-
1
-
-
0022474905
-
Comparison of pH-Dependent Allostery and Dissociation for Phosphofructokinases from Artemia Embryos and Rabbit Muscle: Nature of the Enzymes Acylated with Diethylpyrocarbonate
-
Carpenter, J. F.; Hand, S. C. Comparison of pH-Dependent Allostery and Dissociation for Phosphofructokinases from Artemia Embryos and Rabbit Muscle: Nature of the Enzymes Acylated with Diethylpyrocarbonate Arch. Biochem. Biophys. 1986, 248, 1-9
-
(1986)
Arch. Biochem. Biophys.
, vol.248
, pp. 1-9
-
-
Carpenter, J.F.1
Hand, S.C.2
-
2
-
-
0030969449
-
Metal-Ion-Mediated Allosteric Triggering of Yeast Pyruvate Kinase. 1. A Multidimensional Kinetic Linked-Function Analysis
-
Mesecar, A. D.; Nowak, T. Metal-Ion-Mediated Allosteric Triggering of Yeast Pyruvate Kinase. 1. A Multidimensional Kinetic Linked-Function Analysis Biochemistry 1997, 36, 6792-6802
-
(1997)
Biochemistry
, vol.36
, pp. 6792-6802
-
-
Mesecar, A.D.1
Nowak, T.2
-
3
-
-
68249090787
-
Mapping of the Allosteric Network in the Regulation of Alpha-Isopropylmalate Synthase from Mycobacterium Tuberculosis by the Feedback Inhibitor L-Leucine: Solution-Phase H/D Exchange Monitored by FT-ICR Mass Spectrometry
-
Frantom, P. A.; Zhang, H. M.; Emmett, M. R.; Marshall, A. G.; Blanchard, J. S. Mapping of the Allosteric Network in the Regulation of Alpha-Isopropylmalate Synthase from Mycobacterium Tuberculosis by the Feedback Inhibitor L-Leucine: Solution-Phase H/D Exchange Monitored by FT-ICR Mass Spectrometry Biochemistry 2009, 48, 7457-7464
-
(2009)
Biochemistry
, vol.48
, pp. 7457-7464
-
-
Frantom, P.A.1
Zhang, H.M.2
Emmett, M.R.3
Marshall, A.G.4
Blanchard, J.S.5
-
4
-
-
0040524472
-
Still Looking for the Ivory Tower
-
Schachman, H. K. Still Looking for the Ivory Tower Annu. Rev. Biochem. 2000, 69, 1-29
-
(2000)
Annu. Rev. Biochem.
, vol.69
, pp. 1-29
-
-
Schachman, H.K.1
-
5
-
-
0014250308
-
Allosteric Interaction in Aspartate Transcarbamoylase. I. Binding of Specific Ligands to the Native Enzyme and Its Isolated Subunits
-
Changeux, J. P.; Gerhardt, J. C.; Schachman, H. K. Allosteric Interaction in Aspartate Transcarbamoylase. I. Binding of Specific Ligands to the Native Enzyme and Its Isolated Subunits Biochemistry 1968, 7, 531-538
-
(1968)
Biochemistry
, vol.7
, pp. 531-538
-
-
Changeux, J.P.1
Gerhardt, J.C.2
Schachman, H.K.3
-
6
-
-
0032475939
-
Temperature Effects on the Allosteric Responses of Native and Chimeric Aspartate Transcarbamoylases
-
Liu, L.; Wales, M. E.; Wild, J. R. Temperature Effects on the Allosteric Responses of Native and Chimeric Aspartate Transcarbamoylases J. Mol. Biol. 1998, 282, 891-901
-
(1998)
J. Mol. Biol.
, vol.282
, pp. 891-901
-
-
Liu, L.1
Wales, M.E.2
Wild, J.R.3
-
7
-
-
50449109973
-
Allostery: An Illustrated Definition for the 'Second Secret of Life'
-
Fenton, A. W. Allostery: An Illustrated Definition for the 'Second Secret of Life' Trends Biochem. Sci. 2008, 33, 420-425
-
(2008)
Trends Biochem. Sci.
, vol.33
, pp. 420-425
-
-
Fenton, A.W.1
-
8
-
-
80053129150
-
Allostery in Pharmacology: Thermodynamics, Evolution and Design
-
Maksay, G. Allostery in Pharmacology: Thermodynamics, Evolution and Design Prog. Biophys. Mol. Biol. 2011, 106, 463-473
-
(2011)
Prog. Biophys. Mol. Biol.
, vol.106
, pp. 463-473
-
-
Maksay, G.1
-
9
-
-
1542350030
-
Quantitative Analysis and Interpretation of Allosteric Behavior
-
Reinhart, G. D. Quantitative Analysis and Interpretation of Allosteric Behavior Methods Enzymol. 2004, 380, 187-203
-
(2004)
Methods Enzymol.
, vol.380
, pp. 187-203
-
-
Reinhart, G.D.1
-
10
-
-
0015528157
-
Ligand Binding and Internal Equilibria in Proteins
-
Weber, G. Ligand Binding and Internal Equilibria in Proteins Biochemistry 1972, 11, 864-878
-
(1972)
Biochemistry
, vol.11
, pp. 864-878
-
-
Weber, G.1
-
11
-
-
77953300897
-
Detection of Native-State Nonadditivity in Double Mutant Cycles Via Hydrogen Exchange
-
Boyer, J. A.; Clay, C. J.; Luce, K. S.; Edgell, M. H.; Lee, A. L. Detection of Native-State Nonadditivity in Double Mutant Cycles Via Hydrogen Exchange J. Am. Chem. Soc. 2010, 132, 8010-8019
-
(2010)
J. Am. Chem. Soc.
, vol.132
, pp. 8010-8019
-
-
Boyer, J.A.1
Clay, C.J.2
Luce, K.S.3
Edgell, M.H.4
Lee, A.L.5
-
12
-
-
0030322783
-
Double-Mutant Cycles: A Powerful Tool for Analyzing Protein Structure and Function
-
Horovitz, A. Double-Mutant Cycles: A Powerful Tool for Analyzing Protein Structure and Function Fold Des. 1996, 1, R121-126
-
(1996)
Fold Des.
, vol.1
, pp. 121-126
-
-
Horovitz, A.1
-
13
-
-
0021658956
-
Allostery without Conformational Change
-
Cooper, A.; Dryden, D. T. F. Allostery without Conformational Change Eur. Biophys. J. 1984, 11, 103-109
-
(1984)
Eur. Biophys. J.
, vol.11
, pp. 103-109
-
-
Cooper, A.1
Dryden, D.T.F.2
-
14
-
-
41149104308
-
Allostery: Absence of a Change in Shape Does Not Imply That Allostery Is Not at Play
-
Tsai, C. J.; del Sol, A.; Nussinov, R. Allostery: Absence of a Change in Shape Does Not Imply That Allostery Is Not at Play J. Mol. Biol. 2008, 378, 1-11
-
(2008)
J. Mol. Biol.
, vol.378
, pp. 1-11
-
-
Tsai, C.J.1
Del Sol, A.2
Nussinov, R.3
-
15
-
-
0013863816
-
Comparison of Experimental Binding Data and Theoretical Models in Proteins Containing Subunits
-
Koshland, D. E.; Nemethy, G.; Filmer, D. Comparison of Experimental Binding Data and Theoretical Models in Proteins Containing Subunits Biochemistry 1966, 5, 365-385
-
(1966)
Biochemistry
, vol.5
, pp. 365-385
-
-
Koshland, D.E.1
Nemethy, G.2
Filmer, D.3
-
16
-
-
78651189765
-
On the Nature of Allosteric Transitions: A Plausible Model
-
Monod, J.; Wyman, J.; Changeux, J.-P. On the Nature of Allosteric Transitions: A Plausible Model J. Mol. Biol. 1965, 12, 88-118
-
(1965)
J. Mol. Biol.
, vol.12
, pp. 88-118
-
-
Monod, J.1
Wyman, J.2
Changeux, J.-P.3
-
17
-
-
0034635971
-
Reevaluation of the Accepted Allosteric Mechanism of Phosphofructokinase from Bacillus Stearothermophilus
-
Kimmel, J. L.; Reinhart, G. D. Reevaluation of the Accepted Allosteric Mechanism of Phosphofructokinase from Bacillus Stearothermophilus Proc. Natl. Acad. Sci. U.S.A. 2000, 97, 3844-3849
-
(2000)
Proc. Natl. Acad. Sci. U.S.A.
, vol.97
, pp. 3844-3849
-
-
Kimmel, J.L.1
Reinhart, G.D.2
-
18
-
-
0024953088
-
Mechanisms of Cooperativity and Allosteric Regulation in Proteins
-
Perutz, M. F. Mechanisms of Cooperativity and Allosteric Regulation in Proteins Q. Rev. Biophys. 1989, 22, 139-237
-
(1989)
Q. Rev. Biophys.
, vol.22
, pp. 139-237
-
-
Perutz, M.F.1
-
19
-
-
84861371612
-
Structural and Energetic Basis of Allostery
-
Hilser, V. J.; Wrabl, J. O.; Motlagh, H. N. Structural and Energetic Basis of Allostery Annu. Rev. Biophys. 2012, 41, 585-609
-
(2012)
Annu. Rev. Biophys.
, vol.41
, pp. 585-609
-
-
Hilser, V.J.1
Wrabl, J.O.2
Motlagh, H.N.3
-
20
-
-
73649152457
-
Allosteric Proteins and Cellular Control Systems
-
Monod, J.; Changeux, J. P.; Jacob, F. Allosteric Proteins and Cellular Control Systems J. Mol. Biol. 1963, 6, 306-329
-
(1963)
J. Mol. Biol.
, vol.6
, pp. 306-329
-
-
Monod, J.1
Changeux, J.P.2
Jacob, F.3
-
21
-
-
84861889672
-
Allosteric Pathways in the Imidazole Glycerol Phosphate Synthase
-
Rivalta, I.; Sultan, M. M.; Lee, N.-S.; Manley, G.; Loria, J. P.; Batista, V. S. Allosteric Pathways in the Imidazole Glycerol Phosphate Synthase Proc. Natl. Acad. Sci. U.S.A. 2012, 109, E1428-E1436
-
(2012)
Proc. Natl. Acad. Sci. U.S.A.
, vol.109
-
-
Rivalta, I.1
Sultan, M.M.2
Lee, N.-S.3
Manley, G.4
Loria, J.P.5
Batista, V.S.6
-
22
-
-
84865063074
-
Exploring Residue Component Contributions to Dynamical Network Models of Allostery
-
Vanwart, A. T.; Eargle, J.; Luthey-Schulten, Z.; Amaro, R. E. Exploring Residue Component Contributions to Dynamical Network Models of Allostery J. Chem. Theory Comput. 2012, 8, 2949-2961
-
(2012)
J. Chem. Theory Comput.
, vol.8
, pp. 2949-2961
-
-
Vanwart, A.T.1
Eargle, J.2
Luthey-Schulten, Z.3
Amaro, R.E.4
-
23
-
-
0034919305
-
Nuclear Magnetic Resonance Methods for Quantifying Microsecond-to- Millisecond Motions in Biological Macromolecules
-
Palmer, A. G.; Kroenke, C. D.; Loria, J. P. Nuclear Magnetic Resonance Methods for Quantifying Microsecond-to-Millisecond Motions in Biological Macromolecules Methods Enzymol., Part B 2001, 339, 204-238
-
(2001)
Methods Enzymol., Part B
, vol.339
, pp. 204-238
-
-
Palmer, A.G.1
Kroenke, C.D.2
Loria, J.P.3
-
25
-
-
0030601792
-
Contributions to Conformational Entropy Arising from Bond Vector Fluctuations Measured from NMR-Derived Order Parameters: Application to Protein Folding
-
Yang, D.; Kay, L. E. Contributions to Conformational Entropy Arising from Bond Vector Fluctuations Measured from NMR-Derived Order Parameters: Application to Protein Folding J. Mol. Biol. 1996, 263, 369-382
-
(1996)
J. Mol. Biol.
, vol.263
, pp. 369-382
-
-
Yang, D.1
Kay, L.E.2
-
26
-
-
0030473440
-
Insights into the Local Residual Entropy of Proteins Provided by Nmr Relaxation
-
Li, Z.; Raychaudhuri, S.; Wand, A. J. Insights into the Local Residual Entropy of Proteins Provided by Nmr Relaxation Protein Sci. 1996, 5, 2647-2650
-
(1996)
Protein Sci.
, vol.5
, pp. 2647-2650
-
-
Li, Z.1
Raychaudhuri, S.2
Wand, A.J.3
-
27
-
-
0030299991
-
15N NMR Relaxation Studies of Free and Inhibitor-Bound 4-Oxalocrotonate Tautomerase: Backbone Dynamics and Entropy Changes of an Enzyme Upon Inhibitor Binding
-
15N NMR Relaxation Studies of Free and Inhibitor-Bound 4-Oxalocrotonate Tautomerase: Backbone Dynamics and Entropy Changes of an Enzyme Upon Inhibitor Binding Biochemistry 1996, 35, 16036-16047
-
(1996)
Biochemistry
, vol.35
, pp. 16036-16047
-
-
Stivers, J.T.1
Abeygunawardana, C.2
Mildvan, A.S.3
-
28
-
-
33748363077
-
Dynamically Driven Protein Allostery
-
Popovych, N.; Sun, S.; Ebright, R. H.; Kalodimos, C. G. Dynamically Driven Protein Allostery Nat. Struct. Mol. Biol. 2006, 13, 831-838
-
(2006)
Nat. Struct. Mol. Biol.
, vol.13
, pp. 831-838
-
-
Popovych, N.1
Sun, S.2
Ebright, R.H.3
Kalodimos, C.G.4
-
29
-
-
33846998346
-
Probing Side-Chain Dynamics in the Proteasome by Relaxation Violated Coherence Transfer Nmr Spectroscopy
-
Tugarinov, V.; Sprangers, R.; Kay, L. E. Probing Side-Chain Dynamics in the Proteasome by Relaxation Violated Coherence Transfer Nmr Spectroscopy J. Am. Chem. Soc. 2007, 129, 1743-1750
-
(2007)
J. Am. Chem. Soc.
, vol.129
, pp. 1743-1750
-
-
Tugarinov, V.1
Sprangers, R.2
Kay, L.E.3
-
30
-
-
36849127400
-
Nuclear Magnetic Resonance Study of the Protolysis of Trimethylammonium Ion in Aqueous Solution -Order of the Reaction with Respect to Solvent
-
Luz, Z.; Meiboom, S. Nuclear Magnetic Resonance Study of the Protolysis of Trimethylammonium Ion in Aqueous Solution-Order of the Reaction with Respect to Solvent J. Chem. Phys. 1963, 39, 366-370
-
(1963)
J. Chem. Phys.
, vol.39
, pp. 366-370
-
-
Luz, Z.1
Meiboom, S.2
-
31
-
-
0033577288
-
A Relaxation-Compensated Carr-Purcell-Meiboom-Gill Sequence for Characterizing Chemical Exchange by Nmr Spectroscopy
-
Loria, J. P.; Rance, M.; Palmer, A. G. A Relaxation-Compensated Carr-Purcell-Meiboom-Gill Sequence for Characterizing Chemical Exchange by Nmr Spectroscopy J. Am. Chem. Soc. 1999, 121, 2331-2332
-
(1999)
J. Am. Chem. Soc.
, vol.121
, pp. 2331-2332
-
-
Loria, J.P.1
Rance, M.2
Palmer, A.G.3
-
32
-
-
1842503159
-
Carbonyl Carbon Transverse Relaxation Dispersion Measurements and Ms-Ms Timescale Motion in a Protein Hydrogen Bond Network
-
Ishima, R.; Baber, J.; Louis, J. M.; Torchia, D. A. Carbonyl Carbon Transverse Relaxation Dispersion Measurements and Ms-Ms Timescale Motion in a Protein Hydrogen Bond Network J. Biomol. NMR 2004, 29, 187-198
-
(2004)
J. Biomol. NMR
, vol.29
, pp. 187-198
-
-
Ishima, R.1
Baber, J.2
Louis, J.M.3
Torchia, D.A.4
-
33
-
-
0037355721
-
Extending the Range of Amide Proton Relaxation Dispersion Experiments in Proteins Using a Constant-Time Relaxation Compensated Cpmg Approach
-
Ishima, R.; Torchia, D. Extending the Range of Amide Proton Relaxation Dispersion Experiments in Proteins Using a Constant-Time Relaxation Compensated Cpmg Approach J. Biomol. NMR 2003, 25, 243-248
-
(2003)
J. Biomol. NMR
, vol.25
, pp. 243-248
-
-
Ishima, R.1
Torchia, D.2
-
34
-
-
2942592052
-
Multiple-Quantum Relaxation Dispersion NMR Spectroscopy Probing Millisecond Time-Scale Dynamics in Proteins: Theory and Application
-
Korzhnev, D. M.; Kloiber, K.; Kay, L. E. Multiple-Quantum Relaxation Dispersion NMR Spectroscopy Probing Millisecond Time-Scale Dynamics in Proteins: Theory and Application J. Am. Chem. Soc. 2004, 126, 7320-7329
-
(2004)
J. Am. Chem. Soc.
, vol.126
, pp. 7320-7329
-
-
Korzhnev, D.M.1
Kloiber, K.2
Kay, L.E.3
-
36
-
-
0035819455
-
Measurement of Slow (Micros-Ms) Time Scale Dynamics in Protein Side Chains by (15)N Relaxation Dispersion Nmr Spectroscopy: Application to Asn and Gln Residues in a Cavity Mutant of T4 Lysozyme
-
Mulder, F. A.; Skrynnikov, N. R.; Hon, B.; Dahlquist, F. W.; Kay, L. E. Measurement of Slow (Micros-Ms) Time Scale Dynamics in Protein Side Chains by (15)N Relaxation Dispersion Nmr Spectroscopy: Application to Asn and Gln Residues in a Cavity Mutant of T4 Lysozyme J. Am. Chem. Soc. 2001, 123, 967-975
-
(2001)
J. Am. Chem. Soc.
, vol.123
, pp. 967-975
-
-
Mulder, F.A.1
Skrynnikov, N.R.2
Hon, B.3
Dahlquist, F.W.4
Kay, L.E.5
-
37
-
-
0034730994
-
Molecular Motions and Protein Folding: Characterization of the Backbone Dynamics and Folding Equilibrium of Alpha D-2 Using C-13 NMR Spin Relaxation
-
Hill, R. B.; Bracken, C.; DeGrado, W. F.; Palmer, A. G. Molecular Motions and Protein Folding: Characterization of the Backbone Dynamics and Folding Equilibrium of Alpha D-2 Using C-13 NMR Spin Relaxation J. Am. Chem. Soc. 2000, 122, 11610-11619
-
(2000)
J. Am. Chem. Soc.
, vol.122
, pp. 11610-11619
-
-
Hill, R.B.1
Bracken, C.2
Degrado, W.F.3
Palmer, A.G.4
-
38
-
-
69049092695
-
Measurement of Methyl Axis Orientations in Invisible, Excited States of Proteins by Relaxation Dispersion Nmr Spectroscopy
-
Baldwin, A. J.; Hansen, D. F.; Vallurupalli, P.; Kay, L. E. Measurement of Methyl Axis Orientations in Invisible, Excited States of Proteins by Relaxation Dispersion Nmr Spectroscopy J. Am. Chem. Soc. 2009, 131, 11939-11948
-
(2009)
J. Am. Chem. Soc.
, vol.131
, pp. 11939-11948
-
-
Baldwin, A.J.1
Hansen, D.F.2
Vallurupalli, P.3
Kay, L.E.4
-
39
-
-
77955567725
-
(13)Chd(2) Methyl Group Probes of Millisecond Time Scale Exchange in Proteins by (1)H Relaxation Dispersion: An Application to Proteasome Gating Residue Dynamics
-
Baldwin, A. J.; Religa, T. L.; Hansen, D. F.; Bouvignies, G.; Kay, L. E. (13)Chd(2) Methyl Group Probes of Millisecond Time Scale Exchange in Proteins by (1)H Relaxation Dispersion: An Application to Proteasome Gating Residue Dynamics J. Am. Chem. Soc. 2010, 132, 10992-10995
-
(2010)
J. Am. Chem. Soc.
, vol.132
, pp. 10992-10995
-
-
Baldwin, A.J.1
Religa, T.L.2
Hansen, D.F.3
Bouvignies, G.4
Kay, L.E.5
-
40
-
-
78649509231
-
Probing Microsecond Time Scale Dynamics in Proteins by Methyl (1)H Carr-Purcell-Meiboom-Gill Relaxation Dispersion NMR Measurements. Application to Activation of the Signaling Protein Ntrc(R)
-
Otten, R.; Villali, J.; Kern, D.; Mulder, F. A. Probing Microsecond Time Scale Dynamics in Proteins by Methyl (1)H Carr-Purcell-Meiboom-Gill Relaxation Dispersion NMR Measurements. Application to Activation of the Signaling Protein Ntrc(R) J. Am. Chem. Soc. 2010, 132, 17004-17014
-
(2010)
J. Am. Chem. Soc.
, vol.132
, pp. 17004-17014
-
-
Otten, R.1
Villali, J.2
Kern, D.3
Mulder, F.A.4
-
41
-
-
0034809982
-
Probing Slow Time Scale Dynamics at Methyl-Containing Side Chains in Proteins by Relaxation Dispersion NMR Measurements: Application to Methionine Residues in a Cavity Mutant of T4 Lysozyme
-
Skrynnikov, N. R.; Mulder, F. A.; Hon, B.; Dahlquist, F. W.; Kay, L. E. Probing Slow Time Scale Dynamics at Methyl-Containing Side Chains in Proteins by Relaxation Dispersion NMR Measurements: Application to Methionine Residues in a Cavity Mutant of T4 Lysozyme J. Am. Chem. Soc. 2001, 123, 4556-4566
-
(2001)
J. Am. Chem. Soc.
, vol.123
, pp. 4556-4566
-
-
Skrynnikov, N.R.1
Mulder, F.A.2
Hon, B.3
Dahlquist, F.W.4
Kay, L.E.5
-
42
-
-
34547661653
-
Separating Degenerate (1)H Transitions in Methyl Group Probes for Single-Quantum (1)H-Cpmg Relaxation Dispersion NMR Spectroscopy
-
Tugarinov, V.; Kay, L. E. Separating Degenerate (1)H Transitions in Methyl Group Probes for Single-Quantum (1)H-Cpmg Relaxation Dispersion NMR Spectroscopy J. Am. Chem. Soc. 2007, 129, 9514-9521
-
(2007)
J. Am. Chem. Soc.
, vol.129
, pp. 9514-9521
-
-
Tugarinov, V.1
Kay, L.E.2
-
43
-
-
1642416319
-
Probing Slow Dynamics in High Molecular Weight Proteins by Methyl-Trosy NMR Spectroscopy: Application to a 723-Residue Enzyme
-
Korzhnev, D. M.; Kloiber, K.; Kanelis, V.; Tugarinov, V.; Kay, L. E. Probing Slow Dynamics in High Molecular Weight Proteins by Methyl-Trosy NMR Spectroscopy: Application to a 723-Residue Enzyme J. Am. Chem. Soc. 2004, 126, 3964-3973
-
(2004)
J. Am. Chem. Soc.
, vol.126
, pp. 3964-3973
-
-
Korzhnev, D.M.1
Kloiber, K.2
Kanelis, V.3
Tugarinov, V.4
Kay, L.E.5
-
44
-
-
0021104755
-
Molecular Dynamics of Native Protein. II. Analysis and Nature of Motion
-
Levitt, M. Molecular Dynamics of Native Protein. II. Analysis and Nature of Motion J. Mol. Biol. 1983, 168, 621-657
-
(1983)
J. Mol. Biol.
, vol.168
, pp. 621-657
-
-
Levitt, M.1
-
45
-
-
0024406542
-
A Molecular Dynamics Analysis of Protein Structural Elements
-
Post, C. B.; Dobson, C. M.; Karplus, M. A Molecular Dynamics Analysis of Protein Structural Elements Proteins 1989, 5, 335-354
-
(1989)
Proteins
, vol.5
, pp. 335-354
-
-
Post, C.B.1
Dobson, C.M.2
Karplus, M.3
-
46
-
-
0029092698
-
Fluctuation and Cross-Correlation Analysis of Protein Motions Observed in Nanosecond Molecular Dynamics Simulations
-
Hünenberger, P. H.; Mark, A. E.; van Gunsteren, W. F. Fluctuation and Cross-Correlation Analysis of Protein Motions Observed in Nanosecond Molecular Dynamics Simulations J. Mol. Biol. 1995, 252, 492-503
-
(1995)
J. Mol. Biol.
, vol.252
, pp. 492-503
-
-
Hünenberger, P.H.1
Mark, A.E.2
Van Gunsteren, W.F.3
-
47
-
-
0026076090
-
Collective Motions in Proteins: A Covariance Analysis of Atomic Fluctuations in Molecular Dynamics and Normal Mode Simulations
-
Ichiye, T.; Karplus, M. Collective Motions in Proteins: A Covariance Analysis of Atomic Fluctuations in Molecular Dynamics and Normal Mode Simulations Proteins: Struct. Funct. Genet. 1991, 11, 205-217
-
(1991)
Proteins: Struct. Funct. Genet.
, vol.11
, pp. 205-217
-
-
Ichiye, T.1
Karplus, M.2
-
48
-
-
33644847828
-
Generalized Correlation for Biomolecular Dynamics
-
Lange, O. F.; Grubmuller, H. Generalized Correlation for Biomolecular Dynamics Proteins 2006, 62, 1053-1061
-
(2006)
Proteins
, vol.62
, pp. 1053-1061
-
-
Lange, O.F.1
Grubmuller, H.2
-
49
-
-
84856043672
-
A Mathematical Theory of Communication
-
Shannon, C. E. A Mathematical Theory of Communication Bell Syst. Tech. J. 1948, 27, 379-423 623-656.
-
(1948)
Bell Syst. Tech. J.
, vol.27
-
-
Shannon, C.E.1
-
50
-
-
66149086947
-
Dynamical Networks in Trna:Protein Complexes
-
Sethi, A.; Eargle, J.; Black, A. A.; Luthey-Schulten, Z. Dynamical Networks in Trna:Protein Complexes Proc. Natl. Acad. Sci. U.S.A. 2009, 106, 6620-6625
-
(2009)
Proc. Natl. Acad. Sci. U.S.A.
, vol.106
, pp. 6620-6625
-
-
Sethi, A.1
Eargle, J.2
Black, A.A.3
Luthey-Schulten, Z.4
-
51
-
-
0037062448
-
Community Structure in Social and Biological Networks
-
Girvan, M.; Newman, M. E. Community Structure in Social and Biological Networks Proc. Natl. Acad. Sci. U.S.A. 2002, 99, 7821-7826
-
(2002)
Proc. Natl. Acad. Sci. U.S.A.
, vol.99
, pp. 7821-7826
-
-
Girvan, M.1
Newman, M.E.2
-
52
-
-
37649028224
-
Finding and Evaluating Community Structure in Networks
-
Newman, M. E.; Girvan, M. Finding and Evaluating Community Structure in Networks Phys. Rev. E 2004, 69, 026113
-
(2004)
Phys. Rev. e
, vol.69
, pp. 026113
-
-
Newman, M.E.1
Girvan, M.2
-
53
-
-
78649766072
-
Nanometer Propagation of Millisecond Motions in V-Type Allostery
-
Lipchock, J. M.; Loria, J. P. Nanometer Propagation of Millisecond Motions in V-Type Allostery Structure 2010, 18, 1596-1607
-
(2010)
Structure
, vol.18
, pp. 1596-1607
-
-
Lipchock, J.M.1
Loria, J.P.2
-
54
-
-
23244441019
-
Reaction Coupling through Interdomain Contacts in Imidazole Glycerol Phosphate Synthase
-
Myers, R. S.; Amaro, R. E.; Luthey-Schulten, Z. A.; Davisson, V. J. Reaction Coupling through Interdomain Contacts in Imidazole Glycerol Phosphate Synthase Biochemistry 2005, 44, 11974-11985
-
(2005)
Biochemistry
, vol.44
, pp. 11974-11985
-
-
Myers, R.S.1
Amaro, R.E.2
Luthey-Schulten, Z.A.3
Davisson, V.J.4
-
55
-
-
0037938734
-
Substrate-Induced Changes in the Ammonia Channel for Imidazole Glycerol Phosphate Synthase
-
Myers, R. S.; Jensen, J. R.; Deras, I. L.; Smith, J. L.; Davisson, V. J. Substrate-Induced Changes in the Ammonia Channel for Imidazole Glycerol Phosphate Synthase Biochemistry 2003, 42, 7013-7022
-
(2003)
Biochemistry
, vol.42
, pp. 7013-7022
-
-
Myers, R.S.1
Jensen, J.R.2
Deras, I.L.3
Smith, J.L.4
Davisson, V.J.5
-
56
-
-
0034793603
-
Crystal Structure of Imidazole Glycerol Phosphate Synthase: A Tunnel through a (Beta/Alpha)8 Barrel Joins Two Active Sites
-
Chaudhuri, B. N.; Lange, S. C.; Myers, R. S.; Chittur, S. V.; Davisson, V. J.; Smith, J. L. Crystal Structure of Imidazole Glycerol Phosphate Synthase: A Tunnel through a (Beta/Alpha)8 Barrel Joins Two Active Sites Structure 2001, 9, 987-997
-
(2001)
Structure
, vol.9
, pp. 987-997
-
-
Chaudhuri, B.N.1
Lange, S.C.2
Myers, R.S.3
Chittur, S.V.4
Davisson, V.J.5
Smith, J.L.6
-
57
-
-
0036175240
-
Structural Evidence for Ammonia Tunneling across the (Beta Alpha)(8) Barrel of the Imidazole Glycerol Phosphate Synthase Bienzyme Complex
-
Douangamath, A.; Walker, M.; Beismann-Driemeyer, S.; Vega-Fernandez, M. C.; Sterner, R.; Wilmanns, M. Structural Evidence for Ammonia Tunneling across the (Beta Alpha)(8) Barrel of the Imidazole Glycerol Phosphate Synthase Bienzyme Complex Structure 2002, 10, 185-193
-
(2002)
Structure
, vol.10
, pp. 185-193
-
-
Douangamath, A.1
Walker, M.2
Beismann-Driemeyer, S.3
Vega-Fernandez, M.C.4
Sterner, R.5
Wilmanns, M.6
-
58
-
-
36549013217
-
Conformational Changes in Ammonia-Channeling Glutamine Amidotransferases
-
Mouilleron, S.; Golinelli-Pimpaneau, B. Conformational Changes in Ammonia-Channeling Glutamine Amidotransferases Curr. Opin. Struct. Biol. 2007, 17, 653-664
-
(2007)
Curr. Opin. Struct. Biol.
, vol.17
, pp. 653-664
-
-
Mouilleron, S.1
Golinelli-Pimpaneau, B.2
-
59
-
-
0038614879
-
Toward Understanding the Mechanism of the Complex Cyclization Reaction Catalyzed by Imidazole Glycerolphosphate Synthase: Crystal Structures of a Ternary Complex and the Free Enzyme
-
Chaudhuri, B. N.; Lange, S. C.; Myers, R. S.; Davisson, V. J.; Smith, J. L. Toward Understanding the Mechanism of the Complex Cyclization Reaction Catalyzed by Imidazole Glycerolphosphate Synthase: Crystal Structures of a Ternary Complex and the Free Enzyme Biochemistry 2003, 42, 7003-7012
-
(2003)
Biochemistry
, vol.42
, pp. 7003-7012
-
-
Chaudhuri, B.N.1
Lange, S.C.2
Myers, R.S.3
Davisson, V.J.4
Smith, J.L.5
-
60
-
-
0038325358
-
Structure of Imidazole Glycerol Phosphate Synthase from Thermus Thermophilus Hb8: Open-Closed Conformational Change and Ammonia Tunneling
-
Omi, R.; Mizuguchi, H.; Goto, M.; Miyahara, I.; Hayashi, H.; Kagamiyama, H.; Hirotsu, K. Structure of Imidazole Glycerol Phosphate Synthase from Thermus Thermophilus Hb8: Open-Closed Conformational Change and Ammonia Tunneling J Biochem. 2002, 132, 759-765
-
(2002)
J Biochem.
, vol.132
, pp. 759-765
-
-
Omi, R.1
Mizuguchi, H.2
Goto, M.3
Miyahara, I.4
Hayashi, H.5
Kagamiyama, H.6
Hirotsu, K.7
-
61
-
-
64649089001
-
Allostery in Hsp70 Chaperones Is Transduced by Subdomain Rotations
-
Bhattacharya, A.; Kurochkin, A. V.; Yip, G. N. B.; Zhang, Y.; Bertelsen, E. B.; Zuiderweg, E. R. P. Allostery in Hsp70 Chaperones Is Transduced by Subdomain Rotations J. Mol. Biol. 2009, 388, 475-490
-
(2009)
J. Mol. Biol.
, vol.388
, pp. 475-490
-
-
Bhattacharya, A.1
Kurochkin, A.V.2
Yip, G.N.B.3
Zhang, Y.4
Bertelsen, E.B.5
Zuiderweg, E.R.P.6
-
62
-
-
0037457899
-
Quaternary Structure of Hemoglobin in Solution
-
Lukin, J. A.; Kontaxis, G.; Simplaceanu, V.; Yuan, Y.; Bax, A.; Ho, C. Quaternary Structure of Hemoglobin in Solution Proc. Natl. Acad. Sci. U.S.A. 2003, 21, 517-520
-
(2003)
Proc. Natl. Acad. Sci. U.S.A.
, vol.21
, pp. 517-520
-
-
Lukin, J.A.1
Kontaxis, G.2
Simplaceanu, V.3
Yuan, Y.4
Bax, A.5
Ho, C.6
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