The pfam protein families database

Nucleic Acids Research

Volumn 30, Issue 1, 2002, Pages 276-280

  Bateman, Alex ^a   Birney, Ewan ^a   Cerruti, Lorenzo ^b   Durbin, Richard ^a   Etwiller, Laurence ^a   Eddy, Sean R ^c   Griffiths Jones, Sam ^a   Howe, Kevin L ^a   Marshall, Mhairi ^a   Sonnhammer, Erik L L ^d  

^a WELLCOME TRUST SANGER INSTITUTE   (United Kingdom)

^b SWISS INST FOR EXP CANCER RESEARCH   (Switzerland)

^c WASHINGTON UNIVERSITY SCHOOL OF MEDICINE   (United States)

^d KAROLINSKA INSTITUTE   (Sweden)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID; PFAM;

AMINO ACID SEQUENCE; ARTICLE; COMPUTER MODEL; COMPUTER PREDICTION; EMBL NUCLEOTIDE SEQUENCE DATABASE; INTERNET; PRIORITY JOURNAL; PROBABILITY; PROTEIN DOMAIN; PROTEIN FAMILY; PROTEIN STRUCTURE; SEQUENCE ALIGNMENT; SEQUENCE DATABASE; STRUCTURE ANALYSIS; SWEDEN; SWISS-PROT; TAXONOMY; UNITED KINGDOM; UNITED STATES;

EID: 0011542799     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/30.1.276     Document Type: Article

References (17)

1. Pfam: A comprehensive database of protein domain families based on seed alignments
2. The genome sequence of Drosophila melanogaster
3. Initial sequencing and analysis of the human genome
4. ProDom and ProDom-CG: Tools for protein domain analysis and whole genome comparisons
5. InterPro-an integrated documentation resource for protein families, domains and functional sites
6. SCOP: A structural classification of proteins database for the investigation of sequences and structures
7. The protein data bank: A computer-based archival file for macro-molecular structure
8. Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
9. Sequences with 'unusual' amino acid compositions
10. Predicting transmembrane protein topology with a hidden Markov model: Application to complete genomes
11. Machine learning approaches for the prediction of signal peptides and other protein sorting signals
12. Predicting coiled coils from protein sequences
13. The SWISS-PROT protein sequence data bank and its supplement TrEMBL in 1999
14. NIFAS: Visual analysis of domain evolution in proteins
15. SMART: Identification and annotation of domains from signalling and extracellular protein sequences
16. TIGRFAMs: A protein family resource for the functional identification of proteins
17. PDBsum: Summaries and analyses of PDB structures