메뉴 건너뛰기




Volumn 6, Issue 4, 2015, Pages 241-253

Three-dimensional regulation of transcription

Author keywords

epigenetic changes; long non coding RNAs; three dimensional chromosome interactions; transcriptional regulation

Indexed keywords

CHROMATIN; HISTONE; UNTRANSLATED RNA;

EID: 84939988246     PISSN: 1674800X     EISSN: 16748018     Source Type: Journal    
DOI: 10.1007/s13238-015-0135-7     Document Type: Article
Times cited : (22)

References (112)
  • 2
    • 0035910395 scopus 로고    scopus 로고
    • Insulators and boundaries: versatile regulatory elements in the eukaryotic genome
    • COI: 1:CAS:528:DC%2BD3MXlslehsA%3D%3D, PID: 11228144
    • Bell AC, West AG, Felsenfeld G (2001) Insulators and boundaries: versatile regulatory elements in the eukaryotic genome. Science 291:447–450
    • (2001) Science , vol.291 , pp. 447-450
    • Bell, A.C.1    West, A.G.2    Felsenfeld, G.3
  • 3
    • 34249299791 scopus 로고    scopus 로고
    • The complex language of chromatin regulation during transcription
    • COI: 1:CAS:528:DC%2BD2sXlsFOgsrc%3D, PID: 17522673
    • Berger SL (2007) The complex language of chromatin regulation during transcription. Nature 447:407–412
    • (2007) Nature , vol.447 , pp. 407-412
    • Berger, S.L.1
  • 4
    • 0025012640 scopus 로고
    • The product of the H19 gene may function as an RNA
    • COI: 1:CAS:528:DyaK3cXkvFyrsA%3D%3D, PID: 1688465
    • Brannan CI, Dees EC, Ingram RS, Tilghman SM (1990) The product of the H19 gene may function as an RNA. Mol Cell Biol 10:28–36
    • (1990) Mol Cell Biol , vol.10 , pp. 28-36
    • Brannan, C.I.1    Dees, E.C.2    Ingram, R.S.3    Tilghman, S.M.4
  • 5
    • 53149107845 scopus 로고    scopus 로고
    • Chromatin insulators: regulatory mechanisms and epigenetic inheritance
    • COI: 1:CAS:528:DC%2BD1cXht1GksL%2FL, PID: 18851828
    • Bushey AM, Dorman ER, Corces VG (2008) Chromatin insulators: regulatory mechanisms and epigenetic inheritance. Mol Cell 32:1–9
    • (2008) Mol Cell , vol.32 , pp. 1-9
    • Bushey, A.M.1    Dorman, E.R.2    Corces, V.G.3
  • 6
    • 80052978224 scopus 로고    scopus 로고
    • Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses
    • COI: 1:CAS:528:DC%2BC3MXht1Oju7zI, PID: 21890647
    • Cabili MN, Trapnell C, Goff L, Koziol M, Tazon-Vega B, Regev A, Rinn JL (2011) Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses. Genes Dev 25:1915–1927
    • (2011) Genes Dev , vol.25 , pp. 1915-1927
    • Cabili, M.N.1    Trapnell, C.2    Goff, L.3    Koziol, M.4    Tazon-Vega, B.5    Regev, A.6    Rinn, J.L.7
  • 7
    • 70249121045 scopus 로고    scopus 로고
    • The logic of chromatin architecture and remodelling at promoters
    • COI: 1:CAS:528:DC%2BD1MXhtFSnt7nO, PID: 19741699
    • Cairns BR (2009) The logic of chromatin architecture and remodelling at promoters. Nature 461:193–198
    • (2009) Nature , vol.461 , pp. 193-198
    • Cairns, B.R.1
  • 10
    • 84875200698 scopus 로고    scopus 로고
    • Functional implications of genome topology
    • COI: 1:CAS:528:DC%2BC3sXjsFOrsro%3D, PID: 23463314
    • Cavalli G, Misteli T (2013) Functional implications of genome topology. Nat Struct Mol Biol 20:290–299
    • (2013) Nat Struct Mol Biol , vol.20 , pp. 290-299
    • Cavalli, G.1    Misteli, T.2
  • 11
    • 77957153139 scopus 로고    scopus 로고
    • Small RNAs are on the move
    • COI: 1:CAS:528:DC%2BC3cXhtFyqtLvI, PID: 20864994
    • Chitwood DH, Timmermans MC (2010) Small RNAs are on the move. Nature 467:415–419
    • (2010) Nature , vol.467 , pp. 415-419
    • Chitwood, D.H.1    Timmermans, M.C.2
  • 12
    • 84870317191 scopus 로고    scopus 로고
    • 3C-based technologies to study the shape of the genome
    • PID: 23199640
    • de Laat W, Dekker J (2012) 3C-based technologies to study the shape of the genome. Methods 58:189–191
    • (2012) Methods , vol.58 , pp. 189-191
    • de Laat, W.1    Dekker, J.2
  • 13
    • 84886853624 scopus 로고    scopus 로고
    • Topology of mammalian developmental enhancers and their regulatory landscapes
    • PID: 24153303
    • de Laat W, Duboule D (2013) Topology of mammalian developmental enhancers and their regulatory landscapes. Nature 502:499–506
    • (2013) Nature , vol.502 , pp. 499-506
    • de Laat, W.1    Duboule, D.2
  • 15
    • 79954510417 scopus 로고    scopus 로고
    • In the loop: long range chromatin interactions and gene regulation
    • COI: 1:CAS:528:DC%2BC3MXitleiu7o%3D, PID: 21258045
    • Dean A (2011) In the loop: long range chromatin interactions and gene regulation. Brief Funct Genomics 10:3–10
    • (2011) Brief Funct Genomics , vol.10 , pp. 3-10
    • Dean, A.1
  • 16
    • 0037083376 scopus 로고    scopus 로고
    • Capturing chromosome conformation
    • COI: 1:CAS:528:DC%2BD38XhsVGhsbk%3D, PID: 11847345
    • Dekker J, Rippe K, Dekker M, Kleckner N (2002) Capturing chromosome conformation. Science 295:1306–1311
    • (2002) Science , vol.295 , pp. 1306-1311
    • Dekker, J.1    Rippe, K.2    Dekker, M.3    Kleckner, N.4
  • 18
    • 84922232458 scopus 로고    scopus 로고
    • Long non-coding RNAs as emerging regulators of differentiation, development, and disease
    • PID: 25483404
    • Dey BK, Mueller AC, Dutta A (2014) Long non-coding RNAs as emerging regulators of differentiation, development, and disease. Transcription 5:e944014
    • (2014) Transcription , vol.5 , pp. 944014
    • Dey, B.K.1    Mueller, A.C.2    Dutta, A.3
  • 19
    • 33749400168 scopus 로고    scopus 로고
    • Chromosome conformation capture carbon copy (5C): a massively parallel solution for mapping interactions between genomic elements
    • COI: 1:CAS:528:DC%2BD28XhtVOmtrbK, PID: 16954542
    • Dostie J, Richmond TA, Arnaout RA, Selzer RR, Lee WL, Honan TA, Rubio ED, Krumm A, Lamb J, Nusbaum C et al (2006) Chromosome conformation capture carbon copy (5C): a massively parallel solution for mapping interactions between genomic elements. Genome Res 16:1299–1309
    • (2006) Genome Res , vol.16 , pp. 1299-1309
    • Dostie, J.1    Richmond, T.A.2    Arnaout, R.A.3    Selzer, R.R.4    Lee, W.L.5    Honan, T.A.6    Rubio, E.D.7    Krumm, A.8    Lamb, J.9    Nusbaum, C.10
  • 20
    • 0030768779 scopus 로고    scopus 로고
    • Regulation of transcription by proteins that control the cell cycle
    • COI: 1:CAS:528:DyaK2sXmtVSktb4%3D, PID: 9296491
    • Dynlacht BD (1997) Regulation of transcription by proteins that control the cell cycle. Nature 389:149–152
    • (1997) Nature , vol.389 , pp. 149-152
    • Dynlacht, B.D.1
  • 21
    • 0029847278 scopus 로고    scopus 로고
    • Chromatin and transcription
    • COI: 1:CAS:528:DyaK28Xlt1KlsLY%3D, PID: 8751719
    • Edmondson DG, Roth SY (1996) Chromatin and transcription. FASEB J 10:1173–1182
    • (1996) FASEB J , vol.10 , pp. 1173-1182
    • Edmondson, D.G.1    Roth, S.Y.2
  • 22
    • 84886777912 scopus 로고    scopus 로고
    • Chromosomal contact permits transcription between coregulated genes
    • COI: 1:CAS:528:DC%2BC3sXhs1yqsbzO, PID: 24243018
    • Fanucchi S, Shibayama Y, Burd S, Weinberg MS, Mhlanga MM (2013) Chromosomal contact permits transcription between coregulated genes. Cell 155:606–620
    • (2013) Cell , vol.155 , pp. 606-620
    • Fanucchi, S.1    Shibayama, Y.2    Burd, S.3    Weinberg, M.S.4    Mhlanga, M.M.5
  • 23
    • 84890559595 scopus 로고    scopus 로고
    • Long non-coding RNAs: new players in cell differentiation and development
    • COI: 1:CAS:528:DC%2BC3sXhvVKgtrzO, PID: 24296535
    • Fatica A, Bozzoni I (2014) Long non-coding RNAs: new players in cell differentiation and development. Nat Rev Genet 15:7–21
    • (2014) Nat Rev Genet , vol.15 , pp. 7-21
    • Fatica, A.1    Bozzoni, I.2
  • 24
    • 84890840167 scopus 로고    scopus 로고
    • Long noncoding RNAs in innate and adaptive immunity
    • COI: 1:CAS:528:DC%2BC2cXislKlt7k%3D, PID: 24556411
    • Fitzgerald KA, Caffrey DR (2014) Long noncoding RNAs in innate and adaptive immunity. Curr Opin Immunol 26:140–146
    • (2014) Curr Opin Immunol , vol.26 , pp. 140-146
    • Fitzgerald, K.A.1    Caffrey, D.R.2
  • 25
    • 35648954086 scopus 로고    scopus 로고
    • The third dimension of gene regulation: organization of dynamic chromatin loopscape by SATB1
    • COI: 1:CAS:528:DC%2BD2sXht1Kku73M, PID: 17913490
    • Galande S, Purbey PK, Notani D, Kumar PP (2007) The third dimension of gene regulation: organization of dynamic chromatin loopscape by SATB1. Curr Opin Genet Dev 17:408–414
    • (2007) Curr Opin Genet Dev , vol.17 , pp. 408-414
    • Galande, S.1    Purbey, P.K.2    Notani, D.3    Kumar, P.P.4
  • 26
    • 84876838711 scopus 로고    scopus 로고
    • The hierarchy of the 3D genome
    • COI: 1:CAS:528:DC%2BC3sXktVOqsLc%3D, PID: 23473598
    • Gibcus JH, Dekker J (2013) The hierarchy of the 3D genome. Mol Cell 49:773–782
    • (2013) Mol Cell , vol.49 , pp. 773-782
    • Gibcus, J.H.1    Dekker, J.2
  • 27
    • 84921443442 scopus 로고    scopus 로고
    • Architectural proteins: regulators of 3D genome organization in cell fate
    • COI: 1:CAS:528:DC%2BC2cXhsVymsLfE, PID: 25218583
    • Gomez-Diaz E, Corces VG (2014) Architectural proteins: regulators of 3D genome organization in cell fate. Trends Cell Biol 24:703–711
    • (2014) Trends Cell Biol , vol.24 , pp. 703-711
    • Gomez-Diaz, E.1    Corces, V.G.2
  • 28
    • 70249136846 scopus 로고    scopus 로고
    • Chromosome crosstalk in three dimensions
    • PID: 19741702
    • Gondor A, Ohlsson R (2009) Chromosome crosstalk in three dimensions. Nature 461:212–217
    • (2009) Nature , vol.461 , pp. 212-217
    • Gondor, A.1    Ohlsson, R.2
  • 31
    • 84857066786 scopus 로고    scopus 로고
    • Modular regulatory principles of large non-coding RNAs
    • COI: 1:CAS:528:DC%2BC38Xit12gsbw%3D, PID: 22337053
    • Guttman M, Rinn JL (2012) Modular regulatory principles of large non-coding RNAs. Nature 482:339–346
    • (2012) Nature , vol.482 , pp. 339-346
    • Guttman, M.1    Rinn, J.L.2
  • 32
  • 34
    • 70349185347 scopus 로고    scopus 로고
    • Transcription dynamics
    • COI: 1:CAS:528:DC%2BD1MXhsVChsr%2FJ, PID: 19782025
    • Hager GL, McNally JG, Misteli T (2009) Transcription dynamics. Mol Cell 35:741–753
    • (2009) Mol Cell , vol.35 , pp. 741-753
    • Hager, G.L.1    McNally, J.G.2    Misteli, T.3
  • 37
    • 78650966670 scopus 로고    scopus 로고
    • Vernalization-mediated epigenetic silencing by a long intronic noncoding RNA
    • COI: 1:CAS:528:DC%2BC3MXpslej, PID: 21127216
    • Heo JB, Sung S (2011) Vernalization-mediated epigenetic silencing by a long intronic noncoding RNA. Science 331:76–79
    • (2011) Science , vol.331 , pp. 76-79
    • Heo, J.B.1    Sung, S.2
  • 38
    • 84857251182 scopus 로고    scopus 로고
    • CTCF: insights into insulator function during development
    • COI: 1:CAS:528:DC%2BC38XmslOhur4%3D, PID: 22354838
    • Herold M, Bartkuhn M, Renkawitz R (2012) CTCF: insights into insulator function during development. Development 139:1045–1057
    • (2012) Development , vol.139 , pp. 1045-1057
    • Herold, M.1    Bartkuhn, M.2    Renkawitz, R.3
  • 44
    • 0842324785 scopus 로고    scopus 로고
    • The nucleosome: from genomic organization to genomic regulation
    • COI: 1:CAS:528:DC%2BD2cXhtVals7w%3D, PID: 14744436
    • Khorasanizadeh S (2004) The nucleosome: from genomic organization to genomic regulation. Cell 116:259–272
    • (2004) Cell , vol.116 , pp. 259-272
    • Khorasanizadeh, S.1
  • 45
    • 84880864749 scopus 로고    scopus 로고
    • Histone modifications for human epigenome analysis
    • COI: 1:CAS:528:DC%2BC3sXhtFyhu7vM, PID: 23739122
    • Kimura H (2013) Histone modifications for human epigenome analysis. J Hum Genet 58:439–445
    • (2013) J Hum Genet , vol.58 , pp. 439-445
    • Kimura, H.1
  • 46
    • 77951638287 scopus 로고    scopus 로고
    • Noncoding RNA gas5 is a growth arrest- and starvation-associated repressor of the glucocorticoid receptor
    • Kino T, Hurt DE, Ichijo T, Nader N, Chrousos GP (2010) Noncoding RNA gas5 is a growth arrest- and starvation-associated repressor of the glucocorticoid receptor. Sci Signal 3: ra8
    • (2010) Sci Signal 3: ra8
    • Kino, T.1    Hurt, D.E.2    Ichijo, T.3    Nader, N.4    Chrousos, G.P.5
  • 47
    • 84878451215 scopus 로고    scopus 로고
    • Gene regulation by the act of long non-coding RNA transcription
    • PID: 23721193
    • Kornienko AE, Guenzl PM, Barlow DP, Pauler FM (2013) Gene regulation by the act of long non-coding RNA transcription. BMC Biol 11:59
    • (2013) BMC Biol , vol.11 , pp. 59
    • Kornienko, A.E.1    Guenzl, P.M.2    Barlow, D.P.3    Pauler, F.M.4
  • 49
    • 84874368349 scopus 로고    scopus 로고
    • Activating RNAs associate with Mediator to enhance chromatin architecture and transcription
    • COI: 1:CAS:528:DC%2BC3sXjtFWjur8%3D, PID: 23417068
    • Lai F, Orom UA, Cesaroni M, Beringer M, Taatjes DJ, Blobel GA, Shiekhattar R (2013) Activating RNAs associate with Mediator to enhance chromatin architecture and transcription. Nature 494:497–501
    • (2013) Nature , vol.494 , pp. 497-501
    • Lai, F.1    Orom, U.A.2    Cesaroni, M.3    Beringer, M.4    Taatjes, D.J.5    Blobel, G.A.6    Shiekhattar, R.7
  • 50
    • 84897446230 scopus 로고    scopus 로고
    • Enhancer RNAs and regulated transcriptional programs
    • COI: 1:CAS:528:DC%2BC2cXkvV2rurw%3D, PID: 24674738
    • Lam MTY, Li W, Rosenfeld MG, Glass CK (2014) Enhancer RNAs and regulated transcriptional programs. Trends Biochem Sci 39:170–182
    • (2014) Trends Biochem Sci , vol.39 , pp. 170-182
    • Lam, M.T.Y.1    Li, W.2    Rosenfeld, M.G.3    Glass, C.K.4
  • 51
    • 84871069553 scopus 로고    scopus 로고
    • Epigenetic regulation by long noncoding RNAs
    • COI: 1:CAS:528:DC%2BC38XhvVSktb%2FE, PID: 23239728
    • Lee JT (2012) Epigenetic regulation by long noncoding RNAs. Science 338:1435–1439
    • (2012) Science , vol.338 , pp. 1435-1439
    • Lee, J.T.1
  • 52
    • 84875177348 scopus 로고    scopus 로고
    • X-inactivation, imprinting, and long noncoding RNAs in health and disease
    • COI: 1:CAS:528:DC%2BC3sXktFakt70%3D, PID: 23498939
    • Lee JT, Bartolomei MS (2013) X-inactivation, imprinting, and long noncoding RNAs in health and disease. Cell 152:1308–1323
    • (2013) Cell , vol.152 , pp. 1308-1323
    • Lee, J.T.1    Bartolomei, M.S.2
  • 53
    • 0037819447 scopus 로고    scopus 로고
    • Transcription regulation and animal diversity
    • COI: 1:CAS:528:DC%2BD3sXlt1CktLw%3D, PID: 12853946
    • Levine M, Tjian R (2003) Transcription regulation and animal diversity. Nature 424:147–151
    • (2003) Nature , vol.424 , pp. 147-151
    • Levine, M.1    Tjian, R.2
  • 54
    • 84884191636 scopus 로고    scopus 로고
    • Long non-coding RNAs and complex human diseases
    • COI: 1:CAS:528:DC%2BC2cXhsFKmur8%3D, PID: 24036441
    • Li J, Xuan Z, Liu C (2013a) Long non-coding RNAs and complex human diseases. Int J Mol Sci 14:18790–18808
    • (2013) Int J Mol Sci , vol.14 , pp. 18790-18808
    • Li, J.1    Xuan, Z.2    Liu, C.3
  • 55
    • 84879695128 scopus 로고    scopus 로고
    • Functional roles of enhancer RNAs for oestrogen-dependent transcriptional activation
    • COI: 1:CAS:528:DC%2BC3sXosFahtro%3D, PID: 23728302
    • Li W, Notani D, Ma Q, Tanasa B, Nunez E, Chen AY, Merkurjev D, Zhang J, Ohgi K, Song X et al (2013b) Functional roles of enhancer RNAs for oestrogen-dependent transcriptional activation. Nature 498:516–520
    • (2013) Nature , vol.498 , pp. 516-520
    • Li, W.1    Notani, D.2    Ma, Q.3    Tanasa, B.4    Nunez, E.5    Chen, A.Y.6    Merkurjev, D.7    Zhang, J.8    Ohgi, K.9    Song, X.10
  • 57
    • 84932158466 scopus 로고    scopus 로고
    • Aberrant transcriptional regulation could explain phenotypic variability in autosomal recessive polycystic kidney disease
    • COI: 1:CAS:528:DC%2BC2cXhtlanu77J
    • Luft FC (2014) Aberrant transcriptional regulation could explain phenotypic variability in autosomal recessive polycystic kidney disease. J Mol Med (Berl) 92:1011–1014
    • (2014) J Mol Med (Berl) , vol.92 , pp. 1011-1014
    • Luft, F.C.1
  • 58
    • 84880421665 scopus 로고    scopus 로고
    • ATP-dependent roX RNA remodeling by the helicase maleless enables specific association of MSL proteins
    • COI: 1:CAS:528:DC%2BC3sXhtFCgsbvJ, PID: 23870143
    • Maenner S, Muller M, Frohlich J, Langer D, Becker PB (2013) ATP-dependent roX RNA remodeling by the helicase maleless enables specific association of MSL proteins. Mol Cell 51:174–184
    • (2013) Mol Cell , vol.51 , pp. 174-184
    • Maenner, S.1    Muller, M.2    Frohlich, J.3    Langer, D.4    Becker, P.B.5
  • 59
    • 84863861287 scopus 로고    scopus 로고
    • Regulation of chromatin structure by long noncoding RNAs: focus on natural antisense transcripts
    • COI: 1:CAS:528:DC%2BC38XmtFGgsLw%3D, PID: 22541732
    • Magistri M, Faghihi MA, St Laurent G III, Wahlestedt C (2012) Regulation of chromatin structure by long noncoding RNAs: focus on natural antisense transcripts. Trends Genet 28:389–396
    • (2012) Trends Genet , vol.28 , pp. 389-396
    • Magistri, M.1    Faghihi, M.A.2    St Laurent, G.3    Wahlestedt, C.4
  • 60
    • 84888232130 scopus 로고    scopus 로고
    • Chromatin signatures at transcriptional start sites separate two equally populated yet distinct classes of intergenic long noncoding RNAs
    • PID: 24289259
    • Marques AC, Hughes J, Graham B, Kowalczyk MS, Higgs DR, Ponting CP (2013) Chromatin signatures at transcriptional start sites separate two equally populated yet distinct classes of intergenic long noncoding RNAs. Genome Biol 14:R131
    • (2013) Genome Biol , vol.14 , pp. 131
    • Marques, A.C.1    Hughes, J.2    Graham, B.3    Kowalczyk, M.S.4    Higgs, D.R.5    Ponting, C.P.6
  • 61
    • 79957537160 scopus 로고    scopus 로고
    • The central role of RNA in human development and cognition
    • COI: 1:CAS:528:DC%2BC3MXmvFaitrw%3D, PID: 21557942
    • Mattick JS (2011) The central role of RNA in human development and cognition. FEBS Lett 585:1600–1616
    • (2011) FEBS Lett , vol.585 , pp. 1600-1616
    • Mattick, J.S.1
  • 62
    • 33645820442 scopus 로고    scopus 로고
    • Transcription in four dimensions: nuclear receptor-directed initiation of gene expression
    • COI: 1:CAS:528:DC%2BD28XptFOrsg%3D%3D, PID: 16452926
    • Metivier R, Reid G, Gannon F (2006) Transcription in four dimensions: nuclear receptor-directed initiation of gene expression. EMBO Rep 7:161–167
    • (2006) EMBO Rep , vol.7 , pp. 161-167
    • Metivier, R.1    Reid, G.2    Gannon, F.3
  • 63
    • 80053963323 scopus 로고    scopus 로고
    • CTCF, cohesin, and histone variants: connecting the genome
    • COI: 1:CAS:528:DC%2BC3MXht12ksL7L, PID: 21970734
    • Millau JF, Gaudreau L (2011) CTCF, cohesin, and histone variants: connecting the genome. Biochem Cell Biol 89:505–513
    • (2011) Biochem Cell Biol , vol.89 , pp. 505-513
    • Millau, J.F.1    Gaudreau, L.2
  • 64
    • 33847077659 scopus 로고    scopus 로고
    • Beyond the sequence: cellular organization of genome function
    • COI: 1:CAS:528:DC%2BD2sXis12isrs%3D, PID: 17320514
    • Misteli T (2007) Beyond the sequence: cellular organization of genome function. Cell 128:787–800
    • (2007) Cell , vol.128 , pp. 787-800
    • Misteli, T.1
  • 65
    • 56549111129 scopus 로고    scopus 로고
    • The air noncoding RNA epigenetically silences transcription by targeting G9a to chromatin
    • COI: 1:CAS:528:DC%2BD1cXhsVOgtbvE, PID: 18988810
    • Nagano T, Mitchell JA, Sanz LA, Pauler FM, Ferguson-Smith AC, Feil R, Fraser P (2008) The air noncoding RNA epigenetically silences transcription by targeting G9a to chromatin. Science 322:1717–1720
    • (2008) Science , vol.322 , pp. 1717-1720
    • Nagano, T.1    Mitchell, J.A.2    Sanz, L.A.3    Pauler, F.M.4    Ferguson-Smith, A.C.5    Feil, R.6    Fraser, P.7
  • 68
    • 80052413587 scopus 로고    scopus 로고
    • Connecting transcriptional control to chromosome structure and human disease
    • COI: 1:CAS:528:DC%2BC38XnsVOjt7k%3D, PID: 21209391
    • Newman JJ, Young RA (2010) Connecting transcriptional control to chromosome structure and human disease. Cold Spring Harb Symp Quant Biol 75:227–235
    • (2010) Cold Spring Harb Symp Quant Biol , vol.75 , pp. 227-235
    • Newman, J.J.1    Young, R.A.2
  • 69
    • 78650410133 scopus 로고    scopus 로고
    • Insights of the decade. Stepping away from the trees for a look at the forest. Introduction
    • News S (2010) Insights of the decade. Stepping away from the trees for a look at the forest. Introduction. Science 330:1612–1613
    • (2010) Science , vol.330 , pp. 1612-1613
    • News, S.1
  • 73
    • 78650372210 scopus 로고    scopus 로고
    • Shining a light on the genome’s ‘dark matter’
    • COI: 1:CAS:528:DC%2BC3cXhs1elt7rO, PID: 21163986
    • Pennisi E (2010) Shining a light on the genome’s ‘dark matter’. Science 330:1614
    • (2010) Science , vol.330 , pp. 1614
    • Pennisi, E.1
  • 74
    • 67549119096 scopus 로고    scopus 로고
    • CTCF: master weaver of the genome
    • PID: 19563753
    • Phillips JE, Corces VG (2009) CTCF: master weaver of the genome. Cell 137:1194–1211
    • (2009) Cell , vol.137 , pp. 1194-1211
    • Phillips, J.E.1    Corces, V.G.2
  • 75
    • 0030960672 scopus 로고    scopus 로고
    • Transcriptional activation by recruitment
    • COI: 1:CAS:528:DyaK2sXisFChsL8%3D, PID: 9121580
    • Ptashne M, Gann A (1997) Transcriptional activation by recruitment. Nature 386:569–577
    • (1997) Nature , vol.386 , pp. 569-577
    • Ptashne, M.1    Gann, A.2
  • 76
    • 84923638273 scopus 로고    scopus 로고
    • Long noncoding RNAs: an emerging link between gene regulation and nuclear organization
    • COI: 1:CAS:528:DC%2BC2cXhs1WitbnN, PID: 25441720
    • Quinodoz S, Guttman M (2014) Long noncoding RNAs: an emerging link between gene regulation and nuclear organization. Trends Cell Biol 24:651–663
    • (2014) Trends Cell Biol , vol.24 , pp. 651-663
    • Quinodoz, S.1    Guttman, M.2
  • 77
    • 33845320736 scopus 로고    scopus 로고
    • Epigenetic boundaries of tumour suppressor gene promoters: the CTCF connection and its role in carcinogenesis
    • COI: 1:CAS:528:DC%2BD2sXlvFClsLw%3D, PID: 16989720
    • Recillas-Targa F, De La Rosa-Velazquez IA, Soto-Reyes E, Benitez-Bribiesca L (2006) Epigenetic boundaries of tumour suppressor gene promoters: the CTCF connection and its role in carcinogenesis. J Cell Mol Med 10:554–568
    • (2006) J Cell Mol Med , vol.10 , pp. 554-568
    • Recillas-Targa, F.1    De La Rosa-Velazquez, I.A.2    Soto-Reyes, E.3    Benitez-Bribiesca, L.4
  • 78
    • 34249279527 scopus 로고    scopus 로고
    • Stability and flexibility of epigenetic gene regulation in mammalian development
    • COI: 1:CAS:528:DC%2BD2sXlsFOgs7w%3D, PID: 17522676
    • Reik W (2007) Stability and flexibility of epigenetic gene regulation in mammalian development. Nature 447:425–432
    • (2007) Nature , vol.447 , pp. 425-432
    • Reik, W.1
  • 79
    • 79952114792 scopus 로고    scopus 로고
    • Regulatory regions in DNA: promoters, enhancers, silencers, and insulators
    • COI: 1:CAS:528:DC%2BC3cXhtlSnsLrN, PID: 20827584
    • Riethoven JJ (2010) Regulatory regions in DNA: promoters, enhancers, silencers, and insulators. Methods Mol Biol 674:33–42
    • (2010) Methods Mol Biol , vol.674 , pp. 33-42
    • Riethoven, J.J.1
  • 80
    • 84907222725 scopus 로고    scopus 로고
    • RNA function. RNA and dynamic nuclear organization
    • COI: 1:CAS:528:DC%2BC2cXhs1Wqu7jI, PID: 25214588
    • Rinn J, Guttman M (2014) RNA function. RNA and dynamic nuclear organization. Science 345:1240–1241
    • (2014) Science , vol.345 , pp. 1240-1241
    • Rinn, J.1    Guttman, M.2
  • 82
    • 84868705910 scopus 로고    scopus 로고
    • Long noncoding RNAs in cardiac development and pathophysiology
    • COI: 1:CAS:528:DC%2BC38XhsFGqtrzK, PID: 23104877
    • Schonrock N, Harvey RP, Mattick JS (2012) Long noncoding RNAs in cardiac development and pathophysiology. Circ Res 111:1349–1362
    • (2012) Circ Res , vol.111 , pp. 1349-1362
    • Schonrock, N.1    Harvey, R.P.2    Mattick, J.S.3
  • 85
    • 33750212321 scopus 로고    scopus 로고
    • Nuclear organization of active and inactive chromatin domains uncovered by chromosome conformation capture-on-chip (4C)
    • COI: 1:CAS:528:DC%2BD28XhtFeisbvF, PID: 17033623
    • Simonis M, Klous P, Splinter E, Moshkin Y, Willemsen R, de Wit E, van Steensel B, de Laat W (2006) Nuclear organization of active and inactive chromatin domains uncovered by chromosome conformation capture-on-chip (4C). Nat Genet 38:1348–1354
    • (2006) Nat Genet , vol.38 , pp. 1348-1354
    • Simonis, M.1    Klous, P.2    Splinter, E.3    Moshkin, Y.4    Willemsen, R.5    de Wit, E.6    van Steensel, B.7    de Laat, W.8
  • 86
    • 33748259774 scopus 로고    scopus 로고
    • CTCF mediates long-range chromatin looping and local histone modification in the beta-globin locus
    • COI: 1:CAS:528:DC%2BD28XptlSntrY%3D, PID: 16951251
    • Splinter E, Heath H, Kooren J, Palstra RJ, Klous P, Grosveld F, Galjart N, de Laat W (2006) CTCF mediates long-range chromatin looping and local histone modification in the beta-globin locus. Genes Dev 20:2349–2354
    • (2006) Genes Dev , vol.20 , pp. 2349-2354
    • Splinter, E.1    Heath, H.2    Kooren, J.3    Palstra, R.J.4    Klous, P.5    Grosveld, F.6    Galjart, N.7    de Laat, W.8
  • 87
    • 84896879856 scopus 로고    scopus 로고
    • Small but sturdy: small RNAs in cellular memory and epigenetics
    • COI: 1:CAS:528:DC%2BC2cXlt1elsbw%3D, PID: 24589774
    • Stuwe E, Toth KF, Aravin AA (2014) Small but sturdy: small RNAs in cellular memory and epigenetics. Genes Dev 28:423–431
    • (2014) Genes Dev , vol.28 , pp. 423-431
    • Stuwe, E.1    Toth, K.F.2    Aravin, A.A.3
  • 89
    • 33644852483 scopus 로고    scopus 로고
    • Mediator as a general transcription factor
    • COI: 1:CAS:528:DC%2BD28Xht1CgsQ%3D%3D, PID: 16263706
    • Takagi Y, Kornberg RD (2006) Mediator as a general transcription factor. J Biol Chem 281:80–89
    • (2006) J Biol Chem , vol.281 , pp. 80-89
    • Takagi, Y.1    Kornberg, R.D.2
  • 90
    • 84908352990 scopus 로고    scopus 로고
    • Depletion of the chromatin looping proteins CTCF and cohesin causes chromatin compaction: insight into chromatin folding by polymer modelling
    • PID: 25299688
    • Tark-Dame M, Jerabek H, Manders EM, Heermann DW, van Driel R (2014) Depletion of the chromatin looping proteins CTCF and cohesin causes chromatin compaction: insight into chromatin folding by polymer modelling. PLoS Comput Biol 10:e1003877
    • (2014) PLoS Comput Biol , vol.10 , pp. 1003877
    • Tark-Dame, M.1    Jerabek, H.2    Manders, E.M.3    Heermann, D.W.4    van Driel, R.5
  • 92
    • 77958472025 scopus 로고    scopus 로고
    • The long noncoding RNA, Jpx, is a molecular switch for X chromosome inactivation
    • COI: 1:CAS:528:DC%2BC3cXhtlKhs73K, PID: 21029862
    • Tian D, Sun S, Lee JT (2010) The long noncoding RNA, Jpx, is a molecular switch for X chromosome inactivation. Cell 143:390–403
    • (2010) Cell , vol.143 , pp. 390-403
    • Tian, D.1    Sun, S.2    Lee, J.T.3
  • 93
    • 84907487081 scopus 로고    scopus 로고
    • Transcriptional regulation mechanism mediated by miRNA-DNA*DNA triplex structure stabilized by Argonaute
    • COI: 1:CAS:528:DC%2BC2cXht1OqsLjO, PID: 25086339
    • Toscano-Garibay JD, Aquino-Jarquin G (2014) Transcriptional regulation mechanism mediated by miRNA-DNA*DNA triplex structure stabilized by Argonaute. Biochim Biophys Acta 1839:1079–1083
    • (2014) Biochim Biophys Acta , vol.1839 , pp. 1079-1083
    • Toscano-Garibay, J.D.1    Aquino-Jarquin, G.2
  • 94
    • 84988945264 scopus 로고    scopus 로고
    • Chromatin accessibility: a window into the genome
    • Tsompana M, Buck MJ (2014) Chromatin accessibility: a window into the genome. Epigenet Chromatin 7:33
    • (2014) Epigenet Chromatin , vol.7 , pp. 33
    • Tsompana, M.1    Buck, M.J.2
  • 95
    • 84879987789 scopus 로고    scopus 로고
    • lincRNAs: genomics, evolution, and mechanisms
    • COI: 1:CAS:528:DC%2BC3sXhtVGktrbP, PID: 23827673
    • Ulitsky I, Bartel DP (2013) lincRNAs: genomics, evolution, and mechanisms. Cell 154:26–46
    • (2013) Cell , vol.154 , pp. 26-46
    • Ulitsky, I.1    Bartel, D.P.2
  • 96
    • 70249088327 scopus 로고    scopus 로고
    • Genomic views of distant-acting enhancers
    • COI: 1:CAS:528:DC%2BD1MXhtFSnt7rM, PID: 19741700
    • Visel A, Rubin EM, Pennacchio LA (2009) Genomic views of distant-acting enhancers. Nature 461:199–205
    • (2009) Nature , vol.461 , pp. 199-205
    • Visel, A.1    Rubin, E.M.2    Pennacchio, L.A.3
  • 97
    • 84887033381 scopus 로고    scopus 로고
    • A novel non-coding RNA lncRNA-JADE connects DNA damage signalling to histone H4 acetylation
    • COI: 1:CAS:528:DC%2BC3sXhsFOitLvO, PID: 24097061
    • Wan G, Hu X, Liu Y, Han C, Sood AK, Calin GA, Zhang X, Lu X (2013) A novel non-coding RNA lncRNA-JADE connects DNA damage signalling to histone H4 acetylation. EMBO J 32:2833–2847
    • (2013) EMBO J , vol.32 , pp. 2833-2847
    • Wan, G.1    Hu, X.2    Liu, Y.3    Han, C.4    Sood, A.K.5    Calin, G.A.6    Zhang, X.7    Lu, X.8
  • 98
    • 80053045739 scopus 로고    scopus 로고
    • Molecular mechanisms of long noncoding RNAs
    • COI: 1:CAS:528:DC%2BC3MXhtFymsLjP, PID: 21925379
    • Wang KC, Chang HY (2011) Molecular mechanisms of long noncoding RNAs. Mol Cell 43:904–914
    • (2011) Mol Cell , vol.43 , pp. 904-914
    • Wang, K.C.1    Chang, H.Y.2
  • 101
    • 84856998951 scopus 로고    scopus 로고
    • The long arm of long noncoding RNAs: roles as sensors regulating gene transcriptional programs
    • PID: 20573714
    • Wang X, Song X, Glass CK, Rosenfeld MG (2011b) The long arm of long noncoding RNAs: roles as sensors regulating gene transcriptional programs. Cold Spring Harb Perspect Biol 3:a003756
    • (2011) Cold Spring Harb Perspect Biol , vol.3 , pp. 003756
    • Wang, X.1    Song, X.2    Glass, C.K.3    Rosenfeld, M.G.4
  • 102
    • 79960984020 scopus 로고    scopus 로고
    • Shaping the genome with non-coding RNAs
    • COI: 1:CAS:528:DC%2BC3MXhtVSms7fI, PID: 21874119
    • Wang XQ, Crutchley JL, Dostie J (2011c) Shaping the genome with non-coding RNAs. Curr Genomics 12:307–321
    • (2011) Curr Genomics , vol.12 , pp. 307-321
    • Wang, X.Q.1    Crutchley, J.L.2    Dostie, J.3
  • 103
    • 84856381414 scopus 로고    scopus 로고
    • The accumulation of gene regulation through time
    • COI: 1:CAS:528:DC%2BC3MXht1yqs7fL, PID: 21398425
    • Warnefors M, Eyre-Walker A (2011) The accumulation of gene regulation through time. Genome Biol Evol 3:667–673
    • (2011) Genome Biol Evol , vol.3 , pp. 667-673
    • Warnefors, M.1    Eyre-Walker, A.2
  • 105
    • 67649671961 scopus 로고    scopus 로고
    • Long noncoding RNAs: functional surprises from the RNA world
    • COI: 1:CAS:528:DC%2BD1MXos1GitLw%3D, PID: 19571179
    • Wilusz JE, Sunwoo H, Spector DL (2009) Long noncoding RNAs: functional surprises from the RNA world. Genes Dev 23:1494–1504
    • (2009) Genes Dev , vol.23 , pp. 1494-1504
    • Wilusz, J.E.1    Sunwoo, H.2    Spector, D.L.3
  • 106
    • 33645969310 scopus 로고    scopus 로고
    • Chromatin architecture
    • COI: 1:CAS:528:DC%2BD28Xjs1GrsLs%3D, PID: 16540311
    • Woodcock CL (2006) Chromatin architecture. Curr Opin Struct Biol 16:213–220
    • (2006) Curr Opin Struct Biol , vol.16 , pp. 213-220
    • Woodcock, C.L.1
  • 107
    • 0036479009 scopus 로고    scopus 로고
    • Chromosomal silencing and localization are mediated by different domains of Xist RNA
    • COI: 1:CAS:528:DC%2BD38XhtFWltL4%3D, PID: 11780141
    • Wutz A, Rasmussen TP, Jaenisch R (2002) Chromosomal silencing and localization are mediated by different domains of Xist RNA. Nat Genet 30:167–174
    • (2002) Nat Genet , vol.30 , pp. 167-174
    • Wutz, A.1    Rasmussen, T.P.2    Jaenisch, R.3
  • 108
    • 84899939074 scopus 로고    scopus 로고
    • Human colorectal cancer-specific CCAT1-L lncRNA regulates long-range chromatin interactions at the MYC locus
    • COI: 1:CAS:528:DC%2BC2cXkslGrs7o%3D, PID: 24662484
    • Xiang JF, Yin QF, Chen T, Zhang Y, Zhang XO, Wu Z, Zhang S, Wang HB, Ge J, Lu X et al (2014) Human colorectal cancer-specific CCAT1-L lncRNA regulates long-range chromatin interactions at the MYC locus. Cell Res 24:513–531
    • (2014) Cell Res , vol.24 , pp. 513-531
    • Xiang, J.F.1    Yin, Q.F.2    Chen, T.3    Zhang, Y.4    Zhang, X.O.5    Wu, Z.6    Zhang, S.7    Wang, H.B.8    Ge, J.9    Lu, X.10
  • 109
    • 84907500489 scopus 로고    scopus 로고
    • LncRNA: a link between RNA and cancer
    • COI: 1:CAS:528:DC%2BC2cXhsVOhsrbE, PID: 25159663
    • Yang G, Lu X, Yuan L (2014) LncRNA: a link between RNA and cancer. Biochim Biophys Acta 1839:1097–1109
    • (2014) Biochim Biophys Acta , vol.1839 , pp. 1097-1109
    • Yang, G.1    Lu, X.2    Yuan, L.3
  • 110
    • 34250619257 scopus 로고    scopus 로고
    • RNA as a flexible scaffold for proteins: yeast telomerase and beyond
    • COI: 1:CAS:528:DC%2BD2sXls1yrtr8%3D, PID: 17381300
    • Zappulla DC, Cech TR (2006) RNA as a flexible scaffold for proteins: yeast telomerase and beyond. Cold Spring Harb Symp Quant Biol 71:217–224
    • (2006) Cold Spring Harb Symp Quant Biol , vol.71 , pp. 217-224
    • Zappulla, D.C.1    Cech, T.R.2
  • 112
    • 33750203582 scopus 로고    scopus 로고
    • Circular chromosome conformation capture (4C) uncovers extensive networks of epigenetically regulated intra- and interchromosomal interactions
    • COI: 1:CAS:528:DC%2BD28XhtFeisbvP, PID: 17033624
    • Zhao Z, Tavoosidana G, Sjolinder M, Gondor A, Mariano P, Wang S, Kanduri C, Lezcano M, Sandhu KS, Singh U et al (2006) Circular chromosome conformation capture (4C) uncovers extensive networks of epigenetically regulated intra- and interchromosomal interactions. Nat Genet 38:1341–1347
    • (2006) Nat Genet , vol.38 , pp. 1341-1347
    • Zhao, Z.1    Tavoosidana, G.2    Sjolinder, M.3    Gondor, A.4    Mariano, P.5    Wang, S.6    Kanduri, C.7    Lezcano, M.8    Sandhu, K.S.9    Singh, U.10


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.