메뉴 건너뛰기




Volumn 19, Issue 5, 2009, Pages 744-756

On the origin of prokaryotic species

Author keywords

[No Author keywords available]

Indexed keywords

DNA DNA HYBRIDIZATION; DNA EXTRACTION; ECOLOGY; ECOSYSTEM; EVOLUTION; GENETIC VARIABILITY; GENOTYPE; NONHUMAN; PHENOTYPE; POPULATION GENETICS; PRIORITY JOURNAL; PROKARYOTE; REVIEW; RNA SEQUENCE;

EID: 66049089612     PISSN: 10889051     EISSN: 15495469     Source Type: Journal    
DOI: 10.1101/gr.086645.108     Document Type: Review
Times cited : (168)

References (111)
  • 2
    • 43849089834 scopus 로고    scopus 로고
    • Microbial diversity and the genetic nature of microbial species
    • Achtman, M. and Wagner, M. 2008. Microbial diversity and the genetic nature of microbial species. Nat. Rev. Microbiol. 6: 431-440.
    • (2008) Nat. Rev. Microbiol. , vol.6 , pp. 431-440
    • Achtman, M.1    Wagner, M.2
  • 5
    • 0037115902 scopus 로고    scopus 로고
    • Helicobacter pylori interstrain restriction-modification diversity prevents genome subversion by chromosomal DNA from competing strains
    • DOI 10.1093/nar/gkf686
    • Aras, R.A., Small, A.J., Ando, T., and Blaser, M.J. 2002. Helicobacter pylori interstrain restriction-modification diversity prevents genome subversion by chromosomal DNA from competing strains. Nucleic Acids Res. 30: 5391-5397. (Pubitemid 36113916)
    • (2002) Nucleic Acids Research , vol.30 , Issue.24 , pp. 5391-5397
    • Aras, R.A.1    Small, A.J.2    Ando, T.3    Blaser, M.J.4
  • 8
    • 0036899896 scopus 로고    scopus 로고
    • Evolution of microbial genomes: Sequence acquisition and loss
    • Berg, O.G. and Kurland, C.G. 2002. Evolution of microbial genomes: Sequence acquisition and loss. Mol. Biol. Evol. 19: 2265-2276.
    • (2002) Mol. Biol. Evol. , vol.19 , pp. 2265-2276
    • Berg, O.G.1    Kurland, C.G.2
  • 9
    • 57349116172 scopus 로고    scopus 로고
    • Shaping a bacterial genome by large chromosomal replacements, the evolutionary history of Streptococcus agalactiae
    • Brochet, M., Rusniok, C., Couve, E., Dramsi, S., Poyart, C., Trieu-Cuot, P., Kunst, F., and Glaser, P. 2008. Shaping a bacterial genome by large chromosomal replacements, the evolutionary history of Streptococcus agalactiae. Proc. Natl. Acad. Sci. 105: 15961-15966.
    • (2008) Proc. Natl. Acad. Sci. , vol.105 , pp. 15961-15966
    • Brochet, M.1    Rusniok, C.2    Couve, E.3    Dramsi, S.4    Poyart, C.5    Trieu-Cuot, P.6    Kunst, F.7    Glaser, P.8
  • 10
    • 33845654362 scopus 로고    scopus 로고
    • Non-canonical CRP sites control competence regulons in Escherichia coli and many other gamma-proteobacteria
    • Cameron, A.D. and Redfield, R.J. 2006. Non-canonical CRP sites control competence regulons in Escherichia coli and many other gamma-proteobacteria. Nucleic Acids Res. 34: 6001-6014.
    • (2006) Nucleic Acids Res. , vol.34 , pp. 6001-6014
    • Cameron, A.D.1    Redfield, R.J.2
  • 11
    • 33751202973 scopus 로고    scopus 로고
    • Towards a conceptual and operational union of bacterial systematics, ecology, and evolution
    • Cohan, F.M. 2006. Towards a conceptual and operational union of bacterial systematics, ecology, and evolution. Philos. Trans. R. Soc. Lond. B Biol. Sci. 361: 1985-1996.
    • (2006) Philos. Trans. R. Soc. Lond. B Biol. Sci. , vol.361 , pp. 1985-1996
    • Cohan, F.M.1
  • 12
    • 34247884459 scopus 로고    scopus 로고
    • A Systematics for Discovering the Fundamental Units of Bacterial Diversity
    • DOI 10.1016/j.cub.2007.03.032, PII S0960982207011347
    • Cohan, F.M. and Perry, E.B. 2007. A systematics for discovering the fundamental units of bacterial diversity. Curr. Biol. 17: R373-R386. (Pubitemid 46702658)
    • (2007) Current Biology , vol.17 , Issue.10
    • Cohan, F.M.1    Perry, E.B.2
  • 13
    • 3042750437 scopus 로고    scopus 로고
    • Sinauer Associates, Sunderland, MA
    • Coyne, J.A. and Orr, H.A. 2004. Speciation. Sinauer Associates, Sunderland, MA.
    • (2004) Speciation
    • Coyne, J.A.1    Orr, H.A.2
  • 17
    • 36249004900 scopus 로고    scopus 로고
    • Species concepts and species delimitation
    • DOI 10.1080/10635150701701083, PII 785834893
    • de Queiroz, K. 2007. Species concepts and species delimitation. Syst. Biol. 56: 879-886. (Pubitemid 350129638)
    • (2007) Systematic Biology , vol.56 , Issue.6 , pp. 879-886
    • De Queiroz, K.1
  • 19
    • 33646204788 scopus 로고    scopus 로고
    • Clonal interference and the periodic selection of new beneficial mutations in Escherichia coli
    • de Visser, J.A. and Rozen, D.E. 2006. Clonal interference and the periodic selection of new beneficial mutations in Escherichia coli. Genetics 172: 2093-2100.
    • (2006) Genetics , vol.172 , pp. 2093-2100
    • De Visser, J.A.1    Rozen, D.E.2
  • 20
    • 25144484500 scopus 로고    scopus 로고
    • Comparative phylogenomics of pathogenic bacteria by microarray analysis
    • DOI 10.1016/j.mib.2005.08.012, PII S1369527405001281, Antimicrobials / Genomics
    • Dorrell, N., Hinchliffe, S.J., and Wren, B.W. 2005. Comparative phylogenomics of pathogenic bacteria by microarray analysis. Curr. Opin. Microbiol. 8: 620-626. (Pubitemid 41355045)
    • (2005) Current Opinion in Microbiology , vol.8 , Issue.5 , pp. 620-626
    • Dorrell, N.1    Hinchliffe, S.J.2    Wren, B.W.3
  • 22
    • 0025788069 scopus 로고
    • Recombination in Escherichia coli and the definition of biological species
    • Dykhuizen, D.E. and Green, L. 1991. Recombination in Escherichia coli and the definition of biological species. J. Bacteriol. 173: 7257-7268.
    • (1991) J. Bacteriol. , vol.173 , pp. 7257-7268
    • Dykhuizen, D.E.1    Green, L.2
  • 23
    • 44649133867 scopus 로고    scopus 로고
    • Ecology and genomics of Bacillus subtilis
    • Earl, A.M., Losick, R., and Kolter, R. 2008. Ecology and genomics of Bacillus subtilis. Trends Microbiol. 16: 269-275.
    • (2008) Trends Microbiol. , vol.16 , pp. 269-275
    • Earl, A.M.1    Losick, R.2    Kolter, R.3
  • 24
    • 0006002426 scopus 로고
    • Eliminative pluralism
    • Ereshefsky, M. 1992. Eliminative pluralism. Philos. Sci. 59: 671-690.
    • (1992) Philos. Sci. , vol.59 , pp. 671-690
    • Ereshefsky, M.1
  • 25
    • 0043145064 scopus 로고    scopus 로고
    • Species Pluralism and Anti-Realism
    • Ereshefsky, M. 1998. Species pluralism and anti-realism. Philos. Sci. 65: 103-120. (Pubitemid 128461343)
    • (1998) Philosophy of Science , vol.65 , Issue.1 , pp. 103-120
    • Ereshefsky, M.1
  • 26
    • 0035909914 scopus 로고    scopus 로고
    • Recombination and mutation during long-term gastric colonization by Helicobacter pylori: Estimates of clock rates, recombination size, and minimal age
    • Falush, D., Kraft, C., Taylor, N.S., Correa, P., Fox, J.G., Achtman, M., and Suerbaum, S. 2001. Recombination and mutation during long-term gastric colonization by Helicobacter pylori: Estimates of clock rates, recombination size, and minimal age. Proc. Natl. Acad. Sci. 98: 15056-15061.
    • (2001) Proc. Natl. Acad. Sci. , vol.98 , pp. 15056-15061
    • Falush, D.1    Kraft, C.2    Taylor, N.S.3    Correa, P.4    Fox, J.G.5    Achtman, M.6    Suerbaum, S.7
  • 28
    • 35348878751 scopus 로고    scopus 로고
    • Bacteria, sex and systematics
    • Franklin, L.R. 2007. Bacteria, sex and systematics. Philos. Sci. 74: 69-95.
    • (2007) Philos. Sci. , vol.74 , pp. 69-95
    • Franklin, L.R.1
  • 29
    • 33846625056 scopus 로고    scopus 로고
    • Recombination and the nature of bacterial speciation
    • Fraser, C., Hanage, W.P., and Spratt, B.G. 2007. Recombination and the nature of bacterial speciation. Science 315: 476-480.
    • (2007) Science , vol.315 , pp. 476-480
    • Fraser, C.1    Hanage, W.P.2    Spratt, B.G.3
  • 30
    • 2542583245 scopus 로고    scopus 로고
    • The fate of competing beneficial mutations in an asexual population
    • Gerrish, P.J. and Lenski, R.E. 1998. The fate of competing beneficial mutations in an asexual population. Genetica 102-103: 127-144.
    • (1998) Genetica , vol.102-103 , pp. 127-144
    • Gerrish, P.J.1    Lenski, R.E.2
  • 33
    • 3242877690 scopus 로고    scopus 로고
    • Evolutionary biology: Oceans of bacteria
    • Giovannoni, S. 2004. Evolutionary biology: Oceans of bacteria. Nature 430: 515-516.
    • (2004) Nature , vol.430 , pp. 515-516
    • Giovannoni, S.1
  • 34
    • 0033754255 scopus 로고    scopus 로고
    • Comparative 16S rRNA analysis of lake bacterioplankton reveals globally distributed phylogenetic clusters including an abundant group of actinobacteria
    • Glockner, F.O., Zaichikov, E., Belkova, N., Denissova, L., Pernthaler, J., Pernthaler, A., and Amann, R. 2000. Comparative 16S rRNA analysis of lake bacterioplankton reveals globally distributed phylogenetic clusters including an abundant group of actinobacteria. Appl. Environ. Microbiol. 66: 5053-5065.
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 5053-5065
    • Glockner, F.O.1    Zaichikov, E.2    Belkova, N.3    Denissova, L.4    Pernthaler, J.5    Pernthaler, A.6    Amann, R.7
  • 36
    • 22144486947 scopus 로고    scopus 로고
    • Fuzzy species among recombinogenic bacteria
    • DOI 10.1186/1741-7007-3-6
    • Hanage, W.P., Fraser, C., and Spratt, B.G. 2005. Fuzzy species among recombinogenic bacteria. BMC Biol. 3: 6. doi: 10.1186/1741-7007-3-6. (Pubitemid 41534978)
    • (2005) BMC Biology , vol.3 , pp. 6
    • Hanage, W.P.1    Fraser, C.2    Spratt, B.G.3
  • 39
    • 33745172155 scopus 로고    scopus 로고
    • The fate of laterally transferred genes: Life in the fast lane to adaptation or death
    • Hao, W. and Golding, G.B. 2006. The fate of laterally transferred genes: Life in the fast lane to adaptation or death. Genome Res. 16: 636-643.
    • (2006) Genome Res. , vol.16 , pp. 636-643
    • Hao, W.1    Golding, G.B.2
  • 40
    • 45249114886 scopus 로고    scopus 로고
    • Uncovering rate variation of lateral gene transfer during bacterial genome evolution
    • doi: 10.1186/1471-2164-9-235
    • Hao, W. and Golding, G.B. 2008. Uncovering rate variation of lateral gene transfer during bacterial genome evolution. BMC Genomics 9: 235. doi: 10.1186/1471-2164-9-235.
    • (2008) BMC Genomics , vol.9 , pp. 235
    • Hao, W.1    Golding, G.B.2
  • 43
    • 44449178480 scopus 로고    scopus 로고
    • Resource partitioning and sympatric differentiation among closely related bacterioplankton
    • Hunt, D.E., David, L.A., Gevers, D., Preheim, S.P., Alm, E.J., and Polz, M.F. 2008. Resource partitioning and sympatric differentiation among closely related bacterioplankton. Science 320: 1081-1085.
    • (2008) Science , vol.320 , pp. 1081-1085
    • Hunt, D.E.1    David, L.A.2    Gevers, D.3    Preheim, S.P.4    Alm, E.J.5    Polz, M.F.6
  • 44
    • 4143136662 scopus 로고    scopus 로고
    • Ecological significance of microdiversity: Identical 16S rRNA gene sequences can be found in bacteria with highly divergent genomes and ecophysiologies
    • Jaspers, E. and Overmann, J. 2004. Ecological significance of microdiversity: Identical 16S rRNA gene sequences can be found in bacteria with highly divergent genomes and ecophysiologies. Appl. Environ. Microbiol. 70: 4831-4839.
    • (2004) Appl. Environ. Microbiol. , vol.70 , pp. 4831-4839
    • Jaspers, E.1    Overmann, J.2
  • 45
    • 33645216333 scopus 로고    scopus 로고
    • Niche partitioning among Prochlorococcus ecotypes along ocean-scale environmental gradients
    • Johnson, Z.I., Zinser, E.R., Coe, A., McNulty, N.P., Woodward, E.M., and Chisholm, S.W. 2006. Niche partitioning among Prochlorococcus ecotypes along ocean-scale environmental gradients. Science 311: 1737-1740.
    • (2006) Science , vol.311 , pp. 1737-1740
    • Johnson, Z.I.1    Zinser, E.R.2    Coe, A.3    McNulty, N.P.4    Woodward, E.M.5    Chisholm, S.W.6
  • 47
    • 0035883519 scopus 로고    scopus 로고
    • Behavior of restriction-modification systems as selfish mobile elements and their impact on genome evolution
    • Kobayashi, I. 2001. Behavior of restriction-modification systems as selfish mobile elements and their impact on genome evolution. Nucleic Acids Res. 29: 3742-3756. (Pubitemid 32910516)
    • (2001) Nucleic Acids Research , vol.29 , Issue.18 , pp. 3742-3756
    • Kobayashi, I.1
  • 51
    • 0034283229 scopus 로고    scopus 로고
    • Intraspecies variation in bacterial genomes: The need for a species genome concept
    • Lan, R. and Reeves, P.R. 2000. Intraspecies variation in bacterial genomes: The need for a species genome concept. Trends Microbiol. 8: 396-401.
    • (2000) Trends Microbiol. , vol.8 , pp. 396-401
    • Lan, R.1    Reeves, P.R.2
  • 52
    • 0036598066 scopus 로고    scopus 로고
    • Gene transfer in bacteria: Speciation without species?
    • Lawrence, J.G. 2002. Gene transfer in bacteria: Speciation without species? Theor. Popul. Biol. 61: 449-460.
    • (2002) Theor. Popul. Biol. , vol.61 , pp. 449-460
    • Lawrence, J.G.1
  • 53
    • 33746615552 scopus 로고    scopus 로고
    • Clonal adaptive radiation in a constant environment
    • Maharjan, R., Seeto, S., Notley-McRobb, L., and Ferenci, T. 2006. Clonal adaptive radiation in a constant environment. Science 313: 514-517.
    • (2006) Science , vol.313 , pp. 514-517
    • Maharjan, R.1    Seeto, S.2    Notley-McRobb, L.3    Ferenci, T.4
  • 55
    • 0033959357 scopus 로고    scopus 로고
    • Barriers to genetic exchange between bacterial species: Streptococcus pneumoniae transformation
    • Majewski, J., Zawadzki, P., Pickerill, P., Cohan, F.M., and Dowson, C.G. 2000. Barriers to genetic exchange between bacterial species: Streptococcus pneumoniae transformation. J. Bacteriol. 182: 1016-1023.
    • (2000) J. Bacteriol. , vol.182 , pp. 1016-1023
    • Majewski, J.1    Zawadzki, P.2    Pickerill, P.3    Cohan, F.M.4    Dowson, C.G.5
  • 56
    • 34247845269 scopus 로고    scopus 로고
    • Speciation in the 21st century
    • Mallet, J. 2005. Speciation in the 21st century. Heredity 95: 105-109.
    • (2005) Heredity , vol.95 , pp. 105-109
    • Mallet, J.1
  • 57
    • 34248179124 scopus 로고    scopus 로고
    • The role of laterally transferred genes in adaptive evolution
    • doi: 10.1186/1471-2148-7-S1-S8.
    • Marri, P.R., Hao, W., and Golding, G.B. 2007. The role of laterally transferred genes in adaptive evolution. BMC Evol. Biol. 7: S8. doi: 10.1186/1471-2148-7-S1-S8.
    • (2007) BMC Evol. Biol. , vol.7
    • Marri, P.R.1    Hao, W.2    Golding, G.B.3
  • 58
    • 0036324293 scopus 로고    scopus 로고
    • Phylogenetic approaches for describing and comparing the diversity of microbial communities
    • Martin, A.P. 2002. Phylogenetic approaches for describing and comparing the diversity of microbial communities. Appl. Environ. Microbiol. 68: 3673-3682.
    • (2002) Appl. Environ. Microbiol. , vol.68 , pp. 3673-3682
    • Martin, A.P.1
  • 59
    • 0034114417 scopus 로고    scopus 로고
    • A few cosmopolitan phylotypes dominate planktonic archaeal assemblages in widely different oceanic provinces
    • DOI 10.1128/AEM.66.5.1777-1787.2000
    • Massana, R., DeLong, E.F., and Pedros-Alio, C. 2000. A few cosmopolitan phylotypes dominate planktonic archaeal assemblages in widely different oceanic provinces. Appl. Environ. Microbiol. 66: 1777-1787. (Pubitemid 30253690)
    • (2000) Applied and Environmental Microbiology , vol.66 , Issue.5 , pp. 1777-1787
    • Massana, R.1    Delong, E.F.2    Pedros-Alio, C.3
  • 60
    • 33745112085 scopus 로고    scopus 로고
    • Genome-wide detection and analysis of homologous recombination among sequenced strains of Escherichia coli
    • DOI 10.1186/gb-2006-7-5-r44
    • Mau, B., Glasner, J.D., Darling, A.E., and Perna, N.T. 2006. Genome-wide detection and analysis of homologous recombination among sequenced strains of Escherichia coli. Genome Biol. 7: R44. doi: 10.1186/gb-2006-7-5-r44. (Pubitemid 43885060)
    • (2006) Genome Biology , vol.7 , Issue.5
    • Mau, B.1    Glasner, J.D.2    Darling, A.E.3    Perna, N.T.4
  • 61
    • 0000975852 scopus 로고    scopus 로고
    • What is a species, and what is not?
    • Mayr, E. 1996. What is a species, and what is not? Philos. Sci. 63: 262-277.
    • (1996) Philos. Sci. , vol.63 , pp. 262-277
    • Mayr, E.1
  • 64
    • 38149124678 scopus 로고    scopus 로고
    • Microbial diversity - Insights from population genetics
    • Mes, T.H. 2008. Microbial diversity - Insights from population genetics. Environ. Microbiol. 10: 251-264.
    • (2008) Environ. Microbiol. , vol.10 , pp. 251-264
    • Mes, T.H.1
  • 65
    • 0025133386 scopus 로고
    • Molecular evolution of the Escherichia coli chromosome. III. Clonal frames
    • Milkman, R. and Bridges, M.M. 1990. Molecular evolution of the Escherichia coli chromosome. III. Clonal frames. Genetics 126: 505-517.
    • (1990) Genetics , vol.126 , pp. 505-517
    • Milkman, R.1    Bridges, M.M.2
  • 66
    • 0000532468 scopus 로고
    • Individuality, pluralism, and the phylogenetic species concept
    • Mishler, B.D. and Brandon, R.N. 1987. Individuality, pluralism, and the phylogenetic species concept. Biol. Philos. 2: 397-414.
    • (1987) Biol. Philos. , vol.2 , pp. 397-414
    • Mishler, B.D.1    Brandon, R.N.2
  • 68
    • 33644749286 scopus 로고    scopus 로고
    • Recombination in Thermotoga: Implications for species concepts and biogeography
    • Nesbø, C.L., Dlutek, M., and Doolittle, W.F. 2006. Recombination in Thermotoga: Implications for species concepts and biogeography. Genetics 172: 759-769.
    • (2006) Genetics , vol.172 , pp. 759-769
    • Nesbø, C.L.1    Dlutek, M.2    Doolittle, W.F.3
  • 70
    • 0034682335 scopus 로고    scopus 로고
    • Lateral gene transfer and the nature of bacterial innovation
    • Ochman, H., Lawrence, J.G., and Groisman, E.A. 2000. Lateral gene transfer and the nature of bacterial innovation. Nature 405: 299-304.
    • (2000) Nature , vol.405 , pp. 299-304
    • Ochman, H.1    Lawrence, J.G.2    Groisman, E.A.3
  • 71
    • 0031430556 scopus 로고    scopus 로고
    • Population thinking and tree thinking in systematics
    • PII S0300325698000105
    • O'Hara, R.J. 1997. Population thinking and tree thinking in systematics. Zool. Scr. 26: 323-329. (Pubitemid 28224033)
    • (1997) Zoologica Scripta , vol.26 , Issue.4 , pp. 323-329
    • O'Hara, R.J.1
  • 72
    • 50149083715 scopus 로고    scopus 로고
    • 'Everything is everywhere: But the environment selects': Ubiquitous distribution and ecological determinism in microbial biogeography
    • O'Malley, M.A. 2008. 'Everything is everywhere: but the environment selects': Ubiquitous distribution and ecological determinism in microbial biogeography. Stud. Hist. Philos. Biol. Biomed. Sci. 39: 314-325.
    • (2008) Stud. Hist. Philos. Biol. Biomed. Sci. , vol.39 , pp. 314-325
    • O'Malley, M.A.1
  • 73
    • 33744982063 scopus 로고    scopus 로고
    • Time for a change
    • Pace, N.R. 2006. Time for a change. Nature 441: 289.
    • (2006) Nature , vol.441 , pp. 289
    • Pace, N.R.1
  • 74
    • 0242676230 scopus 로고    scopus 로고
    • Diversity of bacteriorhodopsins in different hypersaline waters from a single Spanish saltern
    • DOI 10.1046/j.1462-2920.2003.00501.x
    • Papke, R.T., Douady, C.J., Doolittle, W.F., and Rodriguez-Valera, F. 2003. Diversity of bacteriorhodopsins in different hypersaline waters from a single Spanish saltern. Environ. Microbiol. 5: 1039-1045. (Pubitemid 37417776)
    • (2003) Environmental Microbiology , vol.5 , Issue.11 , pp. 1039-1045
    • Papke, R.T.1    Douady, C.J.2    Doolittle, W.F.3    Rodriguez-Valera, F.4
  • 75
    • 10344243528 scopus 로고    scopus 로고
    • Frequent recombination in a saltern population of Halorubrum
    • Papke, R.T., Koenig, J.E., Rodriguez-Valera, F., and Doolittle, W.F. 2004. Frequent recombination in a saltern population of Halorubrum. Science 306: 1928-1929.
    • (2004) Science , vol.306 , pp. 1928-1929
    • Papke, R.T.1    Koenig, J.E.2    Rodriguez-Valera, F.3    Doolittle, W.F.4
  • 78
    • 48749116908 scopus 로고    scopus 로고
    • Phylogenetic analyses of ribosomal DNA-containing bacterioplankton genome fragments from a 4000 m vertical profile in the North Pacific Subtropical Gyre
    • Pham, V.D., Konstantinidis, K.T., Palden, T., and DeLong, E.F. 2008. Phylogenetic analyses of ribosomal DNA-containing bacterioplankton genome fragments from a 4000 m vertical profile in the North Pacific Subtropical Gyre. Environ. Microbiol. 10: 2313-2330.
    • (2008) Environ. Microbiol. , vol.10 , pp. 2313-2330
    • Pham, V.D.1    Konstantinidis, K.T.2    Palden, T.3    Delong, E.F.4
  • 80
    • 34548246020 scopus 로고    scopus 로고
    • Temporal fragmentation of speciation in bacteria
    • Retchless, A.C. and Lawrence, J.G. 2007. Temporal fragmentation of speciation in bacteria. Science 317: 1093-1096.
    • (2007) Science , vol.317 , pp. 1093-1096
    • Retchless, A.C.1    Lawrence, J.G.2
  • 81
    • 0036200876 scopus 로고    scopus 로고
    • Resolution of Prochlorococcus and Synechococcus ecotypes by using 16S-23S ribosomal DNA internal transcribed spacer sequences
    • DOI 10.1128/AEM.68.3.1180-1191.2002
    • Rocap, G., Distel, D.L., Waterbury, J.B., and Chisholm, S.W. 2002. Resolution of Prochlorococcus and Synechococcus ecotypes by using 16S-23S ribosomal DNA internal transcribed spacer sequences. Appl. Environ. Microbiol. 68: 1180-1191. (Pubitemid 34205356)
    • (2002) Applied and Environmental Microbiology , vol.68 , Issue.3 , pp. 1180-1191
    • Rocap, G.1    Distel, D.L.2    Waterbury, J.B.3    Chisholm, S.W.4
  • 83
    • 35848933932 scopus 로고    scopus 로고
    • The last word: Books as a statistical metaphor for microbial communities
    • Schloss, P.D. and Handelsman, J. 2007. The last word: Books as a statistical metaphor for microbial communities. Annu. Rev. Microbiol. 61: 23-34.
    • (2007) Annu. Rev. Microbiol. , vol.61 , pp. 23-34
    • Schloss, P.D.1    Handelsman, J.2
  • 84
    • 48349103531 scopus 로고    scopus 로고
    • Population genomic analysis of strain variation in Leptospirillum group II bacteria involved in acid mine drainage formation
    • doi: 10.1371/journal.pbio.0060177.
    • Simmons, S.L., Dibartolo, G., Denef, V.J., Goltsman, D.S., Thelen, M.P., and Banfield, J.F. 2008. Population genomic analysis of strain variation in Leptospirillum group II bacteria involved in acid mine drainage formation. PLoS Biol. 6: e177. doi: 10.1371/journal.pbio.0060177.
    • (2008) PLoS Biol. , vol.6
    • Simmons, S.L.1    Dibartolo, G.2    Denef, V.J.3    Goltsman, D.S.4    Thelen, M.P.5    Banfield, J.F.6
  • 88
    • 0034798494 scopus 로고    scopus 로고
    • The relative contributions of recombination and point mutation to the diversification of bacterial clones
    • DOI 10.1016/S1369-5274(00)00257-5
    • Spratt, B.G., Hanage, W.P., and Feil, E.J. 2001. The relative contributions of recombination and point mutation to the diversification of bacterial clones. Curr. Opin. Microbiol. 4: 602-606. (Pubitemid 32964111)
    • (2001) Current Opinion in Microbiology , vol.4 , Issue.5 , pp. 602-606
    • Spratt, B.G.1    Hanage, W.P.2    Feil, E.J.3
  • 89
    • 33947302827 scopus 로고    scopus 로고
    • Taxonomic parameters revisited: Tarnished gold standards
    • Stackebrandt, E. and Ebers, J. 2006. Taxonomic parameters revisited: Tarnished gold standards. Microbiol. Today 33: 152-155.
    • (2006) Microbiol. Today , vol.33 , pp. 152-155
    • Stackebrandt, E.1    Ebers, J.2
  • 91
    • 33751258603 scopus 로고    scopus 로고
    • The bacterial species dilemma and the genomic-phylogenetic species concept
    • Staley, J.T. 2006. The bacterial species dilemma and the genomic-phylogenetic species concept. Philos. Trans. R. Soc. Lond. B Biol. Sci. 361: 1899-1909.
    • (2006) Philos. Trans. R. Soc. Lond. B Biol. Sci. , vol.361 , pp. 1899-1909
    • Staley, J.T.1
  • 92
    • 0021779934 scopus 로고
    • Measurement of in situ activities of nonphotosynthetic microorganisms in aquatic and terrestrial habitats
    • Staley, J.T. and Konopka, A. 1985. Measurement of in situ activities of nonphotosynthetic microorganisms in aquatic and terrestrial habitats. Annu. Rev. Microbiol. 39: 321-346.
    • (1985) Annu. Rev. Microbiol. , vol.39 , pp. 321-346
    • Staley, J.T.1    Konopka, A.2
  • 93
    • 34249048365 scopus 로고    scopus 로고
    • Helicobacter pylori evolution and phenotypic diversification in a changing host
    • DOI 10.1038/nrmicro1658, PII NRMICRO1658
    • Suerbaum, S. and Josenhans, C. 2007. Helicobacter pylori evolution and phenotypic diversification in a changing host. Nat. Rev. Microbiol. 5: 441-452. (Pubitemid 46780081)
    • (2007) Nature Reviews Microbiology , vol.5 , Issue.6 , pp. 441-452
    • Suerbaum, S.1    Josenhans, C.2
  • 96
    • 0038192446 scopus 로고    scopus 로고
    • Horizontal acquisition of divergent chromosomal DNA in bacteria: Effects of mutator phenotypes
    • Townsend, J.P., Nielsen, K.M., Fisher, D.S., and Hartl, D.L. 2003. Horizontal acquisition of divergent chromosomal DNA in bacteria: Effects of mutator phenotypes. Genetics 164: 13-21.
    • (2003) Genetics , vol.164 , pp. 13-21
    • Townsend, J.P.1    Nielsen, K.M.2    Fisher, D.S.3    Hartl, D.L.4
  • 97
    • 33846033611 scopus 로고    scopus 로고
    • The secret life of the multilocus sequence type
    • Turner, K.M. and Feil, E.J. 2007. The secret life of the multilocus sequence type. Int. J. Antimicrob. Agents 29: 129-135.
    • (2007) Int. J. Antimicrob. Agents , vol.29 , pp. 129-135
    • Turner, K.M.1    Feil, E.J.2
  • 98
    • 42949142583 scopus 로고    scopus 로고
    • The emergence and fate of horizontally acquired genes in Escherichia coli
    • doi: 10.1371/journal.pcbi.1000059.
    • van Passel, M.W., Marri, P.R., and Ochman, H. 2008. The emergence and fate of horizontally acquired genes in Escherichia coli. PLoS Comput. Biol. 4: e1000059. doi: 10.1371/journal.pcbi.1000059.
    • (2008) PLoS Comput. Biol. , vol.4
    • Van Passel, M.W.1    Marri, P.R.2    Ochman, H.3
  • 99
    • 25144491745 scopus 로고    scopus 로고
    • How genomics has affected the concept of microbiology
    • DOI 10.1016/j.mib.2005.08.011, PII S136952740500127X, Antimicrobials / Genomics
    • Ward, N. and Fraser, C.M. 2005. How genomics has affected the concept of microbiology. Curr. Opin. Microbiol. 8: 564-571. (Pubitemid 41355037)
    • (2005) Current Opinion in Microbiology , vol.8 , Issue.5 , pp. 564-571
    • Ward, N.1    Fraser, C.M.2
  • 100
    • 33751210106 scopus 로고    scopus 로고
    • Cyanobacterial ecotypes in the microbial mat community of Mushroom Spring (Yellowstone National Park, Wyoming) as species-like units linking microbial community composition, structure and function
    • Ward, D.M., Bateson, M.M., Ferris, M.J., Kuhl, M., Wieland, A., Koeppel, A., and Cohan, F.M. 2006. Cyanobacterial ecotypes in the microbial mat community of Mushroom Spring (Yellowstone National Park, Wyoming) as species-like units linking microbial community composition, structure and function. Philos. Trans. R. Soc. Lond. B Biol. Sci. 361: 1997-2008.
    • (2006) Philos. Trans. R. Soc. Lond. B Biol. Sci. , vol.361 , pp. 1997-2008
    • Ward, D.M.1    Bateson, M.M.2    Ferris, M.J.3    Kuhl, M.4    Wieland, A.5    Koeppel, A.6    Cohan, F.M.7
  • 101
  • 103
    • 0042242559 scopus 로고    scopus 로고
    • Geographic barriers isolate endemic populations of hyperthermophilic archaea
    • Whitaker, R.J., Grogan, D.W., and Taylor, J.W. 2003. Geographic barriers isolate endemic populations of hyperthermophilic archaea. Science 301: 976-978.
    • (2003) Science , vol.301 , pp. 976-978
    • Whitaker, R.J.1    Grogan, D.W.2    Taylor, J.W.3
  • 106
    • 52949102049 scopus 로고    scopus 로고
    • A microdiversity study of anammox bacteria reveals a novel Candidatus Scalindua phylotype in marine oxygen minimum zones
    • Woebken, D., Lam, P., Kuypers, M.M., Naqvi, S.W., Kartal, B., Strous, M., Jetten, M.S., Fuchs, B.M., and Amann, R. 2008. A microdiversity study of anammox bacteria reveals a novel Candidatus Scalindua phylotype in marine oxygen minimum zones. Environ. Microbiol. 10: 3106-3119.
    • (2008) Environ. Microbiol. , vol.10 , pp. 3106-3119
    • Woebken, D.1    Lam, P.2    Kuypers, M.M.3    Naqvi, S.W.4    Kartal, B.5    Strous, M.6    Jetten, M.S.7    Fuchs, B.M.8    Amann, R.9
  • 107
    • 9144255640 scopus 로고    scopus 로고
    • An improved probability mapping approach to assess genome mosaicism
    • doi: 10.1186/1471-2164-4-37.
    • Zhaxybayeva, O. and Gogarten, J.P. 2003. An improved probability mapping approach to assess genome mosaicism. BMC Genomics 4: 37. doi: 10.1186/1471-2164-4-37.
    • (2003) BMC Genomics , vol.4 , pp. 37
    • Zhaxybayeva, O.1    Gogarten, J.P.2
  • 108
    • 1642339676 scopus 로고    scopus 로고
    • Cladogenesis, coalescence and the evolution of the three domains of life
    • Zhaxybayeva, O. and Gogarten, J.P. 2004. Cladogenesis, coalescence and the evolution of the three domains of life. Trends Genet. 20: 182-187.
    • (2004) Trends Genet. , vol.20 , pp. 182-187
    • Zhaxybayeva, O.1    Gogarten, J.P.2
  • 109
    • 33748277982 scopus 로고    scopus 로고
    • Phylogenetic analyses of cyanobacterial genomes: Quantification of horizontal gene transfer events
    • Zhaxybayeva, O., Gogarten, J.P., Charlebois, R.L., Doolittle, W.F., and Papke, R.T. 2006. Phylogenetic analyses of cyanobacterial genomes: Quantification of horizontal gene transfer events. Genome Res. 16: 1099-1108.
    • (2006) Genome Res. , vol.16 , pp. 1099-1108
    • Zhaxybayeva, O.1    Gogarten, J.P.2    Charlebois, R.L.3    Doolittle, W.F.4    Papke, R.T.5
  • 110
    • 34447499138 scopus 로고    scopus 로고
    • Systematic overestimation of gene gain through false diagnosis of gene absence
    • Zhaxybayeva, O., Nesbø, C.L., and Doolittle, W.F. 2007. Systematic overestimation of gene gain through false diagnosis of gene absence. Genome Biol. 8: 402.
    • (2007) Genome Biol. , vol.8 , pp. 402
    • Zhaxybayeva, O.1    Nesbø, C.L.2    Doolittle, W.F.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.