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Volumn 28, Issue 5, 2014, Pages 423-431

Small but sturdy: Small RNAs in cellular memory and epigenetics

Author keywords

Argonautes; Cellular memory; Epigenetics; piRNA

Indexed keywords

MICRORNA; PIWI INTERACTING RNA; RNA; SMALL RNA; UNCLASSIFIED DRUG; UNTRANSLATED RNA;

EID: 84896879856     PISSN: 08909369     EISSN: 15495477     Source Type: Journal    
DOI: 10.1101/gad.236414.113     Document Type: Review
Times cited : (52)

References (71)
  • 1
    • 84875697812 scopus 로고    scopus 로고
    • MicroRNA miR-145 inhibits proliferation, invasiveness, and stem cell phenotype of an in vitro endometriosis model by targeting multiple cytoskeletal elements and pluripotency factors
    • Adammek M, Greve B, Kassens N, Schneider C, Bruggemann K, Schuring AN, Starzinski-Powitz A, Kiesel L, Gotte M. 2013. MicroRNA miR-145 inhibits proliferation, invasiveness, and stem cell phenotype of an in vitro endometriosis model by targeting multiple cytoskeletal elements and pluripotency factors. Fertil Steril 99: 1346-1355. e5.
    • (2013) Fertil Steril , vol.99
    • Adammek, M.1    Greve, B.2    Kassens, N.3    Schneider, C.4    Bruggemann, K.5    Schuring, A.N.6    Starzinski-Powitz, A.7    Kiesel, L.8    Gotte, M.9
  • 4
    • 34248160438 scopus 로고    scopus 로고
    • Developmentally regulated piRNA clusters implicate MILI in transposon control
    • Aravin AA, Sachidanandam R, Girard A, Fejes-Toth K, Hannon GJ. 2007. Developmentally regulated piRNA clusters implicate MILI in transposon control. Science 316: 744-747.
    • (2007) Science , vol.316 , pp. 744-747
    • Aravin, A.A.1    Sachidanandam, R.2    Girard, A.3    Fejes-Toth, K.4    Hannon, G.J.5
  • 5
    • 0030048204 scopus 로고    scopus 로고
    • Molecular basis of the pleiotropic phenotype of mice carrying the hypervariable yellow (Ahvy) mutation at the agouti locus
    • Argeson AC, Nelson KK, Siracusa LD. 1996. Molecular basis of the pleiotropic phenotype of mice carrying the hypervariable yellow (Ahvy) mutation at the agouti locus. Genetics 142: 557-567.
    • (1996) Genetics , vol.142 , pp. 557-567
    • Argeson, A.C.1    Nelson, K.K.2    Siracusa, L.D.3
  • 9
    • 84862778053 scopus 로고    scopus 로고
    • Ribosome profiling shows that miR-430 reduces translation before causing mRNA decay in zebrafish
    • Bazzini AA, Lee MT, Giraldez AJ. 2012. Ribosome profiling shows that miR-430 reduces translation before causing mRNA decay in zebrafish. Science 336: 233-237.
    • (2012) Science , vol.336 , pp. 233-237
    • Bazzini, A.A.1    Lee, M.T.2    Giraldez, A.J.3
  • 10
    • 0020317050 scopus 로고
    • The molecular basis of P-M hybrid dysgenesis: The role of the P element, a P-strain-specific transposon family
    • Bingham PM, Kidwell MG, Rubin GM. 1982. The molecular basis of P-M hybrid dysgenesis: The role of the P element, a P-strain-specific transposon family. Cell 29: 995-1004.
    • (1982) Cell , vol.29 , pp. 995-1004
    • Bingham, P.M.1    Kidwell, M.G.2    Rubin, G.M.3
  • 11
    • 33947273235 scopus 로고    scopus 로고
    • Discrete small RNA-generating loci as master regulators of transposon activity in Drosophila
    • Brennecke J, Aravin AA, Stark A, Dus M, Kellis M, Sachidanandam R, Hannon GJ. 2007. Discrete small RNA-generating loci as master regulators of transposon activity in Drosophila. Cell 128: 1089-1103.
    • (2007) Cell , vol.128 , pp. 1089-1103
    • Brennecke, J.1    Aravin, A.A.2    Stark, A.3    Dus, M.4    Kellis, M.5    Sachidanandam, R.6    Hannon, G.J.7
  • 13
    • 0000042464 scopus 로고
    • Transplantation of living nuclei from blastula cells into enucleated frogs' eggs
    • Briggs R, King TJ. 1952. Transplantation of living nuclei from blastula cells into enucleated frogs' eggs. Proc Natl Acad Sci 38: 455-463.
    • (1952) Proc Natl Acad Sci , vol.38 , pp. 455-463
    • Briggs, R.1    King, T.J.2
  • 14
    • 0018639856 scopus 로고
    • Non-Mendelian female sterility in Drosophila melanogaster: Influence of aging and thermic treatments. III. Cumulative effects induced by these factors
    • Bucheton A. 1979. Non-Mendelian female sterility in Drosophila melanogaster: Influence of aging and thermic treatments. III. Cumulative effects induced by these factors. Genetics 93: 131-142.
    • (1979) Genetics , vol.93 , pp. 131-142
    • Bucheton, A.1
  • 15
    • 0029967424 scopus 로고    scopus 로고
    • Sheep cloned by nuclear transfer from a cultured cell line
    • Campbell KH, McWhir J, Ritchie WA, Wilmut I. 1996. Sheep cloned by nuclear transfer from a cultured cell line. Nature 380: 64-66.
    • (1996) Nature , vol.380 , pp. 64-66
    • Campbell, K.H.1    McWhir, J.2    Ritchie, W.A.3    Wilmut, I.4
  • 18
  • 21
    • 84884686616 scopus 로고    scopus 로고
    • Maternal depletion of Piwi, a component of the RNAi system, impacts heterochromatin formation in Drosophila
    • Gu T, Elgin SC. 2013. Maternal depletion of Piwi, a component of the RNAi system, impacts heterochromatin formation in Drosophila. PLoS Genet 9: e1003780.
    • (2013) PLoS Genet , vol.9
    • Gu, T.1    Elgin, S.C.2
  • 23
    • 77955644289 scopus 로고    scopus 로고
    • Mammalian microRNAs predominantly act to decrease target mRNA levels
    • Guo H, Ingolia NT, Weissman JS, Bartel DP. 2010. Mammalian microRNAs predominantly act to decrease target mRNA levels. Nature 466: 835-840.
    • (2010) Nature , vol.466 , pp. 835-840
    • Guo, H.1    Ingolia, N.T.2    Weissman, J.S.3    Bartel, D.P.4
  • 25
    • 84868613084 scopus 로고    scopus 로고
    • The structural biochemistry of Zucchini implicates it as a nuclease in piRNA biogenesis
    • Ipsaro JJ, Haase AD, Knott SR, Joshua-Tor L, Hannon GJ. 2012. The structural biochemistry of Zucchini implicates it as a nuclease in piRNA biogenesis. Nature 491: 279-283.
    • (2012) Nature , vol.491 , pp. 279-283
    • Ipsaro, J.J.1    Haase, A.D.2    Knott, S.R.3    Joshua-Tor, L.4    Hannon, G.J.5
  • 26
    • 80052516351 scopus 로고    scopus 로고
    • Epigenetic licensing of germline gene expression by maternal RNA in C. elegans
    • Johnson CL, Spence AM. 2011. Epigenetic licensing of germline gene expression by maternal RNA in C. elegans. Science 333: 1311-1314.
    • (2011) Science , vol.333 , pp. 1311-1314
    • Johnson, C.L.1    Spence, A.M.2
  • 27
    • 0035839057 scopus 로고    scopus 로고
    • The role of DNA methylation in mammalian epigenetics
    • Jones PA, Takai D. 2001. The role of DNA methylation in mammalian epigenetics. Science 293: 1068-1070.
    • (2001) Science , vol.293 , pp. 1068-1070
    • Jones, P.A.1    Takai, D.2
  • 28
    • 34848858935 scopus 로고    scopus 로고
    • Telomeric trans-silencing: An epigenetic repression combining RNA silencing and heterochromatin formation
    • Josse T, Teysset L, Todeschini AL, Sidor CM, Anxolabehere D, Ronsseray S. 2007. Telomeric trans-silencing: An epigenetic repression combining RNA silencing and heterochromatin formation. PLoS Genet 3: 1633-1643.
    • (2007) PLoS Genet , vol.3 , pp. 1633-1643
    • Josse, T.1    Teysset, L.2    Todeschini, A.L.3    Sidor, C.M.4    Anxolabehere, D.5    Ronsseray, S.6
  • 30
    • 80052991624 scopus 로고    scopus 로고
    • 39 end formation of PIWI-interacting RNAs in vitro
    • Kawaoka S, Izumi N, Katsuma S, Tomari Y. 2011. 39 end formation of PIWI-interacting RNAs in vitro. Mol Cell 43: 1015-1022.
    • (2011) Mol Cell , vol.43 , pp. 1015-1022
    • Kawaoka, S.1    Izumi, N.2    Katsuma, S.3    Tomari, Y.4
  • 31
    • 84870265728 scopus 로고    scopus 로고
    • Drosophila interspecific hybrids phenocopy piRNA-pathway mutants
    • Kelleher ES, Edelman NB, Barbash DA. 2012. Drosophila interspecific hybrids phenocopy piRNA-pathway mutants. PLoS Biol 10: e1001428.
    • (2012) PLoS Biol , vol.10
    • Kelleher, E.S.1    Edelman, N.B.2    Barbash, D.A.3
  • 33
    • 78649679968 scopus 로고    scopus 로고
    • piRNAs, transposon silencing, and Drosophila germline development
    • Khurana JS, Theurkauf W. 2010. piRNAs, transposon silencing, and Drosophila germline development. J Cell Biol 191: 905-913.
    • (2010) J Cell Biol , vol.191 , pp. 905-913
    • Khurana, J.S.1    Theurkauf, W.2
  • 35
    • 42949137056 scopus 로고    scopus 로고
    • 29-O-methyl modification in mouse piRNAs and its methylase
    • Kirino Y, Mourelatos Z. 2007. 29-O-methyl modification in mouse piRNAs and its methylase. Nucleic Acids Symp Ser 51: 417-418.
    • (2007) Nucleic Acids Symp Ser , vol.51 , pp. 417-418
    • Kirino, Y.1    Mourelatos, Z.2
  • 36
    • 33845741236 scopus 로고    scopus 로고
    • Drosophila rasiRNA pathway mutations disrupt embryonic axis specification through activation of an ATR/Chk2 DNA damage response
    • Klattenhoff C, Bratu DP, McGinnis-Schultz N, Koppetsch BS, Cook HA, Theurkauf WE. 2007. Drosophila rasiRNA pathway mutations disrupt embryonic axis specification through activation of an ATR/Chk2 DNA damage response. Dev Cell 12: 45-55.
    • (2007) Dev Cell , vol.12 , pp. 45-55
    • Klattenhoff, C.1    Bratu, D.P.2    McGinnis-Schultz, N.3    Koppetsch, B.S.4    Cook, H.A.5    Theurkauf, W.E.6
  • 39
    • 33847076849 scopus 로고    scopus 로고
    • Chromatin modifications and their function
    • Kouzarides T. 2007. Chromatin modifications and their function. Cell 128: 693-705.
    • (2007) Cell , vol.128 , pp. 693-705
    • Kouzarides, T.1
  • 40
    • 62549159996 scopus 로고    scopus 로고
    • 29-O-methylation stabilizes Piwi-associated small RNAs and ensures DNA elimination in Tetrahymena
    • Kurth HM, Mochizuki K. 2009. 29-O-methylation stabilizes Piwi-associated small RNAs and ensures DNA elimination in Tetrahymena. RNA 15: 675-685.
    • (2009) RNA , vol.15 , pp. 675-685
    • Kurth, H.M.1    Mochizuki, K.2
  • 41
    • 84863624978 scopus 로고    scopus 로고
    • C. elegans piRNAs mediate the genome-wide surveillance of germline transcripts
    • Lee HC, Gu W, Shirayama M, Youngman E, Conte D Jr, Mello CC. 2012. C. elegans piRNAs mediate the genome-wide surveillance of germline transcripts. Cell 150: 78-87.
    • (2012) Cell , vol.150 , pp. 78-87
    • Lee, H.C.1    Gu, W.2    Shirayama, M.3    Youngman, E.4    Conte Jr., D.5    Mello, C.C.6
  • 50
    • 34249880066 scopus 로고    scopus 로고
    • Generation of germlinecompetent induced pluripotent stem cells
    • Okita K, Ichisaka T, Yamanaka S. 2007. Generation of germlinecompetent induced pluripotent stem cells. Nature 448: 313-317.
    • (2007) Nature , vol.448 , pp. 313-317
    • Okita, K.1    Ichisaka, T.2    Yamanaka, S.3
  • 52
    • 0031879856 scopus 로고    scopus 로고
    • Trans-silencing by P elements inserted in subtelomeric heterochromatin involves the Drosophila Polycomb group gene, Enhancer of zeste
    • Roche SE, Rio DC. 1998. Trans-silencing by P elements inserted in subtelomeric heterochromatin involves the Drosophila Polycomb group gene, Enhancer of zeste. Genetics 149: 1839-1855.
    • (1998) Genetics , vol.149 , pp. 1839-1855
    • Roche, S.E.1    Rio, D.C.2
  • 53
    • 0037871774 scopus 로고    scopus 로고
    • Telomeric transgenes and trans-silencing in Drosophila
    • Ronsseray S, Josse T, Boivin A, Anxolabehere D. 2003. Telomeric transgenes and trans-silencing in Drosophila. Genetica 117: 327-335.
    • (2003) Genetica , vol.117 , pp. 327-335
    • Ronsseray, S.1    Josse, T.2    Boivin, A.3    Anxolabehere, D.4
  • 55
    • 84874240831 scopus 로고    scopus 로고
    • Multiple roles for Piwi in silencing Drosophila transposons
    • Rozhkov NV, Hammell M, Hannon GJ. 2013. Multiple roles for Piwi in silencing Drosophila transposons. Genes Dev 27: 400-412.
    • (2013) Genes Dev , vol.27 , pp. 400-412
    • Rozhkov, N.V.1    Hammell, M.2    Hannon, G.J.3
  • 56
    • 0020322599 scopus 로고
    • The molecular basis of P-M hybrid dysgenesis: The nature of induced mutations
    • Rubin GM, Kidwell MG, Bingham PM. 1982. The molecular basis of P-M hybrid dysgenesis: The nature of induced mutations. Cell 29: 987-994.
    • (1982) Cell , vol.29 , pp. 987-994
    • Rubin, G.M.1    Kidwell, M.G.2    Bingham, P.M.3
  • 57
    • 33845436047 scopus 로고    scopus 로고
    • Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans
    • Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP. 2006. Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans. Cell 127: 1193-1207.
    • (2006) Cell , vol.127 , pp. 1193-1207
    • Ruby, J.G.1    Jan, C.2    Player, C.3    Axtell, M.J.4    Lee, W.5    Nusbaum, C.6    Ge, H.7    Bartel, D.P.8
  • 58
    • 78149481868 scopus 로고    scopus 로고
    • The piRNA pathway: A fly's perspective on the guardian of the genome
    • Senti KA, Brennecke J. 2010. The piRNA pathway: A fly's perspective on the guardian of the genome. Trends Genet 26: 499-509.
    • (2010) Trends Genet , vol.26 , pp. 499-509
    • Senti, K.A.1    Brennecke, J.2
  • 60
    • 84870060785 scopus 로고    scopus 로고
    • Transcriptional silencing of transposons by piwi and maelstrom and its impact on chromatin state and gene expression
    • Sienski G, Donertas D, Brennecke J. 2012. Transcriptional silencing of transposons by piwi and maelstrom and its impact on chromatin state and gene expression. Cell 151: 964-980.
    • (2012) Cell , vol.151 , pp. 964-980
    • Sienski, G.1    Donertas, D.2    Brennecke, J.3
  • 61
  • 62
    • 33747195353 scopus 로고    scopus 로고
    • Induction of pluripotent stem cells from mouse embryonic and adult fibroblast cultures by defined factors
    • Takahashi K, Yamanaka S. 2006. Induction of pluripotent stem cells from mouse embryonic and adult fibroblast cultures by defined factors. Cell 126: 663-676.
    • (2006) Cell , vol.126 , pp. 663-676
    • Takahashi, K.1    Yamanaka, S.2
  • 63
  • 64
    • 84869825301 scopus 로고    scopus 로고
    • Crystal structure of the primary piRNA biogenesis factor Zucchini reveals similarity to the bacterial PLD endonuclease Nuc
    • Voigt F, Reuter M, Kasaruho A, Schulz EC, Pillai RS, Barabas O. 2012. Crystal structure of the primary piRNA biogenesis factor Zucchini reveals similarity to the bacterial PLD endonuclease Nuc. RNA 18: 2128-2134.
    • (2012) RNA , vol.18 , pp. 2128-2134
    • Voigt, F.1    Reuter, M.2    Kasaruho, A.3    Schulz, E.C.4    Pillai, R.S.5    Barabas, O.6
  • 65
    • 84862907807 scopus 로고    scopus 로고
    • Drosophila Piwi functions downstream of piRNA production mediating a chromatin-based transposon silencing mechanism in female germ line
    • Wang SH, Elgin SC. 2011. Drosophila Piwi functions downstream of piRNA production mediating a chromatin-based transposon silencing mechanism in female germ line. Proc Natl Acad Sci 108: 21164-21169.
    • (2011) Proc Natl Acad Sci , vol.108 , pp. 21164-21169
    • Wang, S.H.1    Elgin, S.C.2
  • 67
    • 79959994661 scopus 로고    scopus 로고
    • Up-regulation of microRNA-145 promotes differentiation by repressing OCT4 in human endometrial adenocarcinoma cells
    • Wu Y, Liu S, Xin H, Jiang J, Younglai E, Sun S, Wang H. 2011. Up-regulation of microRNA-145 promotes differentiation by repressing OCT4 in human endometrial adenocarcinoma cells. Cancer 117: 3989-3998.
    • (2011) Cancer , vol.117 , pp. 3989-3998
    • Wu, Y.1    Liu, S.2    Xin, H.3    Jiang, J.4    Younglai, E.5    Sun, S.6    Wang, H.7
  • 68
    • 67349149082 scopus 로고    scopus 로고
    • MicroRNA-145 regulates OCT4, SOX2, and KLF4 and represses pluripotency in human embryonic stem cells
    • Xu N, Papagiannakopoulos T, Pan G, Thomson JA, Kosik KS. 2009. MicroRNA-145 regulates OCT4, SOX2, and KLF4 and represses pluripotency in human embryonic stem cells. Cell 137: 647-658.
    • (2009) Cell , vol.137 , pp. 647-658
    • Xu, N.1    Papagiannakopoulos, T.2    Pan, G.3    Thomson, J.A.4    Kosik, K.S.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.