-
1
-
-
33947260230
-
Molecular mechanisms of antibacterial multidrug resistance
-
1 Alekshun, M.N., Levy, S.B., Molecular mechanisms of antibacterial multidrug resistance. Cell 128 (2007), 1037–1050.
-
(2007)
Cell
, vol.128
, pp. 1037-1050
-
-
Alekshun, M.N.1
Levy, S.B.2
-
2
-
-
84937523283
-
Evolutionary consequences of drug resistance: shared principles across diverse targets and organisms
-
2 Hughes, D., Andersson, D.I., Evolutionary consequences of drug resistance: shared principles across diverse targets and organisms. Nat. Rev. Genet. 16 (2015), 459–471.
-
(2015)
Nat. Rev. Genet.
, vol.16
, pp. 459-471
-
-
Hughes, D.1
Andersson, D.I.2
-
3
-
-
24044514016
-
Efflux-mediated antimicrobial resistance
-
3 Poole, K., Efflux-mediated antimicrobial resistance. J. Antimicrob. Chemother. 56 (2005), 20–51.
-
(2005)
J. Antimicrob. Chemother.
, vol.56
, pp. 20-51
-
-
Poole, K.1
-
4
-
-
33644775686
-
Targeting multidrug resistance in cancer
-
4 Szakacs, G., et al. Targeting multidrug resistance in cancer. Nat. Rev. Drug Discov. 5 (2006), 219–234.
-
(2006)
Nat. Rev. Drug Discov.
, vol.5
, pp. 219-234
-
-
Szakacs, G.1
-
6
-
-
0036882392
-
Viral proteases
-
6 Tong, L., Viral proteases. Chem. Rev. 102 (2002), 4609–4626.
-
(2002)
Chem. Rev.
, vol.102
, pp. 4609-4626
-
-
Tong, L.1
-
7
-
-
84855998457
-
Global landscape of HIV-human protein complexes
-
7 Jager, S., et al. Global landscape of HIV-human protein complexes. Nature 481 (2012), 365–370.
-
(2012)
Nature
, vol.481
, pp. 365-370
-
-
Jager, S.1
-
8
-
-
0035818541
-
HIV-1 protease cleaves eukaryotic initiation factor 4G and inhibits cap-dependent translation
-
8 Ventoso, I., et al. HIV-1 protease cleaves eukaryotic initiation factor 4G and inhibits cap-dependent translation. Proc. Natl. Acad. Sci. U.S.A. 98 (2001), 12966–12971.
-
(2001)
Proc. Natl. Acad. Sci. U.S.A.
, vol.98
, pp. 12966-12971
-
-
Ventoso, I.1
-
9
-
-
0037687422
-
Regulation of interferon regulatory factor-3 by the hepatitis C virus serine protease
-
9 Foy, E., et al. Regulation of interferon regulatory factor-3 by the hepatitis C virus serine protease. Science 300 (2003), 1145–1148.
-
(2003)
Science
, vol.300
, pp. 1145-1148
-
-
Foy, E.1
-
10
-
-
0033954256
-
The Protein Data Bank
-
10 Berman, H.M., et al. The Protein Data Bank. Nucleic Acids Res. 28 (2000), 235–242.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 235-242
-
-
Berman, H.M.1
-
11
-
-
0037250521
-
Human immunodeficiency virus reverse transcriptase and protease sequence database
-
11 Rhee, S.Y., et al. Human immunodeficiency virus reverse transcriptase and protease sequence database. Nucleic Acids Res. 31 (2003), 298–303.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 298-303
-
-
Rhee, S.Y.1
-
12
-
-
0032507027
-
Improved survival among HIV-infected individuals following initiation of antiretroviral therapy
-
12 Hogg, R.S., et al. Improved survival among HIV-infected individuals following initiation of antiretroviral therapy. JAMA 279 (1998), 450–454.
-
(1998)
JAMA
, vol.279
, pp. 450-454
-
-
Hogg, R.S.1
-
13
-
-
0003189083
-
Decline in deaths from AIDS due to new antiretrovirals
-
13 Hogg, R.S., et al. Decline in deaths from AIDS due to new antiretrovirals. Lancet, 349, 1997, 1294.
-
(1997)
Lancet
, vol.349
, pp. 1294
-
-
Hogg, R.S.1
-
14
-
-
2642709177
-
Declining morbidity and mortality among patients with advanced human immunodeficiency virus infection
-
14 Palella, F.J., et al. Declining morbidity and mortality among patients with advanced human immunodeficiency virus infection. N. Engl. J. Med. 338 (1998), 853–860.
-
(1998)
N. Engl. J. Med.
, vol.338
, pp. 853-860
-
-
Palella, F.J.1
-
15
-
-
34250679750
-
Epidemiology of hepatitis C virus infection
-
15 Alter, M.J., Epidemiology of hepatitis C virus infection. World J. Gastroenterol. 13 (2007), 2436–2441.
-
(2007)
World J. Gastroenterol.
, vol.13
, pp. 2436-2441
-
-
Alter, M.J.1
-
16
-
-
37349020028
-
Hepatitis C: a clinical review
-
16 Modi, A.A., Liang, T.J., Hepatitis C: a clinical review. Oral Dis. 14 (2008), 10–14.
-
(2008)
Oral Dis.
, vol.14
, pp. 10-14
-
-
Modi, A.A.1
Liang, T.J.2
-
17
-
-
84904647749
-
ABT-450, ritonavir, ombitasvir, and dasabuvir achieves 97% and 100% sustained virologic response with or without ribavirin in treatment-experienced patients with HCV genotype 1b infection
-
359–365.e1
-
17 Andreone, P., et al. ABT-450, ritonavir, ombitasvir, and dasabuvir achieves 97% and 100% sustained virologic response with or without ribavirin in treatment-experienced patients with HCV genotype 1b infection. Gastroenterology, 147, 2014 359–365.e1.
-
(2014)
Gastroenterology
, vol.147
-
-
Andreone, P.1
-
18
-
-
80755159054
-
Discovery and development of telaprevir: an NS3-4A protease inhibitor for treating genotype 1 chronic hepatitis C virus
-
18 Kwong, A.D., et al. Discovery and development of telaprevir: an NS3-4A protease inhibitor for treating genotype 1 chronic hepatitis C virus. Nat. Biotechnol. 29 (2011), 993–1003.
-
(2011)
Nat. Biotechnol.
, vol.29
, pp. 993-1003
-
-
Kwong, A.D.1
-
19
-
-
33644639990
-
SCH 503034, a mechanism-based inhibitor of hepatitis C virus NS3 protease, suppresses polyprotein maturation and enhances the antiviral activity of alpha interferon in replicon cells
-
19 Malcolm, B.A., et al. SCH 503034, a mechanism-based inhibitor of hepatitis C virus NS3 protease, suppresses polyprotein maturation and enhances the antiviral activity of alpha interferon in replicon cells. Antimicrob. Agents Chemother. 50 (2006), 1013–1020.
-
(2006)
Antimicrob. Agents Chemother.
, vol.50
, pp. 1013-1020
-
-
Malcolm, B.A.1
-
20
-
-
33644636312
-
Preclinical profile of VX-950, a potent, selective, and orally bioavailable inhibitor of hepatitis C virus NS3-4A serine protease
-
20 Perni, R.B., et al. Preclinical profile of VX-950, a potent, selective, and orally bioavailable inhibitor of hepatitis C virus NS3-4A serine protease. Antimicrob. Agents Chemother. 50 (2006), 899–909.
-
(2006)
Antimicrob. Agents Chemother.
, vol.50
, pp. 899-909
-
-
Perni, R.B.1
-
21
-
-
84896266984
-
Discovery and development of Simeprevir (TMC435), a HCV NS3/4A protease inhibitor
-
21 Rosenquist, Å., et al. Discovery and development of Simeprevir (TMC435), a HCV NS3/4A protease inhibitor. J. Med. Chem. 57 (2014), 1673–1693.
-
(2014)
J. Med. Chem.
, vol.57
, pp. 1673-1693
-
-
Rosenquist, Å.1
-
22
-
-
79958830099
-
Hepatitis C virus resistance to protease inhibitors
-
22 Halfon, P., Locarnini, S., Hepatitis C virus resistance to protease inhibitors. J. Hepatol. 55 (2011), 192–206.
-
(2011)
J. Hepatol.
, vol.55
, pp. 192-206
-
-
Halfon, P.1
Locarnini, S.2
-
23
-
-
84863438978
-
Understanding the drug resistance mechanism of hepatitis C virus NS3/4A to ITMN-191 due to R155K, A156 V, 68A/E mutations: a computational study
-
23 Pan, D., et al. Understanding the drug resistance mechanism of hepatitis C virus NS3/4A to ITMN-191 due to R155K, A156 V, 68A/E mutations: a computational study. Biochim. Biophys. Acta 1820 (2012), 1526–1534.
-
(2012)
Biochim. Biophys. Acta
, vol.1820
, pp. 1526-1534
-
-
Pan, D.1
-
24
-
-
84864602817
-
The molecular basis of drug resistance against hepatitis C virus NS3/4A protease inhibitors
-
24 Romano, K.P., et al. The molecular basis of drug resistance against hepatitis C virus NS3/4A protease inhibitors. PLoS Pathog., 8, 2012, e1002832.
-
(2012)
PLoS Pathog.
, vol.8
, pp. e1002832
-
-
Romano, K.P.1
-
25
-
-
84892761609
-
Efficacy of an interferon- and ribavirin-free regimen of daclatasvir, asunaprevir, and BMS-791325 in treatment-naive patients with HCV genotype 1 infection
-
25 Everson, G.T., et al. Efficacy of an interferon- and ribavirin-free regimen of daclatasvir, asunaprevir, and BMS-791325 in treatment-naive patients with HCV genotype 1 infection. Gastroenterology 146 (2014), 420–429.
-
(2014)
Gastroenterology
, vol.146
, pp. 420-429
-
-
Everson, G.T.1
-
26
-
-
84943821376
-
Interferon-free, direct-acting antiviral therapy for chronic hepatitis C
-
26 Gutierrez, J.A., et al. Interferon-free, direct-acting antiviral therapy for chronic hepatitis C. J. Viral Hepat. 22 (2015), 861–870.
-
(2015)
J. Viral Hepat.
, vol.22
, pp. 861-870
-
-
Gutierrez, J.A.1
-
27
-
-
84925424553
-
Efficacy and safety of 12 weeks versus 18 weeks of treatment with grazoprevir (MK-5172) and elbasvir (MK-8742) with or without ribavirin for hepatitis C virus genotype 1 infection in previously untreated patients with cirrhosis and patients with previous null response with or without cirrhosis (C-WORTHY): a randomised, open-label phase 2 trial
-
27 Lawitz, E., et al. Efficacy and safety of 12 weeks versus 18 weeks of treatment with grazoprevir (MK-5172) and elbasvir (MK-8742) with or without ribavirin for hepatitis C virus genotype 1 infection in previously untreated patients with cirrhosis and patients with previous null response with or without cirrhosis (C-WORTHY): a randomised, open-label phase 2 trial. Lancet 385 (2015), 1075–1086.
-
(2015)
Lancet
, vol.385
, pp. 1075-1086
-
-
Lawitz, E.1
-
28
-
-
84872040237
-
HIV pathogenesis: dynamics and genetics of viral populations and infected cells
-
28 Coffin, J., Swanstrom, R., HIV pathogenesis: dynamics and genetics of viral populations and infected cells. Cold Spring Harb. Perspect. Med., 3, 2013, a012526.
-
(2013)
Cold Spring Harb. Perspect. Med.
, vol.3
, pp. a012526
-
-
Coffin, J.1
Swanstrom, R.2
-
29
-
-
5444247213
-
Combating susceptibility to drug resistance: Lessons from HIV-1 protease
-
29 King, N.M., et al. Combating susceptibility to drug resistance: Lessons from HIV-1 protease. Chem. Biol. 11 (2004), 1333–1338.
-
(2004)
Chem. Biol.
, vol.11
, pp. 1333-1338
-
-
King, N.M.1
-
30
-
-
0036121219
-
Substrate shape determines specificity of recognition for HIV-1 Protease: analysis of crystal structures of six substrate complexes
-
30 Prabu-Jeyabalan, M., et al. Substrate shape determines specificity of recognition for HIV-1 Protease: analysis of crystal structures of six substrate complexes. Structure 10 (2002), 369–381.
-
(2002)
Structure
, vol.10
, pp. 369-381
-
-
Prabu-Jeyabalan, M.1
-
31
-
-
78650481557
-
Drug resistance against HCV NS3/4A inhibitors is defined by the balance of substrate recognition versus inhibitor binding
-
31 Romano, K.P., et al. Drug resistance against HCV NS3/4A inhibitors is defined by the balance of substrate recognition versus inhibitor binding. Proc. Natl. Acad. Sci. U.S.A. 107 (2010), 20986–20991.
-
(2010)
Proc. Natl. Acad. Sci. U.S.A.
, vol.107
, pp. 20986-20991
-
-
Romano, K.P.1
-
32
-
-
84901989744
-
HIV-1 Protease-substrate coevolution in nelfinavir resistance
-
32 Kolli, M., et al. HIV-1 Protease-substrate coevolution in nelfinavir resistance. J. Virol. 88 (2014), 7145–7154.
-
(2014)
J. Virol.
, vol.88
, pp. 7145-7154
-
-
Kolli, M.1
-
33
-
-
84875798935
-
Structural and thermodynamic basis of amprenavir/darunavir and atazanavir resistance in HIV-1 protease with mutations at residue 50
-
33 Mittal, S., et al. Structural and thermodynamic basis of amprenavir/darunavir and atazanavir resistance in HIV-1 protease with mutations at residue 50. J. Virol. 87 (2013), 4176–4184.
-
(2013)
J. Virol.
, vol.87
, pp. 4176-4184
-
-
Mittal, S.1
-
34
-
-
84914179769
-
Structural analysis of asunaprevir resistance in HCV NS3/4A protease
-
34 Soumana, D.I., et al. Structural analysis of asunaprevir resistance in HCV NS3/4A protease. ACS Chem. Biol. 9 (2014), 2485–2490.
-
(2014)
ACS Chem. Biol.
, vol.9
, pp. 2485-2490
-
-
Soumana, D.I.1
-
35
-
-
84885334074
-
In vitro efficacy of approved and experimental antivirals against novel genotype 3 hepatitis C virus subgenomic replicons
-
35 Yu, M., et al. In vitro efficacy of approved and experimental antivirals against novel genotype 3 hepatitis C virus subgenomic replicons. Antiviral Res. 100 (2013), 439–445.
-
(2013)
Antiviral Res.
, vol.100
, pp. 439-445
-
-
Yu, M.1
-
36
-
-
48449083017
-
HIV-1 drug resistance mutations: an updated framework for the second decade of HAART
-
36 Shafer, R.W., Schapiro, J.M., HIV-1 drug resistance mutations: an updated framework for the second decade of HAART. AIDS Rev. 10 (2008), 67–84.
-
(2008)
AIDS Rev.
, vol.10
, pp. 67-84
-
-
Shafer, R.W.1
Schapiro, J.M.2
-
37
-
-
84887949978
-
Testing the substrate-envelope hypothesis with designed pairs of compounds
-
37 Shen, Y., et al. Testing the substrate-envelope hypothesis with designed pairs of compounds. ACS Chem. Biol. 8 (2013), 2433–2441.
-
(2013)
ACS Chem. Biol.
, vol.8
, pp. 2433-2441
-
-
Shen, Y.1
-
38
-
-
19544386471
-
TMC114, a novel human immunodeficiency virus type 1 protease inhibitor active against protease inhibitor-resistant viruses, including a broad range of clinical isolates
-
38 De Meyer, S., et al. TMC114, a novel human immunodeficiency virus type 1 protease inhibitor active against protease inhibitor-resistant viruses, including a broad range of clinical isolates. Antimicrob. Agents Chemother. 49 (2005), 2314–2321.
-
(2005)
Antimicrob. Agents Chemother.
, vol.49
, pp. 2314-2321
-
-
De Meyer, S.1
-
39
-
-
6344231715
-
Structural and thermodynamic basis for the binding of TMC114, a next-generation human immunodeficiency virus type 1 protease inhibitor
-
39 King, N.M., et al. Structural and thermodynamic basis for the binding of TMC114, a next-generation human immunodeficiency virus type 1 protease inhibitor. J. Virol. 78 (2004), 12012–12021.
-
(2004)
J. Virol.
, vol.78
, pp. 12012-12021
-
-
King, N.M.1
-
40
-
-
20144382495
-
Discovery and selection of TMC114, a next generation HIV-1 protease inhibitor
-
40 Surleraux, D.L., et al. Discovery and selection of TMC114, a next generation HIV-1 protease inhibitor. J. Med. Chem. 48 (2005), 1813–1822.
-
(2005)
J. Med. Chem.
, vol.48
, pp. 1813-1822
-
-
Surleraux, D.L.1
-
41
-
-
55049134097
-
Resilience to resistance of HIV-1 protease inhibitors: profile of darunavir
-
41 Lefebvre, E., Schiffer, C.A., Resilience to resistance of HIV-1 protease inhibitors: profile of darunavir. AIDS Rev. 10 (2008), 131–142.
-
(2008)
AIDS Rev.
, vol.10
, pp. 131-142
-
-
Lefebvre, E.1
Schiffer, C.A.2
-
42
-
-
41449098109
-
Resistance profile of darunavir: combined 24-week results from the POWER trials
-
42 de Meyer, S., et al. Resistance profile of darunavir: combined 24-week results from the POWER trials. AIDS Res. Hum. Retroviruses 24 (2008), 379–388.
-
(2008)
AIDS Res. Hum. Retroviruses
, vol.24
, pp. 379-388
-
-
de Meyer, S.1
-
43
-
-
79956357160
-
Experimental illumination of a fitness landscape
-
43 Hietpas, R.T., et al. Experimental illumination of a fitness landscape. Proc. Natl. Acad. Sci. U.S.A. 108 (2011), 7896–7901.
-
(2011)
Proc. Natl. Acad. Sci. U.S.A.
, vol.108
, pp. 7896-7901
-
-
Hietpas, R.T.1
-
44
-
-
84904255696
-
Systematic exploration of ubiquitin sequence, E1 activation efficiency, and experimental fitness in yeast
-
44 Roscoe, B.P., Bolon, D.N., Systematic exploration of ubiquitin sequence, E1 activation efficiency, and experimental fitness in yeast. J. Mol. Biol. 426 (2014), 2854–2870.
-
(2014)
J. Mol. Biol.
, vol.426
, pp. 2854-2870
-
-
Roscoe, B.P.1
Bolon, D.N.2
-
45
-
-
84863393712
-
Enhancing protein backbone binding – a fruitful concept for combating drug-resistant HIV
-
45 Ghosh, A.K., et al. Enhancing protein backbone binding – a fruitful concept for combating drug-resistant HIV. Angew. Chem. Int. Ed. Engl. 51 (2012), 1778–1802.
-
(2012)
Angew. Chem. Int. Ed. Engl.
, vol.51
, pp. 1778-1802
-
-
Ghosh, A.K.1
-
46
-
-
38949203748
-
Design of HIV protease inhibitors targeting protein backbone: an effective strategy for combating drug resistance
-
46 Ghosh, A.K., et al. Design of HIV protease inhibitors targeting protein backbone: an effective strategy for combating drug resistance. Acc. Chem. Res. 41 (2008), 78–86.
-
(2008)
Acc. Chem. Res.
, vol.41
, pp. 78-86
-
-
Ghosh, A.K.1
-
47
-
-
84880054656
-
HIV-1 reverse transcriptase and antiviral drug resistance. Part 1
-
47 Das, K., Arnold, E., HIV-1 reverse transcriptase and antiviral drug resistance. Part 1. Curr. Opin. Virol. 3 (2013), 111–118.
-
(2013)
Curr. Opin. Virol.
, vol.3
, pp. 111-118
-
-
Das, K.1
Arnold, E.2
-
48
-
-
2342620790
-
Roles of conformational and positional adaptability in structure-based design of TMC125-R165335 (etravirine) and related non-nucleoside reverse transcriptase inhibitors that are highly potent and effective against wild-type and drug-resistant HIV-1 variants
-
48 Das, K., et al. Roles of conformational and positional adaptability in structure-based design of TMC125-R165335 (etravirine) and related non-nucleoside reverse transcriptase inhibitors that are highly potent and effective against wild-type and drug-resistant HIV-1 variants. J. Med. Chem. 47 (2004), 2550–2560.
-
(2004)
J. Med. Chem.
, vol.47
, pp. 2550-2560
-
-
Das, K.1
-
49
-
-
34248336220
-
Unique thermodynamic response of tipranavir to human immunodeficiency virus type 1 protease drug resistance mutations
-
49 Muzammil, S., et al. Unique thermodynamic response of tipranavir to human immunodeficiency virus type 1 protease drug resistance mutations. J. Virol. 81 (2007), 5144–5154.
-
(2007)
J. Virol.
, vol.81
, pp. 5144-5154
-
-
Muzammil, S.1
-
50
-
-
0035876257
-
The binding energetics of first- and second-generation HIV-1 protease inhibitors: implications for drug design
-
50 Velazquez-Campoy, A., et al. The binding energetics of first- and second-generation HIV-1 protease inhibitors: implications for drug design. Arch. Biochem. Biophys. 390 (2001), 169–175.
-
(2001)
Arch. Biochem. Biophys.
, vol.390
, pp. 169-175
-
-
Velazquez-Campoy, A.1
-
51
-
-
77951484077
-
Evaluating the substrate-envelope hypothesis: structural analysis of novel HIV-1 protease inhibitors designed to be robust against drug resistance
-
51 Nalam, M.N., et al. Evaluating the substrate-envelope hypothesis: structural analysis of novel HIV-1 protease inhibitors designed to be robust against drug resistance. J. Virol. 84 (2010), 5368–5378.
-
(2010)
J. Virol.
, vol.84
, pp. 5368-5378
-
-
Nalam, M.N.1
-
52
-
-
84884533764
-
Substrate envelope-designed potent HIV-1 protease inhibitors to avoid drug resistance
-
52 Nalam, M.N., et al. Substrate envelope-designed potent HIV-1 protease inhibitors to avoid drug resistance. Chem. Biol. 20 (2013), 1116–1124.
-
(2013)
Chem. Biol.
, vol.20
, pp. 1116-1124
-
-
Nalam, M.N.1
-
53
-
-
67649628164
-
New approaches to HIV protease inhibitor drug design II: testing the substrate envelope hypothesis to avoid drug resistance and discover robust inhibitors
-
53 Nalam, M.N., Schiffer, C.A., New approaches to HIV protease inhibitor drug design II: testing the substrate envelope hypothesis to avoid drug resistance and discover robust inhibitors. Curr. Opin. HIV AIDS 3 (2008), 642–646.
-
(2008)
Curr. Opin. HIV AIDS
, vol.3
, pp. 642-646
-
-
Nalam, M.N.1
Schiffer, C.A.2
-
54
-
-
84890495645
-
Improving the resistance profile of hepatitis C NS3/4A inhibitors: dynamic substrate envelope guided design
-
54 Ozen, A., et al. Improving the resistance profile of hepatitis C NS3/4A inhibitors: dynamic substrate envelope guided design. J. Chem. Theory Comput. 9 (2013), 5693–5705.
-
(2013)
J. Chem. Theory Comput.
, vol.9
, pp. 5693-5705
-
-
Ozen, A.1
-
55
-
-
84880538921
-
Evaluating the role of macrocycles in the susceptibility of hepatitis C virus NS3/4A protease inhibitors to drug resistance
-
55 Ali, A., et al. Evaluating the role of macrocycles in the susceptibility of hepatitis C virus NS3/4A protease inhibitors to drug resistance. ACS Chem. Biol. 8 (2013), 1469–1478.
-
(2013)
ACS Chem. Biol.
, vol.8
, pp. 1469-1478
-
-
Ali, A.1
-
56
-
-
84859752422
-
Discovery of MK-5172, a macrocyclic hepatitis C virus NS3/4a protease inhibitor
-
56 Harper, S., et al. Discovery of MK-5172, a macrocyclic hepatitis C virus NS3/4a protease inhibitor. ACS Med. Chem. Lett. 3 (2012), 332–336.
-
(2012)
ACS Med. Chem. Lett.
, vol.3
, pp. 332-336
-
-
Harper, S.1
-
57
-
-
55549110737
-
Discovery of novel, potent and bioavailable proline-urea based macrocyclic HCV NS3/4A protease inhibitors
-
57 Vendeville, S., et al. Discovery of novel, potent and bioavailable proline-urea based macrocyclic HCV NS3/4A protease inhibitors. Bioorg. Med. Chem. Lett. 18 (2008), 6189–6193.
-
(2008)
Bioorg. Med. Chem. Lett.
, vol.18
, pp. 6189-6193
-
-
Vendeville, S.1
-
58
-
-
84966283995
-
Structural and thermodynamic effects of macrocyclization. in HCV NS3/4A inhibitor MK-5172
-
Published online December 18, 2015
-
58 Soumana, D., et al. Structural and thermodynamic effects of macrocyclization. in HCV NS3/4A inhibitor MK-5172. ACS Chem. Biol., 2015, 10.1021/acschembio.5b00647 Published online December 18, 2015.
-
(2015)
ACS Chem. Biol.
-
-
Soumana, D.1
-
59
-
-
84857955750
-
A quantitative basis for antiretroviral therapy for HIV-1 infection
-
59 Jilek, B.L., et al. A quantitative basis for antiretroviral therapy for HIV-1 infection. Nat. Med. 18 (2012), 446–451.
-
(2012)
Nat. Med.
, vol.18
, pp. 446-451
-
-
Jilek, B.L.1
-
60
-
-
79956291343
-
Dose–response curve slope is a missing dimension in the analysis of HIV-1 drug resistance
-
60 Sampah, M.E.S., et al. Dose–response curve slope is a missing dimension in the analysis of HIV-1 drug resistance. Proc. Natl. Acad. Sci. U.S.A. 108 (2011), 7613–7618.
-
(2011)
Proc. Natl. Acad. Sci. U.S.A.
, vol.108
, pp. 7613-7618
-
-
Sampah, M.E.S.1
-
62
-
-
84870533547
-
Final 192-week efficacy and safety of once-daily darunavir/ritonavir compared with lopinavir/ritonavir in HIV-1-infected treatment-naive patients in the ARTEMIS trial
-
62 Orkin, C., et al. Final 192-week efficacy and safety of once-daily darunavir/ritonavir compared with lopinavir/ritonavir in HIV-1-infected treatment-naive patients in the ARTEMIS trial. HIV Med. 14 (2013), 49–59.
-
(2013)
HIV Med.
, vol.14
, pp. 49-59
-
-
Orkin, C.1
-
63
-
-
84929905730
-
Genetic barrier to resistance for dolutegravir
-
63 Llibre, J.M., et al. Genetic barrier to resistance for dolutegravir. AIDS Rev. 17 (2015), 56–64.
-
(2015)
AIDS Rev.
, vol.17
, pp. 56-64
-
-
Llibre, J.M.1
-
64
-
-
84947041539
-
Protease inhibitor monotherapy for long-term management of HIV infection: a randomised, controlled, open-label, non-inferiority trial
-
64 Paton, N.I., et al. Protease inhibitor monotherapy for long-term management of HIV infection: a randomised, controlled, open-label, non-inferiority trial. Lancet HIV 2 (2015), e417–e426.
-
(2015)
Lancet HIV
, vol.2
, pp. e417-e426
-
-
Paton, N.I.1
-
65
-
-
77957351212
-
HIV-1 protease mutations and protease inhibitor cross-resistance
-
65 Rhee, S.Y., et al. HIV-1 protease mutations and protease inhibitor cross-resistance. Antimicrob. Agents Chemother. 54 (2010), 4253–4261.
-
(2010)
Antimicrob. Agents Chemother.
, vol.54
, pp. 4253-4261
-
-
Rhee, S.Y.1
-
66
-
-
20244387096
-
Mutation patterns and structural correlates in human immunodeficiency virus type 1 protease following different protease inhibitor treatments
-
66 Wu, T.D., et al. Mutation patterns and structural correlates in human immunodeficiency virus type 1 protease following different protease inhibitor treatments. J. Virol. 77 (2003), 4836–4847.
-
(2003)
J. Virol.
, vol.77
, pp. 4836-4847
-
-
Wu, T.D.1
-
67
-
-
84875159472
-
Cooperative effects of drug-resistance mutations in the flap region of HIV-1 protease
-
67 Foulkes-Murzycki, J.E., et al. Cooperative effects of drug-resistance mutations in the flap region of HIV-1 protease. ACS Chem. Biol. 8 (2013), 513–518.
-
(2013)
ACS Chem. Biol.
, vol.8
, pp. 513-518
-
-
Foulkes-Murzycki, J.E.1
-
68
-
-
0344823654
-
Multidrug resistance to HIV-1 protease inhibition requires cooperative coupling between distal mutations
-
68 Ohtaka, H., et al. Multidrug resistance to HIV-1 protease inhibition requires cooperative coupling between distal mutations. Biochemistry (Mosc) 42 (2003), 13659–13666.
-
(2003)
Biochemistry (Mosc)
, vol.42
, pp. 13659-13666
-
-
Ohtaka, H.1
-
69
-
-
80051749007
-
Accessory mutations maintain stability in drug-resistant HIV-1 protease
-
69 Chang, M.W., Torbett, B.E., Accessory mutations maintain stability in drug-resistant HIV-1 protease. J. Mol. Biol. 410 (2011), 756–760.
-
(2011)
J. Mol. Biol.
, vol.410
, pp. 756-760
-
-
Chang, M.W.1
Torbett, B.E.2
-
70
-
-
0036295508
-
Evolution of an antibiotic resistance enzyme constrained by stability and activity trade-offs
-
70 Wang, X., et al. Evolution of an antibiotic resistance enzyme constrained by stability and activity trade-offs. J. Mol. Biol. 320 (2002), 85–95.
-
(2002)
J. Mol. Biol.
, vol.320
, pp. 85-95
-
-
Wang, X.1
-
71
-
-
37849032050
-
Phenotypic characterization of resistant Val36 variants of hepatitis C virus NS3-4A serine protease
-
71 Zhou, Y., et al. Phenotypic characterization of resistant Val36 variants of hepatitis C virus NS3-4A serine protease. Antimicrob. Agents Chemother. 52 (2008), 110–120.
-
(2008)
Antimicrob. Agents Chemother.
, vol.52
, pp. 110-120
-
-
Zhou, Y.1
-
72
-
-
84906751080
-
Drug resistance conferred by mutations outside the active site through alterations in the dynamic and structural ensemble of HIV-1 protease
-
72 Ragland, D.A., et al. Drug resistance conferred by mutations outside the active site through alterations in the dynamic and structural ensemble of HIV-1 protease. J. Am. Chem. Soc. 136 (2014), 11956–11963.
-
(2014)
J. Am. Chem. Soc.
, vol.136
, pp. 11956-11963
-
-
Ragland, D.A.1
-
73
-
-
0036147844
-
Rapid structural fluctuations of the free HIV protease flaps in solution: relationship to crystal structures and comparison with predictions of dynamics calculations
-
73 Freedberg, D.I., et al. Rapid structural fluctuations of the free HIV protease flaps in solution: relationship to crystal structures and comparison with predictions of dynamics calculations. Protein Sci. 11 (2002), 221–232.
-
(2002)
Protein Sci.
, vol.11
, pp. 221-232
-
-
Freedberg, D.I.1
-
74
-
-
32244437816
-
HIV-1 protease flaps spontaneously open and reclose in molecular dynamics simulations
-
74 Hornak, V., et al. HIV-1 protease flaps spontaneously open and reclose in molecular dynamics simulations. Proc. Natl. Acad. Sci. U.S.A. 103 (2006), 915–920.
-
(2006)
Proc. Natl. Acad. Sci. U.S.A.
, vol.103
, pp. 915-920
-
-
Hornak, V.1
-
75
-
-
0033200247
-
Flap opening and dimer-interface flexibility in the free and inhibitor-bound HIV protease, and their implications for function
-
75 Ishima, R., et al. Flap opening and dimer-interface flexibility in the free and inhibitor-bound HIV protease, and their implications for function. Structure 7 (1999), 1047–1055.
-
(1999)
Structure
, vol.7
, pp. 1047-1055
-
-
Ishima, R.1
-
76
-
-
0034483901
-
Curling of flap tips in HIV-1 protease as a mechanism for substrate entry and tolerance of drug resistance
-
76 Scott, W.R., Schiffer, C.A., Curling of flap tips in HIV-1 protease as a mechanism for substrate entry and tolerance of drug resistance. Structure 8 (2000), 1259–1265.
-
(2000)
Structure
, vol.8
, pp. 1259-1265
-
-
Scott, W.R.1
Schiffer, C.A.2
-
77
-
-
33846798356
-
Hydrophobic sliding: a possible mechanism for drug resistance in human immunodeficiency virus type 1 protease
-
77 Foulkes-Murzycki, J.E., et al. Hydrophobic sliding: a possible mechanism for drug resistance in human immunodeficiency virus type 1 protease. Structure 15 (2007), 225–233.
-
(2007)
Structure
, vol.15
, pp. 225-233
-
-
Foulkes-Murzycki, J.E.1
-
78
-
-
84857804736
-
Hydrophobic core flexibility modulates enzyme activity in HIV-1 protease
-
78 Mittal, S., et al. Hydrophobic core flexibility modulates enzyme activity in HIV-1 protease. J. Am. Chem. Soc. 134 (2012), 4163–4168.
-
(2012)
J. Am. Chem. Soc.
, vol.134
, pp. 4163-4168
-
-
Mittal, S.1
-
79
-
-
84867374992
-
Differential flap dynamics in wild-type and a drug resistant variant of HIV-1 protease revealed by molecular dynamics and NMR relaxation
-
79 Cai, Y., et al. Differential flap dynamics in wild-type and a drug resistant variant of HIV-1 protease revealed by molecular dynamics and NMR relaxation. J. Chem. Theory Comput. 8 (2012), 3452–3462.
-
(2012)
J. Chem. Theory Comput.
, vol.8
, pp. 3452-3462
-
-
Cai, Y.1
-
80
-
-
84906274179
-
Drug resistance mutations alter dynamics of inhibitor-bound HIV-1 protease
-
80 Cai, Y., et al. Drug resistance mutations alter dynamics of inhibitor-bound HIV-1 protease. J. Chem. Theory Comput. 10 (2014), 3438–3448.
-
(2014)
J. Chem. Theory Comput.
, vol.10
, pp. 3438-3448
-
-
Cai, Y.1
-
81
-
-
84877768643
-
Elucidating a relationship between conformational sampling and drug resistance in HIV-1 protease
-
81 de Vera, I.M.S., et al. Elucidating a relationship between conformational sampling and drug resistance in HIV-1 protease. Biochemistry (Mosc) 52 (2013), 3278–3288.
-
(2013)
Biochemistry (Mosc)
, vol.52
, pp. 3278-3288
-
-
de Vera, I.M.S.1
-
82
-
-
84922309508
-
Defective hydrophobic sliding mechanism and active site expansion in HIV-1 protease drug resistant variant Gly48Thr/Leu89Met: mechanisms for the loss of saquinavir binding potency
-
82 Goldfarb, N.E., et al. Defective hydrophobic sliding mechanism and active site expansion in HIV-1 protease drug resistant variant Gly48Thr/Leu89Met: mechanisms for the loss of saquinavir binding potency. Biochemistry (Mosc) 54 (2015), 422–433.
-
(2015)
Biochemistry (Mosc)
, vol.54
, pp. 422-433
-
-
Goldfarb, N.E.1
-
83
-
-
84864505786
-
Human immunodeficiency virus Gag and protease: partners in resistance
-
83 Fun, A., et al. Human immunodeficiency virus Gag and protease: partners in resistance. Retrovirology, 9, 2012, 63.
-
(2012)
Retrovirology
, vol.9
, pp. 63
-
-
Fun, A.1
-
84
-
-
33646043172
-
Co-evolution of nelfinavir-resistant HIV-1 protease and the p1-p6 substrate
-
84 Kolli, M., et al. Co-evolution of nelfinavir-resistant HIV-1 protease and the p1-p6 substrate. Virology 347 (2006), 405–409.
-
(2006)
Virology
, vol.347
, pp. 405-409
-
-
Kolli, M.1
-
85
-
-
70350317566
-
Human immunodeficiency virus type 1 protease-correlated cleavage site mutations enhance inhibitor resistance
-
85 Kolli, M., et al. Human immunodeficiency virus type 1 protease-correlated cleavage site mutations enhance inhibitor resistance. J. Virol. 83 (2009), 11027–11042.
-
(2009)
J. Virol.
, vol.83
, pp. 11027-11042
-
-
Kolli, M.1
-
86
-
-
84909620045
-
Structural basis and distal effects of Gag substrate coevolution in drug resistance to HIV-1 protease
-
86 Ozen, A., et al. Structural basis and distal effects of Gag substrate coevolution in drug resistance to HIV-1 protease. Proc. Natl. Acad. Sci. U.S.A. 111 (2014), 15993–15998.
-
(2014)
Proc. Natl. Acad. Sci. U.S.A.
, vol.111
, pp. 15993-15998
-
-
Ozen, A.1
-
87
-
-
7644230388
-
Structural basis for coevolution of a human immunodeficiency virus type 1 nucleocapsid-p1 cleavage site with a V82A drug-resistant mutation in viral protease
-
87 Prabu-Jeyabalan, M., et al. Structural basis for coevolution of a human immunodeficiency virus type 1 nucleocapsid-p1 cleavage site with a V82A drug-resistant mutation in viral protease. J. Virol. 78 (2004), 12446–12454.
-
(2004)
J. Virol.
, vol.78
, pp. 12446-12454
-
-
Prabu-Jeyabalan, M.1
-
88
-
-
63449110982
-
Gag mutations strongly contribute to HIV-1 resistance to protease inhibitors in highly drug-experienced patients besides compensating for fitness loss
-
88 Dam, E., et al. Gag mutations strongly contribute to HIV-1 resistance to protease inhibitors in highly drug-experienced patients besides compensating for fitness loss. PLoS Path., 5, 2009, e1000345.
-
(2009)
PLoS Path.
, vol.5
, pp. e1000345
-
-
Dam, E.1
-
89
-
-
0036310578
-
Changes in human immunodeficiency virus type 1 Gag at positions L449 and P453 are linked to 150 V protease mutants in vivo and cause reduction of sensitivity to amprenavir and improved viral fitness in vitro
-
89 Maguire, M.F., et al. Changes in human immunodeficiency virus type 1 Gag at positions L449 and P453 are linked to 150 V protease mutants in vivo and cause reduction of sensitivity to amprenavir and improved viral fitness in vitro. J. Virol. 76 (2002), 7398–7406.
-
(2002)
J. Virol.
, vol.76
, pp. 7398-7406
-
-
Maguire, M.F.1
-
90
-
-
33846702679
-
A novel substrate-based HIV-1 protease inhibitor drug resistance mechanism
-
90 Nijhuis, M., et al. A novel substrate-based HIV-1 protease inhibitor drug resistance mechanism. PLoS Med., 4, 2007, e36.
-
(2007)
PLoS Med.
, vol.4
, pp. e36
-
-
Nijhuis, M.1
|