-
1
-
-
0038342438
-
Unique gene expression profiles of human macrophages and dendritic cells to phylogenetically distinct parasites
-
Chaussabel D. Unique gene expression profiles of human macrophages and dendritic cells to phylogenetically distinct parasites. Blood 2003, 102:672-681.
-
(2003)
Blood
, vol.102
, pp. 672-681
-
-
Chaussabel, D.1
-
2
-
-
0344304443
-
Interferon-stimulated transcription and innate antiviral immunity require deacetylase activity and histone deacetylase 1
-
Nusinzon I. Interferon-stimulated transcription and innate antiviral immunity require deacetylase activity and histone deacetylase 1. Proc Natl Acad Sci USA 2003, 100:14742-14747.
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 14742-14747
-
-
Nusinzon, I.1
-
3
-
-
34250823515
-
Gene-specific control of inflammation by TLR-induced chromatin modifications
-
Foster S.L., Hargreaves D.C., Medzhitov R. Gene-specific control of inflammation by TLR-induced chromatin modifications. Nature 2007, 447:972-978.
-
(2007)
Nature
, vol.447
, pp. 972-978
-
-
Foster, S.L.1
Hargreaves, D.C.2
Medzhitov, R.3
-
4
-
-
33749152085
-
Toll-like receptors: from the discovery of NFκB to new insights into transcriptional regulations in innate immunity
-
Doyle S.L., O'Neill L.A.J. Toll-like receptors: from the discovery of NFκB to new insights into transcriptional regulations in innate immunity. Biochem Pharmacol 2006, 72:1102-1113.
-
(2006)
Biochem Pharmacol
, vol.72
, pp. 1102-1113
-
-
Doyle, S.L.1
O'Neill, L.A.J.2
-
5
-
-
84861904178
-
Genome regulation by long noncoding RNAs
-
Rinn J.L., Chang H.Y. Genome regulation by long noncoding RNAs. Annu Rev Biochem 2012, 81:145-166.
-
(2012)
Annu Rev Biochem
, vol.81
, pp. 145-166
-
-
Rinn, J.L.1
Chang, H.Y.2
-
6
-
-
84857066786
-
Modular regulatory principles of large non-coding RNAs
-
Guttman M., Rinn J.L. Modular regulatory principles of large non-coding RNAs. Nature 2012, 482:339-346.
-
(2012)
Nature
, vol.482
, pp. 339-346
-
-
Guttman, M.1
Rinn, J.L.2
-
7
-
-
84883806117
-
Post-transcriptional gene regulation by long noncoding RNA
-
Yoon J.-H., Abdelmohsen K., Gorospe M. Post-transcriptional gene regulation by long noncoding RNA. J Mol Biol 2012, 10.1016/j.jmb.2012.11.024.
-
(2012)
J Mol Biol
-
-
Yoon, J.-H.1
Abdelmohsen, K.2
Gorospe, M.3
-
8
-
-
84868683051
-
Regulation of mammalian cell differentiation by long non-coding RNAs
-
Hu W., Alvarez-Dominguez J.R., Lodish H.F. Regulation of mammalian cell differentiation by long non-coding RNAs. EMBO Rep 2012, 13:971-983.
-
(2012)
EMBO Rep
, vol.13
, pp. 971-983
-
-
Hu, W.1
Alvarez-Dominguez, J.R.2
Lodish, H.F.3
-
9
-
-
84879987789
-
LincRNAs: genomics, evolution, and mechanisms
-
Ulitsky I., Bartel D.P. lincRNAs: genomics, evolution, and mechanisms. Cell 2013, 154:26-46.
-
(2013)
Cell
, vol.154
, pp. 26-46
-
-
Ulitsky, I.1
Bartel, D.P.2
-
10
-
-
84879969127
-
Ribosome profiling provides evidence that large noncoding RNAs do not encode proteins
-
Guttman M., Russell P., Ingolia N.T., Weissman J.S., Lander E.S. Ribosome profiling provides evidence that large noncoding RNAs do not encode proteins. Cell 2013, 10.1016/j.cell.2013.06.009.
-
(2013)
Cell
-
-
Guttman, M.1
Russell, P.2
Ingolia, N.T.3
Weissman, J.S.4
Lander, E.S.5
-
11
-
-
81055155799
-
Ribosome profiling of mouse embryonic stem cells reveals the complexity and dynamics of mammalian proteomes
-
Ingolia N.T., Lareau L.F., Weissman J.S. Ribosome profiling of mouse embryonic stem cells reveals the complexity and dynamics of mammalian proteomes. Cell 2011, 147:789-802.
-
(2011)
Cell
, vol.147
, pp. 789-802
-
-
Ingolia, N.T.1
Lareau, L.F.2
Weissman, J.S.3
-
12
-
-
84865727393
-
The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression
-
Derrien T., Johnson R., Bussotti G., Tanzer A., Djebali S., Tilgner H., Guernec G., Martin D., Merkel A., Knowles D.G., et al. The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression. Genome Res 2012, 22:1775-1789.
-
(2012)
Genome Res
, vol.22
, pp. 1775-1789
-
-
Derrien, T.1
Johnson, R.2
Bussotti, G.3
Tanzer, A.4
Djebali, S.5
Tilgner, H.6
Guernec, G.7
Martin, D.8
Merkel, A.9
Knowles, D.G.10
-
13
-
-
0023969307
-
The structure and expression of a novel gene activated in early mouse embryogenesis
-
Pachnis V., Brannan C.I., Tilghman S.M. The structure and expression of a novel gene activated in early mouse embryogenesis. EMBO J 1988, 7:673-681.
-
(1988)
EMBO J
, vol.7
, pp. 673-681
-
-
Pachnis, V.1
Brannan, C.I.2
Tilghman, S.M.3
-
14
-
-
0025012640
-
The product of the H19 gene may function as an RNA
-
Brannan C.I., Dees E.C., Ingram R.S., Tilghman S.M. The product of the H19 gene may function as an RNA. Mol Cell Biol 1990, 10:28-36.
-
(1990)
Mol Cell Biol
, vol.10
, pp. 28-36
-
-
Brannan, C.I.1
Dees, E.C.2
Ingram, R.S.3
Tilghman, S.M.4
-
15
-
-
0030026001
-
Requirement for Xist in X chromosome inactivation
-
Penny G.D., Kay G.F., Sheardown S.A., Rastan S., Brockdorff N. Requirement for Xist in X chromosome inactivation. Nature 1996, 379:131-137.
-
(1996)
Nature
, vol.379
, pp. 131-137
-
-
Penny, G.D.1
Kay, G.F.2
Sheardown, S.A.3
Rastan, S.4
Brockdorff, N.5
-
16
-
-
62249133709
-
Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals
-
Guttman M., Amit I., Garber M., French C., Lin M.F., Feldser D., Huarte M., Zuk O., Carey B.W., Cassady J.P., et al. Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals. Nature 2009, 458:223-227.
-
(2009)
Nature
, vol.458
, pp. 223-227
-
-
Guttman, M.1
Amit, I.2
Garber, M.3
French, C.4
Lin, M.F.5
Feldser, D.6
Huarte, M.7
Zuk, O.8
Carey, B.W.9
Cassady, J.P.10
-
17
-
-
0037012881
-
Large-scale transcriptional activity in chromosomes 21 and 22
-
Kapranov P., Cawley S.E., Drenkow J., Bekiranov S., Strausberg R.L., Fodor S.P.A., Gingeras T.R. Large-scale transcriptional activity in chromosomes 21 and 22. Science 2002, 296:916-919.
-
(2002)
Science
, vol.296
, pp. 916-919
-
-
Kapranov, P.1
Cawley, S.E.2
Drenkow, J.3
Bekiranov, S.4
Strausberg, R.L.5
Fodor, S.P.A.6
Gingeras, T.R.7
-
19
-
-
84865757142
-
Landscape of transcription in human cells
-
Djebali S., Davis C.A., Merkel A., Dobin A., Lassmann T., Mortazavi A., Tanzer A., Lagarde J., Lin W., Schlesinger F., et al. Landscape of transcription in human cells. Nature 2012, 489:101-108.
-
(2012)
Nature
, vol.489
, pp. 101-108
-
-
Djebali, S.1
Davis, C.A.2
Merkel, A.3
Dobin, A.4
Lassmann, T.5
Mortazavi, A.6
Tanzer, A.7
Lagarde, J.8
Lin, W.9
Schlesinger, F.10
-
20
-
-
84874248583
-
Divergent transcription of long noncoding RNA/mRNA gene pairs in embryonic stem cells
-
Sigova A.A., Mullen A.C., Molinie B., Gupta S., Orlando D.A., Guenther M.G., Almada A.E., Lin C., Sharp P.A., Giallourakis C.C., et al. Divergent transcription of long noncoding RNA/mRNA gene pairs in embryonic stem cells. Proc Natl Acad Sci USA 2013, 110:2876-2881.
-
(2013)
Proc Natl Acad Sci USA
, vol.110
, pp. 2876-2881
-
-
Sigova, A.A.1
Mullen, A.C.2
Molinie, B.3
Gupta, S.4
Orlando, D.A.5
Guenther, M.G.6
Almada, A.E.7
Lin, C.8
Sharp, P.A.9
Giallourakis, C.C.10
-
21
-
-
84863861287
-
Regulation of chromatin structure by long noncoding RNAs: focus on natural antisense transcripts
-
Magistri M., Faghihi M.A., Laurent G.S., Wahlestedt C. Regulation of chromatin structure by long noncoding RNAs: focus on natural antisense transcripts. Trends Genet 2012, 10.1016/j.tig.2012.03.013.
-
(2012)
Trends Genet
-
-
Magistri, M.1
Faghihi, M.A.2
Laurent, G.S.3
Wahlestedt, C.4
-
22
-
-
55349109963
-
Polycomb proteins targeted by a short repeat RNA to the mouse X chromosome
-
Zhao J., Sun B.K., Erwin J.A., Song J.J., Lee J.T. Polycomb proteins targeted by a short repeat RNA to the mouse X chromosome. Science 2008, 322:750-756.
-
(2008)
Science
, vol.322
, pp. 750-756
-
-
Zhao, J.1
Sun, B.K.2
Erwin, J.A.3
Song, J.J.4
Lee, J.T.5
-
23
-
-
56549111129
-
The air noncoding RNA epigenetically silences transcription by targeting G9a to chromatin
-
Nagano T., Mitchell J.A., Sanz L.A., Pauler F.M., Ferguson-Smith A.C., Feil R., Fraser P. The air noncoding RNA epigenetically silences transcription by targeting G9a to chromatin. Science 2008, 322:1717-1720.
-
(2008)
Science
, vol.322
, pp. 1717-1720
-
-
Nagano, T.1
Mitchell, J.A.2
Sanz, L.A.3
Pauler, F.M.4
Ferguson-Smith, A.C.5
Feil, R.6
Fraser, P.7
-
24
-
-
77954572735
-
Long noncoding RNA as modular scaffold of histone modification complexes
-
Tsai M.C., Manor O., Wan Y., Mosammaparast N., Wang J.K., Lan F., Shi Y., Segal E., Chang H.Y. Long noncoding RNA as modular scaffold of histone modification complexes. Science 2010, 329:689-693.
-
(2010)
Science
, vol.329
, pp. 689-693
-
-
Tsai, M.C.1
Manor, O.2
Wan, Y.3
Mosammaparast, N.4
Wang, J.K.5
Lan, F.6
Shi, Y.7
Segal, E.8
Chang, H.Y.9
-
25
-
-
84874025014
-
The NeST long ncRNA controls microbial susceptibility and epigenetic activation of the interferon-γ locus
-
Gomez J.A., Wapinski O.L., Yang Y.W., Bureau J.-F., Gopinath S., Monack D.M., Chang H.Y., Brahic M., Kirkegaard K. The NeST long ncRNA controls microbial susceptibility and epigenetic activation of the interferon-γ locus. Cell 2013, 152:743-754.
-
(2013)
Cell
, vol.152
, pp. 743-754
-
-
Gomez, J.A.1
Wapinski, O.L.2
Yang, Y.W.3
Bureau, J.-F.4
Gopinath, S.5
Monack, D.M.6
Chang, H.Y.7
Brahic, M.8
Kirkegaard, K.9
-
26
-
-
84881478367
-
A long noncoding RNA mediates both activation and repression of immune response genes
-
Carpenter S., Aiello D., Atianand M.K., Ricci E.P., Gandhi P., Hall L.L., Byron M., Monks B., Henry-Bezy M., Lawrence J.B., et al. A long noncoding RNA mediates both activation and repression of immune response genes. Science 2013, 341:789-792.
-
(2013)
Science
, vol.341
, pp. 789-792
-
-
Carpenter, S.1
Aiello, D.2
Atianand, M.K.3
Ricci, E.P.4
Gandhi, P.5
Hall, L.L.6
Byron, M.7
Monks, B.8
Henry-Bezy, M.9
Lawrence, J.B.10
-
27
-
-
77955323879
-
A large intergenic noncoding RNA induced by p53 mediates global gene repression in the p53 response
-
Huarte M., Guttman M., Feldser D., Garber M., Koziol M.J., Kenzelmann-Broz D., Khalil A.M., Zuk O., Amit I., Rabani M., et al. A large intergenic noncoding RNA induced by p53 mediates global gene repression in the p53 response. Cell 2010, 142:409-419.
-
(2010)
Cell
, vol.142
, pp. 409-419
-
-
Huarte, M.1
Guttman, M.2
Feldser, D.3
Garber, M.4
Koziol, M.J.5
Kenzelmann-Broz, D.6
Khalil, A.M.7
Zuk, O.8
Amit, I.9
Rabani, M.10
-
28
-
-
77951638287
-
Noncoding RNA gas5 is a growth arrest- and starvation-associated repressor of the glucocorticoid receptor
-
Kino T., Hurt D.E., Ichijo T., Nader N., Chrousos G.P. Noncoding RNA gas5 is a growth arrest- and starvation-associated repressor of the glucocorticoid receptor. Sci Signal 2010, 3:ra8.
-
(2010)
Sci Signal
, vol.3
-
-
Kino, T.1
Hurt, D.E.2
Ichijo, T.3
Nader, N.4
Chrousos, G.P.5
-
29
-
-
79959756263
-
Extensive and coordinated transcription of noncoding RNAs within cell-cycle promoters
-
Hung T., Wang Y., Lin M.F., Koegel A.K., Kotake Y., Grant G.D., Horlings H.M., Shah N., Umbricht C., Wang P., et al. Extensive and coordinated transcription of noncoding RNAs within cell-cycle promoters. Nat Genet 2011, 43:621-629.
-
(2011)
Nat Genet
, vol.43
, pp. 621-629
-
-
Hung, T.1
Wang, Y.2
Lin, M.F.3
Koegel, A.K.4
Kotake, Y.5
Grant, G.D.6
Horlings, H.M.7
Shah, N.8
Umbricht, C.9
Wang, P.10
-
30
-
-
33846930357
-
Repression of the human dihydrofolate reductase gene by a non-coding interfering transcript
-
Martianov I., Ramadass A., Serra Barros A., Chow N., Akoulitchev A. Repression of the human dihydrofolate reductase gene by a non-coding interfering transcript. Nature 2007, 445:666-670.
-
(2007)
Nature
, vol.445
, pp. 666-670
-
-
Martianov, I.1
Ramadass, A.2
Serra Barros, A.3
Chow, N.4
Akoulitchev, A.5
-
31
-
-
84880748598
-
A mammalian pseudogene lncRNA at the interface of inflammation and anti-inflammatory therapeutics
-
Rapicavoli N.A., Qu K., Zhang J., Mikhail M., Laberge R.-M., Chang H.Y., Gingeras T. A mammalian pseudogene lncRNA at the interface of inflammation and anti-inflammatory therapeutics. eLife 2013, 2.
-
(2013)
eLife
, pp. 2
-
-
Rapicavoli, N.A.1
Qu, K.2
Zhang, J.3
Mikhail, M.4
Laberge, R.-M.5
Chang, H.Y.6
Gingeras, T.7
-
32
-
-
56549105330
-
HITS-CLIP yields genome-wide insights into brain alternative RNA processing
-
Licatalosi D.D., Mele A., Fak J.J., Ule J., Kayikci M., Chi S.W., Clark T.A., Schweitzer A.C., Blume J.E., Wang X., et al. HITS-CLIP yields genome-wide insights into brain alternative RNA processing. Nature 2008, 456:464-469.
-
(2008)
Nature
, vol.456
, pp. 464-469
-
-
Licatalosi, D.D.1
Mele, A.2
Fak, J.J.3
Ule, J.4
Kayikci, M.5
Chi, S.W.6
Clark, T.A.7
Schweitzer, A.C.8
Blume, J.E.9
Wang, X.10
-
33
-
-
84885423196
-
Negative regulation of lncRNA GAS5 by miR-21
-
Zhang Z., Zhu Z., Watabe K., Zhang X., Bai C., Xu M., Wu F., Mo Y.Y. Negative regulation of lncRNA GAS5 by miR-21. Cell Death Differ 2013, 10.1038/cdd.2013.110.
-
(2013)
Cell Death Differ
-
-
Zhang, Z.1
Zhu, Z.2
Watabe, K.3
Zhang, X.4
Bai, C.5
Xu, M.6
Wu, F.7
Mo, Y.Y.8
-
34
-
-
80054715378
-
A long noncoding RNA controls muscle differentiation by functioning as a competing endogenous RNA
-
Cesana M., Cacchiarelli D., Legnini I., Santini T., Sthandier O., Chinappi M., Tramontano A., Bozzoni I. A long noncoding RNA controls muscle differentiation by functioning as a competing endogenous RNA. Cell 2011, 147:358-369.
-
(2011)
Cell
, vol.147
, pp. 358-369
-
-
Cesana, M.1
Cacchiarelli, D.2
Legnini, I.3
Santini, T.4
Sthandier, O.5
Chinappi, M.6
Tramontano, A.7
Bozzoni, I.8
-
35
-
-
80054689794
-
An extensive microRNA-mediated network of RNA-RNA interactions regulates established oncogenic pathways in glioblastoma
-
Sumazin P., Yang X., Chiu H.-S., Chung W.-J., Iyer A., Llobet-Navas D., Rajbhandari P., Bansal M., Guarnieri P., Silva J., et al. An extensive microRNA-mediated network of RNA-RNA interactions regulates established oncogenic pathways in glioblastoma. Cell 2011, 147:370-381.
-
(2011)
Cell
, vol.147
, pp. 370-381
-
-
Sumazin, P.1
Yang, X.2
Chiu, H.-S.3
Chung, W.-J.4
Iyer, A.5
Llobet-Navas, D.6
Rajbhandari, P.7
Bansal, M.8
Guarnieri, P.9
Silva, J.10
-
36
-
-
84455167606
-
CeRNAs: miRNA target mimic mimics
-
Rubio-Somoza I., Weigel D., Franco-Zorilla J.-M., García J.A., Paz-Ares J. ceRNAs: miRNA target mimic mimics. Cell 2011, 147:1431-1432.
-
(2011)
Cell
, vol.147
, pp. 1431-1432
-
-
Rubio-Somoza, I.1
Weigel, D.2
Franco-Zorilla, J.-M.3
García, J.A.4
Paz-Ares, J.5
-
37
-
-
80054681545
-
In vivo identification of tumor-suppressive PTEN ceRNAs in an oncogenic BRAF-induced mouse model of melanoma
-
Karreth F.A., Tay Y., Perna D., Ala U., Tan S.M., Rust A.G., DeNicola G., Webster K.A., Weiss D., Perez-Mancera P.A., et al. In vivo identification of tumor-suppressive PTEN ceRNAs in an oncogenic BRAF-induced mouse model of melanoma. Cell 2011, 147:382-395.
-
(2011)
Cell
, vol.147
, pp. 382-395
-
-
Karreth, F.A.1
Tay, Y.2
Perna, D.3
Ala, U.4
Tan, S.M.5
Rust, A.G.6
DeNicola, G.7
Webster, K.A.8
Weiss, D.9
Perez-Mancera, P.A.10
-
38
-
-
80054700538
-
Coding-independent regulation of the tumor suppressor PTEN by competing endogenous mRNAs
-
Tay Y., Kats L., Salmena L., Weiss D., Tan S.M., Ala U., Karreth F., Poliseno L., Provero P., Di Cunto F., et al. Coding-independent regulation of the tumor suppressor PTEN by competing endogenous mRNAs. Cell 2011, 147:344-357.
-
(2011)
Cell
, vol.147
, pp. 344-357
-
-
Tay, Y.1
Kats, L.2
Salmena, L.3
Weiss, D.4
Tan, S.M.5
Ala, U.6
Karreth, F.7
Poliseno, L.8
Provero, P.9
Di Cunto, F.10
-
39
-
-
77952698932
-
Evidence for natural antisense transcript-mediated inhibition of microRNA function
-
Faghihi M.A., Zhang M., Huang J., Modarresi F., Van der Brug M.P., Nalls M.A., Cookson M.R., St-Laurent G., Wahlestedt C. Evidence for natural antisense transcript-mediated inhibition of microRNA function. Genome Biol 2010, 11:R56.
-
(2010)
Genome Biol
, vol.11
-
-
Faghihi, M.A.1
Zhang, M.2
Huang, J.3
Modarresi, F.4
Van der Brug, M.P.5
Nalls, M.A.6
Cookson, M.R.7
St-Laurent, G.8
Wahlestedt, C.9
-
40
-
-
84865379361
-
LincRNA-p21 suppresses target mRNA translation
-
Yoon J.-H., Abdelmohsen K., Srikantan S., Yang X., Martindale J.L., De S., Huarte M., Zhan M., Becker K.G., Gorospe M. LincRNA-p21 suppresses target mRNA translation. Mol Cell 2012, 47:648-655.
-
(2012)
Mol Cell
, vol.47
, pp. 648-655
-
-
Yoon, J.-H.1
Abdelmohsen, K.2
Srikantan, S.3
Yang, X.4
Martindale, J.L.5
De, S.6
Huarte, M.7
Zhan, M.8
Becker, K.G.9
Gorospe, M.10
-
41
-
-
84869088820
-
Long non-coding antisense RNA controls Uchl1 translation through an embedded SINEB2 repeat
-
Carrieri C., Cimatti L., Biagioli M., Beugnet A., Zucchelli S., Fedele S., Pesce E., Ferrer I., Collavin L., Santoro C., et al. Long non-coding antisense RNA controls Uchl1 translation through an embedded SINEB2 repeat. Nature 2012, 10.1038/nature11508.
-
(2012)
Nature
-
-
Carrieri, C.1
Cimatti, L.2
Biagioli, M.3
Beugnet, A.4
Zucchelli, S.5
Fedele, S.6
Pesce, E.7
Ferrer, I.8
Collavin, L.9
Santoro, C.10
-
42
-
-
41149112564
-
A natural antisense transcript regulates Zeb2/Sip1 gene expression during Snail1-induced epithelial-mesenchymal transition
-
Beltran M., Puig I., Pena C., Garcia J.M., Alvarez A.B., Pena R., Bonilla F., de Herreros A.G. A natural antisense transcript regulates Zeb2/Sip1 gene expression during Snail1-induced epithelial-mesenchymal transition. Genes Dev 2008, 22:756-769.
-
(2008)
Genes Dev
, vol.22
, pp. 756-769
-
-
Beltran, M.1
Puig, I.2
Pena, C.3
Garcia, J.M.4
Alvarez, A.B.5
Pena, R.6
Bonilla, F.7
de Herreros, A.G.8
-
43
-
-
79951495822
-
LncRNAs transactivate STAU1-mediated mRNA decay by duplexing with 3' UTRs via Alu elements
-
Gong C., Maquat L.E. lncRNAs transactivate STAU1-mediated mRNA decay by duplexing with 3' UTRs via Alu elements. Nature 2011, 470:284-288.
-
(2011)
Nature
, vol.470
, pp. 284-288
-
-
Gong, C.1
Maquat, L.E.2
-
44
-
-
46749083733
-
Expression of a noncoding RNA is elevated in Alzheimer's disease and drives rapid feed-forward regulation of beta-secretase
-
Faghihi M.A., Modarresi F., Khalil A.M., Wood D.E., Sahagan B.G., Morgan T.E., Finch C.E., St-Laurent G., Kenny P.J., Wahlestedt C. Expression of a noncoding RNA is elevated in Alzheimer's disease and drives rapid feed-forward regulation of beta-secretase. Nat Med 2008, 14:723-730.
-
(2008)
Nat Med
, vol.14
, pp. 723-730
-
-
Faghihi, M.A.1
Modarresi, F.2
Khalil, A.M.3
Wood, D.E.4
Sahagan, B.G.5
Morgan, T.E.6
Finch, C.E.7
St-Laurent, G.8
Kenny, P.J.9
Wahlestedt, C.10
-
45
-
-
84870479616
-
Long non-coding RNA gadd7 interacts with TDP-43 and regulates Cdk6 mRNA decay
-
Liu X., Li D., Zhang W., Guo M., Zhan Q. Long non-coding RNA gadd7 interacts with TDP-43 and regulates Cdk6 mRNA decay. EMBO J 2012, 10.1038/emboj.2012.292.
-
(2012)
EMBO J
-
-
Liu, X.1
Li, D.2
Zhang, W.3
Guo, M.4
Zhan, Q.5
-
46
-
-
77956927823
-
The nuclear-retained noncoding RNA MALAT1 regulates alternative splicing by modulating SR splicing factor phosphorylation
-
Tripathi V., Ellis J.D., Shen Z., Song D.Y., Pan Q., Watt A.T., Freier S.M., Bennett C.F., Sharma A., Bubulya P.A., et al. The nuclear-retained noncoding RNA MALAT1 regulates alternative splicing by modulating SR splicing factor phosphorylation. Mol Cell 2010, 39:925-938.
-
(2010)
Mol Cell
, vol.39
, pp. 925-938
-
-
Tripathi, V.1
Ellis, J.D.2
Shen, Z.3
Song, D.Y.4
Pan, Q.5
Watt, A.T.6
Freier, S.M.7
Bennett, C.F.8
Sharma, A.9
Bubulya, P.A.10
-
47
-
-
84868152631
-
Long noncoding RNAs with snoRNA ends
-
Yin Q.-F., Yang L., Zhang Y., Xiang J.-F., Wu Y.-W., Carmichael G.G., Chen L.L. Long noncoding RNAs with snoRNA ends. Mol Cell 2012, 48:219-230.
-
(2012)
Mol Cell
, vol.48
, pp. 219-230
-
-
Yin, Q.-F.1
Yang, L.2
Zhang, Y.3
Xiang, J.-F.4
Wu, Y.-W.5
Carmichael, G.G.6
Chen, L.L.7
-
48
-
-
67649160600
-
Genome-wide identification of long noncoding RNAs in CD8+ T cells
-
Pang K.C., Dinger M.E., Mercer T.R., Malquori L., Grimmond S.M., Chen W., Mattick J.S. Genome-wide identification of long noncoding RNAs in CD8+ T cells. J Immunol 2009, 182:7738-7748.
-
(2009)
J Immunol
, vol.182
, pp. 7738-7748
-
-
Pang, K.C.1
Dinger, M.E.2
Mercer, T.R.3
Malquori, L.4
Grimmond, S.M.5
Chen, W.6
Mattick, J.S.7
-
49
-
-
84875785000
-
Role of microRNAs and long-non-coding RNAs in CD4+ T-cell differentiation
-
Pagani M., Rossetti G., Panzeri I., de Candia P., Bonnal R.J.P., Rossi R.L., Geginat J., Abrignani S. Role of microRNAs and long-non-coding RNAs in CD4+ T-cell differentiation. Immunol Rev 2013, 253:82-96.
-
(2013)
Immunol Rev
, vol.253
, pp. 82-96
-
-
Pagani, M.1
Rossetti, G.2
Panzeri, I.3
de Candia, P.4
Bonnal, R.J.P.5
Rossi, R.L.6
Geginat, J.7
Abrignani, S.8
-
50
-
-
79952137666
-
Unique signatures of long noncoding RNA expression in response to virus infection and altered innate immune signaling
-
e00206-10-e00206-18
-
Peng X., Gralinski L., Armour C.D., Ferris M.T., Thomas M.J., Proll S., Bradel-Tretheway B.G., Korth M.J., Castle J.C., Biery M.C., et al. Unique signatures of long noncoding RNA expression in response to virus infection and altered innate immune signaling. mBio 2010, 1. e00206-10-e00206-18.
-
(2010)
mBio
, vol.1
-
-
Peng, X.1
Gralinski, L.2
Armour, C.D.3
Ferris, M.T.4
Thomas, M.J.5
Proll, S.6
Bradel-Tretheway, B.G.7
Korth, M.J.8
Castle, J.C.9
Biery, M.C.10
-
51
-
-
84872325020
-
LncRNA expression signatures in response to enterovirus 71 infection
-
Yin Z., Guan D., Fan Q., Su J., Zheng W., Ma W., Ke C. lncRNA expression signatures in response to enterovirus 71 infection. Biochem Biophys Res Commun 2013, 430:629-633.
-
(2013)
Biochem Biophys Res Commun
, vol.430
, pp. 629-633
-
-
Yin, Z.1
Guan, D.2
Fan, Q.3
Su, J.4
Zheng, W.5
Ma, W.6
Ke, C.7
-
52
-
-
84886724189
-
Expression and regulation of intergenic long noncoding RNAs during T cell development and differentiation
-
Hu G., Tang Q., Sharma S., Yu F., Escobar T.M., Muljo S.A., Zhu J., Zhao K. Expression and regulation of intergenic long noncoding RNAs during T cell development and differentiation. Nat Immunol 2013, 10.1038/ni.2712.
-
(2013)
Nat Immunol
-
-
Hu, G.1
Tang, Q.2
Sharma, S.3
Yu, F.4
Escobar, T.M.5
Muljo, S.A.6
Zhu, J.7
Zhao, K.8
-
53
-
-
0038371368
-
Tmevpg1, a candidate gene for the control of Theiler's virus persistence, could be implicated in the regulation of gamma interferon
-
Vigneau S., Rohrlich P.-S., Brahic M., Bureau J.-F. Tmevpg1, a candidate gene for the control of Theiler's virus persistence, could be implicated in the regulation of gamma interferon. J Virol 2003, 77:5632-5638.
-
(2003)
J Virol
, vol.77
, pp. 5632-5638
-
-
Vigneau, S.1
Rohrlich, P.-S.2
Brahic, M.3
Bureau, J.-F.4
-
54
-
-
84865425772
-
Cutting edge: influence of Tmevpg1, a long intergenic noncoding RNA, on the expression of Ifng by Th1 cells
-
Collier S.P., Collins P.L., Williams C.L., Boothby M.R., Aune T.M. Cutting edge: influence of Tmevpg1, a long intergenic noncoding RNA, on the expression of Ifng by Th1 cells. J Immunol 2012, 189:2084-2088.
-
(2012)
J Immunol
, vol.189
, pp. 2084-2088
-
-
Collier, S.P.1
Collins, P.L.2
Williams, C.L.3
Boothby, M.R.4
Aune, T.M.5
-
55
-
-
84886721967
-
Identification of a KIR antisense lncRNA expressed by progenitor cells
-
Wright P.W., Huehn A., Cichocki F., Li H., Sharma N., Dang H., Lenvik T.R., Woll P., Kaufman D., Miller J.S., et al. Identification of a KIR antisense lncRNA expressed by progenitor cells. Genes Immun 2013, 10.1038/gene.2013.36.
-
(2013)
Genes Immun
-
-
Wright, P.W.1
Huehn, A.2
Cichocki, F.3
Li, H.4
Sharma, N.5
Dang, H.6
Lenvik, T.R.7
Woll, P.8
Kaufman, D.9
Miller, J.S.10
-
56
-
-
63849156246
-
A myelopoiesis-associated regulatory intergenic noncoding RNA transcript within the human HOXA cluster
-
Zhang X., Lian Z., Padden C., Gerstein M.B., Rozowsky J., Snyder M., Gingeras T.R., Kapranov P., Weissman S.M., Newburger P.E. A myelopoiesis-associated regulatory intergenic noncoding RNA transcript within the human HOXA cluster. Blood 2009, 113:2526-2534.
-
(2009)
Blood
, vol.113
, pp. 2526-2534
-
-
Zhang, X.1
Lian, Z.2
Padden, C.3
Gerstein, M.B.4
Rozowsky, J.5
Snyder, M.6
Gingeras, T.R.7
Kapranov, P.8
Weissman, S.M.9
Newburger, P.E.10
-
57
-
-
77957938117
-
Viruses, microRNAs, and host interactions
-
Skalsky R.L., Cullen B.R. Viruses, microRNAs, and host interactions. Annu Rev Microbiol 2010, 64:123-141.
-
(2010)
Annu Rev Microbiol
, vol.64
, pp. 123-141
-
-
Skalsky, R.L.1
Cullen, B.R.2
-
58
-
-
79959284685
-
A global transcriptional analysis of Plasmodium falciparum malaria reveals a novel family of telomere-associated lncRNAs
-
Broadbent K.M., Park D., Wolf A.R., Van Tyne D., Sims J.S., Ribacke U., Volkman S., Duraisingh M., Wirth D., Sabeti P.C., et al. A global transcriptional analysis of Plasmodium falciparum malaria reveals a novel family of telomere-associated lncRNAs. Genome Biol 2011, 12:R56.
-
(2011)
Genome Biol
, vol.12
-
-
Broadbent, K.M.1
Park, D.2
Wolf, A.R.3
Van Tyne, D.4
Sims, J.S.5
Ribacke, U.6
Volkman, S.7
Duraisingh, M.8
Wirth, D.9
Sabeti, P.C.10
-
59
-
-
84876175729
-
Long non-coding RNAs in infection biology
-
Scaria V., Pasha A. Long non-coding RNAs in infection biology. Front Genet 2012, 3:308.
-
(2012)
Front Genet
, vol.3
, pp. 308
-
-
Scaria, V.1
Pasha, A.2
-
60
-
-
84875272744
-
Long noncoding RNAs and viral infections
-
Zhang Q., Jeang K.-T. Long noncoding RNAs and viral infections. BioMedicine 2013, 3:34-42.
-
(2013)
BioMedicine
, vol.3
, pp. 34-42
-
-
Zhang, Q.1
Jeang, K.-T.2
-
61
-
-
84855853263
-
Kaposi's sarcoma-associated herpesvirus noncoding polyadenylated nuclear RNA interacts with virus- and host cell-encoded proteins and suppresses expression of genes involved in immune modulation
-
Rossetto C.C., Pari G.S. Kaposi's sarcoma-associated herpesvirus noncoding polyadenylated nuclear RNA interacts with virus- and host cell-encoded proteins and suppresses expression of genes involved in immune modulation. J Virol 2011, 85:13290-13297.
-
(2011)
J Virol
, vol.85
, pp. 13290-13297
-
-
Rossetto, C.C.1
Pari, G.S.2
-
62
-
-
77953798171
-
Down-regulation of a host microRNA by a herpesvirus saimiri noncoding RNA
-
Cazalla D., Yario T., Steitz J.A. Down-regulation of a host microRNA by a herpesvirus saimiri noncoding RNA. Science 2010, 328:1563-1566.
-
(2010)
Science
, vol.328
, pp. 1563-1566
-
-
Cazalla, D.1
Yario, T.2
Steitz, J.A.3
-
63
-
-
78651325932
-
LncRNAdb: a reference database for long noncoding RNAs
-
Amaral P.P., Clark M.B., Gascoigne D.K., Dinger M.E., Mattick J.S. lncRNAdb: a reference database for long noncoding RNAs. Nucleic Acids Res 2011, 39:D146-D151.
-
(2011)
Nucleic Acids Res
, vol.39
-
-
Amaral, P.P.1
Clark, M.B.2
Gascoigne, D.K.3
Dinger, M.E.4
Mattick, J.S.5
-
64
-
-
84883317153
-
Genome biology: not drowning but waving
-
Bird A. Genome biology: not drowning but waving. Cell 2013, 154:951-952.
-
(2013)
Cell
, vol.154
, pp. 951-952
-
-
Bird, A.1
-
65
-
-
84455206362
-
Conserved function of lincRNAs in vertebrate embryonic development despite rapid sequence evolution
-
Ulitsky I., Shkumatava A., Jan C.H., Sive H., Bartel D.P. Conserved function of lincRNAs in vertebrate embryonic development despite rapid sequence evolution. Cell 2011, 147:1537-1550.
-
(2011)
Cell
, vol.147
, pp. 1537-1550
-
-
Ulitsky, I.1
Shkumatava, A.2
Jan, C.H.3
Sive, H.4
Bartel, D.P.5
-
66
-
-
84864315112
-
The lncRNA Malat1 is dispensable for mouse development but its transcription plays a cis-regulatory role in the adult
-
Zhang B., Arun G., Mao Y.S., Lazar Z., Hung G., Bhattacharjee G., Xiao X., Booth C.J., Wu J., Zhang C., et al. The lncRNA Malat1 is dispensable for mouse development but its transcription plays a cis-regulatory role in the adult. Cell Rep 2012, 2:111-123.
-
(2012)
Cell Rep
, vol.2
, pp. 111-123
-
-
Zhang, B.1
Arun, G.2
Mao, Y.S.3
Lazar, Z.4
Hung, G.5
Bhattacharjee, G.6
Xiao, X.7
Booth, C.J.8
Wu, J.9
Zhang, C.10
-
67
-
-
84864033675
-
Malat1 is not an essential component of nuclear speckles in mice
-
Nakagawa S., Ip J.Y., Shioi G., Tripathi V., Zong X., Hirose T., Prasanth K.V. Malat1 is not an essential component of nuclear speckles in mice. RNA 2012, 18:487-499.
-
(2012)
RNA
, vol.18
, pp. 487-499
-
-
Nakagawa, S.1
Ip, J.Y.2
Shioi, G.3
Tripathi, V.4
Zong, X.5
Hirose, T.6
Prasanth, K.V.7
-
68
-
-
38649114329
-
Specific expression of long noncoding RNAs in the mouse brain
-
Mercer T.R., Dinger M.E., Sunkin S.M., Mehler M.F., Mattick J.S. Specific expression of long noncoding RNAs in the mouse brain. Proc Natl Acad Sci USA 2008, 105:716-721.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 716-721
-
-
Mercer, T.R.1
Dinger, M.E.2
Sunkin, S.M.3
Mehler, M.F.4
Mattick, J.S.5
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