-
1
-
-
34247488321
-
On homology searches by protein Blast and the characterization of the age of genes
-
Albà MM, Castresana J. 2007. On homology searches by protein Blast and the characterization of the age of genes. BMC Evol Biol. 7:53.
-
(2007)
BMC Evol Biol.
, vol.7
, pp. 53
-
-
Albà, M.M.1
Castresana, J.2
-
2
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
DOI 10.1093/nar/25.17.3389
-
Altschul SF, et al. 1997. Gapped BLASTand PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25:3389-3402. (Pubitemid 27359211)
-
(1997)
Nucleic Acids Research
, vol.25
, Issue.17
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
3
-
-
0034069495
-
Gene ontology: Tool for the unification of biology
-
DOI 10.1038/75556
-
Ashburner M, et al. 2000. Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nat Genet. 25:25-29. (Pubitemid 30257031)
-
(2000)
Nature Genetics
, vol.25
, Issue.1
, pp. 25-29
-
-
Ashburner, M.1
Ball, C.A.2
Blake, J.A.3
Botstein, D.4
Butler, H.5
Cherry, J.M.6
Davis, A.P.7
Dolinski, K.8
Dwight, S.S.9
Eppig, J.T.10
Harris, M.A.11
Hill, D.P.12
Issel-Tarver, L.13
Kasarskis, A.14
Lewis, S.15
Matese, J.C.16
Richardson, J.E.17
Ringwald, M.18
Rubin, G.M.19
Sherlock, G.20
more..
-
4
-
-
34250305146
-
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
-
DOI 10.1038/nature05874, PII NATURE05874
-
Birney E, et al. 2007. Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. Nature 447:799-816. (Pubitemid 46920138)
-
(2007)
Nature
, vol.447
, Issue.7146
, pp. 799-816
-
-
Birney, E.1
Stamatoyannopoulos, J.A.2
Dutta, A.3
Guigo, R.4
Gingeras, T.R.5
Margulies, E.H.6
Weng, Z.7
Snyder, M.8
Dermitzakis, E.T.9
Thurman, R.E.10
Kuehn, M.S.11
Taylor, C.M.12
Neph, S.13
Koch, C.M.14
Asthana, S.15
Malhotra, A.16
Adzhubei, I.17
Greenbaum, J.A.18
Andrews, R.M.19
Flicek, P.20
Boyle, P.J.21
Cao, H.22
Carter, N.P.23
Clelland, G.K.24
Davis, S.25
Day, N.26
Dhami, P.27
Dillon, S.C.28
Dorschner, M.O.29
Fiegler, H.30
Giresi, P.G.31
Goldy, J.32
Hawrylycz, M.33
Haydock, A.34
Humbert, R.35
James, K.D.36
Johnson, B.E.37
Johnson, E.M.38
Frum, T.T.39
Rosenzweig, E.R.40
Karnani, N.41
Lee, K.42
Lefebvre, G.C.43
Navas, P.A.44
Neri, F.45
Parker, S.C.J.46
Sabo, P.J.47
Sandstrom, R.48
Shafer, A.49
Vetrie, D.50
Weaver, M.51
Wilcox, S.52
Yu, M.53
Collins, F.S.54
Dekker, J.55
Lieb, J.D.56
Tullius, T.D.57
Crawford, G.E.58
Sunyaev, S.59
Noble, W.S.60
Dunham, I.61
Denoeud, F.62
Reymond, A.63
Kapranov, P.64
Rozowsky, J.65
Zheng, D.66
Castelo, R.67
Frankish, A.68
Harrow, J.69
Ghosh, S.70
Sandelin, A.71
Hofacker, I.L.72
Baertsch, R.73
Keefe, D.74
Dike, S.75
Cheng, J.76
Hirsch, H.A.77
Sekinger, E.A.78
Lagarde, J.79
Abril, J.F.80
Shahab, A.81
Flamm, C.82
Fried, C.83
Hackermuller, J.84
Hertel, J.85
Lindemeyer, M.86
Missal, K.87
Tanzer, A.88
Washietl, S.89
Korbel, J.90
Emanuelsson, O.91
Pedersen, J.S.92
Holroyd, N.93
Taylor, R.94
Swarbreck, D.95
more..
-
5
-
-
77952449083
-
Phylostratigraphic tracking of cancer genes suggests a link to the emergence of multicellularity in metazoa
-
Domazet-Lošo T, Tautz D. 2010. Phylostratigraphic tracking of cancer genes suggests a link to the emergence of multicellularity in metazoa. BMC Biol. 8:66.
-
(2010)
BMC Biol.
, vol.8
, pp. 66
-
-
Domazet-Lošo, T.1
Tautz, D.2
-
6
-
-
75549089335
-
Ensembl's 10th year
-
Flicek P, et al. 2010. Ensembl's 10th year. Nucleic Acids Res. 38:D557-D562.
-
(2010)
Nucleic Acids Res.
, vol.38
-
-
Flicek, P.1
-
7
-
-
33751381461
-
TimeTree: A public knowledge-base of divergence times among organisms
-
DOI 10.1093/bioinformatics/btl505
-
Hedges SB, Dudley J, Kumar S. 2006. TimeTree: a public knowledgebase of divergence times among organisms. Bioinformatics. 22:2971-2972. (Pubitemid 44811578)
-
(2006)
Bioinformatics
, vol.22
, Issue.23
, pp. 2971-2972
-
-
Hedges, S.B.1
Dudley, J.2
Kumar, S.3
-
8
-
-
0036079158
-
The human genome browser at UCSC
-
Kent WJ, et al. 2002. The human genome browser at UCSC. Genome Res. 12:996-1006.
-
(2002)
Genome Res.
, vol.12
, pp. 996-1006
-
-
Kent, W.J.1
-
9
-
-
77954505224
-
DARNED: A DAtabase of RNa EDiting in humans
-
Kiran A, Baranov PV. 2010. DARNED: a DAtabase of RNa EDiting in humans. Bioinformatics. 26:1772-1776.
-
(2010)
Bioinformatics.
, vol.26
, pp. 1772-1776
-
-
Kiran, A.1
Baranov, P.V.2
-
11
-
-
58149203235
-
The database of experimentally supported targets: A functional update of TarBase
-
Papadopoulos GL, Reczko M, Simossis VA, Sethupathy P, Hatzigeorgiou AG. 2009. The database of experimentally supported targets: a functional update of TarBase. Nucleic Acids Res. 37:D155-D158.
-
(2009)
Nucleic Acids Res.
, vol.37
-
-
Papadopoulos, G.L.1
Reczko, M.2
Simossis, V.A.3
Sethupathy, P.4
Hatzigeorgiou, A.G.5
-
12
-
-
33846990531
-
Splicing and the evolution of proteins in mammals
-
Parmley JL, Urrutia AO, Potrzebowski L, Kaessmann H, Hurst LD. 2007. Splicing and the evolution of proteins in mammals. PLoS Biol. 5:e14.
-
(2007)
PLoS Biol.
, vol.5
-
-
Parmley, J.L.1
Urrutia, A.O.2
Potrzebowski, L.3
Kaessmann, H.4
Hurst, L.D.5
-
13
-
-
79952254962
-
Age-dependent gain of alternative splice forms and biased duplication explain the relation between splicing and duplication
-
Roux J, Robinson-Rechavi M. 2011. Age-dependent gain of alternative splice forms and biased duplication explain the relation between splicing and duplication. Genome Res. 21:357-363.
-
(2011)
Genome Res.
, vol.21
, pp. 357-363
-
-
Roux, J.1
Robinson-Rechavi, M.2
-
14
-
-
23744458086
-
Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes
-
DOI 10.1101/gr.3715005
-
Siepel A, et al. 2005. Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes. Genome Res. 15:1034-1050. (Pubitemid 41126859)
-
(2005)
Genome Research
, vol.15
, Issue.8
, pp. 1034-1050
-
-
Siepel, A.1
Bejerano, G.2
Pedersen, J.S.3
Hinrichs, A.S.4
Hou, M.5
Rosenbloom, K.6
Clawson, H.7
Spieth, J.8
Hillier, L.W.9
Richards, S.10
Weinstock, G.M.11
Wilson, R.K.12
Gibbs, R.A.13
Kent, W.J.14
Miller, W.15
Haussler, D.16
-
16
-
-
66149123308
-
Inaugural article: The universal distribution of evolutionary rates of genes and distinct characteristics of eukaryotic genes of different apparent ages
-
Wolf YI, Novichkov PS, Karev GP, Koonin EV, Lipman DJ. 2009. Inaugural article: the universal distribution of evolutionary rates of genes and distinct characteristics of eukaryotic genes of different apparent ages. Proc Natl Acad Sci U S A. 106:7273-7280.
-
(2009)
Proc Natl Acad Sci U S A
, vol.106
, pp. 7273-7280
-
-
Wolf, Y.I.1
Novichkov, P.S.2
Karev, G.P.3
Koonin, E.V.4
Lipman, D.J.5
|