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Bioinformatics
Volumn 25, Issue 7, 2009, Pages 962-963
DIYA: A bacterial annotation pipeline for any genomics lab
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CONTIG;
EID: 63549147824     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/btp097     Document Type: Article
Times cited : (62)
References (14)
  • 1
    • 8844261125 scopus 로고    scopus 로고
    • A system for automated bacterial (genome) integrated annotation-sabia
    • Almeida,L.G. et al. (2004) A system for automated bacterial (genome) integrated annotation-sabia. Bioinformatics, 20, 2832-2833.
    • (2004) Bioinformatics , vol.20 , pp. 2832-2833
    • Almeida, L.G.1
  • 2
    • 0025183708 scopus 로고
    • Basic local alignment search tool
    • Altschul,S.F. et al. (1990) Basic local alignment search tool. J. Mol. Biol., 215, 403-410.
    • (1990) J. Mol. Biol , vol.215 , pp. 403-410
    • Altschul, S.F.1
  • 3
    • 40549120596 scopus 로고    scopus 로고
    • The RAST Server: Rapid annotations using subsystems technology
    • Aziz,R.K. et al. (2008) The RAST Server: Rapid annotations using subsystems technology. BMC Genomics, 9, 75.
    • (2008) BMC Genomics , vol.9 , pp. 75
    • Aziz, R.K.1
  • 4
    • 28444458843 scopus 로고    scopus 로고
    • GARSA: Genomic analysis resources for sequence annotation
    • Davila,A.M. et al. (2005) GARSA: Genomic analysis resources for sequence annotation. Bioinformatics, 21, 4302-4303.
    • (2005) Bioinformatics , vol.21 , pp. 4302-4303
    • Davila, A.M.1
  • 5
    • 0036606576 scopus 로고    scopus 로고
    • Fast algorithms for large-scale genome alignment and comparison
    • Delcher,A.L. et al. (2002) Fast algorithms for large-scale genome alignment and comparison. Nucleic Acids Res., 30, 2478-2483.
    • (2002) Nucleic Acids Res , vol.30 , pp. 2478-2483
    • Delcher, A.L.1
  • 6
    • 0030854739 scopus 로고    scopus 로고
    • tRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence
    • Lowe,T.M. and Eddy,S.R. (1997) tRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res., 25, 955-964.
    • (1997) Nucleic Acids Res , vol.25 , pp. 955-964
    • Lowe, T.M.1    Eddy, S.R.2
  • 7
    • 39649117755 scopus 로고    scopus 로고
    • The impact of next-generation sequencing technology on genetics
    • Mardis,E.R. (2008) The impact of next-generation sequencing technology on genetics. Trends Genet., 24, 133-141.
    • (2008) Trends Genet , vol.24 , pp. 133-141
    • Mardis, E.R.1
  • 8
    • 0032518163 scopus 로고    scopus 로고
    • Microbial gene identification using interpolated Markov models
    • Salzberg,S.L. et al. (1998) Microbial gene identification using interpolated Markov models. Nucleic Acids Res., 26, 544-548.
    • (1998) Nucleic Acids Res , vol.26 , pp. 544-548
    • Salzberg, S.L.1
  • 9
    • 18644368714 scopus 로고    scopus 로고
    • The Bioperl toolkit: Perl modules for the life sciences
    • Stajich,J.E. et al. (2002) The Bioperl toolkit: Perl modules for the life sciences. Genome Res., 12, 1611-1618.
    • (2002) Genome Res , vol.12 , pp. 1611-1618
    • Stajich, J.E.1
  • 10
    • 18644378331 scopus 로고    scopus 로고
    • The generic genome browser: A building block for a model organism system database
    • Stein et al. (2002) The generic genome browser: A building block for a model organism system database. Genome Res., 12, 1599.
    • (2002) Genome Res , vol.12 , pp. 1599
    • Stein1
  • 11
    • 39149142575 scopus 로고    scopus 로고
    • CRISPR-a widespread system that provides acquired resistance against phages in bacteria and archaea
    • Sorek,R. et al.. (2008) CRISPR-a widespread system that provides acquired resistance against phages in bacteria and archaea. Nat. Rev. Microbiol., 6, 181-186.
    • (2008) Nat. Rev. Microbiol , vol.6 , pp. 181-186
    • Sorek, R.1
  • 12
    • 23144467676 scopus 로고    scopus 로고
    • BASys: A web server for automated bacterial genome annotation
    • Van Domselaar,G.H. et al. (2005) BASys: A web server for automated bacterial genome annotation. Nucleic Acids Res., 33, W455-W459.
    • (2005) Nucleic Acids Res , vol.33
    • Van Domselaar, G.H.1
  • 13
    • 40049105699 scopus 로고    scopus 로고
    • The development of PIPA: An integrated and automated pipeline for genome-wide protein function annotation
    • Yu,C. et al. (2008) The development of PIPA: An integrated and automated pipeline for genome-wide protein function annotation. BMC Bioinformatics, 9, 52.
    • (2008) BMC Bioinformatics , vol.9 , pp. 52
    • Yu, C.1
  • 14
    • 33644802711 scopus 로고    scopus 로고
    • A genome sequencing center in every lab
    • Zwick,M.E. (2005) A genome sequencing center in every lab. Eur. J. Hum. Genet., 13, 1167-1168.
    • (2005) Eur. J. Hum. Genet , vol.13 , pp. 1167-1168
    • Zwick, M.E.1

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