-
1
-
-
0033746313
-
The ecology and biogeography of microorganisms on plant surfaces
-
Andrews JH, Harris RF, (2000) The ecology and biogeography of microorganisms on plant surfaces. Annu Rev Phytopathol 38: 145-180.
-
(2000)
Annu Rev Phytopathol
, vol.38
, pp. 145-180
-
-
Andrews, J.H.1
Harris, R.F.2
-
2
-
-
0023483771
-
Leaves as islands for microbes
-
Kinkel LL, Andrews JH, Berbee FM, Nordheim EV, (1987) Leaves as islands for microbes. Oecologia 71: 405-408.
-
(1987)
Oecologia
, vol.71
, pp. 405-408
-
-
Kinkel, L.L.1
Andrews, J.H.2
Berbee, F.M.3
Nordheim, E.V.4
-
3
-
-
56649114468
-
Phyllosphere microbiology with special reference to diversity and plant genotype
-
Whipps JM, Hand P, Pink D, Bending GD, (2008) Phyllosphere microbiology with special reference to diversity and plant genotype. J Appl Microbiol 105: 1744-1755.
-
(2008)
J Appl Microbiol
, vol.105
, pp. 1744-1755
-
-
Whipps, J.M.1
Hand, P.2
Pink, D.3
Bending, G.D.4
-
4
-
-
84859610267
-
Nectar yeasts of two southern Spanish plants: the roles of immigration and physiological traits in community assembly
-
Pozo MI, Lachance M-A, Herrera CM, (2012) Nectar yeasts of two southern Spanish plants: the roles of immigration and physiological traits in community assembly. FEMS Microbiol Ecol 80: 281-293.
-
(2012)
FEMS Microbiol Ecol
, vol.80
, pp. 281-293
-
-
Pozo, M.I.1
Lachance, M.-A.2
Herrera, C.M.3
-
5
-
-
0344364587
-
Grassroots ecology: plant-microbe-soil interactions as drivers of plant community structure and dynamics
-
Reynolds HL, Packer A, Bever JD, Clay AK, (2003) Grassroots ecology: plant-microbe-soil interactions as drivers of plant community structure and dynamics. Ecology 84: 2281-2291.
-
(2003)
Ecology
, vol.84
, pp. 2281-2291
-
-
Reynolds, H.L.1
Packer, A.2
Bever, J.D.3
Clay, A.K.4
-
7
-
-
80052361936
-
Evolutionary ecology of plant-microbe interactions: soil microbial structure alters selection on plant traits
-
Lau JA, Lennon JT, (2011) Evolutionary ecology of plant-microbe interactions: soil microbial structure alters selection on plant traits. New Phytol 192: 215-224.
-
(2011)
New Phytol
, vol.192
, pp. 215-224
-
-
Lau, J.A.1
Lennon, J.T.2
-
8
-
-
7444261311
-
Ecology of yeasts in plant-bumblebee mutualism in Central Europe
-
Brysch-Herzberg M, (2004) Ecology of yeasts in plant-bumblebee mutualism in Central Europe. FEMS Microbiol Ecol 50: 87-100.
-
(2004)
FEMS Microbiol Ecol
, vol.50
, pp. 87-100
-
-
Brysch-Herzberg, M.1
-
9
-
-
54549111431
-
Invisible floral larcenies: microbial communities degrade floral nectar of bumble bee-pollinated plants
-
Herrera CM, García IM, Pérez R, (2008) Invisible floral larcenies: microbial communities degrade floral nectar of bumble bee-pollinated plants. Ecology 89: 2369-2376.
-
(2008)
Ecology
, vol.89
, pp. 2369-2376
-
-
Herrera, C.M.1
García, I.M.2
Pérez, R.3
-
10
-
-
84874876629
-
Yeasts in nectar of an early-blooming herb: sought by bumble bees, detrimental to plant fecundity
-
Herrera CM, Pozo MI, Medrano M, (2013) Yeasts in nectar of an early-blooming herb: sought by bumble bees, detrimental to plant fecundity. Ecology 94: 273-279.
-
(2013)
Ecology
, vol.94
, pp. 273-279
-
-
Herrera, C.M.1
Pozo, M.I.2
Medrano, M.3
-
11
-
-
77954337834
-
Nectar yeasts warm the flowers of a winter-blooming plant
-
Herrera CM, Pozo MI, (2010) Nectar yeasts warm the flowers of a winter-blooming plant. Proc R Soc Lond B Biol Sci 277: 1827-1834.
-
(2010)
Proc R Soc Lond B Biol Sci
, vol.277
, pp. 1827-1834
-
-
Herrera, C.M.1
Pozo, M.I.2
-
12
-
-
78650677377
-
Species richness of yeast communities in floral nectar of southern Spanish plants
-
Pozo MI, Herrera CM, Bazaga P, (2011) Species richness of yeast communities in floral nectar of southern Spanish plants. Microb Ecol 61: 82-91.
-
(2011)
Microb Ecol
, vol.61
, pp. 82-91
-
-
Pozo, M.I.1
Herrera, C.M.2
Bazaga, P.3
-
13
-
-
84864336521
-
Flowers as islands: spatial distribution of nectar-inhabiting microfungi among plants of Mimulus aurantiacus, a hummingbird-pollinated shrub
-
Belisle M, Peay KG, Fukami T, (2012) Flowers as islands: spatial distribution of nectar-inhabiting microfungi among plants of Mimulus aurantiacus, a hummingbird-pollinated shrub. Microb Ecol 63: 711-718.
-
(2012)
Microb Ecol
, vol.63
, pp. 711-718
-
-
Belisle, M.1
Peay, K.G.2
Fukami, T.3
-
14
-
-
84867740445
-
Relationships among nectar-dwelling yeasts, flowers and ants: patterns and incidence on nectar traits
-
de Vega C, Herrera CM, (2012) Relationships among nectar-dwelling yeasts, flowers and ants: patterns and incidence on nectar traits. Oikos 121: 1878-1888.
-
(2012)
Oikos
, vol.121
, pp. 1878-1888
-
-
de Vega, C.1
Herrera, C.M.2
-
15
-
-
84875734122
-
Microorganisms transported by ants induce changes in floral nectar composition of an ant-pollinated plant
-
de Vega C, Herrera CM, (2013) Microorganisms transported by ants induce changes in floral nectar composition of an ant-pollinated plant. Am J Bot 100: 792-800.
-
(2013)
Am J Bot
, vol.100
, pp. 792-800
-
-
de Vega, C.1
Herrera, C.M.2
-
16
-
-
84860658572
-
Zooming-in on floral nectar: a first exploration of nectar-associated bacteria in wild plant communities
-
Álvarez-Pérez S, Herrera CM, de Vega C, (2012) Zooming-in on floral nectar: a first exploration of nectar-associated bacteria in wild plant communities. FEMS Microbiol Ecol 80: 591-602.
-
(2012)
FEMS Microbiol Ecol
, vol.80
, pp. 591-602
-
-
Álvarez-Pérez, S.1
Herrera, C.M.2
de Vega, C.3
-
17
-
-
84856763448
-
Bacterial communities in floral nectar
-
Fridman S, Izhaki I, Gerchman Y, Halpern M, (2012) Bacterial communities in floral nectar. Environ Microbiol Rep 4: 97-104.
-
(2012)
Environ Microbiol Rep
, vol.4
, pp. 97-104
-
-
Fridman, S.1
Izhaki, I.2
Gerchman, Y.3
Halpern, M.4
-
18
-
-
84873174667
-
Composition, richness and non-random assembly of culturable bacterial-microfungal communities in floral nectar of Mediterranean plants
-
Álvarez-Pérez S, Herrera CM, (2013) Composition, richness and non-random assembly of culturable bacterial-microfungal communities in floral nectar of Mediterranean plants. FEMS Microbiol Ecol 83: 685-699.
-
(2013)
FEMS Microbiol Ecol
, vol.83
, pp. 685-699
-
-
Álvarez-Pérez, S.1
Herrera, C.M.2
-
19
-
-
84874913789
-
Among-population variation in microbial community structure in the floral nectar of the bee-pollinated forest herb Pulmonaria officinalis L
-
Jacquemyn H, Lenaerts M, Brys R, Willems K, Honnay O, et al. (2013) Among-population variation in microbial community structure in the floral nectar of the bee-pollinated forest herb Pulmonaria officinalis L. PLoS One. 8: e56917.
-
(2013)
PLoS One
, vol.8
-
-
Jacquemyn, H.1
Lenaerts, M.2
Brys, R.3
Willems, K.4
Honnay, O.5
-
20
-
-
84886362278
-
Microbial diversity in the floral nectar of seven Epipactis (Orchidaceae) species
-
Jacquemyn H, Lenaerts M, Tyteca D, Lievens B, (2013) Microbial diversity in the floral nectar of seven Epipactis (Orchidaceae) species. MicrobiologyOpen 2: 644-658.
-
(2013)
MicrobiologyOpen
, vol.2
, pp. 644-658
-
-
Jacquemyn, H.1
Lenaerts, M.2
Tyteca, D.3
Lievens, B.4
-
21
-
-
84870824586
-
Nectar bacteria, but not yeast, weaken a plant-pollinator mutualism
-
Vannette RL, Gauthier M-PL, Fukami T, (2013) Nectar bacteria, but not yeast, weaken a plant-pollinator mutualism. Proc Biol Sci 280: 20122601.
-
(2013)
Proc Biol Sci
, vol.280
, pp. 20122601
-
-
Vannette, R.L.1
Gauthier, M.-P.L.2
Fukami, T.3
-
22
-
-
0034515979
-
The ecological significance of toxic nectar
-
Adler LS, (2000) The ecological significance of toxic nectar. Oikos 91: 409-420.
-
(2000)
Oikos
, vol.91
, pp. 409-420
-
-
Adler, L.S.1
-
23
-
-
84920181125
-
Nectar chemistry
-
Nicolson SW, Nepi M, Pacini E, editors, Dordrecht, The Netherlands: Springer-Verlag
-
Nicolson SW, Thornburg RW (2007) Nectar chemistry. In: Nicolson SW, Nepi M, Pacini E, editors. Nectaries and nectar. Dordrecht, The Netherlands: Springer-Verlag. 215-264.
-
(2007)
Nectaries and nectar
, pp. 215-264
-
-
Nicolson, S.W.1
Thornburg, R.W.2
-
24
-
-
70450181628
-
Nectar chemistry is tailored for both attraction of mutualists and protection from exploiters
-
González-Teuber M, Heil M, (2009) Nectar chemistry is tailored for both attraction of mutualists and protection from exploiters. Plant Signal Behav 4: 809-813.
-
(2009)
Plant Signal Behav
, vol.4
, pp. 809-813
-
-
González-Teuber, M.1
Heil, M.2
-
25
-
-
79954414819
-
Nectar: generation, regulation and ecological functions
-
Heil M, (2011) Nectar: generation, regulation and ecological functions. Trends Plant Sci 16: 191-200.
-
(2011)
Trends Plant Sci
, vol.16
, pp. 191-200
-
-
Heil, M.1
-
26
-
-
84882701919
-
The production and protection of nectars
-
Escalante-Pérez M, Heil M, (2012) The production and protection of nectars. Progress in Botany 74: 239-261.
-
(2012)
Progress in Botany
, vol.74
, pp. 239-261
-
-
Escalante-Pérez, M.1
Heil, M.2
-
27
-
-
70350574841
-
Yeasts in floral nectar of some South African plants: quantification and associations with pollinator type and sugar concentration
-
de Vega C, Herrera CM, Johnson SD, (2009) Yeasts in floral nectar of some South African plants: quantification and associations with pollinator type and sugar concentration. S Afr J Bot 75: 798-806.
-
(2009)
S Afr J Bot
, vol.75
, pp. 798-806
-
-
de Vega, C.1
Herrera, C.M.2
Johnson, S.D.3
-
28
-
-
84855644469
-
Phylogenetic relatedness predicts priority effects in nectar yeast communities
-
Peay KG, Belisle M, Fukami T, (2012) Phylogenetic relatedness predicts priority effects in nectar yeast communities. Proc Biol Sci 279: 749-758.
-
(2012)
Proc Biol Sci
, vol.279
, pp. 749-758
-
-
Peay, K.G.1
Belisle, M.2
Fukami, T.3
-
29
-
-
77953483900
-
Antimicrobial nectar inhibits a florally transmitted pathogen of a wild Cucurbita pepo (Cucurbitaceae)
-
Sasu MA, Wall KL, Stephenson AG, (2010) Antimicrobial nectar inhibits a florally transmitted pathogen of a wild Cucurbita pepo (Cucurbitaceae). Am J Bot 97: 1025-1030.
-
(2010)
Am J Bot
, vol.97
, pp. 1025-1030
-
-
Sasu, M.A.1
Wall, K.L.2
Stephenson, A.G.3
-
30
-
-
0024540998
-
Genotypic relationships and taxonomic localization of unclassified Pseudomonas and Pseudomonas-like strains by deoxyribonucleic acid:ribosomal ribonucleic acid hybridizations
-
De Vos P, Van Landschoot A, Segers P, Tytgat R, Gillis M, et al. (1989) Genotypic relationships and taxonomic localization of unclassified Pseudomonas and Pseudomonas-like strains by deoxyribonucleic acid:ribosomal ribonucleic acid hybridizations. Int J Syst Bacteriol 39: 35-49.
-
(1989)
Int J Syst Bacteriol
, vol.39
, pp. 35-49
-
-
De Vos, P.1
Van Landschoot, A.2
Segers, P.3
Tytgat, R.4
Gillis, M.5
-
32
-
-
55449109855
-
Nonmedical: Pseudomonas
-
Dworkin M, Falkow S, Rosenberg E, Schleifer KH, Stackebrandt E, editors, 3rd ed, Proteobacteria, Gamma Subclass. New York: Springer-Verlag
-
Moore ERB, Tindall BJ, Dos Santos VAPM, Pieper DH, Ramos J-L, et al. (2006) Nonmedical: Pseudomonas. In: Dworkin M, Falkow S, Rosenberg E, Schleifer KH, Stackebrandt E, editors. The Prokaryotes. 3rd ed. Vol 6. Proteobacteria, Gamma Subclass. New York: Springer-Verlag. 646-703.
-
(2006)
The Prokaryotes
, vol.6
, pp. 646-703
-
-
Moore, E.R.B.1
Tindall, B.J.2
Dos Santos, V.A.P.M.3
Pieper, D.H.4
Ramos, J.-L.5
-
33
-
-
79958048843
-
Pseudomonas genomes: diverse and adaptable
-
Silby MW, Winstanley C, Godfrey SA, Levy SB, Jackson RW, (2011) Pseudomonas genomes: diverse and adaptable. FEMS Microbiol Rev 35: 652-680.
-
(2011)
FEMS Microbiol Rev
, vol.35
, pp. 652-680
-
-
Silby, M.W.1
Winstanley, C.2
Godfrey, S.A.3
Levy, S.B.4
Jackson, R.W.5
-
34
-
-
32444443922
-
Mutualistic symbiosis between Bursaphelenchus xylophilus and bacteria of the genus Pseudomonas
-
Zhao BG, Lin F, (2005) Mutualistic symbiosis between Bursaphelenchus xylophilus and bacteria of the genus Pseudomonas. For Path 35: 339-345.
-
(2005)
For Path
, vol.35
, pp. 339-345
-
-
Zhao, B.G.1
Lin, F.2
-
35
-
-
34848914134
-
Interactions between plants and beneficial Pseudomonas spp.: exploiting bacterial traits for crop protection
-
Mercado-Blanco J, Bakker PAHM, (2007) Interactions between plants and beneficial Pseudomonas spp.: exploiting bacterial traits for crop protection. Antonie Van Leeuwenhoek 92: 367-389.
-
(2007)
Antonie Van Leeuwenhoek
, vol.92
, pp. 367-389
-
-
Mercado-Blanco, J.1
Bakker, P.A.H.M.2
-
36
-
-
80855141638
-
Mutualistic nematode-bacteria complexes associated with insects
-
Ryss AY, Kulinich OA, Turitsin VS, Mazurin ES, (2011) Mutualistic nematode-bacteria complexes associated with insects. Entomol Rev 91: 908-914.
-
(2011)
Entomol Rev
, vol.91
, pp. 908-914
-
-
Ryss, A.Y.1
Kulinich, O.A.2
Turitsin, V.S.3
Mazurin, E.S.4
-
37
-
-
77955516907
-
DNA sequence-based analysis of the Pseudomonas species
-
Mulet M, Lalucat J, García-Valdés E, (2010) DNA sequence-based analysis of the Pseudomonas species. Environ Microbiol 12: 1513-1530.
-
(2010)
Environ Microbiol
, vol.12
, pp. 1513-1530
-
-
Mulet, M.1
Lalucat, J.2
García-Valdés, E.3
-
38
-
-
3042666256
-
MUSCLE: multiple sequence alignment with high accuracy and high throughput
-
Edgar RC, (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32: 1792-1797.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 1792-1797
-
-
Edgar, R.C.1
-
39
-
-
0034201441
-
EMBOSS: the European molecular biology open software suite
-
Rice P, Longden I, Bleasby A, (2000) EMBOSS: the European molecular biology open software suite. Trends Genet 16: 276-277.
-
(2000)
Trends Genet
, vol.16
, pp. 276-277
-
-
Rice, P.1
Longden, I.2
Bleasby, A.3
-
40
-
-
77954272855
-
TranslatorX: multiple alignment of nucleotide sequences guided by amino acid translations
-
Abascal F, Zardoya R, Telford MJ, (2010) TranslatorX: multiple alignment of nucleotide sequences guided by amino acid translations. Nucleic Acids Res 38: W7-W13.
-
(2010)
Nucleic Acids Res
, vol.38
-
-
Abascal, F.1
Zardoya, R.2
Telford, M.J.3
-
41
-
-
0002051540
-
BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
-
Hall TA, (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucl Acids Symp Ser 41: 95-98.
-
(1999)
Nucl Acids Symp Ser
, vol.41
, pp. 95-98
-
-
Hall, T.A.1
-
42
-
-
0034043778
-
Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
-
Castresana J, (2000) Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol Biol Evol 17: 540-552.
-
(2000)
Mol Biol Evol
, vol.17
, pp. 540-552
-
-
Castresana, J.1
-
43
-
-
65649117685
-
DnaSP v5: a software for comprehensive analysis of DNA polymorphism data
-
Librado P, Rozas J, (2009) DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics 25: 1451-1452.
-
(2009)
Bioinformatics
, vol.25
, pp. 1451-1452
-
-
Librado, P.1
Rozas, J.2
-
44
-
-
0024313579
-
Statistical method for testing the neutral mutation hypothesis by DNA polymorphism
-
Tajima F, (1989) Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123: 585-595.
-
(1989)
Genetics
, vol.123
, pp. 585-595
-
-
Tajima, F.1
-
45
-
-
0036137328
-
Sequence type analysis and recombinational tests (START)
-
Jolley KA, Feil EJ, Chan MS, Maiden MC, (2001) Sequence type analysis and recombinational tests (START). Bioinformatics 17: 1230-1231.
-
(2001)
Bioinformatics
, vol.17
, pp. 1230-1231
-
-
Jolley, K.A.1
Feil, E.J.2
Chan, M.S.3
Maiden, M.C.4
-
46
-
-
0041386108
-
MrBayes 3: Bayesian phylogenetic inference under mixed models
-
Ronquist F, Huelsenbeck JP, (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572-1574.
-
(2003)
Bioinformatics
, vol.19
, pp. 1572-1574
-
-
Ronquist, F.1
Huelsenbeck, J.P.2
-
47
-
-
45849154165
-
jModelTest: phylogenetic model averaging
-
Posada D, (2008) jModelTest: phylogenetic model averaging. Mol Biol Evol 25: 1253-1256.
-
(2008)
Mol Biol Evol
, vol.25
, pp. 1253-1256
-
-
Posada, D.1
-
48
-
-
77950806408
-
New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0
-
Guindon S, Dufayard JF, Lefort V, Anisimova M, Hordijk W, et al. (2010) New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Syst Biol 59: 307-321.
-
(2010)
Syst Biol
, vol.59
, pp. 307-321
-
-
Guindon, S.1
Dufayard, J.F.2
Lefort, V.3
Anisimova, M.4
Hordijk, W.5
-
49
-
-
0032766857
-
Multiple comparisons of log-likelihoods with applications to phylogenetic inference
-
Shimodaira H, Hasegawa M, (1999) Multiple comparisons of log-likelihoods with applications to phylogenetic inference. Mol Biol Evol 16: 1114-1116.
-
(1999)
Mol Biol Evol
, vol.16
, pp. 1114-1116
-
-
Shimodaira, H.1
Hasegawa, M.2
-
50
-
-
0036205377
-
TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing
-
Schmidt HA, Strimmer K, Vingron M, von Haeseler A, (2002) TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing. Bioinformatics 18: 502-504.
-
(2002)
Bioinformatics
, vol.18
, pp. 502-504
-
-
Schmidt, H.A.1
Strimmer, K.2
Vingron, M.3
von Haeseler, A.4
-
51
-
-
84863230041
-
Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species
-
Kim OS, Cho YJ, Lee K, Yoon SH, Kim M, et al. (2012) Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. Int J Syst Evol Microbiol 62: 716-721.
-
(2012)
Int J Syst Evol Microbiol
, vol.62
, pp. 716-721
-
-
Kim, O.S.1
Cho, Y.J.2
Lee, K.3
Yoon, S.H.4
Kim, M.5
-
52
-
-
0023375195
-
The neighbor-joining method: a new method for reconstructing phylogenetic trees
-
Saitou N, Nei M, (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4: 406-425.
-
(1987)
Mol Biol Evol
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
53
-
-
79957613599
-
MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
-
Tamura K, Peterson D, Peterson N, Stecher G, Nei M, et al. (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28: 2731-2739.
-
(2011)
Mol Biol Evol
, vol.28
, pp. 2731-2739
-
-
Tamura, K.1
Peterson, D.2
Peterson, N.3
Stecher, G.4
Nei, M.5
-
54
-
-
0000732090
-
Evolution of protein molecules
-
Munro HN, editor, New York: Academic Press
-
Jukes TH, Cantor CR (1969) Evolution of protein molecules. In: Munro HN, editor. Mammalian Protein Metabolism. New York: Academic Press. 21-132.
-
(1969)
Mammalian Protein Metabolism
, pp. 21-132
-
-
Jukes, T.H.1
Cantor, C.R.2
-
55
-
-
30744470609
-
Application of phylogenetic networks in evolutionary studies
-
Huson DH, Bryant D, (2006) Application of phylogenetic networks in evolutionary studies. Mol Biol Evol 23: 254-267.
-
(2006)
Mol Biol Evol
, vol.23
, pp. 254-267
-
-
Huson, D.H.1
Bryant, D.2
-
56
-
-
0031678692
-
SplitsTree: analyzing and visualizing evolutionary data
-
Huson DH, (1998) SplitsTree: analyzing and visualizing evolutionary data. Bioinformatics 14: 68-73.
-
(1998)
Bioinformatics
, vol.14
, pp. 68-73
-
-
Huson, D.H.1
-
57
-
-
33646167864
-
A quick and robust statistical test to detect the presence of recombination
-
Bruen T, Philippe H, Bryant D, (2006) A quick and robust statistical test to detect the presence of recombination. Genetics 172: 2665-2681.
-
(2006)
Genetics
, vol.172
, pp. 2665-2681
-
-
Bruen, T.1
Philippe, H.2
Bryant, D.3
-
58
-
-
77957243284
-
RDP3: a flexible and fast computer program for analyzing recombination
-
Martin DP, Lemey P, Lott M, Moulton V, Posada D, et al. (2010) RDP3: a flexible and fast computer program for analyzing recombination. Bioinformatics 26: 2462-2463.
-
(2010)
Bioinformatics
, vol.26
, pp. 2462-2463
-
-
Martin, D.P.1
Lemey, P.2
Lott, M.3
Moulton, V.4
Posada, D.5
-
59
-
-
0033824415
-
RDP: detection of recombination amongst aligned sequences
-
Martin D, Rybicki E, (2000) RDP: detection of recombination amongst aligned sequences. Bioinformatics 16: 562-563.
-
(2000)
Bioinformatics
, vol.16
, pp. 562-563
-
-
Martin, D.1
Rybicki, E.2
-
60
-
-
13144283628
-
A modified BOOTSCAN algorithm for automated identification of recombinant sequences and recombination breakpoints
-
Martin DP, Posada D, Crandall KA, Williamson C, (2005) A modified BOOTSCAN algorithm for automated identification of recombinant sequences and recombination breakpoints. AIDS Res Hum Retroviruses 21: 98-102.
-
(2005)
AIDS Res Hum Retroviruses
, vol.21
, pp. 98-102
-
-
Martin, D.P.1
Posada, D.2
Crandall, K.A.3
Williamson, C.4
-
61
-
-
0026708873
-
Analyzing the mosaic structure of genes
-
Smith JM, (1992) Analyzing the mosaic structure of genes. J Mol Evol 34: 126-129.
-
(1992)
J Mol Evol
, vol.34
, pp. 126-129
-
-
Smith, J.M.1
-
62
-
-
0035923699
-
Evaluation of methods for detecting recombination from DNA sequences: computer simulations
-
Posada D, Crandall KA, (2001) Evaluation of methods for detecting recombination from DNA sequences: computer simulations. Proc Natl Acad Sci USA 98: 13757-13762.
-
(2001)
Proc Natl Acad Sci USA
, vol.98
, pp. 13757-13762
-
-
Posada, D.1
Crandall, K.A.2
-
63
-
-
0033590220
-
Possible emergence of new geminiviruses by frequent recombination
-
Padidam M, Sawyer S, Fauquet CM, (1999) Possible emergence of new geminiviruses by frequent recombination. Virology 265: 218-225.
-
(1999)
Virology
, vol.265
, pp. 218-225
-
-
Padidam, M.1
Sawyer, S.2
Fauquet, C.M.3
-
64
-
-
0033753825
-
Sister-Scanning: a Monte Carlo procedure for assessing signals in recombinant sequences
-
Gibbs MJ, Armstrong JS, Gibbs AJ, (2000) Sister-Scanning: a Monte Carlo procedure for assessing signals in recombinant sequences. Bioinformatics 16: 573-582.
-
(2000)
Bioinformatics
, vol.16
, pp. 573-582
-
-
Gibbs, M.J.1
Armstrong, J.S.2
Gibbs, A.J.3
-
65
-
-
34250757252
-
An exact nonparametric method for inferring mosaic structure in sequence triplets
-
Boni MF, Posada D, Feldman MW, (2007) An exact nonparametric method for inferring mosaic structure in sequence triplets. Genetics 176: 1035-1047.
-
(2007)
Genetics
, vol.176
, pp. 1035-1047
-
-
Boni, M.F.1
Posada, D.2
Feldman, M.W.3
-
66
-
-
79959463018
-
Tridimensional model structure and patterns of molecular evolution of Pepino mosaic virus TGBp3 protein
-
Hasiów-Jaroszewska B, Czerwoniec A, Pospieszny H, Elena SF, (2011) Tridimensional model structure and patterns of molecular evolution of Pepino mosaic virus TGBp3 protein. Virol J 8: 318.
-
(2011)
Virol J
, vol.8
, pp. 318
-
-
Hasiów-Jaroszewska, B.1
Czerwoniec, A.2
Pospieszny, H.3
Elena, S.F.4
-
67
-
-
0033664744
-
LIAN 3.0: detecting linkage disequilibrium in multilocus data
-
Haubold H, Hudson RR, (2000) LIAN 3.0: detecting linkage disequilibrium in multilocus data. Bioinformatics 16: 847-848.
-
(2000)
Bioinformatics
, vol.16
, pp. 847-848
-
-
Haubold, H.1
Hudson, R.R.2
-
68
-
-
0036199914
-
A coalescent-based method for detecting and estimating recombination from gene sequences
-
McVean G, Awadalla P, Fearnhead P, (2002) A coalescent-based method for detecting and estimating recombination from gene sequences. Genetics 160: 1231-1241.
-
(2002)
Genetics
, vol.160
, pp. 1231-1241
-
-
McVean, G.1
Awadalla, P.2
Fearnhead, P.3
-
69
-
-
33748713890
-
UniFrac - An online tool for comparing microbial community diversity in a phylogenetic context
-
Lozupone C, Hamady M, Knight R, (2006) UniFrac - An online tool for comparing microbial community diversity in a phylogenetic context. BMC Bioinformatics 7: 371.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 371
-
-
Lozupone, C.1
Hamady, M.2
Knight, R.3
-
70
-
-
29144464937
-
UniFrac: a new phylogenetic method for comparing microbial communities
-
Lozupone C, Knight R, (2005) UniFrac: a new phylogenetic method for comparing microbial communities. Appl Environ Microbiol 71: 8228-8235.
-
(2005)
Appl Environ Microbiol
, vol.71
, pp. 8228-8235
-
-
Lozupone, C.1
Knight, R.2
-
71
-
-
0028028182
-
A place for DNA-DNA reassociation and 16S ribosomal-RNA sequence-analysis in the present species definition in bacteriology
-
Stackebrandt E, Goebel BM, (1994) A place for DNA-DNA reassociation and 16S ribosomal-RNA sequence-analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44: 846-849.
-
(1994)
Int J Syst Bacteriol
, vol.44
, pp. 846-849
-
-
Stackebrandt, E.1
Goebel, B.M.2
-
72
-
-
33947302827
-
Taxonomic parameters revisited: tarnished gold standards
-
Stackebrandt E, Ebers J, (2006) Taxonomic parameters revisited: tarnished gold standards. Microbiol Today 33: 152-155.
-
(2006)
Microbiol Today
, vol.33
, pp. 152-155
-
-
Stackebrandt, E.1
Ebers, J.2
-
73
-
-
9244220669
-
The ecology and genetics of microbial diversity
-
Kassen R, Rainey PB, (2004) The ecology and genetics of microbial diversity. Annu Rev Microbiol 58: 207-231.
-
(2004)
Annu Rev Microbiol
, vol.58
, pp. 207-231
-
-
Kassen, R.1
Rainey, P.B.2
-
74
-
-
0029186306
-
The secret life of foliar bacterial pathogens on leaves
-
Beattie GA, Lindow SE, (1995) The secret life of foliar bacterial pathogens on leaves. Annu Rev Phytopathol 33: 145-172.
-
(1995)
Annu Rev Phytopathol
, vol.33
, pp. 145-172
-
-
Beattie, G.A.1
Lindow, S.E.2
-
75
-
-
0033140434
-
Adaptation of Pseudomonas fluorescens to the plant rhizosphere
-
Rainey PB, (1999) Adaptation of Pseudomonas fluorescens to the plant rhizosphere. Environ Microbiol 1: 243-257.
-
(1999)
Environ Microbiol
, vol.1
, pp. 243-257
-
-
Rainey, P.B.1
-
76
-
-
78650490181
-
Comparative analysis of metabolic networks provides insight into the evolution of plant pathogenic and nonpathogenic lifestyles in Pseudomonas
-
Mithani A, Hein J, Preston GM, (2011) Comparative analysis of metabolic networks provides insight into the evolution of plant pathogenic and nonpathogenic lifestyles in Pseudomonas. Mol Biol Evol 28: 483-499.
-
(2011)
Mol Biol Evol
, vol.28
, pp. 483-499
-
-
Mithani, A.1
Hein, J.2
Preston, G.M.3
-
77
-
-
0032903189
-
Effect of nectar on microbial antagonists evaluated for use in control of fire blight of pome fruits
-
Pusey PL, (1999) Effect of nectar on microbial antagonists evaluated for use in control of fire blight of pome fruits. Phytopathology 80: 39-46.
-
(1999)
Phytopathology
, vol.80
, pp. 39-46
-
-
Pusey, P.L.1
-
78
-
-
3843102542
-
Comparative genetic diversity of Pseudomonas stutzeri genomovars, clonal structure, and phylogeny of the species
-
Cladera AM, Bennasar A, Barceló M, Lalucat J, García-Valdés E, (2004) Comparative genetic diversity of Pseudomonas stutzeri genomovars, clonal structure, and phylogeny of the species. J Bacteriol 186: 5239-5248.
-
(2004)
J Bacteriol
, vol.186
, pp. 5239-5248
-
-
Cladera, A.M.1
Bennasar, A.2
Barceló, M.3
Lalucat, J.4
García-Valdés, E.5
-
79
-
-
1642319596
-
Evolution of the core genome of Pseudomonas syringae, a highly clonal, endemic plant pathogen
-
Sarkar SF, Guttman DS, (2004) Evolution of the core genome of Pseudomonas syringae, a highly clonal, endemic plant pathogen. Appl Environ Microbiol 70: 1999-2012.
-
(2004)
Appl Environ Microbiol
, vol.70
, pp. 1999-2012
-
-
Sarkar, S.F.1
Guttman, D.S.2
-
80
-
-
34447296239
-
Multilocus sequence analysis of biocontrol fluorescent Pseudomonas spp. producing the antifungal compound 2,4-diacetylphloroglucinol
-
Frapolli M, Défago G, Moënne-Loccoz Y, (2007) Multilocus sequence analysis of biocontrol fluorescent Pseudomonas spp. producing the antifungal compound 2,4-diacetylphloroglucinol. Environ Microbiol 9: 1939-1955.
-
(2007)
Environ Microbiol
, vol.9
, pp. 1939-1955
-
-
Frapolli, M.1
Défago, G.2
Moënne-Loccoz, Y.3
-
81
-
-
84859813618
-
Evolutionary history of synthesis pathway genes for phloroglucinol and cyanide antimicrobials in plant-associated fluorescent pseudomonads
-
Frapolli M, Pothier JF, Défago G, Moënne-Loccoz Y, (2012) Evolutionary history of synthesis pathway genes for phloroglucinol and cyanide antimicrobials in plant-associated fluorescent pseudomonads. Mol Phylogenet Evol 63: 877-890.
-
(2012)
Mol Phylogenet Evol
, vol.63
, pp. 877-890
-
-
Frapolli, M.1
Pothier, J.F.2
Défago, G.3
Moënne-Loccoz, Y.4
-
82
-
-
80054809723
-
Clonality, genetic diversity and support for the diversifying selection hypothesis in natural populations of a flower-living yeast
-
Herrera CM, Pozo MI, Bazaga P, (2011) Clonality, genetic diversity and support for the diversifying selection hypothesis in natural populations of a flower-living yeast. Mol Ecol 20: 4395-4407.
-
(2011)
Mol Ecol
, vol.20
, pp. 4395-4407
-
-
Herrera, C.M.1
Pozo, M.I.2
Bazaga, P.3
-
83
-
-
80053182616
-
A long-branch attraction artifact reveals an adaptive radiation in Pseudomonas
-
Bodilis J, Meilo SN, Cornelis P, De Vos P, Barray S, (2011) A long-branch attraction artifact reveals an adaptive radiation in Pseudomonas. Mol Biol Evol 28: 2723-2726.
-
(2011)
Mol Biol Evol
, vol.28
, pp. 2723-2726
-
-
Bodilis, J.1
Meilo, S.N.2
Cornelis, P.3
De Vos, P.4
Barray, S.5
-
84
-
-
84892492925
-
Extensive genomic variation within clonal bacterial groups resulted from homologous recombination
-
Hao W, (2013) Extensive genomic variation within clonal bacterial groups resulted from homologous recombination. Mob Genet Elements 3: e23463.
-
(2013)
Mob Genet Elements
, vol.3
-
-
Hao, W.1
-
85
-
-
58549084151
-
A comparison of homologous recombination rates in bacteria and archaea
-
Vos M, Didelot X, (2009) A comparison of homologous recombination rates in bacteria and archaea. ISME J 3: 199-208.
-
(2009)
ISME J
, vol.3
, pp. 199-208
-
-
Vos, M.1
Didelot, X.2
-
86
-
-
0037256292
-
Population structure analysis of Burkholderia cepacia genomovar III: varying degrees of genetic recombination characterize major clonal complexes
-
Coenye T, LiPuma JJ, (2002) Population structure analysis of Burkholderia cepacia genomovar III: varying degrees of genetic recombination characterize major clonal complexes. Microbiology 149: 77-88.
-
(2002)
Microbiology
, vol.149
, pp. 77-88
-
-
Coenye, T.1
LiPuma, J.J.2
-
87
-
-
33645539749
-
Frequent recombination and low level of clonality within Salmonella enterica subspecies I
-
Octavia S, Lan R, (2006) Frequent recombination and low level of clonality within Salmonella enterica subspecies I. Microbiology. 152: 1099-1108.
-
(2006)
Microbiology
, vol.152
, pp. 1099-1108
-
-
Octavia, S.1
Lan, R.2
-
88
-
-
33144459447
-
Multiple-locus sequence typing analysis of Bacillus cereus and Bacillus thuringiensis reveals separate clustering and a distinct population structure of psychrotrophic strains
-
Sorokin A, Candelon B, Guilloux K, Galleron N, Wackerow-Kouzova N, et al. (2006) Multiple-locus sequence typing analysis of Bacillus cereus and Bacillus thuringiensis reveals separate clustering and a distinct population structure of psychrotrophic strains. Appl Environ Microbiol 72: 1569-1578.
-
(2006)
Appl Environ Microbiol
, vol.72
, pp. 1569-1578
-
-
Sorokin, A.1
Candelon, B.2
Guilloux, K.3
Galleron, N.4
Wackerow-Kouzova, N.5
-
89
-
-
84859894446
-
Contrasting recombination patterns and demographic histories of the plant pathogen Ralstonia solanacearum inferred from MLSA
-
Wicker E, Lefeuvre P, de Cambiaire J-C, Lemaire C, Poussier S, et al. (2012) Contrasting recombination patterns and demographic histories of the plant pathogen Ralstonia solanacearum inferred from MLSA. ISME J 6: 961-974.
-
(2012)
ISME J
, vol.6
, pp. 961-974
-
-
Wicker, E.1
Lefeuvre, P.2
de Cambiaire, J.-C.3
Lemaire, C.4
Poussier, S.5
-
90
-
-
23844548532
-
Clonality and recombination in genetically differentiated subgroups of Cryptococcus gattii
-
Campbell LT, Currie BJ, Krockenberger M, Malik R, Meyer W, et al. (2005) Clonality and recombination in genetically differentiated subgroups of Cryptococcus gattii. Eukaryot Cell 4: 1403-1409.
-
(2005)
Eukaryot Cell
, vol.4
, pp. 1403-1409
-
-
Campbell, L.T.1
Currie, B.J.2
Krockenberger, M.3
Malik, R.4
Meyer, W.5
-
91
-
-
77958139482
-
Clonality and recombination in the life history of an asexual arbuscular mycorrhizal fungus
-
den Bakker HC, VanKuren NW, Morton JB, Pawlowska TE, (2010) Clonality and recombination in the life history of an asexual arbuscular mycorrhizal fungus. Mol Biol Evol 27: 2474-2486.
-
(2010)
Mol Biol Evol
, vol.27
, pp. 2474-2486
-
-
den Bakker, H.C.1
VanKuren, N.W.2
Morton, J.B.3
Pawlowska, T.E.4
-
92
-
-
33751202973
-
Towards a conceptual and operational union of bacterial systematics, ecology, and evolution
-
Cohan FM, (2006) Towards a conceptual and operational union of bacterial systematics, ecology, and evolution. Philos Trans R Soc Lond B Biol Sci 361: 1985-1996.
-
(2006)
Philos Trans R Soc Lond B Biol Sci
, vol.361
, pp. 1985-1996
-
-
Cohan, F.M.1
-
93
-
-
18544410852
-
Metschnikowia vanudenii sp. nov. and Metschnikowia lachancei sp. nov., from flowers and associated insects in North America
-
Giménez-Jurado G, Kurtzman CP, Starmer WT, Spencer-Martins I, (2003) Metschnikowia vanudenii sp. nov. and Metschnikowia lachancei sp. nov., from flowers and associated insects in North America. Int J Syst Evol Microbiol 53: 1665-1670.
-
(2003)
Int J Syst Evol Microbiol
, vol.53
, pp. 1665-1670
-
-
Giménez-Jurado, G.1
Kurtzman, C.P.2
Starmer, W.T.3
Spencer-Martins, I.4
-
94
-
-
34247641850
-
Candida gelsemii sp. nov., a yeast of the Metschnikowiaceae clade isolated from nectar of the poisonous Carolina jessamine
-
Manson JS, Lachance MA, Thomson JD, (2007) Candida gelsemii sp. nov., a yeast of the Metschnikowiaceae clade isolated from nectar of the poisonous Carolina jessamine. Antonie Van Leeuwenhoek 92: 37-42.
-
(2007)
Antonie Van Leeuwenhoek
, vol.92
, pp. 37-42
-
-
Manson, J.S.1
Lachance, M.A.2
Thomson, J.D.3
-
95
-
-
84867163627
-
Metschnikowia proteae sp. nov., a nectarivorous insect-associated yeast species from Africa
-
de Vega C, Guzmán B, Lachance MA, Steenhuisen SL, Johnson SD, et al. (2012) Metschnikowia proteae sp. nov., a nectarivorous insect-associated yeast species from Africa. Int J Syst Evol Microbiol 62: 2538-2545.
-
(2012)
Int J Syst Evol Microbiol
, vol.62
, pp. 2538-2545
-
-
de Vega, C.1
Guzmán, B.2
Lachance, M.A.3
Steenhuisen, S.L.4
Johnson, S.D.5
-
96
-
-
84873121353
-
Acinetobacter nectaris sp. nov. and Acinetobacter boissieri sp. nov., isolated from floral nectar of wild Mediterranean insect-pollinated plants
-
Álvarez-Pérez S, Lievens B, Jacquemyn H, Herrera CM, (2013) Acinetobacter nectaris sp. nov. and Acinetobacter boissieri sp. nov., isolated from floral nectar of wild Mediterranean insect-pollinated plants. Int J Syst Evol Microbiol 63: 1532-1539.
-
(2013)
Int J Syst Evol Microbiol
, vol.63
, pp. 1532-1539
-
-
Álvarez-Pérez, S.1
Lievens, B.2
Jacquemyn, H.3
Herrera, C.M.4
-
97
-
-
84856233951
-
Floral traits affecting fire blight infection and management
-
Farkas A, Mihalik E, Dorgai L, Bubán T, (2012) Floral traits affecting fire blight infection and management. Trees 26: 47-66.
-
(2012)
Trees
, vol.26
, pp. 47-66
-
-
Farkas, A.1
Mihalik, E.2
Dorgai, L.3
Bubán, T.4
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