메뉴 건너뛰기




Volumn 1839, Issue 11, 2014, Pages 1079-1083

Transcriptional regulation mechanism mediated by miRNA-DNA•DNA triplex structure stabilized by Argonaute

Author keywords

Argonaute; MicroRNA; Transcriptional regulation; Triple helix structure; Triplex forming miRNA; Triplex forming oligonucleotide

Indexed keywords

ARGONAUTE PROTEIN; DOUBLE STRANDED DNA; MESSENGER RNA; MICRORNA; PURINE; DNA; TRIPLEX DNA;

EID: 84907487081     PISSN: 18749399     EISSN: 18764320     Source Type: Journal    
DOI: 10.1016/j.bbagrm.2014.07.016     Document Type: Review
Times cited : (54)

References (58)
  • 1
    • 84872533627 scopus 로고    scopus 로고
    • RNA interference in the nucleus: roles for small RNAs in transcription, epigenetics and beyond
    • Castel S.E., Martienssen R.A. RNA interference in the nucleus: roles for small RNAs in transcription, epigenetics and beyond. Nat. Rev. Genet. 2013, 14:100-112.
    • (2013) Nat. Rev. Genet. , vol.14 , pp. 100-112
    • Castel, S.E.1    Martienssen, R.A.2
  • 2
    • 84860729656 scopus 로고    scopus 로고
    • MiRNA goes nuclear
    • Huang V., Li L.C. miRNA goes nuclear. RNA Biol. 2012, 9:269-273.
    • (2012) RNA Biol. , vol.9 , pp. 269-273
    • Huang, V.1    Li, L.C.2
  • 4
    • 79956073017 scopus 로고    scopus 로고
    • Potential in vivo roles of nucleic acid triple-helices
    • Buske F.A., Mattick J.S., Bailey T.L. Potential in vivo roles of nucleic acid triple-helices. RNA Biol. 2011, 8:427-439.
    • (2011) RNA Biol. , vol.8 , pp. 427-439
    • Buske, F.A.1    Mattick, J.S.2    Bailey, T.L.3
  • 6
    • 84882253822 scopus 로고    scopus 로고
    • RNA interference and personalized cancer therapy
    • Rao D.D., Wang Z., Senzer N., Nemunaitis J. RNA interference and personalized cancer therapy. Discov. Med. 2013, 15:101-110.
    • (2013) Discov. Med. , vol.15 , pp. 101-110
    • Rao, D.D.1    Wang, Z.2    Senzer, N.3    Nemunaitis, J.4
  • 7
    • 84867261219 scopus 로고    scopus 로고
    • Transcriptional targeting by microRNA-polycomb complexes: a novel route in cell fate determination
    • Zardo G., Ciolfi A., Vian L., Billi M., Racanicchi S., Grignani F., Nervi C. Transcriptional targeting by microRNA-polycomb complexes: a novel route in cell fate determination. Cell Cycle 2012, 11:3543-3549.
    • (2012) Cell Cycle , vol.11 , pp. 3543-3549
    • Zardo, G.1    Ciolfi, A.2    Vian, L.3    Billi, M.4    Racanicchi, S.5    Grignani, F.6    Nervi, C.7
  • 8
    • 0037096781 scopus 로고    scopus 로고
    • Design of a novel triple helix-forming oligodeoxyribonucleotide directed to the major promoter of the c-myc gene
    • McGuffie E.M., Catapano C.V. Design of a novel triple helix-forming oligodeoxyribonucleotide directed to the major promoter of the c-myc gene. Nucleic Acids Res. 2002, 30:2701-2709.
    • (2002) Nucleic Acids Res. , vol.30 , pp. 2701-2709
    • McGuffie, E.M.1    Catapano, C.V.2
  • 9
    • 0034520294 scopus 로고    scopus 로고
    • Gene targeted agents: new opportunities for rational drug development
    • Winters T.A. Gene targeted agents: new opportunities for rational drug development. Curr. Opin. Mol. Ther. 2000, 2:670-681.
    • (2000) Curr. Opin. Mol. Ther. , vol.2 , pp. 670-681
    • Winters, T.A.1
  • 10
    • 4644309196 scopus 로고    scopus 로고
    • The functions of animal microRNAs
    • Ambros V. The functions of animal microRNAs. Nature 2004, 431:350-355.
    • (2004) Nature , vol.431 , pp. 350-355
    • Ambros, V.1
  • 11
    • 78549249141 scopus 로고    scopus 로고
    • MicroRNAs, cancer and cancer stem cells
    • Zimmerman A.L., Wu S. MicroRNAs, cancer and cancer stem cells. Cancer Lett. 2011, 300:10-19.
    • (2011) Cancer Lett. , vol.300 , pp. 10-19
    • Zimmerman, A.L.1    Wu, S.2
  • 12
    • 0347444723 scopus 로고    scopus 로고
    • MicroRNAs: genomics, biogenesis, mechanism, and function
    • Bartel D.P. MicroRNAs: genomics, biogenesis, mechanism, and function. Cell 2004, 116:281-297.
    • (2004) Cell , vol.116 , pp. 281-297
    • Bartel, D.P.1
  • 13
    • 54549108798 scopus 로고    scopus 로고
    • MicroRNAs to Nanog, Oct4 and Sox2 coding regions modulate embryonic stem cell differentiation
    • Tay Y., Zhang J., Thomson A.M., Lim B., Rigoutsos I. MicroRNAs to Nanog, Oct4 and Sox2 coding regions modulate embryonic stem cell differentiation. Nature 2008, 455:1124-1128.
    • (2008) Nature , vol.455 , pp. 1124-1128
    • Tay, Y.1    Zhang, J.2    Thomson, A.M.3    Lim, B.4    Rigoutsos, I.5
  • 14
    • 84871434154 scopus 로고    scopus 로고
    • Human TNRC6A is an Argonaute-navigator protein for microRNA-mediated gene silencing in the nucleus
    • Nishi K., Nishi A., Nagasawa T., Ui-Tei K. Human TNRC6A is an Argonaute-navigator protein for microRNA-mediated gene silencing in the nucleus. RNA 2013, 19:17-35.
    • (2013) RNA , vol.19 , pp. 17-35
    • Nishi, K.1    Nishi, A.2    Nagasawa, T.3    Ui-Tei, K.4
  • 17
    • 66249108936 scopus 로고    scopus 로고
    • Promoter targeted small RNAs induce long-term transcriptional gene silencing in human cells
    • Hawkins P.G., Santoso S., Adams C., Anest V., Morris K.V. Promoter targeted small RNAs induce long-term transcriptional gene silencing in human cells. Nucleic Acids Res. 2009, 37:2984-2995.
    • (2009) Nucleic Acids Res. , vol.37 , pp. 2984-2995
    • Hawkins, P.G.1    Santoso, S.2    Adams, C.3    Anest, V.4    Morris, K.V.5
  • 18
    • 33846699083 scopus 로고    scopus 로고
    • A hexanucleotide element directs microRNA nuclear import
    • Hwang H.W., Wentzel E.A., Mendell J.T. A hexanucleotide element directs microRNA nuclear import. Science 2007, 315:97-100.
    • (2007) Science , vol.315 , pp. 97-100
    • Hwang, H.W.1    Wentzel, E.A.2    Mendell, J.T.3
  • 19
    • 34249810892 scopus 로고    scopus 로고
    • Argonaute proteins: mediators of RNA silencing
    • Peters L., Meister G. Argonaute proteins: mediators of RNA silencing. Mol. Cell 2007, 26:611-623.
    • (2007) Mol. Cell , vol.26 , pp. 611-623
    • Peters, L.1    Meister, G.2
  • 20
    • 77956278708 scopus 로고    scopus 로고
    • Deep sequencing of human nuclear and cytoplasmic small RNAs reveals an unexpectedly complex subcellular distribution of miRNAs and tRNA 3' trailers
    • Liao J.Y., Ma L.M., Guo Y.H., Zhang Y.C., Zhou H., Shao P., Chen Y.Q., Qu L.H. Deep sequencing of human nuclear and cytoplasmic small RNAs reveals an unexpectedly complex subcellular distribution of miRNAs and tRNA 3' trailers. PLoS One 2010, 5:e10563.
    • (2010) PLoS One , vol.5 , pp. e10563
    • Liao, J.Y.1    Ma, L.M.2    Guo, Y.H.3    Zhang, Y.C.4    Zhou, H.5    Shao, P.6    Chen, Y.Q.7    Qu, L.H.8
  • 22
  • 23
    • 79959347056 scopus 로고    scopus 로고
    • Transcriptional gene silencing in mammalian cells by miRNA mimics that target gene promoters
    • Younger S.T., Corey D.R. Transcriptional gene silencing in mammalian cells by miRNA mimics that target gene promoters. Nucleic Acids Res. 2011, 39:5682-5691.
    • (2011) Nucleic Acids Res. , vol.39 , pp. 5682-5691
    • Younger, S.T.1    Corey, D.R.2
  • 24
    • 84857784512 scopus 로고    scopus 로고
    • Senescence is an endogenous trigger for microRNA-directed transcriptional gene silencing in human cells
    • Benhamed M., Herbig U., Ye T., Dejean A., Bischof O. Senescence is an endogenous trigger for microRNA-directed transcriptional gene silencing in human cells. Nat. Cell Biol. 2012, 14:266-275.
    • (2012) Nat. Cell Biol. , vol.14 , pp. 266-275
    • Benhamed, M.1    Herbig, U.2    Ye, T.3    Dejean, A.4    Bischof, O.5
  • 25
    • 47649084520 scopus 로고    scopus 로고
    • DNA triple helices: biological consequences and therapeutic potential
    • Jain A., Wang G., Vasquez K.M. DNA triple helices: biological consequences and therapeutic potential. Biochimie 2008, 90:1117-1130.
    • (2008) Biochimie , vol.90 , pp. 1117-1130
    • Jain, A.1    Wang, G.2    Vasquez, K.M.3
  • 27
    • 0014414243 scopus 로고
    • Specificity of the three-stranded complex formation between double-stranded DNA and single-stranded RNA containing repeating nucleotide sequences
    • Morgan A.R., Wells R.D. Specificity of the three-stranded complex formation between double-stranded DNA and single-stranded RNA containing repeating nucleotide sequences. J. Mol. Biol. 1968, 37:63-80.
    • (1968) J. Mol. Biol. , vol.37 , pp. 63-80
    • Morgan, A.R.1    Wells, R.D.2
  • 28
    • 71549153177 scopus 로고    scopus 로고
    • TTS mapping: integrative WEB tool for analysis of triplex formation target DNA sequences, G-quadruplets and non-protein coding regulatory DNA elements in the human genome
    • Jenjaroenpun P., Kuznetsov V.A. TTS mapping: integrative WEB tool for analysis of triplex formation target DNA sequences, G-quadruplets and non-protein coding regulatory DNA elements in the human genome. BMC Genomics 2009, 10(Suppl. 3):S9.
    • (2009) BMC Genomics , vol.10 , pp. S9
    • Jenjaroenpun, P.1    Kuznetsov, V.A.2
  • 29
    • 1542609295 scopus 로고    scopus 로고
    • Targeted gene modification using triplex-forming oligonucleotides
    • Kuan J.Y., Glazer P.M. Targeted gene modification using triplex-forming oligonucleotides. Methods Mol. Biol. 2004, 262:173-194.
    • (2004) Methods Mol. Biol. , vol.262 , pp. 173-194
    • Kuan, J.Y.1    Glazer, P.M.2
  • 30
    • 0028631012 scopus 로고
    • Exclusion of RNA strands from a purine motif triple helix
    • Semerad C.L., Maher L.J. Exclusion of RNA strands from a purine motif triple helix. Nucleic Acids Res. 1994, 22:5321-5325.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 5321-5325
    • Semerad, C.L.1    Maher, L.J.2
  • 32
    • 0031761185 scopus 로고    scopus 로고
    • Triple helix-forming oligonucleotides which make imperfect Watson-Crick duplexes that compete with the creation of the triplex
    • Porumb H., Gousset H., Taillandier E. Triple helix-forming oligonucleotides which make imperfect Watson-Crick duplexes that compete with the creation of the triplex. Electrophoresis 1998, 19:2389-2390.
    • (1998) Electrophoresis , vol.19 , pp. 2389-2390
    • Porumb, H.1    Gousset, H.2    Taillandier, E.3
  • 33
    • 0027089978 scopus 로고
    • Stability and properties of double and triple helices: dramatic effects of RNA or DNA backbone composition
    • Roberts R.W., Crothers D.M. Stability and properties of double and triple helices: dramatic effects of RNA or DNA backbone composition. Science 1992, 258:1463-1466.
    • (1992) Science , vol.258 , pp. 1463-1466
    • Roberts, R.W.1    Crothers, D.M.2
  • 34
    • 0027715886 scopus 로고
    • Stability of triple helices containing RNA and DNA strands: experimental and molecular modeling studies
    • Escude C., Francois J.C., Sun J.S., Ott G., Sprinzl M., Garestier T., Helene C. Stability of triple helices containing RNA and DNA strands: experimental and molecular modeling studies. Nucleic Acids Res. 1993, 21:5547-5553.
    • (1993) Nucleic Acids Res. , vol.21 , pp. 5547-5553
    • Escude, C.1    Francois, J.C.2    Sun, J.S.3    Ott, G.4    Sprinzl, M.5    Garestier, T.6    Helene, C.7
  • 35
    • 69149104281 scopus 로고    scopus 로고
    • Triplex structures in an RNA pseudoknot enhance mechanical stability and increase efficiency of -1 ribosomal frameshifting
    • Chen G., Chang K.Y., Chou M.Y., Bustamante C., Tinoco I. Triplex structures in an RNA pseudoknot enhance mechanical stability and increase efficiency of -1 ribosomal frameshifting. Proc. Natl. Acad. Sci. U. S. A. 2009, 106:12706-12711.
    • (2009) Proc. Natl. Acad. Sci. U. S. A. , vol.106 , pp. 12706-12711
    • Chen, G.1    Chang, K.Y.2    Chou, M.Y.3    Bustamante, C.4    Tinoco, I.5
  • 36
    • 77950496505 scopus 로고    scopus 로고
    • An intermolecular RNA triplex provides insight into structural determinants for the pseudoknot stimulator of -1 ribosomal frameshifting
    • Chou M.Y., Chang K.Y. An intermolecular RNA triplex provides insight into structural determinants for the pseudoknot stimulator of -1 ribosomal frameshifting. Nucleic Acids Res. 2010, 38:1676-1685.
    • (2010) Nucleic Acids Res. , vol.38 , pp. 1676-1685
    • Chou, M.Y.1    Chang, K.Y.2
  • 37
    • 0029942301 scopus 로고    scopus 로고
    • Structural features and stability of an RNA triple helix in solution
    • Holland J.A., Hoffman D.W. Structural features and stability of an RNA triple helix in solution. Nucleic Acids Res. 1996, 24:2841-2848.
    • (1996) Nucleic Acids Res. , vol.24 , pp. 2841-2848
    • Holland, J.A.1    Hoffman, D.W.2
  • 39
    • 84901424245 scopus 로고    scopus 로고
    • Macros in microRNA target identification: a comparative analysis of in silico, in vitro, and in vivo approaches to microRNA target identification
    • Tarang S., Weston M.D. Macros in microRNA target identification: a comparative analysis of in silico, in vitro, and in vivo approaches to microRNA target identification. RNA Biol. 2014, 11.
    • (2014) RNA Biol. , vol.11
    • Tarang, S.1    Weston, M.D.2
  • 40
    • 33846930357 scopus 로고    scopus 로고
    • Repression of the human dihydrofolate reductase gene by a non-coding interfering transcript
    • Martianov I., Ramadass A., Serra Barros A., Chow N., Akoulitchev A. Repression of the human dihydrofolate reductase gene by a non-coding interfering transcript. Nature 2007, 445:666-670.
    • (2007) Nature , vol.445 , pp. 666-670
    • Martianov, I.1    Ramadass, A.2    Serra Barros, A.3    Chow, N.4    Akoulitchev, A.5
  • 41
    • 77958576363 scopus 로고    scopus 로고
    • Interaction of noncoding RNA with the rDNA promoter mediates recruitment of DNMT3b and silencing of rRNA genes
    • Schmitz K.M., Mayer C., Postepska A., Grummt I. Interaction of noncoding RNA with the rDNA promoter mediates recruitment of DNMT3b and silencing of rRNA genes. Genes Dev. 2010, 24:2264-2269.
    • (2010) Genes Dev. , vol.24 , pp. 2264-2269
    • Schmitz, K.M.1    Mayer, C.2    Postepska, A.3    Grummt, I.4
  • 42
    • 18644380297 scopus 로고    scopus 로고
    • Oxazine 170 induces DNA:RNA:DNA triplex formation
    • Song G., Xing F., Qu X., Chaires J.B., Ren J. Oxazine 170 induces DNA:RNA:DNA triplex formation. J. Med. Chem. 2005, 48:3471-3473.
    • (2005) J. Med. Chem. , vol.48 , pp. 3471-3473
    • Song, G.1    Xing, F.2    Qu, X.3    Chaires, J.B.4    Ren, J.5
  • 43
    • 0035369702 scopus 로고    scopus 로고
    • Selection and identification of proteins bound to DNA triple-helical structures by combination of 2D-electrophoresis and MALDI-TOF mass spectrometry
    • Guillonneau F., Guieysse A.L., Le Caer J.P., Rossier J., Praseuth D. Selection and identification of proteins bound to DNA triple-helical structures by combination of 2D-electrophoresis and MALDI-TOF mass spectrometry. Nucleic Acids Res. 2001, 29:2427-2436.
    • (2001) Nucleic Acids Res. , vol.29 , pp. 2427-2436
    • Guillonneau, F.1    Guieysse, A.L.2    Le Caer, J.P.3    Rossier, J.4    Praseuth, D.5
  • 44
    • 0036257399 scopus 로고    scopus 로고
    • Interaction in vitro of type III intermediate filament proteins with triplex DNA
    • Li G., Tolstonog G.V., Traub P. Interaction in vitro of type III intermediate filament proteins with triplex DNA. DNA Cell Biol. 2002, 21:163-188.
    • (2002) DNA Cell Biol. , vol.21 , pp. 163-188
    • Li, G.1    Tolstonog, G.V.2    Traub, P.3
  • 45
    • 0036796374 scopus 로고    scopus 로고
    • Having it both ways: transcription factors that bind DNA and RNA
    • Cassiday L.A., Maher L.J. Having it both ways: transcription factors that bind DNA and RNA. Nucleic Acids Res. 2002, 30:4118-4126.
    • (2002) Nucleic Acids Res. , vol.30 , pp. 4118-4126
    • Cassiday, L.A.1    Maher, L.J.2
  • 46
    • 23044462174 scopus 로고    scopus 로고
    • Stabilization of purine motif DNA triplex by a tetrapeptide from the binding domain of HMGBI protein
    • Jain A., Akanchha S., Rajeswari M.R. Stabilization of purine motif DNA triplex by a tetrapeptide from the binding domain of HMGBI protein. Biochimie 2005, 87:781-790.
    • (2005) Biochimie , vol.87 , pp. 781-790
    • Jain, A.1    Akanchha, S.2    Rajeswari, M.R.3
  • 48
    • 0028227261 scopus 로고
    • Characterization of a new monoclonal antibody to triplex DNA and immunofluorescent staining of mammalian chromosomes
    • Agazie Y.M., Lee J.S., Burkholder G.D. Characterization of a new monoclonal antibody to triplex DNA and immunofluorescent staining of mammalian chromosomes. J. Biol. Chem. 1994, 269:7019-7023.
    • (1994) J. Biol. Chem. , vol.269 , pp. 7019-7023
    • Agazie, Y.M.1    Lee, J.S.2    Burkholder, G.D.3
  • 49
    • 0036765863 scopus 로고    scopus 로고
    • Triplex-forming DNAs in the human interphase nucleus visualized in situ by polypurine/polypyrimidine DNA probes and antitriplex antibodies
    • Ohno M., Fukagawa T., Lee J.S., Ikemura T. Triplex-forming DNAs in the human interphase nucleus visualized in situ by polypurine/polypyrimidine DNA probes and antitriplex antibodies. Chromosoma 2002, 111:201-213.
    • (2002) Chromosoma , vol.111 , pp. 201-213
    • Ohno, M.1    Fukagawa, T.2    Lee, J.S.3    Ikemura, T.4
  • 50
    • 77953140972 scopus 로고    scopus 로고
    • Argonaute proteins at a glance
    • Ender C., Meister G. Argonaute proteins at a glance. J. Cell Sci. 2010, 123:1819-1823.
    • (2010) J. Cell Sci. , vol.123 , pp. 1819-1823
    • Ender, C.1    Meister, G.2
  • 51
    • 10644237968 scopus 로고    scopus 로고
    • RNAi-mediated pathways in the nucleus
    • Matzke M.A., Birchler J.A. RNAi-mediated pathways in the nucleus. Nat. Rev. Genet. 2005, 6:24-35.
    • (2005) Nat. Rev. Genet. , vol.6 , pp. 24-35
    • Matzke, M.A.1    Birchler, J.A.2
  • 54
    • 84864629063 scopus 로고    scopus 로고
    • Regulation exerted by miRNAs in the promoter and UTR sequences: MDR1/P-gp expression as a particular case
    • Toscano-Garibay J.D., Aquino-Jarquin G. Regulation exerted by miRNAs in the promoter and UTR sequences: MDR1/P-gp expression as a particular case. DNA Cell Biol. 2012, 31:1358-1364.
    • (2012) DNA Cell Biol. , vol.31 , pp. 1358-1364
    • Toscano-Garibay, J.D.1    Aquino-Jarquin, G.2
  • 57
    • 22244479687 scopus 로고    scopus 로고
    • Contrahelicase activity of the mitochondrial transcription termination factor mtDBP
    • Polosa P.L., Deceglie S., Roberti M., Gadaleta M.N., Cantatore P. Contrahelicase activity of the mitochondrial transcription termination factor mtDBP. Nucleic Acids Res. 2005, 33:3812-3820.
    • (2005) Nucleic Acids Res. , vol.33 , pp. 3812-3820
    • Polosa, P.L.1    Deceglie, S.2    Roberti, M.3    Gadaleta, M.N.4    Cantatore, P.5
  • 58
    • 84858376850 scopus 로고    scopus 로고
    • MicroPIR: an integrated database of microRNA target sites within human promoter sequences
    • Piriyapongsa J., Bootchai C., Ngamphiw C., Tongsima S. microPIR: an integrated database of microRNA target sites within human promoter sequences. PLoS One 2012, 7:e33888.
    • (2012) PLoS One , vol.7 , pp. e33888
    • Piriyapongsa, J.1    Bootchai, C.2    Ngamphiw, C.3    Tongsima, S.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.