메뉴 건너뛰기




Volumn 8, Issue , 2012, Pages

Global biogeography of SAR11 marine bacteria

Author keywords

Adaptive radiation; Antarctica; metagenome; Pelagibacter; phylotype distribution

Indexed keywords

INTERNAL TRANSCRIBED SPACER; SEA WATER;

EID: 84864250059     PISSN: None     EISSN: 17444292     Source Type: Journal    
DOI: 10.1038/msb.2012.28     Document Type: Article
Times cited : (178)

References (53)
  • 2
    • 0024549961 scopus 로고
    • Molecular basis of porin selectivity: Membrane experiments with OmpC-PhoE and OmpF-PhoE hybrid proteins of Escherichia coli K-12
    • DOI 10.1016/0005-2736(89)90075-8
    • Benz R, Schmid A, Van derLeyP,TommassenJ (1989) Molecular basis of porin selectivity: membrane experiments with OmpC-PhoE and OmpF-PhoE hybrid proteins of Escherichia coli K-12. Biochim Biophys Acta 981: 8-14 (Pubitemid 19127763)
    • (1989) Biochimica et Biophysica Acta - Biomembranes , vol.981 , Issue.1 , pp. 8-14
    • Benz, R.1    Schmid, A.2    Van Der Ley, P.3    Tommassen, J.4
  • 3
    • 28944440027 scopus 로고    scopus 로고
    • Marine bacterial microdiversity as revealed by internal transcribed spacer analysis
    • Brown MV, Fuhrman JA (2005) Marine bacterial microdiversity as revealed by internal transcribed spacer analysis. AquatMicrob Ecol 41: 15-23 (Pubitemid 41784249)
    • (2005) Aquatic Microbial Ecology , vol.41 , Issue.1 , pp. 15-23
    • Brown, M.V.1    Fuhrman, J.A.2
  • 4
    • 23944517269 scopus 로고    scopus 로고
    • Coupling 16S-ITS rDNA clone libraries and automated ribosomal intergenic spacer analysis to show marine microbial diversity: Development and application to a time series
    • DOI 10.1111/j.1462-2920.2005.00835.x
    • Brown MV, Schwalbach MS, Hewson I, Fuhrman JA (2005) Coupling 16S-ITS clone libraries and automated ribosomal intergenic spacer analysis to show marine microbial diversity: development and application to a time series. Environ Microbiol 7: 1466-1479 (Pubitemid 41204940)
    • (2005) Environmental Microbiology , vol.7 , Issue.9 , pp. 1466-1479
    • Brown, M.V.1    Schwalbach, M.S.2    Hewson, I.3    Fuhrman, J.A.4
  • 5
    • 60749109199 scopus 로고    scopus 로고
    • Seasonal dynamics of sar11 populations in the euphotic andmesopelagiczones of the northwestern sargasso sea
    • Carlson CA, Morris R, Parsons R, Treusch AH, Giovannoni SJ, Vergin K
    • Carlson CA, Morris R, Parsons R, Treusch AH, Giovannoni SJ, Vergin K (2009) Seasonal dynamics of SAR11 populations in the euphotic andmesopelagiczones of the northwestern Sargasso Sea. ISMEJ3: 283-295
    • (2009) ISMEJ , vol.3 , pp. 283-295
  • 6
    • 0033515574 scopus 로고    scopus 로고
    • Effect of cold shock on lipid A biosynthesis in escherichia coli: Induction at 12°c of an acyltransferase specific for palmitoleoyl-acyl carrier protein
    • Carty SM, Sreekumar KR, Raetz CRH (1999) Effect of cold shock on lipid A biosynthesis in Escherichia coli: induction at 12°C of an acyltransferase specific for palmitoleoyl-acyl carrier protein. J Biol Chem 274: 9677-9685
    • (1999) J Biol Chem , vol.274 , pp. 9677-9685
    • Carty, S.M.1    Sreekumar, K.R.2    Raetz, C.R.H.3
  • 11
    • 69949095008 scopus 로고    scopus 로고
    • Dynamics of the sar11 bacterioplankton lineage in relation to environmental conditions in the oligotrophic north pacific subtropical gyre
    • Eiler A, Hayakawa H, Church MJ, Karl DM, Rappé MS (2009) Dynamics of the SAR11 bacterioplankton lineage in relation to environmental conditions in the oligotrophic North Pacific subtropical gyre. Environ Microbiol 11: 2291-2300
    • (2009) Environ Microbiol , vol.11 , pp. 2291-2300
    • Eiler, A.1    Hayakawa, H.2    Church, M.J.3    Karl, D.M.4    Rappé, M.S.5
  • 14
    • 0031027068 scopus 로고    scopus 로고
    • Diversity and depth-specific distribution of SAR11 cluster rRNA genes from marine planktonic bacteria
    • Field KG, Gordon D, Wright T, Rappé M, Urback E, Vergin K, Giovannoni SJ (1997) Diversity and depth-specific distribution of SAR11 cluster rRNA genes from marine planktonic bacteria. Appl EnvironMicro 63: 63-70
    • (1997) Appl EnvironMicro , vol.63 , pp. 63-70
    • Field Kg, G.1
  • 15
    • 34147103873 scopus 로고    scopus 로고
    • Emergent biogeography of microbial communities in a model ocean
    • DOI 10.1126/science.1138544
    • Follows MJ, Dutkiewicz S, Grant S, Chisholm SW (2007) Emergent biogeography of microbial communities in a model ocean. Science 315: 1843-1846 (Pubitemid 46580143)
    • (2007) Science , vol.315 , Issue.5820 , pp. 1843-1846
    • Follows, M.J.1    Dutkiewicz, S.2    Grant, S.3    Chisholm, S.W.4
  • 16
    • 0033929777 scopus 로고    scopus 로고
    • Microdiversity of uncultured marine prokaryotes: The SAR11 cluster and the marine Archaea of Group I
    • DOI 10.1046/j.1365-294X.2000.00953.x
    • Garcia-Martinez J, Rodriguez-Valera F (2000) Microdiversity of uncultured marine prokaryotes: the SAR11 cluster and the marine archaea of group I. Mol Ecol 9: 935-948 (Pubitemid 30480499)
    • (2000) Molecular Ecology , vol.9 , Issue.7 , pp. 935-948
    • Garcia-Martinez, J.1    Rodriguez-Valera, F.2
  • 20
    • 0020623947 scopus 로고
    • A computer program for predicting protein antigenic determinants
    • DOI 10.1016/0161-5890(83)90029-9
    • Hopp TP, Woods KR (1983) A computer program for predicting protein antigenic determinants. Mol Immunol 20: 483-489 (Pubitemid 13093937)
    • (1983) Molecular Immunology , vol.20 , Issue.4 , pp. 483-489
    • Hopp, T.P.1    Woods, K.R.2
  • 21
    • 33645216333 scopus 로고    scopus 로고
    • Niche partitioning among prochlorococcus ecotypes along ocean-scale environmental gradients
    • Johnson ZI, Zinser ER, Coe A, McNulty NP, Woodward EMS, Chisholm SW (2006) Niche partitioning among Prochlorococcus ecotypes along ocean-scale environmental gradients. Science311: 1737-1740
    • (2006) Science , vol.311 , pp. 1737-1740
    • Johnson, Z.I.1    Zinser, E.R.2    Coe, A.3    McNulty, N.P.4    Ems, W.5    Chisholm, S.W.6
  • 22
    • 44649159553 scopus 로고    scopus 로고
    • Novel estuarine bacterioplankton in rRNA operon libraries from the Chesapeake Bay
    • DOI 10.3354/ame01177
    • Kan J, Evans SE, Chen F, Suzuki MT (2008) Novel estuarine bacterioplankton in rRNA operon libraries from the Chesapeake Bay. AquatMicrob Ecol 51: 55-66 (Pubitemid 351785228)
    • (2008) Aquatic Microbial Ecology , vol.51 , Issue.1 , pp. 55-66
    • Kan, J.1    Evans, S.E.2    Chen, F.3    Suzuki, M.T.4
  • 24
    • 39749129718 scopus 로고    scopus 로고
    • Large-scale transposon mutagenesis of Photobacterium profundum SS9 reveals new genetic loci important for growth at low temperature and high pressure
    • DOI 10.1128/JB.01176-07
    • Lauro FM, Tran K, Vezzi A, Vitulo N, Valle G, Bartlett DH (2008) Large- scale transposon mutagenesis of Photobacterium profundum SS9 reveals new genetic loci important for growth at low temperature and high pressure. J Bacteriol 190: 1699-1709 (Pubitemid 351304026)
    • (2008) Journal of Bacteriology , vol.190 , Issue.5 , pp. 1699-1709
    • Lauro, F.M.1    Tran, K.2    Vezzi, A.3    Vitulo, N.4    Valle, G.5    Bartlett, D.H.6
  • 27
    • 25144481245 scopus 로고    scopus 로고
    • Temporal and spatial response of bacterioplankton lineages to annual convective overturn at the Bermuda Atlantic Time-series Study site
    • Morris RM, Vergin KL, Cho JC, Rappé MS, Carlson CA, Giovannoni SJ (2005) Temporal and spatial response of bacterioplankton lineages to annual convective overturn at the Bermuda Atlantic Time-Series Study Site. Limnol Oceanogr 50: 1687-1696 (Pubitemid 41356448)
    • (2005) Limnology and Oceanography , vol.50 , Issue.5 , pp. 1687-1696
    • Morris, R.M.1    Vergin, K.L.2    Cho, J.-C.3    Rappe, M.S.4    Carlson, C.A.5    Giovannoni, S.J.6
  • 29
    • 0022507362 scopus 로고
    • Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions
    • Nei M, Gojobori T (1986) Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions. Mol Biol Evol 3: 418-426 (Pubitemid 16010523)
    • (1986) Molecular Biology and Evolution , vol.3 , Issue.5 , pp. 418-426
    • Nei, M.1    Gojobori, T.2
  • 30
    • 77954832678 scopus 로고    scopus 로고
    • Metaproteogenomic analysis of a dominant green sulfur bacterium from Ace Lake, Antarctica
    • Ng C, DeMaere MZ, Williams TJ, Lauro FM, Raferty M, Gibson JAE (2010) Metaproteogenomic analysis of a dominant green sulfur bacterium from Ace Lake, Antarctica. ISMEJ4: 1002-1019
    • (2010) ISMEJ , vol.4 , pp. 1002-1019
    • Ng, C.1    Demaere, M.Z.2    Williams, T.J.3    Lauro, F.M.4    Raferty, M.5    Jae, G.6
  • 31
    • 79959352252 scopus 로고    scopus 로고
    • Complete genome sequence of strain imcc9063, belonging to sar11 subgroup 3, isolated from the arctic ocean
    • Oh HM, Kang I, Lee K, Jang Y, Lim S, Cho JC (2011) Complete genome sequence of strain IMCC9063, belonging to SAR11 subgroup 3, isolated from the Arctic Ocean. J Bacteriol 193: 3380
    • (2011) J Bacteriol , vol.193 , pp. 3380
    • Oh, H.M.1    Kang, I.2    Lee, K.3    Jang, Y.4    Lim, S.5    Cho, J.C.6
  • 32
    • 13444274140 scopus 로고    scopus 로고
    • Structural insights into FtsZ protofilament formation
    • Oliva MA, Cordell SC, Lowe J (2004) Structural insights into FtsZ protofilament formation. Nat Struct Mol Biol 11: 1243-1250
    • (2004) Nat Struct Mol Biol , vol.11 , pp. 1243-1250
    • Ma, O.1    Cordell, S.C.2    Lowe, J.3
  • 33
    • 45549109750 scopus 로고    scopus 로고
    • Genome assembly forensics: Finding the elusive mis-assembly
    • Phillippy AM, Schatz MC, Pop M (2008) Genome assembly forensics: finding the elusive mis-assembly. Genome Biol 9: R55
    • (2008) Genome Biol , vol.9
    • Phillippy, A.M.1    Schatz, M.C.2    Pop, M.3
  • 34
    • 0002364934 scopus 로고    scopus 로고
    • The chemical stratification and microbial communities of Ace Lake, Antarctica: A review of the characteristics of a marine-derived meromictic lake
    • Rankin LM, Gibson JAE, Franzmann PD, Burton HR (1999) The chemical stratification and microbial communities of Ace Lake, Antarctica: a review of the characteristics of a marine-derived meromictic lake. Polarforschung, 66: 35-52
    • (1999) Polarforschung , vol.66 , pp. 35-52
    • Rankin, L.M.1    Gibson, J.A.E.2    Franzmann, P.D.3    Burton, H.R.4
  • 35
    • 0037043731 scopus 로고    scopus 로고
    • Cultivation of the ubiquitous SAR11 marine bacterioplankton clade
    • Rappe MS, Connon SA, Vergin KL, Giovannoni SJ (2002) Cultivation of the ubiquitous SAR11 marine bacterioplankton clade. Nature 418: 630-633
    • (2002) Nature , vol.418 , pp. 630-633
    • Rappe, M.S.1    Connon, S.A.2    Vergin, K.L.3    Giovannoni, S.J.4
  • 36
    • 84856080520 scopus 로고    scopus 로고
    • The SAR11 group of Alpha-Proteobacteria is not related to the origin of mitochondria
    • Rodŕ?guez-Ezpeleta N, Embley TM (2012) The SAR11 group of Alpha-Proteobacteria is not related to the origin of mitochondria. PLoS ONE 7: e30520
    • (2012) PLoS ONE , vol.7
    • Rodŕguez-Ezpeleta N, E.1
  • 37
    • 33947238287 scopus 로고    scopus 로고
    • The sorcerer II global ocean sampling expedition northwest atlantic through eastern tropical pacific
    • Rusch D, Halpern AL, Sutton G, Heidelberg KB, Williamson S, Yooseph S (2007) The Sorcerer II Global Ocean sampling expedition: Northwest Atlantic through Eastern Tropical Pacific. PLos Biol, 5: e77
    • (2007) PLos Biol , vol.5
    • Rusch, D.1    Halpern, A.L.2    Sutton, G.3    Heidelberg, K.B.4    Williamson, S.5    Yooseph, S.6
  • 39
    • 77649128177 scopus 로고    scopus 로고
    • The presence of the glycolysis operon in SAR11 genomes is positively correlated with ocean productivity
    • Schwalbach MS, Tripp HJ, Steindier L, Smith DP, Giovannoni SJ (2010) The presence of the glycolysis operon in SAR11 genomes is positively correlated with ocean productivity Environ Microbiol 12: 490-500
    • (2010) Environ Microbiol , vol.12 , pp. 490-500
    • Schwalbach, M.S.1    Tripp, H.J.2    Steindier, L.3    Smith, D.P.4    Giovannoni, S.J.5
  • 40
    • 0028083825 scopus 로고
    • Temperature regulation of heterotrophic bacterioplankton abundance, production, and specific growth rate in Chesapeake Bay
    • Shiah FK, Ducklow HW (1994) Temperature regulation of heterotrophic bacterioplankton abundance, production, and specific growth rate in Chesapeake Bay. Limnol Oceanogr 39: 1243-1258 (Pubitemid 2148356)
    • (1994) Limnology and Oceanography , vol.39 , Issue.6 , pp. 1243-1258
    • Shiah Fuh Kwo1    Ducklow, H.W.2
  • 42
    • 34547775666 scopus 로고    scopus 로고
    • Improvements of high-throughput culturing yielded novel SAR11 strains and other abundant marine bacteria from the Oregon coast and the Bermuda Atlantic Time Series study site
    • DOI 10.1038/ismej.2007.49, PII ISMEJ200749
    • Stingl U, Tripp HJ, Giovannoni SJ (2007) Improvements of high-throughput culturing yielded novel SAR11 strains and other abundant marine bacteria from the Oregon coast and the Bermuda Atlantic Time Series study site. ISME J 1: 361-371 (Pubitemid 47227856)
    • (2007) ISME Journal , vol.1 , Issue.4 , pp. 361-371
    • Stingl, U.1    Tripp, H.J.2    Giovannoni, S.J.3
  • 44
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson JD, Higgins HG, Gibson TJ (1994) CLUSTALW: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22: 4673-4680 (Pubitemid 24354800)
    • (1994) Nucleic Acids Research , vol.22 , Issue.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 48
    • 84855864414 scopus 로고    scopus 로고
    • Independent genome reduction and phylogenetic reclassification of the oceanic sar11 clade
    • Viklund J, Ettema TJ, Andersson SG (2012) Independent genome reduction and phylogenetic reclassification of the oceanic SAR11 clade. Mol Biol Evol 29: 599-615
    • (2012) Mol Biol Evol , vol.29 , pp. 599-615
    • Viklund, J.1    Ettema, T.J.2    Andersson, S.G.3
  • 49
    • 36549049268 scopus 로고    scopus 로고
    • Ortholog detection using the reciprocal smallest distance algorithm
    • DOI 10.1385/1-59745-515-6:95, Comparative Genomics
    • Wall DP, Deluca T (2007) Ortholog detection using the reciprocal smallest distance algorithm. Methods Mol Biol 396: 95-110 (Pubitemid 350190036)
    • (2007) Methods in Molecular Biology , vol.396 , pp. 95-110
    • Wall, D.P.1    DeLuca, T.2
  • 51
    • 38849200974 scopus 로고    scopus 로고
    • Natural variation in sar11 marine bacterioplankton genomes inferred from metagenomic data
    • Wilhelm LJ, Tripp HJ, Givan SA, Smith DP, Giovannoni SJ (2007) Natural variation in SAR11 marine bacterioplankton genomes inferred from metagenomic data. Biol Direct 2: 27
    • (2007) Biol Direct , vol.2 , pp. 27
    • Wilhelm, L.J.1    Tripp, H.J.2    Givan, S.A.3    Smith, D.P.4    Giovannoni, S.J.5
  • 52
    • 76149124222 scopus 로고    scopus 로고
    • Global proteomic analysis of the insoluble, soluble and supernatant fractions of the psychrophilic archaeon Methanococcoides burtonii Part I: The effect of growth temperature
    • Williams TJ, Burg DW, Ertan H, Raferty MJ, Poljak A, Guilhaus M, Pilak O, Cavicchioli R (2010) Global proteomic analysis of the insoluble, soluble and supernatant fractions of the psychrophilic archaeon Methanococcoides burtonii Part I: the effect of growth temperature. J Prot Res 9: 640-652
    • (2010) J Prot Res , vol.9 , pp. 640-652
    • Williams, T.J.1    Burg, D.W.2    Ertan, H.3    Raferty, M.J.4    Poljak, A.5    Guilhaus, M.6    Pilak, O.7    Cavicchioli, R.8
  • 53
    • 34547803197 scopus 로고    scopus 로고
    • PAML 4: Phylogenetic analysis by maximum likelihood
    • DOI 10.1093/molbev/msm088
    • Yang Z (2007) PAML 4: phylogenetic analysis by maximum likelihood. Mol Biol Evol 24: 1586-1591 (Pubitemid 47236688)
    • (2007) Molecular Biology and Evolution , vol.24 , Issue.8 , pp. 1586-1591
    • Yang, Z.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.