메뉴 건너뛰기




Volumn 13, Issue 9, 2003, Pages 2178-2189

OrthoMCL: Identification of ortholog groups for eukaryotic genomes

Author keywords

[No Author keywords available]

Indexed keywords

PROTEOME;

EID: 0141519279     PISSN: 10889051     EISSN: None     Source Type: Journal    
DOI: 10.1101/gr.1224503     Document Type: Article
Times cited : (4712)

References (36)
  • 1
    • 0036327988 scopus 로고    scopus 로고
    • Clustering of proximal sequence space for the identification of protein families
    • Abascal, F. and Valencia, A. 2002. Clustering of proximal sequence space for the identification of protein families. Bioinformatics 18: 908-921.
    • (2002) Bioinformatics , vol.18 , pp. 908-921
    • Abascal, F.1    Valencia, A.2
  • 7
    • 0029006062 scopus 로고
    • The multiplicity of domains in proteins
    • Doolittle, R.F. 1995. The multiplicity of domains in proteins. Annu. Rev. Biochem. 64: 287-314.
    • (1995) Annu. Rev. Biochem. , vol.64 , pp. 287-314
    • Doolittle, R.F.1
  • 8
    • 0036529479 scopus 로고    scopus 로고
    • An efficient algorithm for large-scale detection of protein families
    • Enright, A.J., Van Dongen, S., and Ouzounis, C.A. 2002. An efficient algorithm for large-scale detection of protein families. Nucleic Acids Res. 30: 1575-1584.
    • (2002) Nucleic Acids Res. , vol.30 , pp. 1575-1584
    • Enright, A.J.1    Van Dongen, S.2    Ouzounis, C.A.3
  • 9
    • 0031444101 scopus 로고    scopus 로고
    • A plastid organelle as a drug target in apicomplexan parasites
    • Fichera, M.E. and Roos, D.S. 1997. A plastid organelle as a drug target in apicomplexan parasites. Nature 390: 407-409.
    • (1997) Nature , vol.390 , pp. 407-409
    • Fichera, M.E.1    Roos, D.S.2
  • 10
    • 0014800108 scopus 로고
    • Distinguishing homologous from analogous proteins
    • Fitch, W.M. 1970. Distinguishing homologous from analogous proteins. Syst. Zool. 19: 99-113.
    • (1970) Syst. Zool. , vol.19 , pp. 99-113
    • Fitch, W.M.1
  • 11
    • 0034178257 scopus 로고    scopus 로고
    • Homology, a personal view on some of the problems
    • Fitch, W.M. 2000. Homology, a personal view on some of the problems. Trends Genet. 16: 227-231.
    • (2000) Trends Genet. , vol.16 , pp. 227-231
    • Fitch, W.M.1
  • 12
    • 0036574857 scopus 로고    scopus 로고
    • A hot story from comparative genomics: Reverse gyrase is the only hyperthermophile-specific protein
    • Forterre, P. 2002. A hot story from comparative genomics: Reverse gyrase is the only hyperthermophile-specific protein. Trends Genet. 18: 236-237.
    • (2002) Trends Genet. , vol.18 , pp. 236-237
    • Forterre, P.1
  • 13
    • 0032728399 scopus 로고    scopus 로고
    • Searching for drug targets in microbial genomes
    • Galperin, M.Y. and Koonin, E.V. 1999. Searching for drug targets in microbial genomes. Curr. Opin. Biotechnol. 10: 571-578.
    • (1999) Curr. Opin. Biotechnol. , vol.10 , pp. 571-578
    • Galperin, M.Y.1    Koonin, E.V.2
  • 15
    • 0034887203 scopus 로고    scopus 로고
    • Creating the gene ontology resource: Design and implementation
    • The Gene Ontology Consortium
    • The Gene Ontology Consortium. 2001. Creating the gene ontology resource: Design and implementation. Genome Res. 11: 1425-1433.
    • (2001) Genome Res. , vol.11 , pp. 1425-1433
  • 16
    • 0035253864 scopus 로고    scopus 로고
    • A plastid segregation defect in the protozoan parasite Toxoplasma gondii
    • He, C.Y., Shaw, M.K., Pletcher, C.H., Striepen, B., Tilney, L.G., and Roos, D.S. 2001. A plastid segregation defect in the protozoan parasite Toxoplasma gondii. EMBO J. 20: 330-339.
    • (2001) EMBO J. , vol.20 , pp. 330-339
    • He, C.Y.1    Shaw, M.K.2    Pletcher, C.H.3    Striepen, B.4    Tilney, L.G.5    Roos, D.S.6
  • 21
    • 0031877893 scopus 로고    scopus 로고
    • Large-scale taxonomic profiling of eukaryotic model organisms: A comparison of orthologous proteins encoded by the human, fly, nematode, and yeast genomes
    • Mushegian, A.R., Garey, J.R., Martin, J., and Liu, L.X. 1998. Large-scale taxonomic profiling of eukaryotic model organisms: A comparison of orthologous proteins encoded by the human, fly, nematode, and yeast genomes. Genome Res. 8:590-598.
    • (1998) Genome Res. , vol.8 , pp. 590-598
    • Mushegian, A.R.1    Garey, J.R.2    Martin, J.3    Liu, L.X.4
  • 22
    • 0034530835 scopus 로고    scopus 로고
    • Using the COG database to improve gene recognition in complete genomes
    • Natale, D.A., Galperin, M.Y., Tatusov, R.L., and Koonin, E.V. 2000a. Using the COG database to improve gene recognition in complete genomes. Genetica 108: 9-17.
    • (2000) Genetica , vol.108 , pp. 9-17
    • Natale, D.A.1    Galperin, M.Y.2    Tatusov, R.L.3    Koonin, E.V.4
  • 23
    • 0034572821 scopus 로고    scopus 로고
    • Towards understanding the first genome sequence of a crenarchaeon by genome annotation using clusters of orthologous groups of proteins (COGs)
    • research0009.1-0009.19
    • Natale, D.A., Shankavaram, U.T., Galperin, M.Y., Wolf, Y.I., Aravind, I., and Koonin, E.V. 2000b. Towards understanding the first genome sequence of a crenarchaeon by genome annotation using clusters of orthologous groups of proteins (COGs). Genome Biol. 1:research0009.1-0009.19.
    • (2000) Genome Biol. , vol.1
    • Natale, D.A.1    Shankavaram, U.T.2    Galperin, M.Y.3    Wolf, Y.I.4    Aravind, I.5    Koonin, E.V.6
  • 24
    • 0033965855 scopus 로고    scopus 로고
    • The TIGR gene indices: Reconstruction and representation of expressed gene sequences
    • Quackenbush, J., Liang, F., Holt, I., Pertea, G., and Upton, J. 2000. The TIGR gene indices: Reconstruction and representation of expressed gene sequences. Nucleic Acids Res. 28: 141-145.
    • (2000) Nucleic Acids Res. , vol.28 , pp. 141-145
    • Quackenbush, J.1    Liang, F.2    Holt, I.3    Pertea, G.4    Upton, J.5
  • 26
    • 0035861990 scopus 로고    scopus 로고
    • Automatic clustering of orthologs and in-paralogs from pairwise species comparisons
    • Remm, M., Storm, C.E., and Sonnhammer, E.L. 2001. Automatic clustering of orthologs and in-paralogs from pairwise species comparisons. J. Mol. Biol. 314: 1041-1052.
    • (2001) J. Mol. Biol. , vol.314 , pp. 1041-1052
    • Remm, M.1    Storm, C.E.2    Sonnhammer, E.L.3
  • 27
    • 0032988608 scopus 로고    scopus 로고
    • The apicoplast as a potential therapeutic target in Toxoplasma and other apicomplexan parasites: Some additional thoughts
    • Roos, D.S. 1999. The apicoplast as a potential therapeutic target in Toxoplasma and other apicomplexan parasites: Some additional thoughts. Parasitol Today 15: 41.
    • (1999) Parasitol. Today , vol.15 , pp. 41
    • Roos, D.S.1
  • 31
    • 0030660581 scopus 로고    scopus 로고
    • A genomic perspective on protein families
    • Tatusov, R.L., Koonin, E.V., and Lipman, D.J. 1997. A genomic perspective on protein families. Science 278: 631-637.
    • (1997) Science , vol.278 , pp. 631-637
    • Tatusov, R.L.1    Koonin, E.V.2    Lipman, D.J.3
  • 32
    • 0033956060 scopus 로고    scopus 로고
    • The COG database: A tool for genome-scale analysis of protein functions and evolution
    • Tatusov, R.L., Galperin, M.Y., Natale, D.A., and Koonin, E.V. 2000. The COG database: A tool for genome-scale analysis of protein functions and evolution. Nucleic Acids Res. 28: 33-36.
    • (2000) Nucleic Acids Res. , vol.28 , pp. 33-36
    • Tatusov, R.L.1    Galperin, M.Y.2    Natale, D.A.3    Koonin, E.V.4
  • 34
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson, J.D., Higgins, D.G., and Gibson, T.J. 1994. CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22: 4673-4680.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 35
    • 0005924596 scopus 로고    scopus 로고
    • "Graph clustering by flow simulation"
    • Ph.D thesis, University of Utrecht, The Netherlands
    • Van Dongen, S. 2000. "Graph clustering by flow simulation." Ph.D thesis, University of Utrecht, The Netherlands.
    • (2000)
    • Van Dongen, S.1
  • 36
    • 0032835248 scopus 로고    scopus 로고
    • Human and nematode orthologs-Lessons from the analysis of 1800 human genes and the proteome of Caenorhabditis elegans
    • Wheelan, S.J., Boguski, M.S., Duret, L., and Makalowski, W. 1999. Human and nematode orthologs-Lessons from the analysis of 1800 human genes and the proteome of Caenorhabditis elegans. Gene 238: 163-170.
    • (1999) Gene , vol.238 , pp. 163-170
    • Wheelan, S.J.1    Boguski, M.S.2    Duret, L.3    Makalowski, W.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.