메뉴 건너뛰기




Volumn 172, Issue 4, 2006, Pages 2665-2681

A simple and robust statistical test for detecting the presence of recombination

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID SUBSTITUTION; ARTICLE; CORRELATION ANALYSIS; GENE LINKAGE DISEQUILIBRIUM; GENETIC ANALYSIS; GENETIC MODEL; GENETIC RECOMBINATION; GENOTYPE; MOLECULAR EVOLUTION; MOLECULAR PHYLOGENY; MUTATION RATE; MUTATIONAL ANALYSIS; NONPARAMETRIC TEST; POPULATION GENETICS; POPULATION GROWTH; PRIORITY JOURNAL; SIMULATION; STATISTICS;

EID: 33646167864     PISSN: 00166731     EISSN: 00166731     Source Type: Journal    
DOI: 10.1534/genetics.105.048975     Document Type: Article
Times cited : (1090)

References (82)
  • 1
    • 0035156156 scopus 로고    scopus 로고
    • Infrequent genetic exchange and recombination in the mitochondrial genome of Candida albicans
    • ANDERSON, J. B., C. WICKENS, M. KHAN, L. E. COWEN, N. FEDERSPIEL et al., 2001 Infrequent genetic exchange and recombination in the mitochondrial genome of Candida albicans. J. Bacteriol. 183(3): 865-872.
    • (2001) J. Bacteriol. , vol.183 , Issue.3 , pp. 865-872
    • Anderson, J.B.1    Wickens, C.2    Khan, M.3    Cowen, L.E.4    Federspiel, N.5
  • 2
    • 0037223888 scopus 로고    scopus 로고
    • The evolutionary genomics of pathogen recombination
    • AWADALLA, P., 2003 The evolutionary genomics of pathogen recombination. Nat. Rev. Genet. 4(1): 50-60.
    • (2003) Nat. Rev. Genet. , vol.4 , Issue.1 , pp. 50-60
    • Awadalla, P.1
  • 3
    • 0033601201 scopus 로고    scopus 로고
    • Linkage disequilibrium and recombination in hominid mitochondrial DNA
    • AWADALLA, P., A. EYRE-WALKER and J. M. SMITH, 1999 Linkage disequilibrium and recombination in hominid mitochondrial DNA. Science 286(5449): 2524-2525.
    • (1999) Science , vol.286 , Issue.5449 , pp. 2524-2525
    • Awadalla, P.1    Eyre-Walker, A.2    Smith, J.M.3
  • 4
    • 0034930923 scopus 로고    scopus 로고
    • The power to detect recombination using the coalescent
    • BROWN, C. J., E. C. GARNER, A. KEITH DUNKER and P. JOYCE, 2001 The power to detect recombination using the coalescent. Mol. Biol. Evol. 18(7): 1421-1424.
    • (2001) Mol. Biol. Evol. , vol.18 , Issue.7 , pp. 1421-1424
    • Brown, C.J.1    Garner, E.C.2    Keith Dunker, A.3    Joyce, P.4
  • 5
    • 34547426554 scopus 로고    scopus 로고
    • A subdivision approach to maximum parsimony
    • in press
    • BRUEN, T., and D. BRYANT, 2006 A subdivision approach to maximum parsimony. Ann. Combinator. (in press).
    • (2006) Ann. Combinator.
    • Bruen, T.1    Bryant, D.2
  • 6
    • 0000116740 scopus 로고
    • A method for deducing branching sequences in phylogeny
    • CAMIN, J. H., and R. R. SOKAL, 1965 A method for deducing branching sequences in phylogeny. Evolution 19(3): 311-326.
    • (1965) Evolution , vol.19 , Issue.3 , pp. 311-326
    • Camin, J.H.1    Sokal, R.R.2
  • 8
    • 0000091731 scopus 로고    scopus 로고
    • Statistical approaches to detecting recombination
    • edited by K. A. Crandall. Johns Hopkins University Press, Baltimore
    • CRANDALL, K. A., and A. R. TEMPLETON, 1999 Statistical approaches to detecting recombination, pp. 153-176 in The Evolution of HIV, edited by K. A. Crandall. Johns Hopkins University Press, Baltimore.
    • (1999) The Evolution of HIV , pp. 153-176
    • Crandall, K.A.1    Templeton, A.R.2
  • 9
    • 0032826401 scopus 로고    scopus 로고
    • Detecting and characterizing gene conversions between multigene family members
    • DROUIN, G., F. PRAT, M. ELL and G. D. CLARKE, 1999 Detecting and characterizing gene conversions between multigene family members. Mol. Biol. Evol. 16(10): 1369-1390.
    • (1999) Mol. Biol. Evol. , vol.16 , Issue.10 , pp. 1369-1390
    • Drouin, G.1    Prat, F.2    Ell, M.3    Clarke, G.D.4
  • 10
    • 0035675042 scopus 로고    scopus 로고
    • Estimating recombination rates from population genetic data
    • FEARNHEAD, P., and P. DONNELLY, 2001 Estimating recombination rates from population genetic data. Genetics 159: 1299-1318.
    • (2001) Genetics , vol.159 , pp. 1299-1318
    • Fearnhead, P.1    Donnelly, P.2
  • 12
    • 0031041347 scopus 로고    scopus 로고
    • A likelihood method for the detection of selection and recombination using nucleotide sequences
    • GRASSLY, N. C., and E. C. HOLMES, 1997 A likelihood method for the detection of selection and recombination using nucleotide sequences. Mol. Biol. Evol. 14(3): 239-247.
    • (1997) Mol. Biol. Evol. , vol.14 , Issue.3 , pp. 239-247
    • Grassly, N.C.1    Holmes, E.C.2
  • 13
    • 0032912338 scopus 로고    scopus 로고
    • Population dynamics of HIV-1 inferred from gene sequences
    • GRASSLY, N. C., P. H. HARVEY and E. C. HOLMES, 1999 Population dynamics of HIV-1 inferred from gene sequences. Genetics 151: 427-438.
    • (1999) Genetics , vol.151 , pp. 427-438
    • Grassly, N.C.1    Harvey, P.H.2    Holmes, E.C.3
  • 14
    • 0030498194 scopus 로고    scopus 로고
    • Ancestral inference from samples of DNA sequences with recombination
    • GRIFFITHS, R. C., and P. MARJORAM, 1996 Ancestral inference from samples of DNA sequences with recombination. J. Comput. Biol. 3(4): 479-502.
    • (1996) J. Comput. Biol. , vol.3 , Issue.4 , pp. 479-502
    • Griffiths, R.C.1    Marjoram, P.2
  • 15
    • 0001301442 scopus 로고    scopus 로고
    • The age of a mutation in a general coalescent tree
    • GRIFFITHS, R. C., and S. TAVARÉ, 1998 The age of a mutation in a general coalescent tree. Stoch. Models 14: 273-295.
    • (1998) Stoch. Models , vol.14 , pp. 273-295
    • Griffiths, R.C.1    Tavaré, S.2
  • 16
    • 0036263045 scopus 로고    scopus 로고
    • Sequence variation and haplotype structure surrounding the flowering time locus FRI in Arabidopsis thaliana
    • HAGENBLAD, J., and M. NORDBORG, 2002 Sequence variation and haplotype structure surrounding the flowering time locus FRI in Arabidopsis thaliana. Genetics 161: 289-298.
    • (2002) Genetics , vol.161 , pp. 289-298
    • Hagenblad, J.1    Nordborg, M.2
  • 17
    • 2442692750 scopus 로고    scopus 로고
    • Low linkage disequilibrium indicative of recombination in foot-and-mouth disease virus gene sequence alignments
    • HAYDON, D. T., A. D. S. BASTOS and P. AWADALLA, 2004 Low linkage disequilibrium indicative of recombination in foot-and-mouth disease virus gene sequence alignments. J. Gen. Virol. 85: 1095-1100.
    • (2004) J. Gen. Virol. , vol.85 , pp. 1095-1100
    • Haydon, D.T.1    Bastos, A.D.S.2    Awadalla, P.3
  • 18
    • 0025299784 scopus 로고
    • Reconstructing evolution of sequences subject to recombination using parsimony
    • HEIN, J., 1990 Reconstructing evolution of sequences subject to recombination using parsimony. Math. Biosci. 98(2): 185-200.
    • (1990) Math. Biosci. , vol.98 , Issue.2 , pp. 185-200
    • Hein, J.1
  • 19
    • 0027471670 scopus 로고
    • A heuristic method to reconstruct the history of sequences subject to recombination
    • HEIN, J., 1993 A heuristic method to reconstruct the history of sequences subject to recombination. J. Mol. Evol. 36(4): 396-405.
    • (1993) J. Mol. Evol. , vol.36 , Issue.4 , pp. 396-405
    • Hein, J.1
  • 21
    • 0034005498 scopus 로고    scopus 로고
    • Human mitochondrial DNA recombination: Can it be true?
    • HEY, J., 2000 Human mitochondrial DNA recombination: Can it be true? Trends Ecol. Evol. 15(5): 181-182.
    • (2000) Trends Ecol. Evol. , vol.15 , Issue.5 , pp. 181-182
    • Hey, J.1
  • 22
    • 0031035812 scopus 로고    scopus 로고
    • A coalescent estimator of the population recombination rate
    • HEY, J., and J. WAKELEY, 1997 A coalescent estimator of the population recombination rate. Genetics 145: 833-846.
    • (1997) Genetics , vol.145 , pp. 833-846
    • Hey, J.1    Wakeley, J.2
  • 23
    • 0001160612 scopus 로고
    • Linkage disequilibrium in finite populations
    • HILL, W., and A. ROBERTSON, 1968 Linkage disequilibrium in finite populations. Theor. Appl. Genet. 33: 54-78.
    • (1968) Theor. Appl. Genet. , vol.33 , pp. 54-78
    • Hill, W.1    Robertson, A.2
  • 24
    • 0020744702 scopus 로고
    • Properties of a neutral allele model with intragenic recombination
    • HUDSON, R., 1983 Properties of a neutral allele model with intragenic recombination. Theor. Popul. Biol. 23: 183-201.
    • (1983) Theor. Popul. Biol. , vol.23 , pp. 183-201
    • Hudson, R.1
  • 25
    • 0035692320 scopus 로고    scopus 로고
    • Two-locus sampling distributions and their application
    • HUDSON, R. R., 2001 Two-locus sampling distributions and their application. Genetics 159: 1805-1817.
    • (2001) Genetics , vol.159 , pp. 1805-1817
    • Hudson, R.R.1
  • 26
    • 0022211482 scopus 로고
    • Statistical properties of the number of recombination events in the history of a sample of DNA sequences
    • HUDSON, R. R., and N. L. KAPLAN, 1985 Statistical properties of the number of recombination events in the history of a sample of DNA sequences. Genetics 111: 147-164.
    • (1985) Genetics , vol.111 , pp. 147-164
    • Hudson, R.R.1    Kaplan, N.L.2
  • 27
    • 30744470609 scopus 로고    scopus 로고
    • Application of phylogenetic networks in evolutionary studies
    • HUSON, D. H., and D. BRYANT, 2006 Application of phylogenetic networks in evolutionary studies. Mol. Biol. Evol. 23: 254-267.
    • (2006) Mol. Biol. Evol. , vol.23 , pp. 254-267
    • Huson, D.H.1    Bryant, D.2
  • 28
    • 0035986881 scopus 로고    scopus 로고
    • Recombination or mutational hot spots in human mtDNA?
    • INNAN, H., and M. NORDBORG, 2002 Recombination or mutational hot spots in human mtDNA? Mol. Biol. Evol. 19(7): 1122-1127.
    • (2002) Mol. Biol. Evol. , vol.19 , Issue.7 , pp. 1122-1127
    • Innan, H.1    Nordborg, M.2
  • 29
    • 0029963710 scopus 로고    scopus 로고
    • A program for calculating and displaying compatibility matrices as an aid in determining reticulate evolution in molecular sequences
    • JAKOBSEN, I. B., and S. EASTEAL, 1996 A program for calculating and displaying compatibility matrices as an aid in determining reticulate evolution in molecular sequences. Comput. Appl. Biosci. 12(4): 291-295.
    • (1996) Comput. Appl. Biosci. , vol.12 , Issue.4 , pp. 291-295
    • Jakobsen, I.B.1    Easteal, S.2
  • 30
    • 0036728258 scopus 로고    scopus 로고
    • The rate of recombination in Wolbachia bacteria
    • JIGGINS, F. M., 2002 The rate of recombination in Wolbachia bacteria. Mol. Biol. Evol. 19(9): 1640-1643.
    • (2002) Mol. Biol. Evol. , vol.19 , Issue.9 , pp. 1640-1643
    • Jiggins, F.M.1
  • 32
    • 0014494672 scopus 로고
    • The number of heterozygous nucleotide sites maintained in a finite population due to steady flux of mutations
    • KIMURA, M., 1969 The number of heterozygous nucleotide sites maintained in a finite population due to steady flux of mutations. Genetics 61: 893-903.
    • (1969) Genetics , vol.61 , pp. 893-903
    • Kimura, M.1
  • 33
    • 33845412091 scopus 로고
    • The coalescent
    • KINGMAN, J., 1982 The coalescent. Stoch. Proc. Appl. 13: 235-248.
    • (1982) Stoch. Proc. Appl. , vol.13 , pp. 235-248
    • Kingman, J.1
  • 34
    • 0033258426 scopus 로고    scopus 로고
    • Use of atp6 in fungal phylogenetics: An example from the boletales
    • KRETZER, A. M., and T. D. BRUNS, 1999 Use of atp6 in fungal phylogenetics: an example from the boletales. Mol. Phylogenet. Evol. 13(3): 483-492.
    • (1999) Mol. Phylogenet. Evol. , vol.13 , Issue.3 , pp. 483-492
    • Kretzer, A.M.1    Bruns, T.D.2
  • 35
    • 0033756316 scopus 로고    scopus 로고
    • Maximum likelihood estimation of recombination rates from population data
    • KUHNER, M. K., J. YAMATO and J. FELSENSTEIN, 2000 Maximum likelihood estimation of recombination rates from population data. Genetics 156: 1393-1401.
    • (2000) Genetics , vol.156 , pp. 1393-1401
    • Kuhner, M.K.1    Yamato, J.2    Felsenstein, J.3
  • 36
    • 0034748612 scopus 로고    scopus 로고
    • Recombination in animal mitochondrial DNA: Evidence from published sequences
    • LADOUKAKIS, E. D., and E. ZOUROS, 2001 Recombination in animal mitochondrial DNA: evidence from published sequences. Mol. Biol. Evol. 18(11): 2127-2131.
    • (2001) Mol. Biol. Evol. , vol.18 , Issue.11 , pp. 2127-2131
    • Ladoukakis, E.D.1    Zouros, E.2
  • 37
    • 84963056475 scopus 로고
    • A method of selection of characters in numerical taxonomy
    • LE QUESNE, W. J., 1969 A method of selection of characters in numerical taxonomy. Syst. Zool. 18(2): 201-205.
    • (1969) Syst. Zool. , vol.18 , Issue.2 , pp. 201-205
    • Le Quesne, W.J.1
  • 38
    • 0002907949 scopus 로고
    • The interaction of selection and linkage. I. General considerations; heterotic models
    • LEWONTIN, R., 1964 The interaction of selection and linkage. I. General considerations; heterotic models. Genetics 49: 49-67.
    • (1964) Genetics , vol.49 , pp. 49-67
    • Lewontin, R.1
  • 39
    • 0033824415 scopus 로고    scopus 로고
    • RDP: Detection of recombination amongst aligned sequences
    • MARTIN, D., and E. RYBICKI, 2000 RDP: detection of recombination amongst aligned sequences. Bioinformatics 16(6): 562-563.
    • (2000) Bioinformatics , vol.16 , Issue.6 , pp. 562-563
    • Martin, D.1    Rybicki, E.2
  • 40
    • 0033926910 scopus 로고    scopus 로고
    • Molecular phylogeny of European muroid rodents based on complete cytochrome b sequences
    • MARTIN, Y., G. GERLACH, C. SCHLOTTERER and A. MEYER, 2000 Molecular phylogeny of European muroid rodents based on complete cytochrome b sequences. Mol. Phylogenet. Evol. 16(1): 37-47.
    • (2000) Mol. Phylogenet. Evol. , vol.16 , Issue.1 , pp. 37-47
    • Martin, Y.1    Gerlach, G.2    Schlotterer, C.3    Meyer, A.4
  • 41
    • 84941871856 scopus 로고
    • The Kolmogorov-Smirnov test for goodness of fit
    • MASSEY, F. J., 1951 The Kolmogorov-Smirnov test for goodness of fit. J. Am. Stat. Assoc. 46(253): 68-78.
    • (1951) J. Am. Stat. Assoc. , vol.46 , Issue.253 , pp. 68-78
    • Massey, F.J.1
  • 42
    • 0026708873 scopus 로고
    • Analyzing the mosaic structure of genes
    • MAYNARD SMITH, J., 1992 Analyzing the mosaic structure of genes. J. Mol. Evol. 34(2): 126-129.
    • (1992) J. Mol. Evol. , vol.34 , Issue.2 , pp. 126-129
    • Maynard Smith, J.1
  • 43
    • 0036898802 scopus 로고    scopus 로고
    • Recombination in animal mitochondrial DNA
    • MAYNARD SMITH, J., and N. H. SMITH, 2002 Recombination in animal mitochondrial DNA. Mol. Biol. Evol. 19(12): 2330-2332.
    • (2002) Mol. Biol. Evol. , vol.19 , Issue.12 , pp. 2330-2332
    • Maynard Smith, J.1    Smith, N.H.2
  • 44
    • 0034097468 scopus 로고    scopus 로고
    • TOPAL 2.0: Improved detection of mosaic sequences within multiple alignments
    • MCGUIRE, G., and F. WRIGHT, 2000 TOPAL 2.0: improved detection of mosaic sequences within multiple alignments. Bioinformatics 16: 130-134.
    • (2000) Bioinformatics , vol.16 , pp. 130-134
    • McGuire, G.1    Wright, F.2
  • 45
    • 0036199914 scopus 로고    scopus 로고
    • A coalescent-based method for detecting and estimating recombination from gene sequences
    • MCVEAN, G., P. AWADALLA and P. FEARNHEAD, 2002 A coalescent-based method for detecting and estimating recombination from gene sequences. Genetics 160: 1231-1241.
    • (2002) Genetics , vol.160 , pp. 1231-1241
    • McVean, G.1    Awadalla, P.2    Fearnhead, P.3
  • 46
    • 0035544521 scopus 로고    scopus 로고
    • What do patterns of genetic variability reveal about mitochondrial recombination?
    • MCVEAN, G. A., 2001 What do patterns of genetic variability reveal about mitochondrial recombination? Heredity 87: 613-620.
    • (2001) Heredity , vol.87 , pp. 613-620
    • McVean, G.A.1
  • 47
    • 0036811711 scopus 로고    scopus 로고
    • A genealogical interpretation of linkage disequilibrium
    • MCVEAN, G. A. T., 2002 A genealogical interpretation of linkage disequilibrium. Genetics 162: 987-991.
    • (2002) Genetics , vol.162 , pp. 987-991
    • McVean, G.A.T.1
  • 48
    • 21444455535 scopus 로고    scopus 로고
    • Dual multiple change-point model leads to more accurate recombination detection
    • MININ, V. N., K. S. DORMAN, F. FANG and M. A. SUCHARD, 2005 Dual multiple change-point model leads to more accurate recombination detection. Bioinformatics 21: 3034-3042.
    • (2005) Bioinformatics , vol.21 , pp. 3034-3042
    • Minin, V.N.1    Dorman, K.S.2    Fang, F.3    Suchard, M.A.4
  • 49
    • 0023732921 scopus 로고
    • Molecular and phenotypic variation of the white locus region in Drosophila melanogaster
    • MIYASHITA, N., and C. H. LANGLEY, 1988 Molecular and phenotypic variation of the white locus region in Drosophila melanogaster. Genetics 120: 199-212.
    • (1988) Genetics , vol.120 , pp. 199-212
    • Miyashita, N.1    Langley, C.H.2
  • 50
    • 0037279717 scopus 로고    scopus 로고
    • Bounds on the minimum number of recombination events in a sample history
    • MYERS, S. R., and R. C. GRIFFITHS, 2003 Bounds on the minimum number of recombination events in a sample history. Genetics 163: 375-394.
    • (2003) Genetics , vol.163 , pp. 375-394
    • Myers, S.R.1    Griffiths, R.C.2
  • 51
    • 0031153858 scopus 로고    scopus 로고
    • Site-by-site estimation of the rate of substitution and the correlation of rates in mitochondrial DNA
    • NIELSEN, R., 1997 Site-by-site estimation of the rate of substitution and the correlation of rates in mitochondrial DNA. Syst. Biol. 46(2): 346-353.
    • (1997) Syst. Biol. , vol.46 , Issue.2 , pp. 346-353
    • Nielsen, R.1
  • 52
    • 0033965571 scopus 로고    scopus 로고
    • Estimation of population parameters and recombination rates from single nucleotide polymorphisms
    • NIELSEN, R., 2000 Estimation of population parameters and recombination rates from single nucleotide polymorphisms. Genetics 154: 931-942.
    • (2000) Genetics , vol.154 , pp. 931-942
    • Nielsen, R.1
  • 53
    • 0022472311 scopus 로고
    • Estimating the reliability of evolutionary trees
    • PENNY, D., and M. HENDY, 1986 Estimating the reliability of evolutionary trees. Mol. Biol. Evol. 3(5): 403-417.
    • (1986) Mol. Biol. Evol. , vol.3 , Issue.5 , pp. 403-417
    • Penny, D.1    Hendy, M.2
  • 54
    • 8444235408 scopus 로고    scopus 로고
    • A broad survey of recombination in animal mitochondria
    • PIGANEAU, G., M. GARDNER and A. EYRE-WALKER, 2004 A broad survey of recombination in animal mitochondria. Mol. Biol. Evol. 21(12): 2319-2325.
    • (2004) Mol. Biol. Evol. , vol.21 , Issue.12 , pp. 2319-2325
    • Piganeau, G.1    Gardner, M.2    Eyre-Walker, A.3
  • 55
    • 0034814736 scopus 로고    scopus 로고
    • Unveiling the molecular clock in the presence of recombination
    • POSADA, D., 2001 Unveiling the molecular clock in the presence of recombination. Mol. Biol. Evol. 18(10): 1976-1978.
    • (2001) Mol. Biol. Evol. , vol.18 , Issue.10 , pp. 1976-1978
    • Posada, D.1
  • 56
    • 0036097812 scopus 로고    scopus 로고
    • Evaluation of methods for detecting recombination from DNA sequences: Empirical data
    • POSADA, D., 2002 Evaluation of methods for detecting recombination from DNA sequences: empirical data. Mol. Biol. Evol. 19(5): 708-717.
    • (2002) Mol. Biol. Evol. , vol.19 , Issue.5 , pp. 708-717
    • Posada, D.1
  • 57
    • 0035923699 scopus 로고    scopus 로고
    • Evaluation of methods for detecting recombination from DNA sequences: Computer simulations
    • USA
    • POSADA, D., and K. A. CRANDALL, 2001 Evaluation of methods for detecting recombination from DNA sequences: computer simulations. Proc. Natl. Acad. Sci. USA 98(24): 13757-13762.
    • (2001) Proc. Natl. Acad. Sci. , vol.98 , Issue.24 , pp. 13757-13762
    • Posada, D.1    Crandall, K.A.2
  • 58
    • 0036183042 scopus 로고    scopus 로고
    • The effect of recombination on the accuracy of phylogeny estimation
    • POSADA, D., and K. A. CRANDALL, 2002 The effect of recombination on the accuracy of phylogeny estimation. J. Mol. Evol. 54(3): 396-402.
    • (2002) J. Mol. Evol. , vol.54 , Issue.3 , pp. 396-402
    • Posada, D.1    Crandall, K.A.2
  • 59
    • 16244407400 scopus 로고    scopus 로고
    • Evidence of recombination in the norovirus capsid gene
    • ROHAYEM, J., J. MUNCH and A. RETHWILM, 2005 Evidence of recombination in the norovirus capsid gene. J. Virol. 79(8): 4977-4990.
    • (2005) J. Virol. , vol.79 , Issue.8 , pp. 4977-4990
    • Rohayem, J.1    Munch, J.2    Rethwilm, A.3
  • 60
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • SAITOU, N., and M. NEI, 1987 The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4(4): 406-425.
    • (1987) Mol. Biol. Evol. , vol.4 , Issue.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 61
    • 0024356449 scopus 로고
    • Statistical tests for detecting gene conversion
    • SAWYER, S., 1989 Statistical tests for detecting gene conversion. Mol. Biol. Evol. 6(5): 526-538.
    • (1989) Mol. Biol. Evol. , vol.6 , Issue.5 , pp. 526-538
    • Sawyer, S.1
  • 62
    • 0027484771 scopus 로고
    • Estimates of linkage disequilibrium and the recombination parameter determined from segregating nucleotide sites in the alcohol dehydrogenase region of Drosophila pseudoobscura
    • SCHAEFFER, S. W., and E. L. MILLER, 1993 Estimates of linkage disequilibrium and the recombination parameter determined from segregating nucleotide sites in the alcohol dehydrogenase region of Drosophila pseudoobscura. Genetics 135: 541-552.
    • (1993) Genetics , vol.135 , pp. 541-552
    • Schaeffer, S.W.1    Miller, E.L.2
  • 63
    • 0033793521 scopus 로고    scopus 로고
    • Consequences of recombination on traditional phylogenetic analysis
    • SCHIERUP, M. H., and J. HEIN, 2000a Consequences of recombination on traditional phylogenetic analysis. Genetics 156: 879-891.
    • (2000) Genetics , vol.156 , pp. 879-891
    • Schierup, M.H.1    Hein, J.2
  • 64
    • 0033805038 scopus 로고    scopus 로고
    • Recombination and the molecular clock
    • SCHIERUP, M. H., and J. HEIN, 2000b Recombination and the molecular clock. Mol. Biol. Evol. 17(10): 1578-1579.
    • (2000) Mol. Biol. Evol. , vol.17 , Issue.10 , pp. 1578-1579
    • Schierup, M.H.1    Hein, J.2
  • 65
    • 0028333697 scopus 로고
    • Linkage disequilibrium in growing and stable populations
    • SLATKIN, M., 1994 Linkage disequilibrium in growing and stable populations. Genetics 137: 331-336.
    • (1994) Genetics , vol.137 , pp. 331-336
    • Slatkin, M.1
  • 66
    • 0025951996 scopus 로고
    • Pairwise comparisons of mitochondrial DNA sequences in stable and exponentially growing populations
    • SLATKIN, M., and R. R. HUDSON, 1991 Pairwise comparisons of mitochondrial DNA sequences in stable and exponentially growing populations. Genetics 129: 555-562.
    • (1991) Genetics , vol.129 , pp. 555-562
    • Slatkin, M.1    Hudson, R.R.2
  • 67
    • 84959849415 scopus 로고
    • Detecting evolutionary incompatibilities from protein sequences
    • SNEATH, P., M. SACKIN and R. AMBLER, 1975 Detecting evolutionary incompatibilities from protein sequences. Syst. Zool. 24(3): 311-332.
    • (1975) Syst. Zool. , vol.24 , Issue.3 , pp. 311-332
    • Sneath, P.1    Sackin, M.2    Ambler, R.3
  • 68
    • 16544370982 scopus 로고    scopus 로고
    • On the minimum number of recombination events in the evolutionary history of DNA sequences
    • SONG, Y. S., and J. HEIN, 1999 On the minimum number of recombination events in the evolutionary history of DNA sequences. J. Math. Biol. 48(2): 160-186.
    • (1999) J. Math. Biol. , vol.48 , Issue.2 , pp. 160-186
    • Song, Y.S.1    Hein, J.2
  • 70
    • 0033860989 scopus 로고    scopus 로고
    • Molecular phylogenetic relationships of pond frogs distributed in the Palearctic region inferred from DNA sequences of mitochondrial 12S ribosomal RNA and cytochrome b genes
    • SUMIDA, M., M. OGATA and M. NISHIOKA, 2000 Molecular phylogenetic relationships of pond frogs distributed in the Palearctic region inferred from DNA sequences of mitochondrial 12S ribosomal RNA and cytochrome b genes. Mol. Phylogenet. Evol. 16(2): 278-285.
    • (2000) Mol. Phylogenet. Evol. , vol.16 , Issue.2 , pp. 278-285
    • Sumida, M.1    Ogata, M.2    Nishioka, M.3
  • 72
    • 0024313579 scopus 로고
    • Statistical method for testing the neutral mutation hypothesis by DNA polymorphism
    • TAJIMA, F., 1989 Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123: 585-595.
    • (1989) Genetics , vol.123 , pp. 585-595
    • Tajima, F.1
  • 74
    • 0015219691 scopus 로고
    • Fitting discrete probability distributions to evolutionary events
    • UZZELL, T., and K. W. CORBIN, 1971 Fitting discrete probability distributions to evolutionary events. Science 172: 1089-1096.
    • (1971) Science , vol.172 , pp. 1089-1096
    • Uzzell, T.1    Corbin, K.W.2
  • 75
    • 0033955443 scopus 로고    scopus 로고
    • A comparison of estimators of the population recombination rate
    • WALL, J. D., 2000 A comparison of estimators of the population recombination rate. Mol. Biol. Evol. 17(1): 156-163.
    • (2000) Mol. Biol. Evol. , vol.17 , Issue.1 , pp. 156-163
    • Wall, J.D.1
  • 76
    • 0031892518 scopus 로고    scopus 로고
    • Phylogenetic profiles: A graphical method for detecting genetic recombinations in homologous sequences
    • WEILLER, G. F., 1998 Phylogenetic profiles: a graphical method for detecting genetic recombinations in homologous sequences. Mol. Biol. Evol. 15(3): 326-335.
    • (1998) Mol. Biol. Evol. , vol.15 , Issue.3 , pp. 326-335
    • Weiller, G.F.1
  • 77
    • 0022712387 scopus 로고
    • Nonuniformrecombination within the human beta-globin gene cluster
    • WEIR, B., and W. HILL, 1986 Nonuniformrecombination within the human beta-globin gene cluster. Am. J. Hum. Genet. 38(5): 776-781.
    • (1986) Am. J. Hum. Genet. , vol.38 , Issue.5 , pp. 776-781
    • Weir, B.1    Hill, W.2
  • 78
    • 0034096027 scopus 로고    scopus 로고
    • The coalescent with gene conversion
    • WIUF, C., and J. HEIN, 2000 The coalescent with gene conversion. Genetics 155: 451-462.
    • (2000) Genetics , vol.155 , pp. 451-462
    • Wiuf, C.1    Hein, J.2
  • 79
    • 0034815265 scopus 로고    scopus 로고
    • A simulation study of the reliability of recombination detection methods
    • WIUF, C., T. CHRISTENSEN and J. HEIN, 2001 A simulation study of the reliability of recombination detection methods. Mol. Biol. Evol. 18(10): 1929-1939.
    • (2001) Mol. Biol. Evol. , vol.18 , Issue.10 , pp. 1929-1939
    • Wiuf, C.1    Christensen, T.2    Hein, J.3
  • 80
    • 0027132974 scopus 로고
    • Maximum-likelihood estimation of phylogeny from DNA sequences when substitution rates differ over sites
    • YANG, Z., 1993 Maximum-likelihood estimation of phylogeny from DNA sequences when substitution rates differ over sites. Mol. Biol. Evol. 10(6): 1396-1401.
    • (1993) Mol. Biol. Evol. , vol.10 , Issue.6 , pp. 1396-1401
    • Yang, Z.1
  • 81
    • 0028813337 scopus 로고
    • A space-time process model for the evolution of DNA sequences
    • YANG, Z., 1995 A space-time process model for the evolution of DNA sequences. Genetics 139: 993-1005.
    • (1995) Genetics , vol.139 , pp. 993-1005
    • Yang, Z.1
  • 82
    • 0030683599 scopus 로고    scopus 로고
    • PAML: A program package for phylogenetic analysis by maximum likelihood
    • YANG, Z., 1997 PAML: a program package for phylogenetic analysis by maximum likelihood. Comput. Appl. Biosci. 13(5): 555-556.
    • (1997) Comput. Appl. Biosci. , vol.13 , Issue.5 , pp. 555-556
    • Yang, Z.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.