-
1
-
-
43849089834
-
Microbial diversity and the genetic nature of microbial species
-
COI: 1:CAS:528:DC%2BD1cXlvFSisLY%3D, PID: 18461076
-
Achtman M, Wagner M (2008) Microbial diversity and the genetic nature of microbial species. Nat Rev Microbiol 6:431–440. doi:10.1038/nrmicro1872
-
(2008)
Nat Rev Microbiol
, vol.6
, pp. 431-440
-
-
Achtman, M.1
Wagner, M.2
-
2
-
-
84885137158
-
Multilocus sequence analysis of nectar pseudomonads reveals high genetic diversity and contrasting recombination patterns
-
PID: 24116076
-
Alvarez-Pérez S, de Vega C, Herrera CM (2013) Multilocus sequence analysis of nectar pseudomonads reveals high genetic diversity and contrasting recombination patterns. PLoS One 8:e75797. doi:10.1371/journal.pone.0075797
-
(2013)
PLoS One
, vol.8
, pp. 75797
-
-
Alvarez-Pérez, S.1
de Vega, C.2
Herrera, C.M.3
-
3
-
-
84893513704
-
Genotype to phenotype: identification of diagnostic vibrio phenotypes using whole genome sequences
-
COI: 1:CAS:528:DC%2BC2cXhtlClsr7K, PID: 24505074
-
Amaral GRS, Dias GM, Wellington-Oguri M et al (2014) Genotype to phenotype: identification of diagnostic vibrio phenotypes using whole genome sequences. Int J Syst Evol Microbiol 64:357–365. doi:10.1099/ijs.0.057927-0
-
(2014)
Int J Syst Evol Microbiol
, vol.64
, pp. 357-365
-
-
Amaral, G.R.S.1
Dias, G.M.2
Wellington-Oguri, M.3
-
4
-
-
77952891913
-
Digital DNA–DNA hybridization for microbial species delineation by means of genome-to-genome sequence comparison
-
PID: 21304684
-
Auch AF, von Jan M, Klenk H-P, Göker M (2010) Digital DNA–DNA hybridization for microbial species delineation by means of genome-to-genome sequence comparison. Stand Genomic Sci 2:117–134. doi:10.4056/sigs.531120
-
(2010)
Stand Genomic Sci
, vol.2
, pp. 117-134
-
-
Auch, A.F.1
von Jan, M.2
Klenk, H.-P.3
Göker, M.4
-
5
-
-
40549120596
-
The RAST server: rapid annotations using subsystems technology
-
PID: 18261238
-
Aziz RK, Bartels D, Best AA et al (2008) The RAST server: rapid annotations using subsystems technology. BMC Genomics 9:75. doi:10.1186/1471-2164-9-75
-
(2008)
BMC Genomics
, vol.9
, pp. 75
-
-
Aziz, R.K.1
Bartels, D.2
Best, A.A.3
-
6
-
-
84860543260
-
PhenoLink—a web-tool for linking phenotype to ~omics data for bacteria: application to gene-trait matching for Lactobacillus plantarum strains
-
COI: 1:CAS:528:DC%2BC38XovVeiur4%3D, PID: 22559291
-
Bayjanov JR, Molenaar D, Tzeneva V et al (2012) PhenoLink—a web-tool for linking phenotype to ~omics data for bacteria: application to gene-trait matching for Lactobacillus plantarum strains. BMC Genomics 13:170. doi:10.1186/1471-2164-13-170
-
(2012)
BMC Genomics
, vol.13
, pp. 170
-
-
Bayjanov, J.R.1
Molenaar, D.2
Tzeneva, V.3
-
7
-
-
0034942865
-
Universal trees based on large combined protein sequence data sets
-
COI: 1:CAS:528:DC%2BD3MXltFSmurw%3D, PID: 11431701
-
Brown JR, Douady CJ, Italia MJ et al (2001) Universal trees based on large combined protein sequence data sets. Nat Genet 28:281–285. doi:10.1038/90129
-
(2001)
Nat Genet
, vol.28
, pp. 281-285
-
-
Brown, J.R.1
Douady, C.J.2
Italia, M.J.3
-
8
-
-
84864250059
-
Global biogeography of SAR11 marine bacteria
-
PID: 22806143
-
Brown MV, Lauro FM, DeMaere MZ et al (2012) Global biogeography of SAR11 marine bacteria. Mol Syst Biol 8:595. doi:10.1038/msb.2012.28
-
(2012)
Mol Syst Biol
, vol.8
, pp. 595
-
-
Brown, M.V.1
Lauro, F.M.2
DeMaere, M.Z.3
-
9
-
-
84857470045
-
Patterns of gene flow define species of thermophilic Archaea
-
COI: 1:CAS:528:DC%2BC38XjsVaqu7Y%3D, PID: 22363207
-
Cadillo-Quiroz H, Didelot X, Held NL et al (2012) Patterns of gene flow define species of thermophilic Archaea. PLoS Biol 10:e1001265. doi:10.1371/journal.pbio.1001265
-
(2012)
PLoS Biol
, vol.10
, pp. 1001265
-
-
Cadillo-Quiroz, H.1
Didelot, X.2
Held, N.L.3
-
10
-
-
84856582558
-
Bacterial species may exist, metagenomics reveal
-
COI: 1:CAS:528:DC%2BC38XksVamsr0%3D, PID: 22151572
-
Caro-Quintero A, Konstantinidis KT (2012) Bacterial species may exist, metagenomics reveal. Environ Microbiol 14:347–355. doi:10.1111/j.1462-2920.2011.02668.x
-
(2012)
Environ Microbiol
, vol.14
, pp. 347-355
-
-
Caro-Quintero, A.1
Konstantinidis, K.T.2
-
11
-
-
84893495798
-
Integrating genomics into the taxonomy and systematics of the Bacteria and Archaea
-
PID: 24505069
-
Chun J, Rainey FA (2014) Integrating genomics into the taxonomy and systematics of the Bacteria and Archaea. Int J Syst Evol Microbiol 64:316–324. doi:10.1099/ijs.0.054171-0
-
(2014)
Int J Syst Evol Microbiol
, vol.64
, pp. 316-324
-
-
Chun, J.1
Rainey, F.A.2
-
12
-
-
0346882654
-
Extracting phylogenetic information from whole-genome sequencing projects: the lactic acid bacteria as a test case
-
COI: 1:CAS:528:DC%2BD3sXhtVWnsLzN, PID: 14663083
-
Coenye T, Vandamme P (2003) Extracting phylogenetic information from whole-genome sequencing projects: the lactic acid bacteria as a test case. Microbiology 149:3507–3517. doi:10.1099/mic.0.26515-0
-
(2003)
Microbiology
, vol.149
, pp. 3507-3517
-
-
Coenye, T.1
Vandamme, P.2
-
13
-
-
15944379273
-
Towards a prokaryotic genomic taxonomy
-
COI: 1:CAS:528:DC%2BD2MXivV2qtbs%3D, PID: 15808739
-
Coenye T, Gevers D, Van de Peer Y et al (2005) Towards a prokaryotic genomic taxonomy. FEMS Microbiol Rev 29:147–167
-
(2005)
FEMS Microbiol Rev
, vol.29
, pp. 147-167
-
-
Coenye, T.1
Gevers, D.2
Van de Peer, Y.3
-
14
-
-
0035527404
-
Bacterial species and speciation
-
COI: 1:STN:280:DC%2BD38zntVOmtg%3D%3D, PID: 12116650
-
Cohan F (2001) Bacterial species and speciation. Syst Biol 50:513–524
-
(2001)
Syst Biol
, vol.50
, pp. 513-524
-
-
Cohan, F.1
-
15
-
-
0014868747
-
Polyphasic taxonomy of the genus Vibrio: numerical taxonomy of Vibrio cholerae, Vibrio parahaemolyticus, and related Vibrio species
-
COI: 1:STN:280:DyaE3M%2FhsVeqtA%3D%3D, PID: 5473901
-
Colwell RR (1970) Polyphasic taxonomy of the genus Vibrio: numerical taxonomy of Vibrio cholerae, Vibrio parahaemolyticus, and related Vibrio species. J Bacteriol 104:410–433
-
(1970)
J Bacteriol
, vol.104
, pp. 410-433
-
-
Colwell, R.R.1
-
16
-
-
84896398453
-
Explaining microbial genomic diversity in light of evolutionary ecology
-
COI: 1:CAS:528:DC%2BC2cXjtlyitLo%3D, PID: 24590245
-
Cordero OX, Polz MF (2014) Explaining microbial genomic diversity in light of evolutionary ecology. Nat Rev Microbiol 12:263–273. doi:10.1038/nrmicro3218
-
(2014)
Nat Rev Microbiol
, vol.12
, pp. 263-273
-
-
Cordero, O.X.1
Polz, M.F.2
-
17
-
-
84870578736
-
Public good dynamics drive evolution of iron acquisition strategies in natural bacterioplankton populations
-
COI: 1:CAS:528:DC%2BC3sXjsVCjsQ%3D%3D, PID: 23169633
-
Cordero OX, Ventouras LA, DeLong EF, Polz MF (2012) Public good dynamics drive evolution of iron acquisition strategies in natural bacterioplankton populations. Proc Natl Acad Sci USA 109:20059–20064. doi:10.1073/pnas.1213344109
-
(2012)
Proc Natl Acad Sci USA
, vol.109
, pp. 20059-20064
-
-
Cordero, O.X.1
Ventouras, L.A.2
DeLong, E.F.3
Polz, M.F.4
-
18
-
-
84925470771
-
-
Cuevas DA, Garza D, Sanchez SE et al (2014) Elucidating genomic gaps using phenotypic profiles [v1; ref status: approved with reservations 1, ]. F1000Research 3:210
-
Cuevas DA, Garza D, Sanchez SE et al (2014) Elucidating genomic gaps using phenotypic profiles [v1; ref status: approved with reservations 1, http://f1000r.es/488]. F1000Research 3:210. doi:10.12688/f1000research.5140.1
-
-
-
-
19
-
-
0014752996
-
Reexamination of the association between melting point, buoyant density, and chemical base composition of deoxyribonucleic acid
-
PID: 5438045
-
De Ley J (1970) Reexamination of the association between melting point, buoyant density, and chemical base composition of deoxyribonucleic acid. J Bacteriol 101:738–754
-
(1970)
J Bacteriol
, vol.101
, pp. 738-754
-
-
De Ley, J.1
-
20
-
-
18244371073
-
Ernst Mayr and the modern concept of species
-
PID: 15851674
-
De Queiroz K (2005) Ernst Mayr and the modern concept of species. Proc Natl Acad Sci USA 102(Suppl1):6600–6607. doi:10.1073/pnas.0502030102
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 6600-6607
-
-
De Queiroz, K.1
-
21
-
-
77951498518
-
AMD biofilms: using model communities to study microbial evolution and ecological complexity in nature
-
PID: 20164865
-
Denef VJ, Mueller RS, Banfield JF (2010) AMD biofilms: using model communities to study microbial evolution and ecological complexity in nature. ISME J 4:599–610. doi:10.1038/ismej.2009.158
-
(2010)
ISME J
, vol.4
, pp. 599-610
-
-
Denef, V.J.1
Mueller, R.S.2
Banfield, J.F.3
-
22
-
-
84865231395
-
Transforming clinical microbiology with bacterial genome sequencing
-
COI: 1:CAS:528:DC%2BC38XhtFCrt7jE, PID: 22868263
-
Didelot X, Bowden R, Wilson DJ et al (2012) Transforming clinical microbiology with bacterial genome sequencing. Nat Rev Genet 13:601–612. doi:10.1038/nrg3226
-
(2012)
Nat Rev Genet
, vol.13
, pp. 601-612
-
-
Didelot, X.1
Bowden, R.2
Wilson, D.J.3
-
23
-
-
84907267775
-
Whole genome assembly of Klebsiella pneumoniae co-producing NDM-1 and OXA-232 carbapenemases using single-molecule, real-time sequencing
-
COI: 1:CAS:528:DC%2BC2cXhslSit7rO, PID: 25070096
-
Doi Y, Hazen TH, Boitano M, et al (2014) Whole genome assembly of Klebsiella pneumoniae co-producing NDM-1 and OXA-232 carbapenemases using single-molecule, real-time sequencing. Antimicrob Agents Chemother 58(10):5947–5953. doi:10.1128/AAC.03180-14
-
(2014)
Antimicrob Agents Chemother
, vol.58
, Issue.10
, pp. 5947-5953
-
-
Doi, Y.1
Hazen, T.H.2
Boitano, M.3
-
24
-
-
33845890829
-
Genomics and the bacterial species problem
-
PID: 17020593
-
Doolittle WF, Papke RT (2006) Genomics and the bacterial species problem. Genome Biol 7:116. doi:10.1186/gb-2006-7-9-116
-
(2006)
Genome Biol
, vol.7
, pp. 116
-
-
Doolittle, W.F.1
Papke, R.T.2
-
25
-
-
66049089612
-
On the origin of prokaryotic species
-
COI: 1:CAS:528:DC%2BD1MXlsFykur0%3D, PID: 19411599
-
Doolittle WF, Zhaxybayeva O (2009) On the origin of prokaryotic species. Genome Res 19:744–756. doi:10.1101/gr.086645.108
-
(2009)
Genome Res
, vol.19
, pp. 744-756
-
-
Doolittle, W.F.1
Zhaxybayeva, O.2
-
26
-
-
84882941123
-
Explaining microbial phenotypes on a genomic scale: GWAS for microbes
-
COI: 1:CAS:528:DC%2BC3sXhtlaisbbM, PID: 23625995
-
Dutilh BE, Backus L, Edwards RA et al (2013) Explaining microbial phenotypes on a genomic scale: GWAS for microbes. Brief Funct Genomics 12:366–380. doi:10.1093/bfgp/elt008
-
(2013)
Brief Funct Genomics
, vol.12
, pp. 366-380
-
-
Dutilh, B.E.1
Backus, L.2
Edwards, R.A.3
-
27
-
-
84906732045
-
Comparative genomics of 274 Vibrio cholerae genomes reveals mobile functions structuring three niche dimensions
-
PID: 25096633
-
Dutilh BE, Thompson CC, Vicente AC et al (2014) Comparative genomics of 274 Vibrio cholerae genomes reveals mobile functions structuring three niche dimensions. BMC Genomics 15:654. doi:10.1186/1471-2164-15-654
-
(2014)
BMC Genomics
, vol.15
, pp. 654
-
-
Dutilh, B.E.1
Thompson, C.C.2
Vicente, A.C.3
-
28
-
-
43849111915
-
Species numbers in bacteria
-
PID: 21874075
-
Dykhuizen D (2005) Species numbers in bacteria. Proc Calif Acad Sci 56:62–71
-
(2005)
Proc Calif Acad Sci
, vol.56
, pp. 62-71
-
-
Dykhuizen, D.1
-
29
-
-
84876854063
-
Comparative genomics of Wolbachia and the bacterial species concept
-
COI: 1:CAS:528:DC%2BC3sXnt1aqsLw%3D, PID: 23593012
-
Ellegaard KM, Klasson L, Näslund K et al (2013) Comparative genomics of Wolbachia and the bacterial species concept. PLoS Genet 9:e1003381. doi:10.1371/journal.pgen.1003381
-
(2013)
PLoS Genet
, vol.9
, pp. 1003381
-
-
Ellegaard, K.M.1
Klasson, L.2
Näslund, K.3
-
30
-
-
84925470770
-
The complete genome sequence of Escherichia coli EC958: a high quality reference sequence for the globally disseminated multidrug resistant E. coli O25b:H4-ST131 clone
-
PID: 25126841
-
Forde BM, Ben Zakour NL, Stanton-Cook M et al (2014) The complete genome sequence of Escherichia coli EC958: a high quality reference sequence for the globally disseminated multidrug resistant E. coli O25b:H4-ST131 clone. PLoS One 9:e104400. doi:10.1371/journal.pone.0104400
-
(2014)
PLoS One
, vol.9
, pp. 104400
-
-
Forde, B.M.1
Ben Zakour, N.L.2
Stanton-Cook, M.3
-
31
-
-
84901847186
-
Relating the metatranscriptome and metagenome of the human gut
-
PID: 24843156
-
Franzosa EA, Morgan XC, Segata N et al (2014) Relating the metatranscriptome and metagenome of the human gut. Proc Natl Acad Sci USA. doi:10.1073/pnas.1319284111
-
(2014)
Proc Natl Acad Sci USA
-
-
Franzosa, E.A.1
Morgan, X.C.2
Segata, N.3
-
32
-
-
33846625056
-
Recombination and the nature of bacterial speciation
-
COI: 1:CAS:528:DC%2BD2sXotFChsg%3D%3D, PID: 17255503
-
Fraser C, Hanage WP, Spratt BG (2007) Recombination and the nature of bacterial speciation. Science 315:476–480. doi:10.1126/science.1127573.Recombination
-
(2007)
Science
, vol.315
, pp. 476-480
-
-
Fraser, C.1
Hanage, W.P.2
Spratt, B.G.3
-
33
-
-
59849086092
-
The bacterial species challenge: ecological diversity
-
COI: 1:CAS:528:DC%2BD1MXhtlert7w%3D, PID: 19197054
-
Fraser C, Alm EJ, Polz MF et al (2009) The bacterial species challenge: ecological diversity. Science 323:741–746
-
(2009)
Science
, vol.323
, pp. 741-746
-
-
Fraser, C.1
Alm, E.J.2
Polz, M.F.3
-
34
-
-
23944437942
-
Re-evaluating prokaryotic species
-
COI: 1:CAS:528:DC%2BD2MXps1Kjtbc%3D, PID: 16138101
-
Gevers D, Cohan FM, Lawrence JG et al (2005) Re-evaluating prokaryotic species. Nat Rev Microbiol 3:733–739
-
(2005)
Nat Rev Microbiol
, vol.3
, pp. 733-739
-
-
Gevers, D.1
Cohan, F.M.2
Lawrence, J.G.3
-
35
-
-
23844446418
-
Genome streamlining in a cosmopolitan oceanic bacterium
-
COI: 1:CAS:528:DC%2BD2MXnvFyls7k%3D, PID: 16109880
-
Giovannoni SJ, Tripp HJ, Givan S et al (2005) Genome streamlining in a cosmopolitan oceanic bacterium. Science 309:1242–1245. doi:10.1126/science.1114057
-
(2005)
Science
, vol.309
, pp. 1242-1245
-
-
Giovannoni, S.J.1
Tripp, H.J.2
Givan, S.3
-
36
-
-
77952697494
-
Comparative genomic analysis reveals evidence of two novel Vibrio species closely related to V. cholerae
-
PID: 20507608
-
Haley BJ, Grim CJ, Hasan NA et al (2010) Comparative genomic analysis reveals evidence of two novel Vibrio species closely related to V. cholerae. BMC Microbiol 10:154. doi:10.1186/1471-2180-10-154
-
(2010)
BMC Microbiol
, vol.10
, pp. 154
-
-
Haley, B.J.1
Grim, C.J.2
Hasan, N.A.3
-
37
-
-
84876344575
-
Fuzzy species revisited
-
PID: 23587266
-
Hanage WP (2013) Fuzzy species revisited. BMC Biol 11:41. doi:10.1186/1741-7007-11-41
-
(2013)
BMC Biol
, vol.11
, pp. 41
-
-
Hanage, W.P.1
-
38
-
-
22144486947
-
Fuzzy species among recombinogenic bacteria
-
PID: 15752428
-
Hanage WP, Fraser C, Spratt BG (2005) Fuzzy species among recombinogenic bacteria. BMC Biol 3:6. doi:10.1186/1741-7007-3-6
-
(2005)
BMC Biol
, vol.3
, pp. 6
-
-
Hanage, W.P.1
Fraser, C.2
Spratt, B.G.3
-
39
-
-
84891763315
-
MetaRef: a pan-genomic database for comparative and community microbial genomics
-
COI: 1:CAS:528:DC%2BC2cXos1Kr, PID: 24203705
-
Huang K, Brady A, Mahurkar A et al (2014) MetaRef: a pan-genomic database for comparative and community microbial genomics. Nucleic Acids Res 42:D617–D624. doi:10.1093/nar/gkt1078
-
(2014)
Nucleic Acids Res
, vol.42
, pp. 617-624
-
-
Huang, K.1
Brady, A.2
Mahurkar, A.3
-
40
-
-
44449178480
-
Resource partitioning and sympatric differentiation among closely related bacterioplankton
-
COI: 1:CAS:528:DC%2BD1cXmtVKnsLY%3D, PID: 18497299
-
Hunt DE, David LA, Gevers D et al (2008) Resource partitioning and sympatric differentiation among closely related bacterioplankton. Science 320:1081–1085. doi:10.1126/science.1157890
-
(2008)
Science
, vol.320
, pp. 1081-1085
-
-
Hunt, D.E.1
David, L.A.2
Gevers, D.3
-
41
-
-
84856587704
-
Prokaryotic taxonomy in the sequencing era—the polyphasic approach revisited
-
PID: 22040009
-
Kämpfer P, Glaeser SP (2012) Prokaryotic taxonomy in the sequencing era—the polyphasic approach revisited. Environ Microbiol 14:291–317. doi:10.1111/j.1462-2920.2011.02615.x
-
(2012)
Environ Microbiol
, vol.14
, pp. 291-317
-
-
Kämpfer, P.1
Glaeser, S.P.2
-
42
-
-
0029060923
-
Dinucleotide relative abundance extremes: a genomic signature
-
COI: 1:CAS:528:DyaK2MXmvVahtLY%3D, PID: 7482779
-
Karlin S, Burge C (1995) Dinucleotide relative abundance extremes: a genomic signature. Trends Genet 11:283–290
-
(1995)
Trends Genet
, vol.11
, pp. 283-290
-
-
Karlin, S.1
Burge, C.2
-
43
-
-
27244436714
-
Expansion of the BioCyc collection of pathway/genome databases to 160 genomes
-
COI: 1:CAS:528:DC%2BD2MXht1entLvK, PID: 16246909
-
Karp PD, Ouzounis CA, Moore-Kochlacs C et al (2005) Expansion of the BioCyc collection of pathway/genome databases to 160 genomes. Nucleic Acids Res 33:6083–6089. doi:10.1093/nar/gki892
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 6083-6089
-
-
Karp, P.D.1
Ouzounis, C.A.2
Moore-Kochlacs, C.3
-
44
-
-
84899559579
-
Single-cell genomics reveals hundreds of coexisting subpopulations in wild Prochlorococcus
-
COI: 1:CAS:528:DC%2BC2cXmsFWmtLo%3D, PID: 24763590
-
Kashtan N, Roggensack SE, Rodrigue S et al (2014) Single-cell genomics reveals hundreds of coexisting subpopulations in wild Prochlorococcus. Science 344:416–420. doi:10.1126/science.1248575
-
(2014)
Science
, vol.344
, pp. 416-420
-
-
Kashtan, N.1
Roggensack, S.E.2
Rodrigue, S.3
-
45
-
-
77952889628
-
En route to a genome-based classification of Archaea and Bacteria?
-
COI: 1:CAS:528:DC%2BC3cXhtVWmtbnN, PID: 20409658
-
Klenk H-P, Göker M (2010) En route to a genome-based classification of Archaea and Bacteria? Syst Appl Microbiol 33:175–182. doi:10.1016/j.syapm.2010.03.003
-
(2010)
Syst Appl Microbiol
, vol.33
, pp. 175-182
-
-
Klenk, H.-P.1
Göker, M.2
-
46
-
-
53849115701
-
Genomic patterns of recombination, clonal divergence and environment in marine microbial populations
-
COI: 1:CAS:528:DC%2BD1cXhtlOlsbjI, PID: 18580971
-
Konstantinidis KT, DeLong EF (2008) Genomic patterns of recombination, clonal divergence and environment in marine microbial populations. ISME J 2:1052–1065. doi:10.1038/ismej.2008.62
-
(2008)
ISME J
, vol.2
, pp. 1052-1065
-
-
Konstantinidis, K.T.1
DeLong, E.F.2
-
47
-
-
84885927619
-
Defining taxonomic ranks
-
Konstantinidis KT, Stackebrandt E (2013) Defining taxonomic ranks. In: Rosenberg E, DeLong EF, Lory S, et al (eds) Prokaryotes (4th ed). Prokaryotic Biol. Symbiotic Assoc., 4th edn p 229
-
(2013)
Prokaryotes (4th ed). Prokaryotic Biol. Symbiotic Assoc., 4th edn
, pp. 229
-
-
Konstantinidis, K.T.1
Stackebrandt, E.2
Rosenberg, E.3
DeLong, E.F.4
Lory, S.5
-
48
-
-
24944587193
-
Towards a genome-based taxonomy for prokaryotes
-
COI: 1:CAS:528:DC%2BD2MXhtVWkt77I, PID: 16159757
-
Konstantinidis KT, Tiedje JM (2005) Towards a genome-based taxonomy for prokaryotes. J Bacteriol 187:6258–6264. doi:10.1128/JB.187.18.6258
-
(2005)
J Bacteriol
, vol.187
, pp. 6258-6264
-
-
Konstantinidis, K.T.1
Tiedje, J.M.2
-
49
-
-
0032873141
-
Genomes OnLine Database (GOLD 1.0): a monitor of complete and ongoing genome projects world-wide
-
COI: 1:CAS:528:DyaK1MXnt1CksL8%3D, PID: 10498782
-
Kyrpides NC (1999) Genomes OnLine Database (GOLD 1.0): a monitor of complete and ongoing genome projects world-wide. Bioinformatics 15:773–774
-
(1999)
Bioinformatics
, vol.15
, pp. 773-774
-
-
Kyrpides, N.C.1
-
50
-
-
0034283229
-
Intraspecies variation in bacterial genomes: the need for a species genome concept
-
COI: 1:STN:280:DC%2BD3cvptleksA%3D%3D, PID: 10989306
-
Lan R, Reeves PR (2000) Intraspecies variation in bacterial genomes: the need for a species genome concept. Trends Microbiol 8:396–401
-
(2000)
Trends Microbiol
, vol.8
, pp. 396-401
-
-
Lan, R.1
Reeves, P.R.2
-
51
-
-
84899530047
-
Benchmarking of methods for genomic taxonomy
-
PID: 24574292
-
Larsen MV, Cosentino S, Lukjancenko O et al (2014) Benchmarking of methods for genomic taxonomy. J Clin Microbiol 52:1529–1539. doi:10.1128/JCM.02981-13
-
(2014)
J Clin Microbiol
, vol.52
, pp. 1529-1539
-
-
Larsen, M.V.1
Cosentino, S.2
Lukjancenko, O.3
-
52
-
-
84905730165
-
An integrated catalog of reference genes in the human gut microbiome
-
Li J, Jia H, Cai X et al (2014) An integrated catalog of reference genes in the human gut microbiome. Nat Biotechnol. doi:10.1038/nbt.2942
-
(2014)
Nat Biotechnol
-
-
Li, J.1
Jia, H.2
Cai, X.3
-
53
-
-
49649114608
-
Hybridization, ecological races and the nature of species: empirical evidence for the ease of speciation
-
PID: 18579473
-
Mallet J (2008) Hybridization, ecological races and the nature of species: empirical evidence for the ease of speciation. Philos Trans R Soc Lond B Biol Sci 363:2971–2986. doi:10.1098/rstb.2008.0081
-
(2008)
Philos Trans R Soc Lond B Biol Sci
, vol.363
, pp. 2971-2986
-
-
Mallet, J.1
-
54
-
-
33644873697
-
The integrated microbial genomes (IMG) system
-
COI: 1:CAS:528:DC%2BD28XisFOgug%3D%3D, PID: 16381883
-
Markowitz VM, Korzeniewski F, Palaniappan K et al (2006) The integrated microbial genomes (IMG) system. Nucleic Acids Res 34:D344–D348. doi:10.1093/nar/gkj024
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 344-348
-
-
Markowitz, V.M.1
Korzeniewski, F.2
Palaniappan, K.3
-
55
-
-
84891820094
-
IMG 4 version of the integrated microbial genomes comparative analysis system
-
COI: 1:CAS:528:DC%2BC2cXos1Sr, PID: 24165883
-
Markowitz VM, Chen I-MA, Palaniappan K et al (2014) IMG 4 version of the integrated microbial genomes comparative analysis system. Nucleic Acids Res 42:D560–D567. doi:10.1093/nar/gkt963
-
(2014)
Nucleic Acids Res
, vol.42
, pp. 560-567
-
-
Markowitz, V.M.1
Chen, I.-M.A.2
Palaniappan, K.3
-
57
-
-
84905736539
-
High-resolution metagenomics
-
COI: 1:CAS:528:DC%2BC2cXht12ms7bJ, PID: 25101744
-
Mick E, Sorek R (2014) High-resolution metagenomics. Nat Biotechnol 32:750–751. doi:10.1038/nbt.2962
-
(2014)
Nat Biotechnol
, vol.32
, pp. 750-751
-
-
Mick, E.1
Sorek, R.2
-
58
-
-
84903842081
-
Photobacterium sanctipauli sp. nov. isolated from bleached Madracis decactis (Scleractinia) in the St Peter & St Paul Archipelago, Mid-Atlantic Ridge, Brazil
-
PID: 25024905
-
Moreira APB, Duytschaever G, Tonon LAC et al (2014a) Photobacterium sanctipauli sp. nov. isolated from bleached Madracis decactis (Scleractinia) in the St Peter & St Paul Archipelago, Mid-Atlantic Ridge, Brazil. Peer J 2:e427. doi:10.7717/peerj.427
-
(2014)
Peer J
, vol.2
, pp. 427
-
-
Moreira, A.P.B.1
Duytschaever, G.2
Tonon, L.A.C.3
-
59
-
-
84926659162
-
Vibrio madracius sp. nov. isolated from Madracis decactis (Scleractinia) in St Peter & St Paul Archipelago, Mid-Atlantic Ridge, Brazil
-
Moreira APB, Duytschaever G, Tonon LAC et al (2014b) Vibrio madracius sp. nov. isolated from Madracis decactis (Scleractinia) in St Peter & St Paul Archipelago, Mid-Atlantic Ridge, Brazil. Curr Microbiol 2:e427. doi:10.1007/s00284-014-0600-1
-
(2014)
Curr Microbiol
, vol.2
, pp. 427
-
-
Moreira, A.P.B.1
Duytschaever, G.2
Tonon, L.A.C.3
-
60
-
-
33644749286
-
Recombination in Thermotoga: implications for species concepts and biogeography
-
PID: 16322518
-
Nesbø CL, Dlutek M, Doolittle WF (2006) Recombination in Thermotoga: implications for species concepts and biogeography. Genetics 172:759–769. doi:10.1534/genetics.105.049312
-
(2006)
Genetics
, vol.172
, pp. 759-769
-
-
Nesbø, C.L.1
Dlutek, M.2
Doolittle, W.F.3
-
61
-
-
84905730761
-
Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes
-
Nielsen HB, Almeida M, Juncker AS et al (2014) Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes. Nat Biotechnol. doi:10.1038/nbt.2939
-
(2014)
Nat Biotechnol
-
-
Nielsen, H.B.1
Almeida, M.2
Juncker, A.S.3
-
62
-
-
84891804612
-
The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)
-
COI: 1:CAS:528:DC%2BC2cXos1el, PID: 24293654
-
Overbeek R, Olson R, Pusch GD et al (2014) The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST). Nucleic Acids Res 42:D206–D214. doi:10.1093/nar/gkt1226
-
(2014)
Nucleic Acids Res
, vol.42
, pp. 206-214
-
-
Overbeek, R.1
Olson, R.2
Pusch, G.D.3
-
63
-
-
84859165788
-
The Genomes OnLine Database (GOLD) v. 4: status of genomic and metagenomic projects and their associated metadata
-
COI: 1:CAS:528:DC%2BC3MXhs12hur%2FJ, PID: 22135293
-
Pagani I, Liolios K, Jansson J et al (2012) The Genomes OnLine Database (GOLD) v. 4: status of genomic and metagenomic projects and their associated metadata. Nucleic Acids Res 40:D571–D579. doi:10.1093/nar/gkr1100
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 571-579
-
-
Pagani, I.1
Liolios, K.2
Jansson, J.3
-
64
-
-
33751234806
-
Patterns and mechanisms of genetic and phenotypic differentiation in marine microbes
-
PID: 17062417
-
Polz MF, Hunt DE, Preheim SP, Weinreich DM (2006) Patterns and mechanisms of genetic and phenotypic differentiation in marine microbes. Philos Trans R Soc Lond B Biol Sci 361:2009–2021. doi:10.1098/rstb.2006.1928
-
(2006)
Philos Trans R Soc Lond B Biol Sci
, vol.361
, pp. 2009-2021
-
-
Polz, M.F.1
Hunt, D.E.2
Preheim, S.P.3
Weinreich, D.M.4
-
65
-
-
84875273263
-
Horizontal gene transfer and the evolution of bacterial and archaeal population structure
-
COI: 1:CAS:528:DC%2BC3sXovV2iug%3D%3D, PID: 23332119
-
Polz MF, Alm EJ, Hanage WP (2013) Horizontal gene transfer and the evolution of bacterial and archaeal population structure. Trends Genet 29:170–175. doi:10.1016/j.tig.2012.12.006
-
(2013)
Trends Genet
, vol.29
, pp. 170-175
-
-
Polz, M.F.1
Alm, E.J.2
Hanage, W.P.3
-
66
-
-
82955240516
-
Merging taxonomy with ecological population prediction in a case study of Vibrionaceae
-
COI: 1:CAS:528:DC%2BC3MXhsVKnu77P, PID: 21873482
-
Preheim SP, Timberlake S, Polz MF (2011) Merging taxonomy with ecological population prediction in a case study of Vibrionaceae. Appl Environ Microbiol 77:7195–7206. doi:10.1128/AEM.00665-11
-
(2011)
Appl Environ Microbiol
, vol.77
, pp. 7195-7206
-
-
Preheim, S.P.1
Timberlake, S.2
Polz, M.F.3
-
67
-
-
84893456850
-
A polyphasic strategy incorporating genomic data for the taxonomic description of novel bacterial species
-
PID: 24505076
-
Ramasamy D, Mishra AK, Lagier J-C et al (2014) A polyphasic strategy incorporating genomic data for the taxonomic description of novel bacterial species. Int J Syst Evol Microbiol 64:384–391. doi:10.1099/ijs.0.057091-0
-
(2014)
Int J Syst Evol Microbiol
, vol.64
, pp. 384-391
-
-
Ramasamy, D.1
Mishra, A.K.2
Lagier, J.-C.3
-
68
-
-
84881138595
-
Insights into the phylogeny and coding potential of microbial dark matter
-
COI: 1:CAS:528:DC%2BC3sXhtFShurnE, PID: 23851394
-
Rinke C, Schwientek P, Sczyrba A et al (2013) Insights into the phylogeny and coding potential of microbial dark matter. Nature 499:431–437. doi:10.1038/nature12352
-
(2013)
Nature
, vol.499
, pp. 431-437
-
-
Rinke, C.1
Schwientek, P.2
Sczyrba, A.3
-
69
-
-
70350180460
-
Explaining microbial population genomics through phage predation
-
COI: 1:CAS:528:DC%2BD1MXht1Kqsb7K, PID: 19834481
-
Rodriguez-Valera F, Martin-Cuadrado A-B, Rodriguez-Brito B et al (2009) Explaining microbial population genomics through phage predation. Nat Rev Microbiol 7:828–836. doi:10.1038/nrmicro2235
-
(2009)
Nat Rev Microbiol
, vol.7
, pp. 828-836
-
-
Rodriguez-Valera, F.1
Martin-Cuadrado, A.-B.2
Rodriguez-Brito, B.3
-
70
-
-
0036330981
-
The phage proteomic tree: a genome-based taxonomy for phage
-
COI: 1:CAS:528:DC%2BD38XlvV2gs7g%3D, PID: 12142423
-
Rohwer F, Edwards R (2002) The phage proteomic tree: a genome-based taxonomy for phage. J Bacteriol 184:4529–4535. doi:10.1128/JB.184.16.4529
-
(2002)
J Bacteriol
, vol.184
, pp. 4529-4535
-
-
Rohwer, F.1
Edwards, R.2
-
71
-
-
14844326483
-
Computational prediction of human metabolic pathways from the complete human genome
-
PID: 15642094
-
Romero P, Wagg J, Green ML et al (2005) Computational prediction of human metabolic pathways from the complete human genome. Genome Biol 6:R2. doi:10.1186/gb-2004-6-1-r2
-
(2005)
Genome Biol
, vol.6
, pp. 2
-
-
Romero, P.1
Wagg, J.2
Green, M.L.3
-
72
-
-
84856571925
-
Towards a taxonomy of Bacteria and Archaea based on interactive and cumulative data repositories
-
PID: 21958017
-
Rosselló-Móra R (2012) Towards a taxonomy of Bacteria and Archaea based on interactive and cumulative data repositories. Environ Microbiol 14:318–334. doi:10.1111/j.1462-2920.2011.02599.x
-
(2012)
Environ Microbiol
, vol.14
, pp. 318-334
-
-
Rosselló-Móra, R.1
-
73
-
-
0035174578
-
The species concept for prokaryotes
-
PID: 11152940
-
Rosselló-Mora R, Amann R (2001) The species concept for prokaryotes. FEMS Microbiol Rev 25:39–67
-
(2001)
FEMS Microbiol Rev
, vol.25
, pp. 39-67
-
-
Rosselló-Mora, R.1
Amann, R.2
-
74
-
-
84910047591
-
Phylogeny of the class Actinobacteria revisited in the light of complete genomes. The orders ‘Frankiales’ and Micrococcales should be split into coherent entities: proposal of Frankiales ord. nov., Geodermatophilales ord. nov., Acidothermales ord. nov. and Nakamurellales ord. nov
-
Sen A, Daubin V, Abrouk D, Gifford I, Berry AM, Normand P (2014) Phylogeny of the class Actinobacteria revisited in the light of complete genomes. The orders ‘Frankiales’ and Micrococcales should be split into coherent entities: proposal of Frankiales ord. nov., Geodermatophilales ord. nov., Acidothermales ord. nov. and Nakamurellales ord. nov. Int J Syst Evol Microbiol 64:3821–3832. doi:10.1099/ijs.0.063966-0
-
(2014)
Int J Syst Evol Microbiol
, vol.64
, pp. 3821-3832
-
-
Sen, A.1
Daubin, V.2
Abrouk, D.3
Gifford, I.4
Berry, A.M.5
Normand, P.6
-
75
-
-
84899979623
-
Ordering microbial diversity into ecologically and genetically cohesive units
-
COI: 1:CAS:528:DC%2BC2cXkt1Smt7k%3D, PID: 24630527
-
Shapiro BJ, Polz MF (2014) Ordering microbial diversity into ecologically and genetically cohesive units. Trends Microbiol 22:235–247. doi:10.1016/j.tim.2014.02.006
-
(2014)
Trends Microbiol
, vol.22
, pp. 235-247
-
-
Shapiro, B.J.1
Polz, M.F.2
-
76
-
-
84859499489
-
Population genomics of early events in the ecological differentiation of bacteria
-
COI: 1:CAS:528:DC%2BC38XkvV2rs7w%3D, PID: 22491847
-
Shapiro BJ, Friedman J, Cordero OX et al (2012) Population genomics of early events in the ecological differentiation of bacteria. Science 336:48–51. doi:10.1126/science.1218198
-
(2012)
Science
, vol.336
, pp. 48-51
-
-
Shapiro, B.J.1
Friedman, J.2
Cordero, O.X.3
-
77
-
-
84906972652
-
Complete genome sequence of Enterococcus mundtii QU 25, an efficient l-(+)-Lactic Acid-producing bacterium
-
COI: 1:CAS:528:DC%2BC2cXhtlynurnM, PID: 24568933
-
Shiwa Y, Yanase H, Hirose Y et al (2014) Complete genome sequence of Enterococcus mundtii QU 25, an efficient l-(+)-Lactic Acid-producing bacterium. DNA Res 21:369–377. doi:10.1093/dnares/dsu003
-
(2014)
DNA Res
, vol.21
, pp. 369-377
-
-
Shiwa, Y.1
Yanase, H.2
Hirose, Y.3
-
79
-
-
78149465473
-
Standard operating procedure for computing pangenome trees
-
PID: 21304685
-
Snipen L, Ussery DW (2010) Standard operating procedure for computing pangenome trees. Stand Genomic Sci 2:135–141. doi:10.4056/sigs.38923
-
(2010)
Stand Genomic Sci
, vol.2
, pp. 135-141
-
-
Snipen, L.1
Ussery, D.W.2
-
80
-
-
33947302827
-
Taxonomic parameters revisited: tarnished gold standards
-
Stackebrandt E, Ebers J (2006) Taxonomic parameters revisited: tarnished gold standards. Microbiol Today 33:152–155
-
(2006)
Microbiol Today
, vol.33
, pp. 152-155
-
-
Stackebrandt, E.1
Ebers, J.2
-
81
-
-
0035989633
-
Report of the ad hoc committee for the re-evaluation of the species definition in bacteriology
-
COI: 1:CAS:528:DC%2BD38XkslCqs7g%3D, PID: 12054223
-
Stackebrandt E, Frederiksen W, Garrity GM et al (2002) Report of the ad hoc committee for the re-evaluation of the species definition in bacteriology. Int J Syst Evol Microbiol 52:1043–1047. doi:10.1099/ijs.0.02360-0.02360
-
(2002)
Int J Syst Evol Microbiol
, vol.52
, pp. 1043-1047
-
-
Stackebrandt, E.1
Frederiksen, W.2
Garrity, G.M.3
-
82
-
-
84903982587
-
Deposit of microbial strains in public service collections as part of the publication process to underpin good practice in science
-
PID: 24826375
-
Stackebrandt E, Smith D, Casaregola S et al (2014) Deposit of microbial strains in public service collections as part of the publication process to underpin good practice in science. Springerplus 3:208. doi:10.1186/2193-1801-3-208
-
(2014)
Springerplus
, vol.3
, pp. 208
-
-
Stackebrandt, E.1
Smith, D.2
Casaregola, S.3
-
83
-
-
33751258603
-
The bacterial species dilemma and the genomic–phylogenetic species concept
-
PID: 17062409
-
Staley JT (2006) The bacterial species dilemma and the genomic–phylogenetic species concept. Philos Trans R Soc Lond B Biol Sci 361:1899–1909. doi:10.1098/rstb.2006.1914
-
(2006)
Philos Trans R Soc Lond B Biol Sci
, vol.361
, pp. 1899-1909
-
-
Staley, J.T.1
-
84
-
-
70350244424
-
Universal species concept: Pipe dream or a step toward unifying biology?
-
COI: 1:CAS:528:DC%2BD1MXht1yktbnF, PID: 19779746
-
Staley JT (2009) Universal species concept: Pipe dream or a step toward unifying biology? J Ind Microbiol Biotechnol 36:1331–1336. doi:10.1007/s10295-009-0642-8
-
(2009)
J Ind Microbiol Biotechnol
, vol.36
, pp. 1331-1336
-
-
Staley, J.T.1
-
85
-
-
84867897736
-
On the fitness of microbial taxonomy
-
COI: 1:CAS:528:DC%2BC38XhtlSkt7fO, PID: 22959411
-
Tamames J, Rosselló-Móra R (2012) On the fitness of microbial taxonomy. Trends Microbiol 20:514–516. doi:10.1016/j.tim.2012.08.012
-
(2012)
Trends Microbiol
, vol.20
, pp. 514-516
-
-
Tamames, J.1
Rosselló-Móra, R.2
-
87
-
-
80053576890
-
Towards a genome based taxonomy of Mycoplasmas
-
PID: 21840423
-
Thompson C, Vieira NM, Vicente A, Thompson F (2011a) Towards a genome based taxonomy of Mycoplasmas. Infect Genet Evol 11:1798–1804. doi:10.1016/j.meegid.2011.07.020
-
(2011)
Infect Genet Evol
, vol.11
, pp. 1798-1804
-
-
Thompson, C.1
Vieira, N.M.2
Vicente, A.3
Thompson, F.4
-
88
-
-
80053566742
-
The genus Listonella MacDonell and Colwell 1986 is a later heterotypic synonym of the genus Vibrio Pacini 1854 (Approved Lists 1980)—a taxonomic opinion
-
PID: 21296930
-
Thompson FL, Thompson CC, Dias GM et al (2011b) The genus Listonella MacDonell and Colwell 1986 is a later heterotypic synonym of the genus Vibrio Pacini 1854 (Approved Lists 1980)—a taxonomic opinion. Int J Syst Evol Microbiol 61:3023–3027. doi:10.1099/ijs.0.030015-0
-
(2011)
Int J Syst Evol Microbiol
, vol.61
, pp. 3023-3027
-
-
Thompson, F.L.1
Thompson, C.C.2
Dias, G.M.3
-
90
-
-
85067819667
-
Streptococcal taxonomy based on genome sequence analyses
-
PID: 24358875
-
Thompson CC, Emmel VE, Fonseca EL et al (2013b) Streptococcal taxonomy based on genome sequence analyses. F1000Res 2:67. doi:10.12688/f1000research.2-67.v1
-
(2013)
F1000Res
, vol.2
, pp. 67
-
-
Thompson, C.C.1
Emmel, V.E.2
Fonseca, E.L.3
-
91
-
-
84885934108
-
Genomic taxonomy of the genus Prochlorococcus
-
PID: 23963220
-
Thompson CC, Silva GZ, Vieira NM et al (2013c) Genomic taxonomy of the genus Prochlorococcus. Microb Ecol 66:752–762. doi:10.1007/s00248-013-0270-8
-
(2013)
Microb Ecol
, vol.66
, pp. 752-762
-
-
Thompson, C.C.1
Silva, G.Z.2
Vieira, N.M.3
-
92
-
-
76849088617
-
Notes on the characterization of prokaryote strains for taxonomic purposes
-
COI: 1:CAS:528:DC%2BC3cXis1ant70%3D, PID: 19700448
-
Tindall BJ, Rosselló-Móra R, Busse H-J et al (2010) Notes on the characterization of prokaryote strains for taxonomic purposes. Int J Syst Evol Microbiol 60:249–266. doi:10.1099/ijs.0.016949-0
-
(2010)
Int J Syst Evol Microbiol
, vol.60
, pp. 249-266
-
-
Tindall, B.J.1
Rosselló-Móra, R.2
Busse, H.-J.3
-
93
-
-
84903998861
-
Time to revisit polyphasic taxonomy
-
PID: 24633913
-
Vandamme P, Peeters C (2014) Time to revisit polyphasic taxonomy. Antonie Van Leeuwenhoek 106:57–65
-
(2014)
Antonie Van Leeuwenhoek
, vol.106
, pp. 57-65
-
-
Vandamme, P.1
Peeters, C.2
-
94
-
-
0000770675
-
International Committee on Systematic Bacteriology announcement of the report of the ad hoc Committee on Reconciliation of Approaches to Bacterial Systematics
-
Wayne LG, Brenner DJ, Colwell RR, et al (1987) International Committee on Systematic Bacteriology announcement of the report of the ad hoc Committee on Reconciliation of Approaches to Bacterial Systematics. Int J Syst Bacteriol 463–464
-
(1987)
Int J Syst Bacteriol
, pp. 463-464
-
-
Wayne, L.G.1
Brenner, D.J.2
Colwell, R.R.3
-
95
-
-
64049108932
-
The modern concept of the procaryote
-
COI: 1:CAS:528:DC%2BD1MXjvVOhurw%3D, PID: 19168606, Discussion 2006–2007
-
Whitman WB (2009) The modern concept of the procaryote. J Bacteriol 191:2000–2005. doi:10.1128/JB.00962-08 Discussion 2006–2007
-
(2009)
J Bacteriol
, vol.191
, pp. 2000-2005
-
-
Whitman, W.B.1
-
96
-
-
79960961566
-
Origins of bacterial diversity through horizontal genetic transfer and adaptation to new ecological niches
-
COI: 1:CAS:528:DC%2BC3MXhtVyjsr%2FN, PID: 21711367
-
Wiedenbeck J, Cohan FM (2011) Origins of bacterial diversity through horizontal genetic transfer and adaptation to new ecological niches. FEMS Microbiol Rev 35:957–976. doi:10.1111/j.1574-6976.2011.00292.x
-
(2011)
FEMS Microbiol Rev
, vol.35
, pp. 957-976
-
-
Wiedenbeck, J.1
Cohan, F.M.2
-
97
-
-
0001271789
-
Phylogenetic structure of the prokaryotic domain: the primary kingdoms
-
COI: 1:STN:280:DyaE1c%2FltlSmtA%3D%3D, PID: 270744
-
Woese CR, Fox GE (1977) Phylogenetic structure of the prokaryotic domain: the primary kingdoms. Proc Natl Acad Sci USA 74:5088–5090
-
(1977)
Proc Natl Acad Sci USA
, vol.74
, pp. 5088-5090
-
-
Woese, C.R.1
Fox, G.E.2
-
98
-
-
65449134335
-
Assembling the marine metagenome, one cell at a time
-
PID: 19390573
-
Woyke T, Xie G, Copeland A et al (2009) Assembling the marine metagenome, one cell at a time. PLoS One 4:e5299. doi:10.1371/journal.pone.0005299
-
(2009)
PLoS One
, vol.4
, pp. 5299
-
-
Woyke, T.1
Xie, G.2
Copeland, A.3
-
99
-
-
0025318864
-
The effective number of codons used in a gene
-
COI: 1:CAS:528:DyaK3cXktVWmsbo%3D, PID: 2110097
-
Wright F (1990) The effective number of codons used in a gene. Gene 87:23–29
-
(1990)
Gene
, vol.87
, pp. 23-29
-
-
Wright, F.1
-
100
-
-
72949101201
-
A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea
-
COI: 1:CAS:528:DC%2BD1MXhs1SktbbM, PID: 20033048
-
Wu D, Hugenholtz P, Mavromatis K et al (2009) A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea. Nature 462:1056–1060. doi:10.1038/nature08656.A
-
(2009)
Nature
, vol.462
, pp. 1056-1060
-
-
Wu, D.1
Hugenholtz, P.2
Mavromatis, K.3
-
101
-
-
52149085893
-
The all-species living tree project: a 16S rRNA-based phylogenetic tree of all sequenced type strains
-
COI: 1:CAS:528:DC%2BD1cXhsVKntrfK, PID: 18692976
-
Yarza P, Richter M, Peplies J et al (2008) The all-species living tree project: a 16S rRNA-based phylogenetic tree of all sequenced type strains. Syst Appl Microbiol 31:241–250
-
(2008)
Syst Appl Microbiol
, vol.31
, pp. 241-250
-
-
Yarza, P.1
Richter, M.2
Peplies, J.3
|