Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes

Nature Biotechnology

Volumn 32, Issue 8, 2014, Pages 822-828

  Nielsen, H Bjørn ^a,b   Almeida, Mathieu ^c,d,e   Juncker, Agnieszka S ^a,b   Rasmussen, Simon ^a   Li, Junhua ^f,g,h   Sunagawa, Shinichi ⁱ   Plichta, Damian R ^a   Gautier, Laurent ^a   Pedersen, Anders G ^a   Chatelier, Emmanuelle Le ^c,d   Pelletier, Eric ^j,k,l   Bonde, Ida ^a,b   Nielsen, Trine ^m   Manichanh, Chaysavanh ⁿ   Arumugam, Manimozhiyan ⁱ   Batto, Jean Michel ^c,d   Quintanilha Dos Santos, Marcelo B ^a   Blom, Nikolaj ^b   Borruel, Natalia ⁿ   Burgdorf, Kristoffer S ^m   Boumezbeur, Fouad ^c,d   Casellas, Francesc ⁿ   Doré, Joël ^c,d   Dworzynski, Piotr ^a   Guarner, Francisco ⁿ   Hansen, Torben ^m,o   Hildebrand, Falk ^p,q   Kaas, Rolf S ^a   Kennedy, Sean ^c,d   Kristiansen, Karsten ^r   Kultima, Jens Roat ⁱ   Leonard, Pierre ^c   Levenez, Florence ^c,d   Lund, Ole ^a   Moumen, Bouziane ^c,d   Le Paslier, Denis ^j,k,l   Pons, Nicolas ^c,d   Pedersen, Oluf ^m,s,t,u   Prifti, Edi ^c,d   Qin, Junjie ^f,g   Raes, Jeroen ^p,q,v   Sørensen, Søren ^r   Tap, Julien ⁱ   Tims, Sebastian ^w   Ussery, David W ^a   Yamada, Takuji ^i,x   Renault, Pierre ^c   Sicheritz Ponten, Thomas ^a,b   Bork, Peer ^i,y   Wang, Jun ^g,m,r,z   Brunak, Søren ^a,b   Ehrlich, S Dusko ^c,d,aa   Jamet, Alexandre ^c   Mérieux, Alexandre ^ab   Cultrone, Antonella ^c   Torrejon, Antonio ⁿ   Quinquis, Benoit ^d   Brechot, Christian ^ab   Delorme, Christine ^c   M’rini, Christine ^ab   de Vos, Willem M ^w   Maguin, Emmanuelle ^c   Varela, Encarna ⁿ   Guedon, Eric ^c   Gwen, Falony ^p   Haimet, Florence ^d   Artiguenave, François ^j   Vandemeulebrouck, Gaetana ^c   Denariaz, Gérard ^ac   Khaci, Ghalia ^c   Blottière, Hervé ^d   Knol, Jan ^ad   Weissenbach, Jean ^j   van Hylckama Vlieg, Johan E T ^ac   Torben, Jørgensen ^w   Parkhill, Julian ^ae   Turner, Keith ^ae   van de Guchte, Maarten ^c   Antolin, Maria ⁿ   Rescigno, Maria ^af   Kleerebezem, Michiel ^w   Derrien, Muriel ^ac   Galleron, Nathalie ^d   Sanchez, Nicolas ^c   Grarup, Niels ^t   Veiga, Patrick ^ac   Oozeer, Raish ^ad   Dervyn, Rozenn ^c   Layec, Séverine ^c   Bruls, Thomas ^j   Winogradski, Yohanan ^c   Erwin, Zoetendal ^w   more..

^a TECHNICAL UNIVERSITY OF DENMARK   (Denmark)

^b Chalmers University of Technology   (Denmark)

^c UMR1319 MICALIS   (France)

^d University of Paris Saclay   (France)

^e UNIVERSITY OF MARYLAND   (United States)

^f BGI Hong Kong Research Institute   (China)

^g BGI SHENZHEN   (China)

^h SOUTH CHINA UNIVERSITY OF TECHNOLOGY   (China)

ⁱ EUROPEAN MOLECULAR BIOLOGY LABORATORY   (Germany)

^j CEA Fontenay aux Roses Bâtiment 61   (France)

^k CNRS   (France)

^l UNIVERSITÉ D EVRY VAL D ESSONNE   (France)

^m Capital Region   (Denmark)

ⁿ HOSPITAL UNIVERSITARI VALL D HEBRON   (Spain)

^o UNIVERSITY OF SOUTHERN DENMARK   (Denmark)

^p DEPARTMENT OF PLANT SYSTEMS BIOLOGY   (Belgium)

^q VRIJE UNIVERSITEIT BRUSSEL   (Belgium)

^r UNIVERSITY OF COPENHAGEN   (Denmark)

^s HAGEDORN RESEARCH INSTITUTE   (Denmark)

^t UNIVERSITY OF COPENHAGEN   (Denmark)

^u AARHUS UNIVERSITY   (Denmark)

^v REGA INSTITUTE FOR MEDICAL RESEARCH   (Belgium)

^w WAGENINGEN UNIVERSITY   (Netherlands)

^x TOKYO INSTITUTE OF TECHNOLOGY   (Japan)

^y MAX DELBRÜCK CENTER FOR MOLECULAR MEDICINE   (Germany)

^z KING ABDULAZIZ UNIVERSITY   (Saudi Arabia)

^aa GUY S HOSPITAL   (United Kingdom)

^ab Institut Merieux   (France)

^ac Danone Research   (France)

^ad DANONE RESEARCH   (Netherlands)

^ae WELLCOME TRUST SANGER INSTITUTE   (United Kingdom)

^af EUROPEAN INSTITUTE OF ONCOLOGY   (Italy)

more..

Author keywords

[No Author keywords available]

Indexed keywords

VIRUSES;

BACTERIAL STRAINS; BIOLOGICAL ENTITIES; GENETIC ELEMENTS; HIGH QUALITY; MICROBIAL DIVERSITY; MICROBIAL GENOMES; REFERENCE DATABASE; UNSOLVED PROBLEMS;

GENES;

ARTICLE; BACTERIAL STRAIN; GENE CLUSTER; GENE SEGREGATION; GENETIC HETEROGENEITY; GENETIC IDENTIFICATION; GENOME; HUMAN; INTESTINE FLORA; METAGENOMICS; MICROBIAL COMMUNITY; MICROBIAL DIVERSITY; MICROBIAL GENOME; MICROBIOME; NONHUMAN; ORGANISMS; PRIORITY JOURNAL; REFERENCE DATABASE; VIRUS;

EID: 84905730761     PISSN: 10870156     EISSN: 15461696     Source Type: Journal    
DOI: 10.1038/nbt.2939     Document Type: Article

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