-
1
-
-
0035989633
-
Report of the ad hoc committee for the re-evaluation of the species definition in bacteriology
-
Stackebrandt, E. et al. Report of the ad hoc committee for the re-evaluation of the species definition in bacteriology. Int. J. Syst. Evol. Microbiol. 52, 1043-1047 (2002).
-
(2002)
Int. J. Syst. Evol. Microbiol.
, vol.52
, pp. 1043-1047
-
-
Stackebrandt, E.1
-
2
-
-
0029942146
-
Polyphasic taxonomy, a consensus approach to bacterial systematics
-
Vandamme, P. et al. Polyphasic taxonomy, a consensus approach to bacterial systematics. Microbiol. Rev. 60, 407-438 (1996).
-
(1996)
Microbiol. Rev.
, vol.60
, pp. 407-438
-
-
Vandamme, P.1
-
3
-
-
0028946084
-
Phylogenetic identification and in situ detection of individual microbial cells without cultivation
-
Amann, R. I., Ludwig, W. & Schleifer, K. H. Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol. Rev. 59, 143-169 (1995).
-
(1995)
Microbiol. Rev.
, vol.59
, pp. 143-169
-
-
Amann, R.I.1
Ludwig, W.2
Schleifer, K.H.3
-
4
-
-
0036407157
-
What are bacterial species?
-
Cohan, F. M. What are bacterial species? Annu. Rev. Microbiol. 56, 457-487 (2002).
-
(2002)
Annu. Rev. Microbiol.
, vol.56
, pp. 457-487
-
-
Cohan, F.M.1
-
5
-
-
0001925443
-
The Use of Ribosomal RNA in Reconstructing Evolutionary Relationships Among Bacteria
-
(eds Selander, R. K., Clark, A. G. & Whittam, T. S.) Ch. 1, (Sinauer Associates Inc., Sunderland)
-
Woese, C. R. The Use of Ribosomal RNA in Reconstructing Evolutionary Relationships Among Bacteria. in Evolution at the Molecular Level (eds Selander, R. K., Clark, A. G. & Whittam, T. S.) Ch. 1, 1-24 (Sinauer Associates Inc., Sunderland, 1991).
-
(1991)
Evolution at the Molecular Level
, pp. 1-24
-
-
Woese, C.R.1
-
6
-
-
0026585263
-
How close is close: 16S rRNA sequence identity may not be sufficient to guarantee species identity
-
Fox, G. E., Wisotzkey J. D. & Jurtshuk, P. Jr. How close is close: 16S rRNA sequence identity may not be sufficient to guarantee species identity. Int. J. Syst. Bacteriol. 42, 166-170 (1992).
-
(1992)
Int. J. Syst. Bacteriol.
, vol.42
, pp. 166-170
-
-
Fox, G.E.1
Wisotzkey, J.D.2
Jurtshuk Jr., P.3
-
7
-
-
0028028182
-
A place for DNA-DNA reassociation and 16S ribosomal-RNA sequence-analysis in the present species definition in bacteriology
-
Stackebrandt, E. & Goebel, B. M. A place for DNA-DNA reassociation and 16S ribosomal-RNA sequence-analysis in the present species definition in bacteriology. Int. J. Syst. Bacteriol. 44, 846-849 (1994).
-
(1994)
Int. J. Syst. Bacteriol.
, vol.44
, pp. 846-849
-
-
Stackebrandt, E.1
Goebel, B.M.2
-
8
-
-
0036898759
-
Prokaryotic evolution in light of gene transfer
-
Gogarten, J. P., Doolittle, W. F. & Lawrence, J. G. Prokaryotic evolution in light of gene transfer. Mol. Biol. Evol. 19, 2226-2238 (2002).
-
(2002)
Mol. Biol. Evol.
, vol.19
, pp. 2226-2238
-
-
Gogarten, J.P.1
Doolittle, W.F.2
Lawrence, J.G.3
-
9
-
-
2942545812
-
Intragenomic heterogeneity and intergenomic recombination among haloarchaeal rRNA genes
-
Boucher, Y., Douady, C. J., Sharma, A. K., Kamekura, M. & Doolittle, W. F. Intragenomic heterogeneity and intergenomic recombination among haloarchaeal rRNA genes. J. Bacteriol. 186, 3980-3990 (2004).
-
(2004)
J. Bacteriol.
, vol.186
, pp. 3980-3990
-
-
Boucher, Y.1
Douady, C.J.2
Sharma, A.K.3
Kamekura, M.4
Doolittle, W.F.5
-
10
-
-
13144252236
-
Multilocus sequence typing: A portable approach to the identification of clones within populations of pathogenic microorganisms
-
Maiden, M. C. J. et al. Multilocus sequence typing: a portable approach to the identification of clones within populations of pathogenic microorganisms. Proc. Natl Acad. Sci. USA 95, 3140-3145 (1998).
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 3140-3145
-
-
Maiden, M.C.J.1
-
11
-
-
3342926241
-
Multilocus sequence typing - What is resolved?
-
Cooper, J. E. & Feil, E. J. Multilocus sequence typing - what is resolved? Trends Microbiol. 12, 373-377 (2004).
-
(2004)
Trends Microbiol.
, vol.12
, pp. 373-377
-
-
Cooper, J.E.1
Feil, E.J.2
-
12
-
-
0345328128
-
Gene sequences useful for predicting relatedness of whole genomes in bacteria
-
Zeigler, D. R. Gene sequences useful for predicting relatedness of whole genomes in bacteria. Int. J. Syst. Evol. Microbiol. 53, 1893-1900 (2003).
-
(2003)
Int. J. Syst. Evol. Microbiol.
, vol.53
, pp. 1893-1900
-
-
Zeigler, D.R.1
-
13
-
-
3042826875
-
Identification and phylogenetic sorting of bacterial lineages with universally conserved genes and proteins
-
Santos, S. R. & Ochman, H. Identification and phylogenetic sorting of bacterial lineages with universally conserved genes and proteins. Environ. Microbiol. 6, 754-759 (2004).
-
(2004)
Environ. Microbiol.
, vol.6
, pp. 754-759
-
-
Santos, S.R.1
Ochman, H.2
-
14
-
-
25144436280
-
Phylogeny and molecular identification of vibrios based on multilocus sequence analysis
-
(in the press)
-
Thompson, F. L. et al. Phylogeny and molecular identification of vibrios based on multilocus sequence analysis. Appl. Environ. Microbiol. (in the press).
-
Appl. Environ. Microbiol.
-
-
Thompson, F.L.1
-
15
-
-
13244273719
-
A multigene approach to phylogenatic analysis using the genus Mycobacterium as a model
-
Devulder, G., Perouse de Montclos, M. & Flandrois, J. P. A multigene approach to phylogenatic analysis using the genus Mycobacterium as a model. Int. J. Syst. Evol. Microbiol. 55, 293-302 (2005).
-
(2005)
Int. J. Syst. Evol. Microbiol.
, vol.55
, pp. 293-302
-
-
Devulder, G.1
Perouse de Montclos, M.2
Flandrois, J.P.3
-
16
-
-
20444448503
-
Multilocus sequence typing for studying genetic relationships among Yersinia species
-
Kotetishvili, M. et al. Multilocus sequence typing for studying genetic relationships among Yersinia species. J. Clin. Microbiol. 43, 2674-2684 (2005).
-
(2005)
J. Clin. Microbiol.
, vol.43
, pp. 2674-2684
-
-
Kotetishvili, M.1
-
17
-
-
9244227067
-
Population structure and evolution of the Bacillus cereus group
-
Priest, F. G. , Barker, M., Baillie, L. W. J., Holmes, E. C. & Maiden, M. C. J. Population structure and evolution of the Bacillus cereus group. J. Bacteriol. 186, 7959-7970 (2004).
-
(2004)
J. Bacteriol.
, vol.186
, pp. 7959-7970
-
-
Priest, F.G.1
Barker, M.2
Baillie, L.W.J.3
Holmes, E.C.4
Maiden, M.C.J.5
-
18
-
-
0038628890
-
Multilocus sequence typing and evolutionary relationships among the causative agents of melioidosis and glanders, Burkholderia pseudomallei and Burkholderia mallei
-
Godoy, D. et al. Multilocus sequence typing and evolutionary relationships among the causative agents of melioidosis and glanders, Burkholderia pseudomallei and Burkholderia mallei. J. Clin. Microbiol. 41, 2068-2079 (2003).
-
(2003)
J. Clin. Microbiol.
, vol.41
, pp. 2068-2079
-
-
Godoy, D.1
-
19
-
-
0347513215
-
Gradual evolution in bacteria: Evidence from Bacillus systematics
-
Feldgarden, M., Byrd, N. & Cohan, F. M. Gradual evolution in bacteria: evidence from Bacillus systematics. Microbiology 149, 3565-3573 (2003).
-
(2003)
Microbiology
, vol.149
, pp. 3565-3573
-
-
Feldgarden, M.1
Byrd, N.2
Cohan, F.M.3
-
20
-
-
0037168538
-
Extensive mosaic structure revealed by the complete genome sequence of uropathogenic Escherichia coli
-
Welch, R. A. et al. Extensive mosaic structure revealed by the complete genome sequence of uropathogenic Escherichia coli. Proc. Natl Acad. Sci USA 99, 17020-17024 (2002).
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 17020-17024
-
-
Welch, R.A.1
-
21
-
-
0033764256
-
Ecology and evolution of bacterial microdiversity
-
Schloter, M., Lebuhn, M., Heulin, T. & Hartmann, A. Ecology and evolution of bacterial microdiversity. FEMS Microbiol. Rev. 24, 647-660 (2000).
-
(2000)
FEMS Microbiol. Rev.
, vol.24
, pp. 647-660
-
-
Schloter, M.1
Lebuhn, M.2
Heulin, T.3
Hartmann, A.4
-
22
-
-
0034462725
-
Carried meningococci in the Czech Republic: A diverse recombining population
-
Jolley, K. A. et al. Carried meningococci in the Czech Republic: a diverse recombining population. J. Clin. Microbiol. 38, 4492-4498 (2000).
-
(2000)
J. Clin. Microbiol.
, vol.38
, pp. 4492-4498
-
-
Jolley, K.A.1
-
23
-
-
0035082969
-
Multilocus sequence typing of Streptococcus pyogenes and the relationships between emm type and clone
-
Enright, M. C., Spratt, B. G., Kalia, A., Cross, J. H. & Bessen, D. E. Multilocus sequence typing of Streptococcus pyogenes and the relationships between emm type and clone. Infect Immun. 69, 2416-2427 (2001).
-
(2001)
Infect. Immun.
, vol.69
, pp. 2416-2427
-
-
Enright, M.C.1
Spratt, B.G.2
Kalia, A.3
Cross, J.H.4
Bessen, D.E.5
-
24
-
-
0030931719
-
Restricted structural gene polymorphism in the Mycobacterium tuberculosis complex indicates evolutionarily recent global dissemination
-
Sreevatsan, S. et al. Restricted structural gene polymorphism in the Mycobacterium tuberculosis complex indicates evolutionarily recent global dissemination. Proc. Natl Acad. Sci. USA 94, 9869-9874 (1997).
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 9869-9874
-
-
Sreevatsan, S.1
-
25
-
-
23944467456
-
Which species concept for pathogenic bacteria?: An e-debate
-
20 Jan (doi/0.1016/j.meegid.2004.03.004)
-
Godreuil, S., Cohan, F. M., Shah, H. & Tibayrenc, M. Which species concept for pathogenic bacteria?: an e-debate. Infect Genet. Evol. 20 Jan 2005 (doi/0.1016/j.meegid.2004.03.004).
-
(2005)
Infect. Genet. Evol.
-
-
Godreuil, S.1
Cohan, F.M.2
Shah, H.3
Tibayrenc, M.4
-
26
-
-
0002788119
-
-
(eds Howard, D. J. & Berlocher, S. H.) Ch. 5, (Oxford University Press, Oxford)
-
de Queiroz, K. in Endless Forms: Species and Speciation (eds Howard, D. J. & Berlocher, S. H.) Ch. 5, 57-75 (Oxford University Press, Oxford, 1998).
-
(1998)
Endless Forms: Species and Speciation
, pp. 57-75
-
-
de Queiroz, K.1
-
27
-
-
33645827233
-
Microbial Diversity in Hot Spring Cyanobacterial Mats: Pattern and Prediction
-
(eds Inskeep, W. P. & McDermott, T.) in the press (Thermal Biology Institute, Bozeman)
-
Ward, D. M. & Cohan, F. M. Microbial Diversity in Hot Spring Cyanobacterial Mats: Pattern and Prediction. in Geothermal Biology and Geochemistry in Yellowstone National Park (eds Inskeep, W. P. & McDermott, T.) in the press (Thermal Biology Institute, Bozeman).
-
Geothermal Biology and Geochemistry in Yellowstone National Park
-
-
Ward, D.M.1
Cohan, F.M.2
-
28
-
-
22144486947
-
Fuzzy species among recombinogenic bacteria
-
Hanage, W. P., Fraser, C. & Spratt, B. G. Fuzzy species among recombinogenic bacteria. BMC Biol. 3, 6 (2005).
-
(2005)
BMC Biol.
, vol.3
, pp. 6
-
-
Hanage, W.P.1
Fraser, C.2
Spratt, B.G.3
-
29
-
-
0035793056
-
Recombination within natural populations of pathogenic bacteria: Short-term empirical estimates and long-term phylogenetic consequences
-
Feil, E. J. et al. Recombination within natural populations of pathogenic bacteria: short-term empirical estimates and long-term phylogenetic consequences. Proc. Natl Acad. Sci. USA 98, 182-187 (2001).
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 182-187
-
-
Feil, E.J.1
-
30
-
-
33645424005
-
Databases and software for the comparative genomic study of collections of genomes
-
(in the press)
-
Field, D., Feil, E. J. & Wilson, G. Databases and software for the comparative genomic study of collections of genomes. Microbiology (in the press).
-
Microbiology
-
-
Field, D.1
Feil, E.J.2
Wilson, G.3
-
31
-
-
0026086561
-
Applications of cellular fatty acid analysis
-
Welch, D. F. Applications of cellular fatty acid analysis. Clin. Microbiol. Rev. 4, 422-438 (1991).
-
(1991)
Clin. Microbiol. Rev.
, vol.4
, pp. 422-438
-
-
Welch, D.F.1
-
32
-
-
0028834605
-
AFLP: A new technique for DNA fingerprinting
-
Vos, P. et al. AFLP: a new technique for DNA fingerprinting. Nucleic Acids Res. 23, 4407-4414 (1995).
-
(1995)
Nucleic Acids Res.
, vol.23
, pp. 4407-4414
-
-
Vos, P.1
-
33
-
-
0028314370
-
DNA fingerprinting of medically important microorganisms by use of PCR
-
van Belkum, A. DNA fingerprinting of medically important microorganisms by use of PCR. Clin. Microbiol. Rev. 7, 174-184 (1994).
-
(1994)
Clin. Microbiol. Rev.
, vol.7
, pp. 174-184
-
-
van Belkum, A.1
-
34
-
-
0041350484
-
Diversity and significance of Burkholderia species occupying diverse ecological niches
-
Coenye, T. & Vandamme, P. Diversity and significance of Burkholderia species occupying diverse ecological niches. Environ. Microbiol. 5, 719-729 (2003).
-
(2003)
Environ. Microbiol.
, vol.5
, pp. 719-729
-
-
Coenye, T.1
Vandamme, P.2
-
35
-
-
4644274415
-
Genornic plasticity of the causative agent of melioidosis, Burkholderia pseudomallei
-
Holden, M. T. G. et al. Genornic plasticity of the causative agent of melioidosis, Burkholderia pseudomallei. Proc. Natl Acad. Sci. USA 101, 14240-14245 (2004).
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 14240-14245
-
-
Holden, M.T.G.1
-
36
-
-
4644311317
-
Structural flexibility in the Burkholderia mallei genome
-
Nierman, W. C. et al. Structural flexibility in the Burkholderia mallei genome. Proc. Natl Acad. Sci. USA 101, 14246-14251 (2004).
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 14246-14251
-
-
Nierman, W.C.1
-
37
-
-
0031919229
-
Burkholderia thailandensis sp. nov., a Burkholderia pseudomallei-like species
-
Brett, P. J., Deshazer, D., & Woods, D. E. Burkholderia thailandensis sp. nov., a Burkholderia pseudomallei-like species. Int. J. Syst Bacteriol. 48, 317-320 (1998).
-
(1998)
Int. J. Syst. Bacteriol.
, vol.48
, pp. 317-320
-
-
Brett, P.J.1
Deshazer, D.2
Woods, D.E.3
-
38
-
-
0014750599
-
Nucleic acid similarities among Pseudomonas pseudomallei, Pseudomonas multivorans, and Actinobacillus mallei
-
Rogul, M., Brendle, J. J., Haalpala, D. K. & Alexander, A. D. Nucleic acid similarities among Pseudomonas pseudomallei, Pseudomonas multivorans, and Actinobacillus mallei. J. Bacteriol. 101, 827-835 (1970).
-
(1970)
J. Bacteriol.
, vol.101
, pp. 827-835
-
-
Rogul, M.1
Brendle, J.J.2
Haalpala, D.K.3
Alexander, A.D.4
-
39
-
-
0034091987
-
Burkholderia uboniae sp. nov., L-arabinose-assimilating but different from Burkholderia thailandensis and Burkholderia vietnamiensis
-
Yabuuchi, E. et al. Burkholderia uboniae sp. nov., L-arabinose-assimilating but different from Burkholderia thailandensis and Burkholderia vietnamiensis. Microbiol. Immunol. 44, 307-317 (2000).
-
(2000)
Microbiol. Immunol.
, vol.44
, pp. 307-317
-
-
Yabuuchi, E.1
-
40
-
-
23944436830
-
Concepts of Bacterial Biodiversity for the Age of Genomics
-
(eds Fraser, C. M., Read, T. D. & Nelson, K. E.) Ch. 11, (Humana Press, Totowa)
-
Cohan, F. M. Concepts of Bacterial Biodiversity for the Age of Genomics. in Microbial Genomes (eds Fraser, C. M., Read, T. D. & Nelson, K. E.) Ch. 11, 175-194 (Humana Press, Totowa, 2004),
-
(2004)
Microbial Genomes
, pp. 175-194
-
-
Cohan, F.M.1
-
41
-
-
0036598066
-
Gene transfer in bacteria: Speciation without species
-
Lawrence, J. G. Gene transfer in bacteria: speciation without species. Theor. Popul. Biol. 61, 449-460 (2002).
-
(2002)
Theor. Popul. Biol.
, vol.61
, pp. 449-460
-
-
Lawrence, J.G.1
-
42
-
-
0030870289
-
Discovery and classification of ecological diversity in the bacterial world: The role of DNA sequence data
-
Palys, T., Nakamura, L. K. & Cohan, F. M. Discovery and classification of ecological diversity in the bacterial world: the role of DNA sequence data. Int. J. Syst. Bacteriol. 47, 1145-1156 (1997).
-
(1997)
Int. J. Syst. Bacteriol.
, vol.47
, pp. 1145-1156
-
-
Palys, T.1
Nakamura, L.K.2
Cohan, F.M.3
-
43
-
-
0042743780
-
Geographical isolation in hot spring cyanobactera
-
Papke, R. T., Ramsing, N. B., Bateson, M. M. & Ward, D. M. Geographical isolation in hot spring cyanobactera. Environ. Microbiol. 5, 650-659 (2003).
-
(2003)
Environ. Microbiol.
, vol.5
, pp. 650-659
-
-
Papke, R.T.1
Ramsing, N.B.2
Bateson, M.M.3
Ward, D.M.4
-
44
-
-
13844309567
-
Neutral microepidemic evolution of bacterial pathogens?
-
Fraser, C., Hanage, W. P. & Spratt, B. G. Neutral microepidemic evolution of bacterial pathogens? Proc. Natl Acad. Sci. USA 102, 1968-1973 (2005).
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 1968-1973
-
-
Fraser, C.1
Hanage, W.P.2
Spratt, B.G.3
-
45
-
-
0001586683
-
Does recombination constrain neutral divergence among bacterial taxa
-
Cohan, F. M. Does recombination constrain neutral divergence among bacterial taxa. Evolution 49, 164-175 (1995).
-
(1995)
Evolution
, vol.49
, pp. 164-175
-
-
Cohan, F.M.1
-
46
-
-
4444308959
-
Anthrax molecular epidemiology and forensics: Using the appropriate marker for different evolutionary scales
-
Keim, P. et al. Anthrax molecular epidemiology and forensics: using the appropriate marker for different evolutionary scales. Infect. Genet. Evol. 4, 205-213 (2004).
-
(2004)
Infect. Genet. Evol.
, vol.4
, pp. 205-213
-
-
Keim, P.1
-
47
-
-
13544269277
-
Genomic and phylogenetic characterization of luminous bacteria symbiotic with the deep-sea fish Chlorophthalmus albatrossis (Aulopiformes: Chlorophthalmidae)
-
Dunlap, P. V. and Ast, J. C. Genomic and phylogenetic characterization of luminous bacteria symbiotic with the deep-sea fish Chlorophthalmus albatrossis (Aulopiformes: Chlorophthalmidae). Appl. Environ. Microbiol. 71, 930-939 (2005).
-
(2005)
Appl. Environ. Microbiol.
, vol.71
, pp. 930-939
-
-
Dunlap, P.V.1
Ast, J.C.2
|