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Volumn 16, Issue 1, 2015, Pages

Extensive intra-phylotype diversity in lactobacilli and bifidobacteria from the honeybee gut

Author keywords

Bifidobacteria; Comparative genomics; Firmicutes; Lactic acid bacteria; Lactobacillus spp; Niche specialization; Phosphotransferase systems

Indexed keywords

PHOSPHOTRANSFERASE; RNA 16S; BACTERIAL DNA;

EID: 84930640210     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/s12864-015-1476-6     Document Type: Article
Times cited : (110)

References (102)
  • 1
    • 0032436565 scopus 로고    scopus 로고
    • Endangered mutualisms: the concervation of plant-pollinator interactions
    • Kearns CA, Inouye DW, Waser NM. Endangered mutualisms: the concervation of plant-pollinator interactions. Annu Rev Ecol Syst. 1998;29:83-112.
    • (1998) Annu Rev Ecol Syst , vol.29 , pp. 83-112
    • Kearns, C.A.1    Inouye, D.W.2    Waser, N.M.3
  • 3
    • 82355180987 scopus 로고    scopus 로고
    • Bees brought to their knees: microbes affecting honey bee health
    • Evans JD, Schwarz RS. Bees brought to their knees: microbes affecting honey bee health. Trends Microbiol. 2011;19(12):614-20.
    • (2011) Trends Microbiol , vol.19 , Issue.12 , pp. 614-620
    • Evans, J.D.1    Schwarz, R.S.2
  • 5
    • 84872164313 scopus 로고    scopus 로고
    • Long-term exposure to antibiotics has caused accumulation of resistance determinants in the gut microbiota of honeybees
    • Tian B, Fadhil NH, Powell JE, Kwong WK, Moran NA. Long-term exposure to antibiotics has caused accumulation of resistance determinants in the gut microbiota of honeybees. mBio. 2012;3(6):e00377-12.
    • (2012) mBio , vol.3 , Issue.6 , pp. e00377-e003812
    • Tian, B.1    Fadhil, N.H.2    Powell, J.E.3    Kwong, W.K.4    Moran, N.A.5
  • 6
    • 78650647326 scopus 로고    scopus 로고
    • Has the microbiota played a critical role in the evolution of the adaptive immune system?
    • Lee YK, Mazmanian SK. Has the microbiota played a critical role in the evolution of the adaptive immune system? Science. 2010;330(6012):1768-73.
    • (2010) Science , vol.330 , Issue.6012 , pp. 1768-1773
    • Lee, Y.K.1    Mazmanian, S.K.2
  • 7
    • 67349250428 scopus 로고    scopus 로고
    • The gut microbiota shapes intestinal immune responses during health and disease
    • Round JL, Mazmanian SK. The gut microbiota shapes intestinal immune responses during health and disease. Nat Rev Immunol. 2009;9(5):313-23.
    • (2009) Nat Rev Immunol , vol.9 , Issue.5 , pp. 313-323
    • Round, J.L.1    Mazmanian, S.K.2
  • 8
    • 80051856839 scopus 로고    scopus 로고
    • The human gut microbiome: ecology and recent evolutionary changes
    • Walter J, Ley R. The human gut microbiome: ecology and recent evolutionary changes. Annu Rev Microbiol. 2011;65:411-29.
    • (2011) Annu Rev Microbiol , vol.65 , pp. 411-429
    • Walter, J.1    Ley, R.2
  • 9
    • 82755162640 scopus 로고    scopus 로고
    • Socially transmitted gut microbiota protect bumble bees against an intestinal parasite
    • Koch H, Schmid-Hempel P. Socially transmitted gut microbiota protect bumble bees against an intestinal parasite. Proc Natl Acad Sci U S A. 2011;108(48):19288-92.
    • (2011) Proc Natl Acad Sci U S A , vol.108 , Issue.48 , pp. 19288-19292
    • Koch, H.1    Schmid-Hempel, P.2
  • 10
    • 84858050440 scopus 로고    scopus 로고
    • Symbionts as major modulators of insect health: lactic acid bacteria and honeybees
    • Vasquez A, Forsgren E, Fries I, Paxton RJ, Flaberg E, Szekely L, et al. Symbionts as major modulators of insect health: lactic acid bacteria and honeybees. PLoS One. 2012;7(3):e33188.
    • (2012) PLoS One , vol.7 , Issue.3 , pp. e33188
    • Vasquez, A.1    Forsgren, E.2    Fries, I.3    Paxton, R.J.4    Flaberg, E.5    Szekely, L.6
  • 11
    • 73449086690 scopus 로고    scopus 로고
    • Novel lactic acid bacteria inhibiting Paenicillus larvae in honey bee larvae
    • Forsgren E, Olofsson TC, Vasquez A, Fries I. Novel lactic acid bacteria inhibiting Paenicillus larvae in honey bee larvae. Apidologie. 2010;41:99-108.
    • (2010) Apidologie , vol.41 , pp. 99-108
    • Forsgren, E.1    Olofsson, T.C.2    Vasquez, A.3    Fries, I.4
  • 12
    • 33847748265 scopus 로고    scopus 로고
    • Bacterial community structures in honeybee intestines and their response to two insecticidal proteins
    • Babendreier D, Joller D, Romeis J, Bigler F, Widmer F. Bacterial community structures in honeybee intestines and their response to two insecticidal proteins. FEMS Microbiol Ecol. 2007;59(3):600-10.
    • (2007) FEMS Microbiol Ecol , vol.59 , Issue.3 , pp. 600-610
    • Babendreier, D.1    Joller, D.2    Romeis, J.3    Bigler, F.4    Widmer, F.5
  • 13
    • 0345392567 scopus 로고    scopus 로고
    • Bacterial diversity in worker adults of Apis mellifera capensis and Apis mellifera scutellata (Insecta: Hymenoptera) assessed using 16S rRNA sequences
    • Jeyaprakash A, Hoy MA, Allsopp MH. Bacterial diversity in worker adults of Apis mellifera capensis and Apis mellifera scutellata (Insecta: Hymenoptera) assessed using 16S rRNA sequences. J Invertebr Pathol. 2003;84(2):96-103.
    • (2003) J Invertebr Pathol , vol.84 , Issue.2 , pp. 96-103
    • Jeyaprakash, A.1    Hoy, M.A.2    Allsopp, M.H.3
  • 15
    • 84860486227 scopus 로고    scopus 로고
    • Distinctive gut microbiota of honey bees assessed using deep sampling from individual worker bees
    • Moran NA, Hansen AK, Powell JE, Sabree ZL. Distinctive gut microbiota of honey bees assessed using deep sampling from individual worker bees. PLoS One. 2012;7(4):e36393.
    • (2012) PLoS One , vol.7 , Issue.4 , pp. e36393
    • Moran, N.A.1    Hansen, A.K.2    Powell, J.E.3    Sabree, Z.L.4
  • 16
    • 84864058226 scopus 로고    scopus 로고
    • Independent studies using deep sequencing resolve the same set of core bacterial species dominating gut communities of honey bees
    • Sabree ZL, Hansen AK, Moran NA. Independent studies using deep sequencing resolve the same set of core bacterial species dominating gut communities of honey bees. PLoS One. 2012;7(7):e41250.
    • (2012) PLoS One , vol.7 , Issue.7 , pp. e41250
    • Sabree, Z.L.1    Hansen, A.K.2    Moran, N.A.3
  • 17
    • 84868574432 scopus 로고    scopus 로고
    • Pyrosequencing analysis of the bacterial communities in the guts of honey bees Apis cerana and Apis mellifera in Korea
    • Ahn JH, Hong IP, Bok JI, Kim BY, Song J, Weon HY. Pyrosequencing analysis of the bacterial communities in the guts of honey bees Apis cerana and Apis mellifera in Korea. J Microbiol. 2012;50(5):735-45.
    • (2012) J Microbiol , vol.50 , Issue.5 , pp. 735-745
    • Ahn, J.H.1    Hong, I.P.2    Bok, J.I.3    Kim, B.Y.4    Song, J.5    Weon, H.Y.6
  • 18
    • 35748954014 scopus 로고    scopus 로고
    • Prokaryotic taxonomy and phylogeny in the genomic era: advancements and challenges ahead
    • Konstantinidis KT, Tiedje JM. Prokaryotic taxonomy and phylogeny in the genomic era: advancements and challenges ahead. Curr Opin Microbiol. 2007;10(5):504-9.
    • (2007) Curr Opin Microbiol , vol.10 , Issue.5 , pp. 504-509
    • Konstantinidis, K.T.1    Tiedje, J.M.2
  • 20
    • 84907585369 scopus 로고    scopus 로고
    • Hidden diversity in honey bee gut symbionts detected by single-cell genomics
    • Engel P, Stepanauskas R, Moran NA. Hidden diversity in honey bee gut symbionts detected by single-cell genomics. PLoS Genet. 2014;10(9):e1004596.
    • (2014) PLoS Genet , vol.10 , Issue.9 , pp. e1004596
    • Engel, P.1    Stepanauskas, R.2    Moran, N.A.3
  • 21
    • 85005992266 scopus 로고    scopus 로고
    • Genome sequences of lactobacillus sp. Strains wkB8 and wkB10, members of the Firm-5 Clade, from honey bee guts
    • Kwong WK, Mancenido AL, Moran NA. Genome sequences of lactobacillus sp. Strains wkB8 and wkB10, members of the Firm-5 Clade, from honey bee guts. Genome Announc. 2014;2(6):e01176-14.
    • (2014) Genome Announc , vol.2 , Issue.6 , pp. e01176-e01214
    • Kwong, W.K.1    Mancenido, A.L.2    Moran, N.A.3
  • 22
    • 84920181125 scopus 로고    scopus 로고
    • Nectar Chemistry. In: Nectaries and Nectar. Dordrecht: Springer;
    • Nicolson SW, Thornburg RW. Nectar Chemistry. In: Nectaries and Nectar. Dordrecht: Springer; 2007. p. 215-63.
    • (2007) , pp. 215-263
  • 23
    • 84863578700 scopus 로고    scopus 로고
    • Functional diversity within the simple gut microbiota of the honey bee
    • Engel P, Martinson VG, Moran NA. Functional diversity within the simple gut microbiota of the honey bee. Proc Natl Acad Sci U S A. 2012;109(27):11002-7.
    • (2012) Proc Natl Acad Sci U S A , vol.109 , Issue.27 , pp. 11002-11007
    • Engel, P.1    Martinson, V.G.2    Moran, N.A.3
  • 24
    • 0031801913 scopus 로고    scopus 로고
    • Lactobacillus kunkeei sp. nov.: a spoilage organism associated with grape juice fermentations
    • Edwards CG, Haag KM, Collins MD, Hutson RA, Huang YC. Lactobacillus kunkeei sp. nov.: a spoilage organism associated with grape juice fermentations. J Appl Microbiol. 1998;84(5):698-702.
    • (1998) J Appl Microbiol , vol.84 , Issue.5 , pp. 698-702
    • Edwards, C.G.1    Haag, K.M.2    Collins, M.D.3    Hutson, R.A.4    Huang, Y.C.5
  • 25
    • 50249182791 scopus 로고    scopus 로고
    • Detection and identification of a novel lactic acid bacterial flora within the honey stomach of the honeybee Apis mellifera
    • Olofsson TC, Vasquez A. Detection and identification of a novel lactic acid bacterial flora within the honey stomach of the honeybee Apis mellifera. Curr Microbiol. 2008;57(4):356-63.
    • (2008) Curr Microbiol , vol.57 , Issue.4 , pp. 356-363
    • Olofsson, T.C.1    Vasquez, A.2
  • 26
    • 84891372560 scopus 로고    scopus 로고
    • Microbial ecology of the hive and pollination landscape: bacterial associates from floral nectar, the alimentary tract and stored food of honey bees (Apis mellifera)
    • Anderson KE, Sheehan TH, Mott BM, Maes P, Snyder L, Schwan MR, et al. Microbial ecology of the hive and pollination landscape: bacterial associates from floral nectar, the alimentary tract and stored food of honey bees (Apis mellifera). PLoS One. 2013;8(12):e83125.
    • (2013) PLoS One , vol.8 , Issue.12 , pp. e83125
    • Anderson, K.E.1    Sheehan, T.H.2    Mott, B.M.3    Maes, P.4    Snyder, L.5    Schwan, M.R.6
  • 27
    • 60749131160 scopus 로고    scopus 로고
    • A scientific note on the lactic acid bacterial flora in honeybees in the USA - a comparison with bees from Sweden
    • Vasquez A, Olofsson TC, Sammataro D. A scientific note on the lactic acid bacterial flora in honeybees in the USA - a comparison with bees from Sweden. Apidologie. 2009;40:26-8.
    • (2009) Apidologie , vol.40 , pp. 26-28
    • Vasquez, A.1    Olofsson, T.C.2    Sammataro, D.3
  • 28
    • 84856644726 scopus 로고    scopus 로고
    • A scientific note on the lactic acid bacterial flora within the honeybee subspecies Apis mellifera (Buckfast), A.m. Scutellata, A.m. mellifera, and A.m. monticola
    • Olofsson TC, Vasquez A, Sammataro D, Macharia J. A scientific note on the lactic acid bacterial flora within the honeybee subspecies Apis mellifera (Buckfast), A.m. Scutellata, A.m. mellifera, and A.m. monticola. Apidologie. 2011;42(6):696-9.
    • (2011) Apidologie , vol.42 , Issue.6 , pp. 696-699
    • Olofsson, T.C.1    Vasquez, A.2    Sammataro, D.3    Macharia, J.4
  • 29
    • 84886875528 scopus 로고    scopus 로고
    • Proteins of novel lactic acid bacteria from Apis mellifera mellifera: an insight into the production of known extra-cellular proteins during microbial stress
    • Butler E, Alsterfjord M, Olofsson TC, Karlsson C, Malmstrom J, Vasquez A. Proteins of novel lactic acid bacteria from Apis mellifera mellifera: an insight into the production of known extra-cellular proteins during microbial stress. BMC Microbiol. 2013;13(1):235.
    • (2013) BMC Microbiol , vol.13 , Issue.1 , pp. 235
    • Butler, E.1    Alsterfjord, M.2    Olofsson, T.C.3    Karlsson, C.4    Malmstrom, J.5    Vasquez, A.6
  • 30
    • 84907046552 scopus 로고    scopus 로고
    • Lactobacillus apinorum sp. nov., Lactobacillus mellifer sp. nov., Lactobacillus mellis sp. nov., Lactobacillus melliventris sp. nov., Lactobacillus kimbladii sp. nov., Lactobacillus helsingborgensis sp. nov. and Lactobacillus kullabergensis sp. nov., isolated from the honey stomach of the honeybee Apis mellifera
    • Olofsson TC, Alsterfjord M, Nilson B, Butler E, Vasquez A. Lactobacillus apinorum sp. nov., Lactobacillus mellifer sp. nov., Lactobacillus mellis sp. nov., Lactobacillus melliventris sp. nov., Lactobacillus kimbladii sp. nov., Lactobacillus helsingborgensis sp. nov. and Lactobacillus kullabergensis sp. nov., isolated from the honey stomach of the honeybee Apis mellifera. Int J Syst Evol Microbiol. 2014;64(Pt 9):3109-19.
    • (2014) Int J Syst Evol Microbiol , vol.64 , pp. 3109-3119
    • Olofsson, T.C.1    Alsterfjord, M.2    Nilson, B.3    Butler, E.4    Vasquez, A.5
  • 32
    • 84866673240 scopus 로고    scopus 로고
    • Bifidobacterium asteroides PRL2011 genome analysis reveals clues for colonization of the insect gut
    • Bottacini F, Milani C, Turroni F, Sanchez B, Foroni E, Duranti S, et al. Bifidobacterium asteroides PRL2011 genome analysis reveals clues for colonization of the insect gut. PLoS One. 2012;7(9):e44229.
    • (2012) PLoS One , vol.7 , Issue.9 , pp. e44229
    • Bottacini, F.1    Milani, C.2    Turroni, F.3    Sanchez, B.4    Foroni, E.5    Duranti, S.6
  • 33
    • 77958014175 scopus 로고    scopus 로고
    • Genomic insights into bifidobacteria
    • Lee JH, O'Sullivan DJ. Genomic insights into bifidobacteria. Microbiol Mol Biol Rev. 2010;74(3):378-416.
    • (2010) Microbiol Mol Biol Rev , vol.74 , Issue.3 , pp. 378-416
    • Lee, J.H.1    O'Sullivan, D.J.2
  • 35
    • 84899733474 scopus 로고    scopus 로고
    • The bacterial communities associated with honey bee (Apis mellifera) foragers
    • Corby-Harris V, Maes P, Anderson KE. The bacterial communities associated with honey bee (Apis mellifera) foragers. PLoS One. 2014;9(4):e95056.
    • (2014) PLoS One , vol.9 , Issue.4 , pp. e95056
    • Corby-Harris, V.1    Maes, P.2    Anderson, K.E.3
  • 36
    • 84860523799 scopus 로고    scopus 로고
    • Phylogenetic framework and molecular signatures for the main clades of the phylum Actinobacteria
    • Gao B, Gupta RS. Phylogenetic framework and molecular signatures for the main clades of the phylum Actinobacteria. Microbiol Mol Biol Rev. 2012;76(1):66-112.
    • (2012) Microbiol Mol Biol Rev , vol.76 , Issue.1 , pp. 66-112
    • Gao, B.1    Gupta, R.S.2
  • 37
    • 0014636059 scopus 로고
    • New species of bifid bacteria from Apis mellifica L. and Apis indica F. A contribution to the taxonomy and biochemistry of the genus Bifidobacterium
    • Scardovi V, Trovatelli LD. New species of bifid bacteria from Apis mellifica L. and Apis indica F. A contribution to the taxonomy and biochemistry of the genus Bifidobacterium. Zentralbl Bakteriol Parasitenkd Infektionskr Hyg. 1969;123(1):64-88.
    • (1969) Zentralbl Bakteriol Parasitenkd Infektionskr Hyg , vol.123 , Issue.1 , pp. 64-88
    • Scardovi, V.1    Trovatelli, L.D.2
  • 39
    • 0038056150 scopus 로고    scopus 로고
    • New insights on trehalose: a multifunctional molecule
    • Elbein AD, Pan YT, Pastuszak I, Carroll D. New insights on trehalose: a multifunctional molecule. Glycobiology. 2003;13(4):17R-27.
    • (2003) Glycobiology , vol.13 , Issue.4 , pp. 17R-27
    • Elbein, A.D.1    Pan, Y.T.2    Pastuszak, I.3    Carroll, D.4
  • 40
    • 84884281618 scopus 로고    scopus 로고
    • A functional glycogen biosynthesis pathway in Lactobacillus acidophilus: expression and analysis of the glg operon
    • Goh YJ, Klaenhammer TR. A functional glycogen biosynthesis pathway in Lactobacillus acidophilus: expression and analysis of the glg operon. Mol Microbiol. 2013;89(6):1187-200.
    • (2013) Mol Microbiol , vol.89 , Issue.6 , pp. 1187-1200
    • Goh, Y.J.1    Klaenhammer, T.R.2
  • 41
    • 84858222518 scopus 로고    scopus 로고
    • Protein secretion and surface display in Gram-positive bacteria
    • Schneewind O, Missiakas DM. Protein secretion and surface display in Gram-positive bacteria. Philos Trans R Soc Lond B Biol Sci. 2012;367(1592):1123-39.
    • (2012) Philos Trans R Soc Lond B Biol Sci , vol.367 , Issue.1592 , pp. 1123-1139
    • Schneewind, O.1    Missiakas, D.M.2
  • 42
    • 84863711744 scopus 로고    scopus 로고
    • Identification of a high-molecular-mass Lactobacillus epithelium adhesin (LEA) of Lactobacillus crispatus ST1 that binds to stratified squamous epithelium
    • Edelman SM, Lehti TA, Kainulainen V, Antikainen J, Kylvaja R, Baumann M, et al. Identification of a high-molecular-mass Lactobacillus epithelium adhesin (LEA) of Lactobacillus crispatus ST1 that binds to stratified squamous epithelium. Microbiology. 2012;158(Pt 7):1713-22.
    • (2012) Microbiology , vol.158 , pp. 1713-1722
    • Edelman, S.M.1    Lehti, T.A.2    Kainulainen, V.3    Antikainen, J.4    Kylvaja, R.5    Baumann, M.6
  • 43
    • 29144442497 scopus 로고    scopus 로고
    • Functional analysis of putative adhesion factors in Lactobacillus acidophilus NCFM
    • Buck BL, Altermann E, Svingerud T, Klaenhammer TR. Functional analysis of putative adhesion factors in Lactobacillus acidophilus NCFM. Appl Environ Microbiol. 2005;71(12):8344-51.
    • (2005) Appl Environ Microbiol , vol.71 , Issue.12 , pp. 8344-8351
    • Buck, B.L.1    Altermann, E.2    Svingerud, T.3    Klaenhammer, T.R.4
  • 44
    • 13544263246 scopus 로고    scopus 로고
    • A high-molecular-mass surface protein (Lsp) and methionine sulfoxide reductase B (MsrB) contribute to the ecological performance of Lactobacillus reuteri in the murine gut
    • Walter J, Chagnaud P, Tannock GW, Loach DM, Dal Bello F, Jenkinson HF, et al. A high-molecular-mass surface protein (Lsp) and methionine sulfoxide reductase B (MsrB) contribute to the ecological performance of Lactobacillus reuteri in the murine gut. Appl Environ Microbiol. 2005;71(2):979-86.
    • (2005) Appl Environ Microbiol , vol.71 , Issue.2 , pp. 979-986
    • Walter, J.1    Chagnaud, P.2    Tannock, G.W.3    Loach, D.M.4    Dal Bello, F.5    Jenkinson, H.F.6
  • 45
    • 0036181685 scopus 로고    scopus 로고
    • A high-molecular-mass cell-surface protein from Lactobacillus reuteri 1063 adheres to mucus components
    • Roos S, Jonsson H. A high-molecular-mass cell-surface protein from Lactobacillus reuteri 1063 adheres to mucus components. Microbiology. 2002;148(Pt 2):433-42.
    • (2002) Microbiology , vol.148 , pp. 433-442
    • Roos, S.1    Jonsson, H.2
  • 46
    • 84878716049 scopus 로고    scopus 로고
    • Lactobacillus surface layer proteins: structure, function and applications
    • Hynonen U, Palva A. Lactobacillus surface layer proteins: structure, function and applications. Appl Microbiol Biotechnol. 2013;97(12):5225-43.
    • (2013) Appl Microbiol Biotechnol , vol.97 , Issue.12 , pp. 5225-5243
    • Hynonen, U.1    Palva, A.2
  • 47
    • 84874105332 scopus 로고    scopus 로고
    • Characterization of a S-layer protein from Lactobacillus crispatus K313 and the domains responsible for binding to cell wall and adherence to collagen
    • Sun Z, Kong J, Hu S, Kong W, Lu W, Liu W. Characterization of a S-layer protein from Lactobacillus crispatus K313 and the domains responsible for binding to cell wall and adherence to collagen. Appl Microbiol Biotechnol. 2013;97(5):1941-52.
    • (2013) Appl Microbiol Biotechnol , vol.97 , Issue.5 , pp. 1941-1952
    • Sun, Z.1    Kong, J.2    Hu, S.3    Kong, W.4    Lu, W.5    Liu, W.6
  • 48
    • 0035847002 scopus 로고    scopus 로고
    • The S-layer protein of Lactobacillus acidophilus ATCC 4356: identification and characterisation of domains responsible for S-protein assembly and cell wall binding
    • Smit E, Oling F, Demel R, Martinez B, Pouwels PH. The S-layer protein of Lactobacillus acidophilus ATCC 4356: identification and characterisation of domains responsible for S-protein assembly and cell wall binding. J Mol Biol. 2001;305(2):245-57.
    • (2001) J Mol Biol , vol.305 , Issue.2 , pp. 245-257
    • Smit, E.1    Oling, F.2    Demel, R.3    Martinez, B.4    Pouwels, P.H.5
  • 49
    • 0036430117 scopus 로고    scopus 로고
    • Domains in the S-layer protein CbsA of Lactobacillus crispatus involved in adherence to collagens, laminin and lipoteichoic acids and in self-assembly
    • Antikainen J, Anton L, Sillanpaa J, Korhonen TK. Domains in the S-layer protein CbsA of Lactobacillus crispatus involved in adherence to collagens, laminin and lipoteichoic acids and in self-assembly. Mol Microbiol. 2002;46(2):381-94.
    • (2002) Mol Microbiol , vol.46 , Issue.2 , pp. 381-394
    • Antikainen, J.1    Anton, L.2    Sillanpaa, J.3    Korhonen, T.K.4
  • 50
    • 80054970863 scopus 로고    scopus 로고
    • Heterologous protein display on the cell surface of lactic acid bacteria mediated by the s-layer protein
    • Hu S, Kong J, Sun Z, Han L, Kong W, Yang P. Heterologous protein display on the cell surface of lactic acid bacteria mediated by the s-layer protein. Microb Cell Fact. 2011;10:86.
    • (2011) Microb Cell Fact , vol.10 , pp. 86
    • Hu, S.1    Kong, J.2    Sun, Z.3    Han, L.4    Kong, W.5    Yang, P.6
  • 52
    • 33747012649 scopus 로고    scopus 로고
    • Lactobacillus plantarum gene clusters encoding putative cell-surface protein complexes for carbohydrate utilization are conserved in specific gram-positive bacteria
    • Siezen R, Boekhorst J, Muscariello L, Molenaar D, Renckens B, Kleerebezem M. Lactobacillus plantarum gene clusters encoding putative cell-surface protein complexes for carbohydrate utilization are conserved in specific gram-positive bacteria. BMC Genomics. 2006;7:126.
    • (2006) BMC Genomics , vol.7 , pp. 126
    • Siezen, R.1    Boekhorst, J.2    Muscariello, L.3    Molenaar, D.4    Renckens, B.5    Kleerebezem, M.6
  • 53
    • 33846926952 scopus 로고    scopus 로고
    • C-terminal WxL domain mediates cell wall binding in Enterococcus faecalis and other gram-positive bacteria
    • Brinster S, Furlan S, Serror P. C-terminal WxL domain mediates cell wall binding in Enterococcus faecalis and other gram-positive bacteria. J Bacteriol. 2007;189(4):1244-53.
    • (2007) J Bacteriol , vol.189 , Issue.4 , pp. 1244-1253
    • Brinster, S.1    Furlan, S.2    Serror, P.3
  • 54
    • 10444229687 scopus 로고    scopus 로고
    • Characterization of Lactobacillus coryniformis DSM 20001 T surface protein Cpf mediating coaggregation with and aggregation among pathogens
    • Schachtsiek M, Hammes WP, Hertel C. Characterization of Lactobacillus coryniformis DSM 20001 T surface protein Cpf mediating coaggregation with and aggregation among pathogens. Appl Environ Microbiol. 2004;70(12):7078-85.
    • (2004) Appl Environ Microbiol , vol.70 , Issue.12 , pp. 7078-7085
    • Schachtsiek, M.1    Hammes, W.P.2    Hertel, C.3
  • 57
    • 1342304164 scopus 로고    scopus 로고
    • Identification and functional characterization of the Lactococcus lactis rfb operon, required for dTDP-rhamnose Biosynthesis
    • Boels IC, Beerthuyzen MM, Kosters MH, Van Kaauwen MP, Kleerebezem M, De Vos WM. Identification and functional characterization of the Lactococcus lactis rfb operon, required for dTDP-rhamnose Biosynthesis. J Bacteriol. 2004;186(5):1239-48.
    • (2004) J Bacteriol , vol.186 , Issue.5 , pp. 1239-1248
    • Boels, I.C.1    Beerthuyzen, M.M.2    Kosters, M.H.3    Kaauwen, M.P.4    Kleerebezem, M.5    Vos, W.M.6
  • 59
    • 0030943594 scopus 로고    scopus 로고
    • Molecular characterization of the plasmid-encoded eps gene cluster essential for exopolysaccharide biosynthesis in Lactococcus lactis
    • Van Kranenburg R, Marugg JD, Van II S, Willem NJ, De Vos WM. Molecular characterization of the plasmid-encoded eps gene cluster essential for exopolysaccharide biosynthesis in Lactococcus lactis. Mol Microbiol. 1997;24(2):387-97.
    • (1997) Mol Microbiol , vol.24 , Issue.2 , pp. 387-397
    • Kranenburg, R.1    Marugg, J.D.2    Van, S.3    Willem, N.J.4    Vos, W.M.5
  • 60
    • 0038392792 scopus 로고    scopus 로고
    • Exopolysaccharides from lactic acid bacteria: perspectives and challenges
    • Welman AD, Maddox IS. Exopolysaccharides from lactic acid bacteria: perspectives and challenges. Trends Biotechnol. 2003;21(6):269-74.
    • (2003) Trends Biotechnol , vol.21 , Issue.6 , pp. 269-274
    • Welman, A.D.1    Maddox, I.S.2
  • 61
    • 84878936806 scopus 로고    scopus 로고
    • CRISPR-mediated adaptive immune systems in bacteria and archaea
    • Sorek R, Lawrence CM, Wiedenheft B. CRISPR-mediated adaptive immune systems in bacteria and archaea. Annu Rev Biochem. 2013;82:237-66.
    • (2013) Annu Rev Biochem , vol.82 , pp. 237-266
    • Sorek, R.1    Lawrence, C.M.2    Wiedenheft, B.3
  • 62
    • 34547588704 scopus 로고    scopus 로고
    • KAAS: an automatic genome annotation and pathway reconstruction server
    • Web Server issue
    • Moriya Y, Itoh M, Okuda S, Yoshizawa AC, Kanehisa M. KAAS: an automatic genome annotation and pathway reconstruction server. Nucleic Acids Res. 2007;35(Web Server issue):W182-5.
    • (2007) Nucleic Acids Res , vol.35 , pp. W182-W185
    • Moriya, Y.1    Itoh, M.2    Okuda, S.3    Yoshizawa, A.C.4    Kanehisa, M.5
  • 64
    • 79952266302 scopus 로고    scopus 로고
    • The evolution of host specialization in the vertebrate gut symbiont Lactobacillus reuteri
    • Frese SA, Benson AK, Tannock GW, Loach DM, Kim J, Zhang M, et al. The evolution of host specialization in the vertebrate gut symbiont Lactobacillus reuteri. PLoS Genet. 2011;7(2):e1001314.
    • (2011) PLoS Genet , vol.7 , Issue.2 , pp. e1001314
    • Frese, S.A.1    Benson, A.K.2    Tannock, G.W.3    Loach, D.M.4    Kim, J.5    Zhang, M.6
  • 66
    • 0017726241 scopus 로고
    • Some carbohydrates found in pollen and pollen substitutes are toxic to honey bees
    • Barker RJ. Some carbohydrates found in pollen and pollen substitutes are toxic to honey bees. J Nutr. 1977;107(10):1859-62.
    • (1977) J Nutr , vol.107 , Issue.10 , pp. 1859-1862
    • Barker, R.J.1
  • 67
    • 0000480005 scopus 로고
    • Enzymatic basis of mannose toxicity in honey bees
    • Sols A, Cadenas E, Alvarado F. Enzymatic basis of mannose toxicity in honey bees. Science. 1960;131(3396):297-8.
    • (1960) Science , vol.131 , Issue.3396 , pp. 297-298
    • Sols, A.1    Cadenas, E.2    Alvarado, F.3
  • 68
    • 0035745784 scopus 로고    scopus 로고
    • Haemolymph sugar levels in foraging honeybees (Apis mellifera carnica): dependence on metabolic rate and in vivo measurement of maximal rates of trehalose synthesis
    • Blatt J, Roces F. Haemolymph sugar levels in foraging honeybees (Apis mellifera carnica): dependence on metabolic rate and in vivo measurement of maximal rates of trehalose synthesis. J Exp Biol. 2001;204(Pt 15):2709-16.
    • (2001) J Exp Biol , vol.204 , pp. 2709-2716
    • Blatt, J.1    Roces, F.2
  • 69
    • 29144518548 scopus 로고    scopus 로고
    • Comparative genomic analyses of the bacterial phosphotransferase system
    • Barabote RD, Saier Jr MH. Comparative genomic analyses of the bacterial phosphotransferase system. Microbiol Mol Biol Rev. 2005;69(4):608-34.
    • (2005) Microbiol Mol Biol Rev , vol.69 , Issue.4 , pp. 608-634
    • Barabote, R.D.1    Saier, M.H.2
  • 70
    • 25444460553 scopus 로고    scopus 로고
    • Horizontal gene transfer in the molecular evolution of mannose PTS transporters
    • Zuniga M, Comas I, Linaje R, Monedero V, Yebra MJ, Esteban CD, et al. Horizontal gene transfer in the molecular evolution of mannose PTS transporters. Mol Biol Evol. 2005;22(8):1673-85.
    • (2005) Mol Biol Evol , vol.22 , Issue.8 , pp. 1673-1685
    • Zuniga, M.1    Comas, I.2    Linaje, R.3    Monedero, V.4    Yebra, M.J.5    Esteban, C.D.6
  • 71
    • 84878469861 scopus 로고    scopus 로고
    • Catabolic flexibility of mammalian-associated lactobacilli
    • O'Donnell MM, O'Toole PW, Ross RP. Catabolic flexibility of mammalian-associated lactobacilli. Microb Cell Fact. 2013;12:48.
    • (2013) Microb Cell Fact , vol.12 , pp. 48
    • O'Donnell, M.M.1    O'Toole, P.W.2    Ross, R.P.3
  • 72
    • 0035702148 scopus 로고    scopus 로고
    • Bacterial phosphotransferase system (PTS) in carbohydrate uptake and control of carbon metabolism
    • Kotrba P, Inui M, Yukawa H. Bacterial phosphotransferase system (PTS) in carbohydrate uptake and control of carbon metabolism. J Biosci Bioeng. 2001;92(6):502-17.
    • (2001) J Biosci Bioeng , vol.92 , Issue.6 , pp. 502-517
    • Kotrba, P.1    Inui, M.2    Yukawa, H.3
  • 73
    • 84857128238 scopus 로고    scopus 로고
    • Bifidobacterial surface-exopolysaccharide facilitates commensal-host interaction through immune modulation and pathogen protection
    • Fanning S, Hall LJ, Cronin M, Zomer A, MacSharry J, Goulding D, et al. Bifidobacterial surface-exopolysaccharide facilitates commensal-host interaction through immune modulation and pathogen protection. Proc Natl Acad Sci U S A. 2012;109(6):2108-13.
    • (2012) Proc Natl Acad Sci U S A , vol.109 , Issue.6 , pp. 2108-2113
    • Fanning, S.1    Hall, L.J.2    Cronin, M.3    Zomer, A.4    MacSharry, J.5    Goulding, D.6
  • 74
    • 79954425762 scopus 로고    scopus 로고
    • Biofilm formation and dispersal in Gram-positive bacteria
    • Abee T, Kovacs AT, Kuipers OP, van der Veen S. Biofilm formation and dispersal in Gram-positive bacteria. Curr Opin Biotechnol. 2011;22(2):172-9.
    • (2011) Curr Opin Biotechnol , vol.22 , Issue.2 , pp. 172-179
    • Abee, T.1    Kovacs, A.T.2    Kuipers, O.P.3    Veen, S.4
  • 75
    • 84864416657 scopus 로고    scopus 로고
    • Multi-species biofilms: living with friendly neighbors
    • Elias S, Banin E. Multi-species biofilms: living with friendly neighbors. FEMS Microbiol Rev. 2012;36(5):990-1004.
    • (2012) FEMS Microbiol Rev , vol.36 , Issue.5 , pp. 990-1004
    • Elias, S.1    Banin, E.2
  • 76
    • 84884381841 scopus 로고    scopus 로고
    • Population genetics of Lactobacillus sakei reveals three lineages with distinct evolutionary histories
    • Chaillou S, Lucquin I, Najjari A, Zagorec M, Champomier-Verges MC. Population genetics of Lactobacillus sakei reveals three lineages with distinct evolutionary histories. PLoS One. 2013;8(9):e73253.
    • (2013) PLoS One , vol.8 , Issue.9 , pp. e73253
    • Chaillou, S.1    Lucquin, I.2    Najjari, A.3    Zagorec, M.4    Champomier-Verges, M.C.5
  • 79
    • 84864483625 scopus 로고    scopus 로고
    • RobiNA: a user-friendly, integrated software solution for RNA-Seq-based transcriptomics
    • Web Server issue
    • Lohse M, Bolger AM, Nagel A, Fernie AR, Lunn JE, Stitt M, et al. RobiNA: a user-friendly, integrated software solution for RNA-Seq-based transcriptomics. Nucleic Acids Res. 2012;40(Web Server issue):W622-7.
    • (2012) Nucleic Acids Res , vol.40 , pp. W622-W627
    • Lohse, M.1    Bolger, A.M.2    Nagel, A.3    Fernie, A.R.4    Lunn, J.E.5    Stitt, M.6
  • 80
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler transform
    • Li H, Durbin R. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics. 2009;25(14):1754-60.
    • (2009) Bioinformatics , vol.25 , Issue.14 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 81
    • 68549104404 scopus 로고    scopus 로고
    • Genome Project Data Processing S: the sequence alignment/map format and SAMtools
    • Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, et al. Genome Project Data Processing S: the sequence alignment/map format and SAMtools. Bioinformatics. 2009;25(16):2078-9.
    • (2009) Bioinformatics , vol.25 , Issue.16 , pp. 2078-2079
    • Li, H.1    Handsaker, B.2    Wysoker, A.3    Fennell, T.4    Ruan, J.5    Homer, N.6
  • 82
    • 84930620536 scopus 로고    scopus 로고
    • R: a language and environment for statistical computing
    • R Core Team. R: a language and environment for statistical computing. 2013.
    • (2013)
  • 84
    • 0031955116 scopus 로고    scopus 로고
    • Consed: a graphical tool for sequence finishing
    • Gordon D, Abajian C, Green P. Consed: a graphical tool for sequence finishing. Genome Res. 1998;8(3):195-202.
    • (1998) Genome Res , vol.8 , Issue.3 , pp. 195-202
    • Gordon, D.1    Abajian, C.2    Green, P.3
  • 85
    • 63549147824 scopus 로고    scopus 로고
    • DIYA: a bacterial annotation pipeline for any genomics lab
    • Stewart AC, Osborne B, Read TD. DIYA: a bacterial annotation pipeline for any genomics lab. Bioinformatics. 2009;25(7):962-3.
    • (2009) Bioinformatics , vol.25 , Issue.7 , pp. 962-963
    • Stewart, A.C.1    Osborne, B.2    Read, T.D.3
  • 87
    • 0030854739 scopus 로고    scopus 로고
    • tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence
    • Lowe TM, Eddy SR. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res. 1997;25(5):955-64.
    • (1997) Nucleic Acids Res , vol.25 , Issue.5 , pp. 955-964
    • Lowe, T.M.1    Eddy, S.R.2
  • 91
    • 0033956060 scopus 로고    scopus 로고
    • The COG database: a tool for genome-scale analysis of protein functions and evolution
    • Tatusov RL, Galperin MY, Natale DA, Koonin EV. The COG database: a tool for genome-scale analysis of protein functions and evolution. Nucleic Acids Res. 2000;28(1):33-6.
    • (2000) Nucleic Acids Res , vol.28 , Issue.1 , pp. 33-36
    • Tatusov, R.L.1    Galperin, M.Y.2    Natale, D.A.3    Koonin, E.V.4
  • 92
    • 33749431828 scopus 로고    scopus 로고
    • Prophage Finder: a prophage loci prediction tool for prokaryotic genome sequences
    • Bose M, Barber RD. Prophage Finder: a prophage loci prediction tool for prokaryotic genome sequences. In Silico Biol. 2006;6(3):223-7.
    • (2006) In Silico Biol , vol.6 , Issue.3 , pp. 223-227
    • Bose, M.1    Barber, R.D.2
  • 93
    • 0141519279 scopus 로고    scopus 로고
    • OrthoMCL: identification of ortholog groups for eukaryotic genomes
    • Li L, Stoeckert Jr CJ, Roos DS. OrthoMCL: identification of ortholog groups for eukaryotic genomes. Genome Res. 2003;13(9):2178-89.
    • (2003) Genome Res , vol.13 , Issue.9 , pp. 2178-2189
    • Li, L.1    Stoeckert, C.J.2    Roos, D.S.3
  • 94
    • 0037100671 scopus 로고    scopus 로고
    • MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform
    • Katoh K, Misawa K, Kuma K, Miyata T. MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Res. 2002;30(14):3059-66.
    • (2002) Nucleic Acids Res , vol.30 , Issue.14 , pp. 3059-3066
    • Katoh, K.1    Misawa, K.2    Kuma, K.3    Miyata, T.4
  • 95
    • 33750403801 scopus 로고    scopus 로고
    • RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
    • Stamatakis A. RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics. 2006;22(21):2688-90.
    • (2006) Bioinformatics , vol.22 , Issue.21 , pp. 2688-2690
    • Stamatakis, A.1
  • 96
    • 77954209892 scopus 로고    scopus 로고
    • The Newick utilities: high-throughput phylogenetic tree processing in the UNIX shell
    • Junier T, Zdobnov EM. The Newick utilities: high-throughput phylogenetic tree processing in the UNIX shell. Bioinformatics. 2010;26(13):1669-70.
    • (2010) Bioinformatics , vol.26 , Issue.13 , pp. 1669-1670
    • Junier, T.1    Zdobnov, E.M.2
  • 97
    • 33646167864 scopus 로고    scopus 로고
    • A simple and robust statistical test for detecting the presence of recombination
    • Bruen TC, Philippe H, Bryant D. A simple and robust statistical test for detecting the presence of recombination. Genetics. 2006;172(4):2665-81.
    • (2006) Genetics , vol.172 , Issue.4 , pp. 2665-2681
    • Bruen, T.C.1    Philippe, H.2    Bryant, D.3
  • 98
    • 34249027580 scopus 로고    scopus 로고
    • Inference of bacterial microevolution using multilocus sequence data
    • Didelot X, Falush D. Inference of bacterial microevolution using multilocus sequence data. Genetics. 2007;175(3):1251-66.
    • (2007) Genetics , vol.175 , Issue.3 , pp. 1251-1266
    • Didelot, X.1    Falush, D.2
  • 99
    • 35448962013 scopus 로고    scopus 로고
    • Multilocus sequence typing of Lactobacillus casei reveals a clonal population structure with low levels of homologous recombination
    • Diancourt L, Passet V, Chervaux C, Garault P, Smokvina T, Brisse S. Multilocus sequence typing of Lactobacillus casei reveals a clonal population structure with low levels of homologous recombination. Appl Environ Microbiol. 2007;73(20):6601-11.
    • (2007) Appl Environ Microbiol , vol.73 , Issue.20 , pp. 6601-6611
    • Diancourt, L.1    Passet, V.2    Chervaux, C.3    Garault, P.4    Smokvina, T.5    Brisse, S.6
  • 100
    • 34547579396 scopus 로고    scopus 로고
    • CRISPRFinder: a web tool to identify clustered regularly interspaced short palindromic repeats
    • Web Server issue
    • Grissa I, Vergnaud G, Pourcel C. CRISPRFinder: a web tool to identify clustered regularly interspaced short palindromic repeats. Nucleic Acids Res. 2007;35(Web Server issue):W52-7.
    • (2007) Nucleic Acids Res , vol.35 , pp. W52-W57
    • Grissa, I.1    Vergnaud, G.2    Pourcel, C.3
  • 102
    • 77956519355 scopus 로고    scopus 로고
    • genoPlotR: comparative gene and genome visualization in R
    • Guy L, Kultima JR, Andersson SG. genoPlotR: comparative gene and genome visualization in R. Bioinformatics. 2010;26(18):2334-5.
    • (2010) Bioinformatics , vol.26 , Issue.18 , pp. 2334-2335
    • Guy, L.1    Kultima, J.R.2    Andersson, S.G.3


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