Proteins of novel lactic acid bacteria from Apis mellifera mellifera: An insight into the production of known extra-cellular proteins during microbial stress

BMC Microbiology

Volumn 13, Issue 1, 2013, Pages

  Butler, Èile ^a   Alsterfjord, Magnus ^a   Olofsson, Tobias C ^a   Karlsson, Christofer ^a   Malmström, Johan ^a   Vásquez, Alejandra ^a  

^a LUND UNIVERSITY   (Sweden)

Author keywords

Honeybee; Lactic acid bacteria; Microbial stress; Proteomics; Symbionts

Indexed keywords

BACTERIAL ENZYME; BACTERIAL PROTEIN; BACTERIOCIN; CHAPERONE; LYSOZYME;

ANTIMICROBIAL ACTIVITY; APIS MELLIFERA; ARTICLE; BACTERIAL GENE; BACTERIAL GENOME; BACTERIAL STRESS; BACTERIUM IDENTIFICATION; BIFIDOBACTERIUM; BIFIDOBACTERIUM CORYNEFORME; BIOFILM; GENOME ANALYSIS; GENOME SIZE; LACTIC ACID BACTERIUM; LACTOBACILLUS; MICROFLORA; NONHUMAN; NUCLEOTIDE SEQUENCE; OPERON; PROTEIN FUNCTION; PROTEIN SECRETION; STRESS; SYMBIONT;

ANIMALIA; APIS MELLIFERA; APIS MELLIFERA MELLIFERA; APOIDEA; BACTERIA (MICROORGANISMS); BIFIDOBACTERIUM; LACTOBACILLUS;

ANIMALS; BACTERIAL PROTEINS; BEES; BIFIDOBACTERIUM; DNA, BACTERIAL; LACTOBACILLUS; MOLECULAR SEQUENCE DATA; PROTEOME; SEQUENCE ANALYSIS, DNA; STRESS, PHYSIOLOGICAL;

EID: 84886875528     PISSN: None     EISSN: 14712180     Source Type: Journal    
DOI: 10.1186/1471-2180-13-235     Document Type: Article

References (60)

1. The genomics of lactic acid bacteria. Pfeiler EA, Klaenhammer T, Trends Microbiol 2007 15 546
2. Evolutionary genomics of lactic acid bacteria. Makarova K, Koonin E, J Bacteriol 2007 189 1199 1208
3. Lactic acid bacteria of foods and their current taxonomy. Stiles M, Holzapfel W, Int J Food Microbiol 1997 36 1 29
4. Comparitive genomics of Bifidobacterium, Lactobacillus and related probiotic genera. Lukjancenko O, Ussery D, Wassenaar TM, Microb Ecol 2012 63 651 673
5. De Vuyst L, Vandamme E, Bacteriocins of lactic acid bacteria Scotland: Blackie Academic & Professional 1994 320 539
6. The extracellular biology of the lactobacilli. Kleerebezem M, Hols P, Bernard E, Rolain T, Zhou M, FEMS Microbiol Rev 2010 34 199 230
7. The genus Lactobacillus and Carnobacterium. Hammes WP, Hertel C, Prokaryotes 2006 4 320 403
8. Koonin E, The logic of chance: The nature and origin of biological evolution New Jersey, US: First. Pearson Education 2012
9. Comparative genomics of the lactic acid bacteria. Makarova K, Slesarev A, Wolf Y, Sorokin A, Mirkin B, Koonin E, Pavlov A, Pavlova N, Karamychev V, Polouchine N, Shakhova V, Grigoriev I, Lou Y, Rohksar D, Lucas S, Huang K, Goodstein DM, Hawkins T, Plengvidhya V, Welker D, Hughes J, Goh Y, Benson A, Baldwin K, Lee J-H, Díaz-Muñiz I, Dosti B, Smeianov V, Wechter W, Barabote R, et al. Proc Natl Acad Sci U S A 2006 103 15611 15616
10. Bifidobacterium asteroides PRL2011 Genome Analysis Reveals Clues for Colonization of the Insect Gut. Bottacini F, Milani C, Turroni F, Sanchez B, Foroni E, Duranti S, Serafini F, Viappiani A, Strati F, Ferrarini A, Delledonne M, Henrissat B, Coutinho P, Fitzgerald GF, Margolles A, van Sinderen D, Ventura M, PLoS One 2012 7
11. Potential uses of probiotics in clinical practice. Reid G, Jass J, Sebulsky MT, McCormick JK, Clin Microbiol Rev 2003 16 658 672
12. The complete genome sequence of Lactobacillus bulgaricus reveals extensive and ongoing reductive evolution. Van de Guchte M, Penaud S, Grimaldi C, Barbe V, Bryson K, Nicolas P, Robert C, Oztas S, Mangenot S, Couloux A, Loux V, Dervyn R, Bossy R, Bolotin A, Batto J-M, Walunas T, Gibrat J-F, Bessières P, Weissenbach J, Ehrlich SD, Maguin E, Proc Natl Acad Sci U S A 2006 103 9274 9279
13. In silico prediction of horizontal gene transfer events in Lactobacillus delbrueckii ssp. bulgaricus and Streptococcus thermophilus reveals proto-cooperation in yoghurt manufacturing. Liu M, Siezen R, Nauta A, Appl Environ Microbiol 2009 75 4120
14. Detection and identification of a novel lactic acid bacterial flora within the honey stomach of the honey Bee apis mellifera. Olofsson TC, Vásquez A, Curr Micriobiology 2008 57 356
15. Symbionts as major modulators of insect health: lactic acid bacteria and honey bees. Vásquez A, Forsgren E, Fries I, Paxton RJ, Flaberg E, Olofsson TC, PLoS ONE 7 3 33188 doi:10.1371/journal.pone.0033188
16. The lactic acid bacteria involved in the production of bee pollen and bee bread. Vásquez A, Olofsson TC, J Apic Res Bee World 2009 48 3 189 195
17. A scientific note on the lactic acid bacterial flora discovered in the honey stomach of Swedish honey bees-a continuing study on honey bees in the USA. Vásquez A, Olofsson TC, Sammataro D, Apidologie 2009 40 26 28
18. Novel lactic acid bacteria inhibiting Paenibacillus larvae in honey bee larvae. Forsgren E, Olofsson TC, Vásquez A, Fries I, Apidologie 2010 42 99 108
19. Stress responses in lactic acid bacteria. van de Guchte M, Pascale S, Chervaux C, Smokvina T,DS, Maguin E, Antonie Van Leeuwenhock 2002 82 187 216
20. Secretion and subcellular localizations of bacterial proteins: a semantic awareness issue. Desvaux M, Hebraud M, Talon R, Henderson IR, Trends Microbiol 2009 17 139 145
21. LAB-secretome: a genome scale comparative analysis of the predicted extracellular and surface associated proteins of lactic acid bacteria. Zhou M, Theunissen D, Wels M, Siezen R, BMC Genomics 2010 11
22. Patrucia S, Hutu I, Economic benefits of using prebiotic and probiotic products as supplements in stimulation feeds administered to bee colonies Anim Sci: Turkish J Vet 2013 37
23. Surface and Adhesion properties of Lactobacilli. Deepika G, Charalampopoulus D, Advances in Applied Microbiology 2010 70 127 152
24. Bacteriocins: developing innate immunity for food. Cotter PD, Hill C, Ross R, Nat Rev Microbiol 2005 3 777 788
25. Review: bacteriocins of lactic acid bacteria. Cintas L, Casaus M, Herranz C, Nes I, Hernandez P, Food Sci Technol Int 2001 7 281 305
26. Production of class II bacteriocins by lactic acid bacteria, an example of biological warfare and communication. Eijsink VG, Axelsson L, Diep DB, Holo H, Antonie Van Leeuwenhock 2002 81 639 654
27. Cloning, expression and nucleotide sequence of the Lactobacillus helveticus 481 gene encoding the bacteriocin helveticin J. Joerger M, Klaenhammer T, J Bacteriol 1990 172
28. Transcription analysis of the lantibiotic gene cluster from Bifidobacterium longum DJO10A. Lee J, Li X, O'Sullivan D, Appl Environ Microbiol 2011 77 5879 5887
29. COG3926 And COG5526: a tale of two new lysozyme-like protein families. Pei J, Grishin NV, Protein Sci 2005 14 2574 2581
30. Production of Hydrolases by Lactic Acid Bacteria and Bifidobacteria and Their Antibiotic Resistance. Novik G, Astapovich N, Ryabaya N, Appl Biochem Microbiol 2007 43 292 297
31. Lactic acid bacteria contribution to gut microbiota complexity: lights and shadows. Pessione E, Front Cell Infect Microbiol 2012 2
32. Moonlighting proteins: old proteins learning new tricks. Jeffery CJ, TRENDS Genet 2003 19 415
33. Cell Surface Lactobacillus plantarum LA318 glyceraldehyde 3-phosphate dehydrogenase (GAPDH) adheres to human colonic mucin. Kinoshita H, Uchida H, Kawai Y, Kawasaki T, Wakahara N, Matsuo H, Watanabe M, Kitazawa H, Saito T, J Appl Microbiol 2008 104 1667 1674
34. Heterologous protein display on the cell surface of Lactic acid bacteria mediated by S-layer protein. Hu S, Kong J, Sun Z, Han L, Kong W, Yang P, Microb Cell Fact 2011 10 86
35. S-layer proteins. Sara M, Sleyter UB, J Bacteriol 2000 182 859
36. Lactobacillus surface layers and their applications. Åvall- Jääskeläinen S, Palva A, FEMS Microbiol Rev 2005 29 511 529
37. Identification and functional analysis of the S-layer protein SplA of Paenibacillus larvae, the causative agent of american foulbrood of honey bees. Poppinga L, Janesch B, Fünfhaus A, Sekot G, Garcia-Gonzalez E, Hertlein G, Hedtke K, Schäffer C, Genersch E, PLoS Pathog 2012 8 1002716
38. Genes and molecules of lactobacilli supporting probiotic action. LeBeer S, Vanderleyden J, De Keersmaecker SC, Microbiol Mol Biol Rev 2008 72 728 764
39. Surface-layer protein extracts from Lactobacillus helveticus inhibit enterohaemorrhagic Escherichia coli O157:H7 adhesion to epithelial cells. Johnson-Henry K, Hagen K, Gordonpour M, Tompkins T, Sherman P, Cell Microbiol 2007 9 356 367
40. Implication of an outer surface lipoprotein in adhesion of Bifidobacterium bifidum to caco-2 cells. Guglielmetti S, Tamagnini I, Mora D, Minuzzo M, Scarafoni A, Arioli S, Hellman J, Parini C, Appl Environ Microbiol 2008 74
41. Molecular chaperones in Lactic acid bacteria: physiological consequences and biochemical properties. Sugimoto S, Al-Mahin A, Sonomoto K, J Biosci Bioeng 2008 106 324 336
42. The secY translocation complex: convergence of genetics and structure. Flower AM, Trends Microbiol 2007 15 203 210
43. GroEL of Lactobacillus johnsoni La1 (NCC533) is cell surface associated: potential role in interactions with the host and the gastric pathogen Helicobacter pylori. Bergonzelli GE, Granato D, Pridmore RD, Marvin-Guy LF, Donnicola D, Infect Immun 2006 74 425
44. The Hsp70 and Hsp60 chaperone machines. Bukau B, Horwich AL, Cell 1998 92 351 366
45. Nonclassical protein secretion by Bacillus subtilis in the stationary phase is not due to cell lysis. Hu H-J, Yang C-K, Ewis HE, Zhang X-Z, Lu C-D, Pan Y, Abdelal AT, Tai PC, J Bacteriol 2011 193
46. Two major medicinal honeys have different mechanisms of bactericidal activity. Kwakman PH, te Velde A, de Boer L, PLoS One 2011 6 17709
47. Bactericidal activity of different honeys against pathogenic bacteria. Lusby P, Coombes A, Wilkinson J, Elsevier 2005 36 464 467
48. Identification and immunogenicity of group A Streptococcus culture supernatant proteins. Lei B, Mackie S, Musser JM, Infect Immun 2000 68 6807 6818
49. Proteome-wide selected reaction monitoring assays for the human pathogen Streptococcus pyogenes. Karlsson C, Malmström L, Aebersold R, Malmström J, Nat Commun 2012 3 2367
50. Tricine-SDS-PAGE. Schägger H, Nat Protoc 2006 1 16 22
51. Mass spectrometric sequencing of proteins silver-stained polyacrylamide gels. Shevchenko A, Wilm M, Vorm O, Mann M, Anal Chem 1996 68 850
52. Probability-based protein identification by searching sequence databases using mass spectrometry data. Perkins DN, Pappin DJ, Creasy D, Cottrell J, Electrophoresis 1999 20 3551 3567
53. Basic local alignment search tool. Altschul SF, Gish W, Miller W, Myers E, Lipman D, J Mol Biol 1990 215 403 410
54. BLAST+: architecture and explanations. Camacho C, Coulouris G, Avagyan V, Ma N, Papadopolous J, Bealer K, Madden TL, BM Bioinforma 2009 10 421
55. The pfam protein families database. Finn RD, Mistry J, Tate J, Coggill P, Heger A, Pollington JE, Gavin OL, Gunasekaran P, Ceric G, Forslund K, Holm L, Sonnhammer ELL, Eddy SR, Bateman A, Nucleic Acids Res 2010 38 211 D222 Database issue
56. Apweiler R: signature-recognition methods in InterPro. Zdobnov EM, 2001 17 847 848
57. A new bioinformatics analysis tools framework at EMBL-EBI. Goujon M, McWilliam H, Li W, Valentin F, Squizzato S, Paern J, Lopez R, Nucleic Acids Res 2010 38 695 W699 Web Server issue
58. Prediction of transcription terminators in bacterial genomes. Ermolaeva MD, Khalak HG, White O, Smith HO, Salzberg SL, J Mol Biol 2000 301 27 33
59. The PRoteomics IDEntification (PRIDE) Converter 2 framework: an improved suite of tools to facilitate data submission to the PRIDE database and the ProteomeXchange consortium. Côté RG, Griss J, Dianes JA, Wang R, Wright JC, van den Toorn HWP, van Breukelen B, Heck AJR, Hulstaert N, Martens L, Reisinger F, Csordas A, Ovelleiro D, Perez-Rivevol Y, Barsnes H, Hermjakob H, Vizcaíno JA, Mol Cell Proteomics 2012 11 1682 1689
60. NCBI BLAST. [ http://blast.ncbi.nlm.nih.gov/ ]