem. B 2013, 117, 3063-3073 10.1021/jp312576v
-
(2013)
J. Phys. Chem. B
, vol.117
, pp. 3063-3073
-
-
Manley, G.1
Rivalta, I.2
Loria, J.P.3
-
29
-
-
84887620421
-
Structural Basis for Modulation of a G-Protein-Coupled Receptor by Allosteric Drugs
-
Dror, R. O.; Green, H. F.; Valant, C.; Borhani, D. W.; Valcourt, J. R.; Pan, A. C.; Arlow, D. H.; Canals, M.; Lane, J. R.; Rahmani, R. et al. Structural Basis for Modulation of a G-Protein-Coupled Receptor by Allosteric Drugs Nature 2013, 503, 295-299 10.1038/nature12595
-
(2013)
Nature
, vol.503
, pp. 295-299
-
-
Dror, R.O.1
Green, H.F.2
Valant, C.3
Borhani, D.W.4
Valcourt, J.R.5
Pan, A.C.6
Arlow, D.H.7
Canals, M.8
Lane, J.R.9
Rahmani, R.10
-
30
-
-
84936103060
-
Allostery through the Computational Microscope: CAMP Activation of a Canonical Signalling Domain
-
Malmstrom, R. D.; Kornev, A. P.; Taylor, S. S.; Amaro, R. E. Allostery through the Computational Microscope: cAMP Activation of a Canonical Signalling Domain Nat. Commun. 2015, 6 7588 10.1038/ncomms8588
-
(2015)
Nat. Commun.
, vol.6
, pp. 7588
-
-
Malmstrom, R.D.1
Kornev, A.P.2
Taylor, S.S.3
Amaro, R.E.4
-
31
-
-
84931287895
-
Free Energy Landscape of Activation in a Signalling Protein at Atomic Resolution
-
Pontiggia, F.; Pachov, D. V.; Clarkson, M. W.; Villali, J.; Hagan, M. F.; Pande, V. S.; Kern, D. Free Energy Landscape of Activation in a Signalling Protein at Atomic Resolution Nat. Commun. 2015, 6, 7284 10.1038/ncomms8284
-
(2015)
Nat. Commun.
, vol.6
, pp. 7284
-
-
Pontiggia, F.1
Pachov, D.V.2
Clarkson, M.W.3
Villali, J.4
Hagan, M.F.5
Pande, V.S.6
Kern, D.7
-
32
-
-
84896484176
-
Computational Approaches to Mapping Allosteric Pathways
-
Feher, V. A.; Durrant, J. D.; Van Wart, A. T.; Amaro, R. E. Computational Approaches to Mapping Allosteric Pathways Curr. Opin. Struct. Biol. 2014, 25, 98-103 10.1016/j.sbi.2014.02.004
-
(2014)
Curr. Opin. Struct. Biol.
, vol.25
, pp. 98-103
-
-
Feher, V.A.1
Durrant, J.D.2
Van Wart, A.T.3
Amaro, R.E.4
-
33
-
-
0037219686
-
Evolutionarily Conserved Networks of Residues Mediate Allosteric Communication in Proteins
-
Suel, G. M.; Lockless, S. W.; Wall, M. A.; Ranganathan, R. Evolutionarily Conserved Networks of Residues Mediate Allosteric Communication in Proteins Nat. Struct. Biol. 2003, 10, 59-69 10.1038/nsb881
-
(2003)
Nat. Struct. Biol.
, vol.10
, pp. 59-69
-
-
Suel, G.M.1
Lockless, S.W.2
Wall, M.A.3
Ranganathan, R.4
-
34
-
-
66149086947
-
Dynamical Networks in tRNA:Protein Complexes
-
Sethi, A.; Eargle, J.; Black, A. A.; Luthey-Schulten, Z. Dynamical Networks in tRNA:Protein Complexes Proc. Natl. Acad. Sci. U.S.A. 2009, 106, 6620-6625 10.1073/pnas.0810961106
-
(2009)
Proc. Natl. Acad. Sci. U.S.A.
, vol.106
, pp. 6620-6625
-
-
Sethi, A.1
Eargle, J.2
Black, A.A.3
Luthey-Schulten, Z.4
-
35
-
-
84898993517
-
The Ensemble Nature of Allostery
-
Motlagh, H. N.; Wrabl, J. O.; Li, J.; Hilser, V. J. The Ensemble Nature of Allostery Nature 2014, 508, 331-339 10.1038/nature13001
-
(2014)
Nature
, vol.508
, pp. 331-339
-
-
Motlagh, H.N.1
Wrabl, J.O.2
Li, J.3
Hilser, V.J.4
-
36
-
-
0035943696
-
On the Dynamic Origins of Allosteric Activation
-
Wand, A. J.; Kern, D. On the Dynamic Origins of Allosteric Activation Science 2001, 293, 1395 10.1126/science.293.5534.1395a
-
(2001)
Science
, vol.293
, pp. 1395
-
-
Wand, A.J.1
Kern, D.2
-
37
-
-
84920950379
-
Two Pathways Mediate Interdomain Allosteric Regulation in Pin1
-
Guo, J.; Pang, X.; Zhou, H. X. Two Pathways Mediate Interdomain Allosteric Regulation in Pin1 Structure 2015, 23, 237-247 10.1016/j.str.2014.11.009
-
(2015)
Structure
, vol.23
, pp. 237-247
-
-
Guo, J.1
Pang, X.2
Zhou, H.X.3
-
38
-
-
79551689721
-
Protein Dynamics and Allostery: An NMR View
-
Tzeng, S. R.; Kalodimos, C. G. Protein Dynamics and Allostery: An NMR View Curr. Opin. Struct. Biol. 2011, 21, 62-67 10.1016/j.sbi.2010.10.007
-
(2011)
Curr. Opin. Struct. Biol.
, vol.21
, pp. 62-67
-
-
Tzeng, S.R.1
Kalodimos, C.G.2
-
39
-
-
84930939681
-
Substrate-Binding Domain Conformational Dynamics Mediate Hsp70 Allostery
-
Zhuravleva, A.; Gierasch, L. M. Substrate-Binding Domain Conformational Dynamics Mediate Hsp70 Allostery Proc. Natl. Acad. Sci. U.S.A. 2015, 112, E2865-2873 10.1073/pnas.1506692112
-
(2015)
Proc. Natl. Acad. Sci. U.S.A.
, vol.112
, pp. E2865-E2873
-
-
Zhuravleva, A.1
Gierasch, L.M.2
-
40
-
-
78649766072
-
Nanometer Propagation of Millisecond Motions in V-Type Allostery
-
Lipchock, J. M.; Loria, J. P. Nanometer Propagation of Millisecond Motions in V-Type Allostery Structure 2010, 18, 1596-1607 10.1016/j.str.2010.09.020
-
(2010)
Structure
, vol.18
, pp. 1596-1607
-
-
Lipchock, J.M.1
Loria, J.P.2
-
41
-
-
84914171432
-
Synchronous Opening and Closing Motions Are Essential for cAMP-Dependent Protein Kinase a Signaling
-
Srivastava, A. K.; McDonald, L. R.; Cembran, A.; Kim, J.; Masterson, L. R.; McClendon, C. L.; Taylor, S. S.; Veglia, G. Synchronous Opening and Closing Motions Are Essential for cAMP-Dependent Protein Kinase a Signaling Structure 2014, 22, 1735-1743 10.1016/j.str.2014.09.010
-
(2014)
Structure
, vol.22
, pp. 1735-1743
-
-
Srivastava, A.K.1
McDonald, L.R.2
Cembran, A.3
Kim, J.4
Masterson, L.R.5
McClendon, C.L.6
Taylor, S.S.7
Veglia, G.8
-
42
-
-
84938297048
-
Cofactor-Mediated Conformational Dynamics Promote Product Release from Escherichia coli Dihydrofolate Reductase Via an Allosteric Pathway
-
Oyen, D.; Fenwick, R. B.; Stanfield, R. L.; Dyson, H. J.; Wright, P. E. Cofactor-Mediated Conformational Dynamics Promote Product Release from Escherichia Coli Dihydrofolate Reductase Via an Allosteric Pathway J. Am. Chem. Soc. 2015, 137, 9459-9468 10.1021/jacs.5b05707
-
(2015)
J. Am. Chem. Soc.
, vol.137
, pp. 9459-9468
-
-
Oyen, D.1
Fenwick, R.B.2
Stanfield, R.L.3
Dyson, H.J.4
Wright, P.E.5
-
43
-
-
84871836555
-
Allosteric Networks in Thrombin Distinguish Procoagulant vs. Anticoagulant Activities
-
Gasper, P. M.; Fuglestad, B.; Komives, E. A.; Markwick, P. R.; McCammon, J. A. Allosteric Networks in Thrombin Distinguish Procoagulant vs. Anticoagulant Activities Proc. Natl. Acad. Sci. U.S.A. 2012, 109, 21216-21222 10.1073/pnas.1218414109
-
(2012)
Proc. Natl. Acad. Sci. U.S.A.
, vol.109
, pp. 21216-21222
-
-
Gasper, P.M.1
Fuglestad, B.2
Komives, E.A.3
Markwick, P.R.4
McCammon, J.A.5
-
44
-
-
4243155782
-
NMR Characterization of the Dynamics of Biomacromolecules
-
Palmer, A. G., III. NMR Characterization of the Dynamics of Biomacromolecules Chem. Rev. 2004, 104, 3623-3640 10.1021/cr030413t
-
(2004)
Chem. Rev.
, vol.104
, pp. 3623-3640
-
-
Palmer, A.G.1
-
45
-
-
0030612833
-
2 Relaxation by Mutual Cancellation of Dipole-Dipole Coupling and Chemical Shift Anisotropy Indicates an Avenue to NMR Structures of Very Large Biological Macromolecules in Solution
-
2 Relaxation by Mutual Cancellation of Dipole-Dipole Coupling and Chemical Shift Anisotropy Indicates an Avenue to NMR Structures of Very Large Biological Macromolecules in Solution Proc. Natl. Acad. Sci. U.S.A. 1997, 94, 12366-12371 10.1073/pnas.94.23.12366
-
(1997)
Proc. Natl. Acad. Sci. U.S.A.
, vol.94
, pp. 12366-12371
-
-
Pervushin, K.1
Riek, R.2
Wider, G.3
Wuthrich, K.4
-
46
-
-
33646719091
-
Model-Free Approach to the Interpretation of Nuclear Magnetic Resonance Relaxation in Macromolecules. 1. Theory and Range of Validity
-
Lipari, G.; Szabo, A. Model-Free Approach to the Interpretation of Nuclear Magnetic Resonance Relaxation in Macromolecules. 1. Theory and Range of Validity J. Am. Chem. Soc. 1982, 104, 4546-4559 10.1021/ja00381a009
-
(1982)
J. Am. Chem. Soc.
, vol.104
, pp. 4546-4559
-
-
Lipari, G.1
Szabo, A.2
-
47
-
-
35948943745
-
Validation of Molecular Dynamics Simulations of Biomolecules Using NMR Spin Relaxation as Benchmarks: Application to the Amber99SB Force Field
-
Showalter, S. A.; Bruschweiler, R. Validation of Molecular Dynamics Simulations of Biomolecules Using NMR Spin Relaxation as Benchmarks: Application to the Amber99SB Force Field J. Chem. Theory Comput. 2007, 3, 961-975 10.1021/ct7000045
-
(2007)
J. Chem. Theory Comput.
, vol.3
, pp. 961-975
-
-
Showalter, S.A.1
Bruschweiler, R.2
-
48
-
-
44949111351
-
Microsecond Molecular Dynamics Simulation Shows Effect of Slow Loop Dynamics on Backbone Amide Order Parameters of Proteins
-
Maragakis, P.; Lindorff-Larsen, K.; Eastwood, M. P.; Dror, R. O.; Klepeis, J. L.; Arkin, I. T.; Jensen, M. O.; Xu, H. F.; Trbovic, N.; Friesner, R. A. et al. Microsecond Molecular Dynamics Simulation Shows Effect of Slow Loop Dynamics on Backbone Amide Order Parameters of Proteins J. Phys. Chem. B 2008, 112, 6155-6158 10.1021/jp077018h
-
(2008)
J. Phys. Chem. B
, vol.112
, pp. 6155-6158
-
-
Maragakis, P.1
Lindorff-Larsen, K.2
Eastwood, M.P.3
Dror, R.O.4
Klepeis, J.L.5
Arkin, I.T.6
Jensen, M.O.7
Xu, H.F.8
Trbovic, N.9
Friesner, R.A.10
-
49
-
-
0030601792
-
Contributions to Conformational Entropy Arising from Bond Vector Fluctuations Measured from NMR-Derived Order Parameters: Application to Protein Folding
-
Yang, D.; Kay, L. E. Contributions to Conformational Entropy Arising from Bond Vector Fluctuations Measured from NMR-Derived Order Parameters: Application to Protein Folding J. Mol. Biol. 1996, 263, 369-382 10.1006/jmbi.1996.0581
-
(1996)
J. Mol. Biol.
, vol.263
, pp. 369-382
-
-
Yang, D.1
Kay, L.E.2
-
50
-
-
0030473440
-
Insights into the Local Residual Entropy of Proteins Provided by NMR Relaxation
-
Li, Z.; Raychaudhuri, S.; Wand, A. J. Insights into the Local Residual Entropy of Proteins Provided by NMR Relaxation Protein Sci. 1996, 5, 2647-2650 10.1002/pro.5560051228
-
(1996)
Protein Sci.
, vol.5
, pp. 2647-2650
-
-
Li, Z.1
Raychaudhuri, S.2
Wand, A.J.3
-
51
-
-
84873526287
-
The Dark Energy of Proteins Comes to Light: Conformational Entropy and Its Role in Protein Function Revealed by NMR Relaxation
-
Wand, A. J. The Dark Energy of Proteins Comes to Light: Conformational Entropy and Its Role in Protein Function Revealed by NMR Relaxation Curr. Opin. Struct. Biol. 2013, 23, 75-81 10.1016/j.sbi.2012.11.005
-
(2013)
Curr. Opin. Struct. Biol.
, vol.23
, pp. 75-81
-
-
Wand, A.J.1
-
52
-
-
33847534249
-
Effects of Diffusion on Free Precession in Nuclear Magnetic Resonance Experiments
-
Carr, H. Y.; Purcell, E. M. Effects of Diffusion on Free Precession in Nuclear Magnetic Resonance Experiments Phys. Rev. 1954, 94, 630-638 10.1103/PhysRev.94.630
-
(1954)
Phys. Rev.
, vol.94
, pp. 630-638
-
-
Carr, H.Y.1
Purcell, E.M.2
-
53
-
-
0002899752
-
Modified Spin-Echo Method for Measuring Nuclear Relaxation Times
-
Meiboom, S.; Gill, D. Modified Spin-Echo Method for Measuring Nuclear Relaxation Times Rev. Sci. Instrum. 1958, 29, 688-691 10.1063/1.1716296
-
(1958)
Rev. Sci. Instrum.
, vol.29
, pp. 688-691
-
-
Meiboom, S.1
Gill, D.2
-
54
-
-
36849127400
-
Nuclear Magnetic Resonance Study of Protolysis of Trimethylammonium Ion in Aqueous Solution - Order of Reaction with Respect to Solvent
-
Luz, Z.; Meiboom, S. Nuclear Magnetic Resonance Study of Protolysis of Trimethylammonium Ion in Aqueous Solution-Order of Reaction with Respect to Solvent J. Chem. Phys. 1963, 39, 366-370 10.1063/1.1734254
-
(1963)
J. Chem. Phys.
, vol.39
, pp. 366-370
-
-
Luz, Z.1
Meiboom, S.2
-
55
-
-
0002889918
-
2 Upon Carr-Purcell Pulse Separation
-
2 Upon Carr-Purcell Pulse Separation J. Magn. Reson. 1972, 6, 89-105 10.1016/0022-2364(72)90090-X
-
(1972)
J. Magn. Reson.
, vol.6
, pp. 89-105
-
-
Carver, J.P.1
Richards, R.E.2
-
56
-
-
84902544984
-
2,Eff in CPMG Experiments in the Case of Two Site Chemical Exchange
-
2,Eff in CPMG Experiments in the Case of Two Site Chemical Exchange J. Magn. Reson. 2014, 244, 114-124 10.1016/j.jmr.2014.02.023
-
(2014)
J. Magn. Reson.
, vol.244
, pp. 114-124
-
-
Baldwin, A.J.1
-
57
-
-
84974519058
-
-
CBMS Regional Conference Series in Mathematics, Number 92; American Mathematical Society Publications
-
Chung, F. R. K. Spectral Graph Theory; CBMS Regional Conference Series in Mathematics, Number 92; American Mathematical Society Publications, 1997.
-
(1997)
Spectral Graph Theory
-
-
Chung, F.R.K.1
-
58
-
-
0346057951
-
Small-World Communication of Residues and Significance for Protein Dynamics
-
Atilgan, A. R.; Akan, P.; Baysal, C. Small-World Communication of Residues and Significance for Protein Dynamics Biophys. J. 2004, 86, 85-91 10.1016/S0006-3495(04)74086-2
-
(2004)
Biophys. J.
, vol.86
, pp. 85-91
-
-
Atilgan, A.R.1
Akan, P.2
Baysal, C.3
-
59
-
-
0030623823
-
Direct Evaluation of Thermal Fluctuations in Proteins Using a Single-Parameter Harmonic Potential
-
Bahar, I.; Atilgan, A. R.; Erman, B. Direct Evaluation of Thermal Fluctuations in Proteins Using a Single-Parameter Harmonic Potential Folding Des. 1997, 2, 173-181 10.1016/S1359-0278(97)00024-2
-
(1997)
Folding Des.
, vol.2
, pp. 173-181
-
-
Bahar, I.1
Atilgan, A.R.2
Erman, B.3
-
60
-
-
28444453011
-
A Network Representation of Protein Structures: Implications for Protein Stability
-
Brinda, K. V.; Vishveshwara, S. A Network Representation of Protein Structures: Implications for Protein Stability Biophys. J. 2005, 89, 4159-4170 10.1529/biophysj.105.064485
-
(2005)
Biophys. J.
, vol.89
, pp. 4159-4170
-
-
Brinda, K.V.1
Vishveshwara, S.2
-
61
-
-
79952498871
-
Wordom: A User-Friendly Program for the Analysis of Molecular Structures, Trajectories, and Free Energy Surfaces
-
Seeber, M.; Felline, A.; Raimondi, F.; Muff, S.; Friedman, R.; Rao, F.; Caflisch, A.; Fanelli, F. Wordom: A User-Friendly Program for the Analysis of Molecular Structures, Trajectories, and Free Energy Surfaces J. Comput. Chem. 2011, 32, 1183-1194 10.1002/jcc.21688
-
(2011)
J. Comput. Chem.
, vol.32
, pp. 1183-1194
-
-
Seeber, M.1
Felline, A.2
Raimondi, F.3
Muff, S.4
Friedman, R.5
Rao, F.6
Caflisch, A.7
Fanelli, F.8
-
62
-
-
33749055796
-
Markov Propagation of Allosteric Effects in Biomolecular Systems: Application to Groel-Groes
-
Chennubhotla, C.; Bahar, I. Markov Propagation of Allosteric Effects in Biomolecular Systems: Application to Groel-Groes Mol. Syst. Biol. 2006, 2, 36 10.1038/msb4100075
-
(2006)
Mol. Syst. Biol.
, vol.2
, pp. 36
-
-
Chennubhotla, C.1
Bahar, I.2
-
63
-
-
34848852941
-
Allosteric Transitions in the Chaperonin GroEL Are Captured by a Dominant Normal Mode That Is Most Robust to Sequence Variations
-
Zheng, W.; Brooks, B. R.; Thirumalai, D. Allosteric Transitions in the Chaperonin GroEL Are Captured by a Dominant Normal Mode That Is Most Robust to Sequence Variations Biophys. J. 2007, 93, 2289-2299 10.1529/biophysj.107.105270
-
(2007)
Biophys. J.
, vol.93
, pp. 2289-2299
-
-
Zheng, W.1
Brooks, B.R.2
Thirumalai, D.3
-
64
-
-
84945709831
-
Algorithm-97 - Shortest Path
-
Floyd, R. W. Algorithm-97-Shortest Path Commun. ACM 1962, 5, 345-345 10.1145/367766.368168
-
(1962)
Commun. ACM
, vol.5
, pp. 345
-
-
Floyd, R.W.1
-
65
-
-
0037062448
-
Community Structure in Social and Biological Networks
-
Girvan, M.; Newman, M. E. Community Structure in Social and Biological Networks Proc. Natl. Acad. Sci. U.S.A. 2002, 99, 7821-7826 10.1073/pnas.122653799
-
(2002)
Proc. Natl. Acad. Sci. U.S.A.
, vol.99
, pp. 7821-7826
-
-
Girvan, M.1
Newman, M.E.2
-
66
-
-
84861889672
-
Allosteric Pathways in Imidazole Glycerol Phosphate Synthase
-
Rivalta, I.; Sultan, M. M.; Lee, N. S.; Manley, G. A.; Loria, J. P.; Batista, V. S. Allosteric Pathways in Imidazole Glycerol Phosphate Synthase Proc. Natl. Acad. Sci. U.S.A. 2012, 109, E1428-1436 10.1073/pnas.1120536109
-
(2012)
Proc. Natl. Acad. Sci. U.S.A.
, vol.109
, pp. E1428-E1436
-
-
Rivalta, I.1
Sultan, M.M.2
Lee, N.S.3
Manley, G.A.4
Loria, J.P.5
Batista, V.S.6
-
67
-
-
33644847828
-
Generalized Correlation for Biomolecular Dynamics
-
Lange, O. F.; Grubmuller, H. Generalized Correlation for Biomolecular Dynamics Proteins: Struct., Funct., Genet. 2006, 62, 1053-1061 10.1002/prot.20784
-
(2006)
Proteins: Struct., Funct., Genet.
, vol.62
, pp. 1053-1061
-
-
Lange, O.F.1
Grubmuller, H.2
-
68
-
-
84865063074
-
Exploring Residue Component Contributions to Dynamical Network Models of Allostery
-
Vanwart, A. T.; Eargle, J.; Luthey-Schulten, Z.; Amaro, R. E. Exploring Residue Component Contributions to Dynamical Network Models of Allostery J. Chem. Theory Comput. 2012, 8, 2949-2961 10.1021/ct300377a
-
(2012)
J. Chem. Theory Comput.
, vol.8
, pp. 2949-2961
-
-
Vanwart, A.T.1
Eargle, J.2
Luthey-Schulten, Z.3
Amaro, R.E.4
-
69
-
-
84931277040
-
A Network of Molecular Switches Controls the Activation of the Two-Component Response Regulator NtrC
-
Vanatta, D. K.; Shukla, D.; Lawrenz, M.; Pande, V. S. A Network of Molecular Switches Controls the Activation of the Two-Component Response Regulator NtrC Nat. Commun. 2015, 6, 7283 10.1038/ncomms8283
-
(2015)
Nat. Commun.
, vol.6
, pp. 7283
-
-
Vanatta, D.K.1
Shukla, D.2
Lawrenz, M.3
Pande, V.S.4
-
70
-
-
0029916122
-
A Human Peptidyl-Prolyl Isomerase Essential for Regulation of Mitosis
-
Lu, K. P.; Hanes, S. D.; Hunter, T. A Human Peptidyl-Prolyl Isomerase Essential for Regulation of Mitosis Nature 1996, 380, 544-547 10.1038/380544a0
-
(1996)
Nature
, vol.380
, pp. 544-547
-
-
Lu, K.P.1
Hanes, S.D.2
Hunter, T.3
-
71
-
-
80053299231
-
Prolyl Isomerase Pin1 as a Molecular Switch to Determine the Fate of Phosphoproteins
-
Liou, Y. C.; Zhou, X. Z.; Lu, K. P. Prolyl Isomerase Pin1 as a Molecular Switch to Determine the Fate of Phosphoproteins Trends Biochem. Sci. 2011, 36, 501-514 10.1016/j.tibs.2011.07.001
-
(2011)
Trends Biochem. Sci.
, vol.36
, pp. 501-514
-
-
Liou, Y.C.1
Zhou, X.Z.2
Lu, K.P.3
-
72
-
-
0040017910
-
Function of Ww Domains as Phosphoserine-or Phosphothreonine-Binding Modules
-
Lu, P.-J.; Zhou, X. Z.; Shen, M.; Lu, K. P. Function of Ww Domains as Phosphoserine-or Phosphothreonine-Binding Modules Science 1999, 283, 1325-1328 10.1126/science.283.5406.1325
-
(1999)
Science
, vol.283
, pp. 1325-1328
-
-
Lu, P.-J.1
Zhou, X.Z.2
Shen, M.3
Lu, K.P.4
-
73
-
-
0033638180
-
Pin1-Dependent Prolyl Isomerization Regulates Dephosphorylation of Cdc25c and Tau Proteins
-
Zhou, X. Z.; Kops, O.; Werner, A.; Lu, P.-J.; Shen, M.; Stoller, G.; Küllertz, G.; Stark, M.; Fischer, G.; Lu, K. P. Pin1-Dependent Prolyl Isomerization Regulates Dephosphorylation of Cdc25c and Tau Proteins Mol. Cell 2000, 6, 873-883 10.1016/S1097-2765(05)00083-3
-
(2000)
Mol. Cell
, vol.6
, pp. 873-883
-
-
Zhou, X.Z.1
Kops, O.2
Werner, A.3
Lu, P.-J.4
Shen, M.5
Stoller, G.6
Küllertz, G.7
Stark, M.8
Fischer, G.9
Lu, K.P.10
-
74
-
-
0008233581
-
Structural and Functional Analysis of the Mitotic Rotamase Pin1 Suggests Substrate Recognition Is Phosphorylation Dependent
-
Ranganathan, R.; Lu, K. P.; Hunter, T.; Noel, J. P. Structural and Functional Analysis of the Mitotic Rotamase Pin1 Suggests Substrate Recognition Is Phosphorylation Dependent Cell 1997, 89, 875-886 10.1016/S0092-8674(00)80273-1
-
(1997)
Cell
, vol.89
, pp. 875-886
-
-
Ranganathan, R.1
Lu, K.P.2
Hunter, T.3
Noel, J.P.4
-
75
-
-
0033885803
-
Structural Basis for Phosphoserine-Proline Recognition by Group IV WW Domains
-
Verdecia, M. A.; Bowman, M. E.; Lu, K. P.; Hunter, T.; Noel, J. P. Structural Basis for Phosphoserine-Proline Recognition by Group IV WW Domains Nat. Struct. Biol. 2000, 7, 639-643 10.1038/77929
-
(2000)
Nat. Struct. Biol.
, vol.7
, pp. 639-643
-
-
Verdecia, M.A.1
Bowman, M.E.2
Lu, K.P.3
Hunter, T.4
Noel, J.P.5
-
76
-
-
84865249209
-
Structural and Kinetic Analysis of Prolyl-Isomerization/Phosphorylation Cross-Talk in the Ctd Code
-
Zhang, M.; Wang, X. J.; Chen, X.; Bowman, M. E.; Luo, Y.; Noel, J. P.; Ellington, A. D.; Etzkorn, F. A.; Zhang, Y. Structural and Kinetic Analysis of Prolyl-Isomerization/Phosphorylation Cross-Talk in the Ctd Code ACS Chem. Biol. 2012, 7, 1462-1470 10.1021/cb3000887
-
(2012)
ACS Chem. Biol.
, vol.7
, pp. 1462-1470
-
-
Zhang, M.1
Wang, X.J.2
Chen, X.3
Bowman, M.E.4
Luo, Y.5
Noel, J.P.6
Ellington, A.D.7
Etzkorn, F.A.8
Zhang, Y.9
-
77
-
-
0038342514
-
Peptide Binding Induces Large Scale Changes in Inter-Domain Mobility in Human Pin1
-
Jacobs, D. M.; Saxena, K.; Vogtherr, M.; Bernado, P.; Pons, M.; Fiebig, K. M. Peptide Binding Induces Large Scale Changes in Inter-Domain Mobility in Human Pin1 J. Biol. Chem. 2003, 278, 26174-26182 10.1074/jbc.M300796200
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 26174-26182
-
-
Jacobs, D.M.1
Saxena, K.2
Vogtherr, M.3
Bernado, P.4
Pons, M.5
Fiebig, K.M.6
-
78
-
-
84885429820
-
Transient Domain Interactions Enhance the Affinity of the Mitotic Regulator Pin1 toward Phosphorylated Peptide Ligands
-
Matena, A.; Sinnen, C.; van den Boom, J.; Wilms, C.; Dybowski, J. N.; Maltaner, R.; Mueller, J. W.; Link, N. M.; Hoffmann, D.; Bayer, P. Transient Domain Interactions Enhance the Affinity of the Mitotic Regulator Pin1 toward Phosphorylated Peptide Ligands Structure 2013, 21, 1769-1777 10.1016/j.str.2013.07.016
-
(2013)
Structure
, vol.21
, pp. 1769-1777
-
-
Matena, A.1
Sinnen, C.2
Van Den Boom, J.3
Wilms, C.4
Dybowski, J.N.5
Maltaner, R.6
Mueller, J.W.7
Link, N.M.8
Hoffmann, D.9
Bayer, P.10
-
79
-
-
33847656165
-
Substrate Recognition Reduces Side-Chain Flexibility for Conserved Hydrophobic Residues in Human Pin1
-
Namanja, A. T.; Peng, T.; Zintsmaster, J. S.; Elson, A. C.; Shakour, M. G.; Peng, J. W. Substrate Recognition Reduces Side-Chain Flexibility for Conserved Hydrophobic Residues in Human Pin1 Structure 2007, 15, 313-327 10.1016/j.str.2007.01.014
-
(2007)
Structure
, vol.15
, pp. 313-327
-
-
Namanja, A.T.1
Peng, T.2
Zintsmaster, J.S.3
Elson, A.C.4
Shakour, M.G.5
Peng, J.W.6
-
80
-
-
84885464669
-
Interdomain Interactions Support Interdomain Communication in Human Pin1
-
Wilson, K. A.; Bouchard, J. J.; Peng, J. W. Interdomain Interactions Support Interdomain Communication in Human Pin1 Biochemistry 2013, 52, 6968-6981 10.1021/bi401057x
-
(2013)
Biochemistry
, vol.52
, pp. 6968-6981
-
-
Wilson, K.A.1
Bouchard, J.J.2
Peng, J.W.3
-
81
-
-
84949204534
-
Negative Regulation of Peptidyl-Prolyl Isomerase Activity by Interdomain Contact in Human Pin1
-
Wang, X.; Mahoney, B. J.; Zhang, M.; Zintsmaster, J. S.; Peng, J. W. Negative Regulation of Peptidyl-Prolyl Isomerase Activity by Interdomain Contact in Human Pin1 Structure 2015, 23, 2224-2233 10.1016/j.str.2015.08.019
-
(2015)
Structure
, vol.23
, pp. 2224-2233
-
-
Wang, X.1
Mahoney, B.J.2
Zhang, M.3
Zintsmaster, J.S.4
Peng, J.W.5
-
82
-
-
84931275596
-
Dynamically Driven Protein Allostery Exhibits Disparate Responses for Fast and Slow Motions
-
Guo, J.; Zhou, H. X. Dynamically Driven Protein Allostery Exhibits Disparate Responses for Fast and Slow Motions Biophys. J. 2015, 108, 2771-2774 10.1016/j.bpj.2015.04.035
-
(2015)
Biophys. J.
, vol.108
, pp. 2771-2774
-
-
Guo, J.1
Zhou, H.X.2
-
84
-
-
0037938734
-
Substrate-Induced Changes in the Ammonia Channel for Imidazole Glycerol Phosphate Synthase
-
Myers, R. S.; Jensen, J. R.; Deras, I. L.; Smith, J. L.; Davisson, V. J. Substrate-Induced Changes in the Ammonia Channel for Imidazole Glycerol Phosphate Synthase Biochemistry 2003, 42, 7013-7022 10.1021/bi034314l
-
(2003)
Biochemistry
, vol.42
, pp. 7013-7022
-
-
Myers, R.S.1
Jensen, J.R.2
Deras, I.L.3
Smith, J.L.4
Davisson, V.J.5
-
85
-
-
0036175240
-
8 Barrel of the Imidazole Glycerol Phosphate Synthase Bienzyme Complex
-
8 Barrel of the Imidazole Glycerol Phosphate Synthase Bienzyme Complex Structure 2002, 10, 185-193 10.1016/S0969-2126(02)00702-5
-
(2002)
Structure
, vol.10
, pp. 185-193
-
-
Douangamath, A.1
Walker, M.2
Beismann-Driemeyer, S.3
Vega-Fernandez, M.C.4
Sterner, R.5
Wilmanns, M.6
-
86
-
-
84903393500
-
Mechanical Coupling Maintains the Fidelity of NMDA Receptor-Mediated Currents
-
Kazi, R.; Dai, J.; Sweeney, C.; Zhou, H. X.; Wollmuth, L. P. Mechanical Coupling Maintains the Fidelity of NMDA Receptor-Mediated Currents Nat. Neurosci. 2014, 17, 914-922 10.1038/nn.3724
-
(2014)
Nat. Neurosci.
, vol.17
, pp. 914-922
-
-
Kazi, R.1
Dai, J.2
Sweeney, C.3
Zhou, H.X.4
Wollmuth, L.P.5
-
87
-
-
33749029273
-
Pump-Probe Molecular Dynamics as a Tool for Studying Protein Motion and Long Range Coupling
-
Sharp, K.; Skinner, J. J. Pump-Probe Molecular Dynamics as a Tool for Studying Protein Motion and Long Range Coupling Proteins: Struct., Funct., Genet. 2006, 65, 347-361 10.1002/prot.21146
-
(2006)
Proteins: Struct., Funct., Genet.
, vol.65
, pp. 347-361
-
-
Sharp, K.1
Skinner, J.J.2
-
88
-
-
84918582756
-
Time-Resolved Serial Crystallography Captures High-Resolution Intermediates of Photoactive Yellow Protein
-
Tenboer, J.; Basu, S.; Zatsepin, N.; Pande, K.; Milathianaki, D.; Frank, M.; Hunter, M.; Boutet, S.; Williams, G. J.; Koglin, J. E. et al. Time-Resolved Serial Crystallography Captures High-Resolution Intermediates of Photoactive Yellow Protein Science 2014, 346, 1242-1246 10.1126/science.1259357
-
(2014)
Science
, vol.346
, pp. 1242-1246
-
-
Tenboer, J.1
Basu, S.2
Zatsepin, N.3
Pande, K.4
Milathianaki, D.5
Frank, M.6
Hunter, M.7
Boutet, S.8
Williams, G.J.9
Koglin, J.E.10
-
89
-
-
84944769107
-
Direct Observation of Ultrafast Collective Motions in CO Myoglobin Upon Ligand Dissociation
-
Barends, T. R.; Foucar, L.; Ardevol, A.; Nass, K.; Aquila, A.; Botha, S.; Doak, R. B.; Falahati, K.; Hartmann, E.; Hilpert, M. et al. Direct Observation of Ultrafast Collective Motions in CO Myoglobin Upon Ligand Dissociation Science 2015, 350, 445-450 10.1126/science.aac5492
-
(2015)
Science
, vol.350
, pp. 445-450
-
-
Barends, T.R.1
Foucar, L.2
Ardevol, A.3
Nass, K.4
Aquila, A.5
Botha, S.6
Doak, R.B.7
Falahati, K.8
Hartmann, E.9
Hilpert, M.10
-
90
-
-
84944790584
-
Disorder-to-Order Transition of an Active-Site Loop Mediates the Allosteric Activation of Sortase A
-
Pang, X.; Zhou, H. X. Disorder-to-Order Transition of an Active-Site Loop Mediates the Allosteric Activation of Sortase A Biophys. J. 2015, 109, 1706-1715 10.1016/j.bpj.2015.08.039
-
(2015)
Biophys. J.
, vol.109
, pp. 1706-1715
-
-
Pang, X.1
Zhou, H.X.2
-
91
-
-
77951591233
-
Allosteric Communication between cAMP Binding Sites in the RI Subunit of Protein Kinase a Revealed by NMR
-
Byeon, I. J.; Dao, K. K.; Jung, J.; Keen, J.; Leiros, I.; Doskeland, S. O.; Martinez, A.; Gronenborn, A. M. Allosteric Communication between cAMP Binding Sites in the RI Subunit of Protein Kinase a Revealed by NMR J. Biol. Chem. 2010, 285, 14062-14070 10.1074/jbc.M110.106666
-
(2010)
J. Biol. Chem.
, vol.285
, pp. 14062-14070
-
-
Byeon, I.J.1
Dao, K.K.2
Jung, J.3
Keen, J.4
Leiros, I.5
Doskeland, S.O.6
Martinez, A.7
Gronenborn, A.M.8
-
92
-
-
77952068200
-
Communication between Tandem cAMP Binding Domains in the Regulatory Subunit of Protein Kinase A-Iα as Revealed by Domain-Silencing Mutations
-
McNicholl, E. T.; Das, R.; SilDas, S.; Taylor, S. S.; Melacini, G. Communication between Tandem cAMP Binding Domains in the Regulatory Subunit of Protein Kinase A-Iα as Revealed by Domain-Silencing Mutations J. Biol. Chem. 2010, 285, 15523-15537 10.1074/jbc.M110.105783
-
(2010)
J. Biol. Chem.
, vol.285
, pp. 15523-15537
-
-
McNicholl, E.T.1
Das, R.2
SilDas, S.3
Taylor, S.S.4
Melacini, G.5
-
93
-
-
6344219895
-
Is Allostery an Intrinsic Property of All Dynamic Proteins?
-
Gunasekaran, K.; Ma, B. Y.; Nussinov, R. Is Allostery an Intrinsic Property of All Dynamic Proteins? Proteins: Struct., Funct., Genet. 2004, 57, 433-443 10.1002/prot.20232
-
(2004)
Proteins: Struct., Funct., Genet.
, vol.57
, pp. 433-443
-
-
Gunasekaran, K.1
Ma, B.Y.2
Nussinov, R.3
-
94
-
-
33746911627
-
Dynamic Coupling and Allosteric Behavior in a Nonallosteric Protein
-
Clarkson, M. W.; Gilmore, S. A.; Edgell, M. H.; Lee, A. L. Dynamic Coupling and Allosteric Behavior in a Nonallosteric Protein Biochemistry 2006, 45, 7693-7699 10.1021/bi060652l
-
(2006)
Biochemistry
, vol.45
, pp. 7693-7699
-
-
Clarkson, M.W.1
Gilmore, S.A.2
Edgell, M.H.3
Lee, A.L.4
-
95
-
-
84952690377
-
Detection of Secondary Binding Sites in Proteins Using Fragment Screening
-
Ludlow, R. F.; Verdonk, M. L.; Saini, H. K.; Tickle, I. J.; Jhoti, H. Detection of Secondary Binding Sites in Proteins Using Fragment Screening Proc. Natl. Acad. Sci. U.S.A. 2015, 112, 15910-15915 10.1073/pnas.1518946112
-
(2015)
Proc. Natl. Acad. Sci. U.S.A.
, vol.112
, pp. 15910-15915
-
-
Ludlow, R.F.1
Verdonk, M.L.2
Saini, H.K.3
Tickle, I.J.4
Jhoti, H.5
-
96
-
-
34347235156
-
Intrinsic Disorder as a Mechanism to Optimize Allosteric Coupling in Proteins
-
Hilser, V. J.; Thompson, E. B. Intrinsic Disorder as a Mechanism to Optimize Allosteric Coupling in Proteins Proc. Natl. Acad. Sci. U.S.A. 2007, 104, 8311-8315 10.1073/pnas.0700329104
-
(2007)
Proc. Natl. Acad. Sci. U.S.A.
, vol.104
, pp. 8311-8315
-
-
Hilser, V.J.1
Thompson, E.B.2
-
97
-
-
84879327823
-
Modulation of Allostery by Protein Intrinsic Disorder
-
Ferreon, A. C.; Ferreon, J. C.; Wright, P. E.; Deniz, A. A. Modulation of Allostery by Protein Intrinsic Disorder Nature 2013, 498, 390-394 10.1038/nature12294
-
(2013)
Nature
, vol.498
, pp. 390-394
-
-
Ferreon, A.C.1
Ferreon, J.C.2
Wright, P.E.3
Deniz, A.A.4
|