메뉴 건너뛰기




Volumn 64, Issue PART 2, 2014, Pages 384-391

A polyphasic strategy incorporating genomic data for the taxonomic description of novel bacterial species

Author keywords

[No Author keywords available]

Indexed keywords

RNA 16S;

EID: 84893456850     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.057091-0     Document Type: Review
Times cited : (323)

References (85)
  • 1
    • 1942443733 scopus 로고    scopus 로고
    • Divergence and redundancy of 16S rRNA sequences in genomes with multiple rrn operons
    • Acinas, S. G., Marcelino, L. A., Klepac-Ceraj, V. & Polz, M. F. (2004). Divergence and redundancy of 16S rRNA sequences in genomes with multiple rrn operons. J Bacteriol 186, 2629-2635.
    • (2004) J Bacteriol , vol.186 , pp. 2629-2635
    • Acinas, S.G.1    Marcelino, L.A.2    Klepac-Ceraj, V.3    Polz, M.F.4
  • 2
    • 77952891045 scopus 로고    scopus 로고
    • Standard operating procedure for calculating genome-to-genome distances based on high-scoring segment pairs
    • Auch, A. F., Klenk, H. P. & Göker, M. (2010). Standard operating procedure for calculating genome-to-genome distances based on high-scoring segment pairs. Stand Genomic Sci 2, 142-148.
    • (2010) Stand Genomic Sci , vol.2 , pp. 142-148
    • Auch, A.F.1    Klenk, H.P.2    Göker, M.3
  • 3
    • 0014663458 scopus 로고
    • Batch procedure for thermal elution of DNA from hydroxyapatite
    • Brenner, D. J., Fanning, G. R., Rake, A. V. & Johnson, K. E. (1969). Batch procedure for thermal elution of DNA from hydroxyapatite. Anal Biochem 28, 447-459.
    • (1969) Anal Biochem , vol.28 , pp. 447-459
    • Brenner, D.J.1    Fanning, G.R.2    Rake, A.V.3    Johnson, K.E.4
  • 4
    • 0011215011 scopus 로고    scopus 로고
    • Classification of procaryotic organisms and the concept of bacterial speciation
    • In, 2nd edn, Edited by D. R. Boone, R. W. Castenholz & G. M. Garrity. New York: Springer
    • Brenner, D. J., Staley, J. T. & Krieg, N. R. (2001). Classification of procaryotic organisms and the concept of bacterial speciation. In Bergey's Manual of Systematic Bacteriology, 2nd edn, vol. 1, pp. 27-31. Edited by D. R. Boone, R. W. Castenholz & G. M. Garrity. New York: Springer.
    • (2001) Bergey's Manual of Systematic Bacteriology , vol.1 , pp. 27-31
    • Brenner, D.J.1    Staley, J.T.2    Krieg, N.R.3
  • 6
    • 0346882654 scopus 로고    scopus 로고
    • Extracting phylogenetic information from whole-genome sequencing projects: The lactic acid bacteria as a test case
    • Coenye, T. & Vandamme, P. (2003). Extracting phylogenetic information from whole-genome sequencing projects: the lactic acid bacteria as a test case. Microbiology 149, 3507-3517.
    • (2003) Microbiology , vol.149 , pp. 3507-3517
    • Coenye, T.1    Vandamme, P.2
  • 7
    • 1542348484 scopus 로고    scopus 로고
    • Use of the genomic signature in bacterial classification and identification
    • Coenye, T. & Vandamme, P. (2004). Use of the genomic signature in bacterial classification and identification. Syst Appl Microbiol 27, 175-185.
    • (2004) Syst Appl Microbiol , vol.27 , pp. 175-185
    • Coenye, T.1    Vandamme, P.2
  • 8
    • 58149527706 scopus 로고    scopus 로고
    • A genomic distance based on MUM indicates discontinuity between most bacterial species and genera
    • Deloger, M., El Karoui, M. & Petit, M. A. (2009). A genomic distance based on MUM indicates discontinuity between most bacterial species and genera. J Bacteriol 191, 91-99.
    • (2009) J Bacteriol , vol.191 , pp. 91-99
    • Deloger, M.1    El Karoui, M.2    Petit, M.A.3
  • 9
    • 0033231209 scopus 로고    scopus 로고
    • Whole genome-based phylogenetic analysis of free-living microorganisms
    • Fitz Gibbon, S. T. & House, C. H. (1999). Whole genome-based phylogenetic analysis of free-living microorganisms. Nucleic Acids Res 27, 4218-4222.
    • (1999) Nucleic Acids Res , vol.27 , pp. 4218-4222
    • Fitz Gibbon, S.T.1    House, C.H.2
  • 11
    • 67649726849 scopus 로고    scopus 로고
    • Current knowledge on phylogeny and taxonomy of Rickettsia spp
    • Fournier, P. E. & Raoult, D. (2009). Current knowledge on phylogeny and taxonomy of Rickettsia spp. Ann N Y Acad Sci 1166, 1-11.
    • (2009) Ann N Y Acad Sci , vol.1166 , pp. 1-11
    • Fournier, P.E.1    Raoult, D.2
  • 12
    • 0026585263 scopus 로고
    • How close is close: 16S rRNA sequence identity may not be sufficient to guarantee species identity
    • Fox, G. E., Wisotzkey, J. D. & Jurtshuk, P., Jr (1992). How close is close: 16S rRNA sequence identity may not be sufficient to guarantee species identity. Int J Syst Bacteriol 42, 166-170.
    • (1992) Int J Syst Bacteriol , vol.42 , pp. 166-170
    • Fox, G.E.1    Wisotzkey, J.D.2    Jurtshuk Jr., P.3
  • 15
    • 0002771212 scopus 로고    scopus 로고
    • Towards a practical species concept for cultivable bacteria
    • In, Edited by M. F. Clarridge & H. A. Dawah. London: Chapman and Hall
    • Goodfellow, M., Manfio, G. P. & Chun, J. (1997). Towards a practical species concept for cultivable bacteria. In Species: The Units of Biodiversity, pp. 25-29. Edited by M. F. Clarridge & H. A. Dawah. London: Chapman and Hall.
    • (1997) Species: The Units of Biodiversity , pp. 25-29
    • Goodfellow, M.1    Manfio, G.P.2    Chun, J.3
  • 17
    • 0035756272 scopus 로고    scopus 로고
    • The branching order and phylogenetic placement of species from completed bacterial genomes, based on conserved indels found in various proteins
    • Gupta, R. S. (2001). The branching order and phylogenetic placement of species from completed bacterial genomes, based on conserved indels found in various proteins. Int Microbiol 4, 187-202.
    • (2001) Int Microbiol , vol.4 , pp. 187-202
    • Gupta, R.S.1
  • 18
    • 0035150977 scopus 로고    scopus 로고
    • Genomic approaches to typing, taxonomy and evolution of bacterial isolates
    • Gürtler, V. & Mayall, B. C. (2001). Genomic approaches to typing, taxonomy and evolution of bacterial isolates. Int J Syst Evol Microbiol 51, 3-16.
    • (2001) Int J Syst Evol Microbiol , vol.51 , pp. 3-16
    • Gürtler, V.1    Mayall, B.C.2
  • 22
    • 84881031463 scopus 로고    scopus 로고
    • Non-contiguous finished genome sequence and description of Kallipyga massiliensis gen. nov., sp. nov., a new member of the family Clostridiales Incertae Sedis XI
    • Hugon, P., Ramasamy, D., Robert, C., Couderc, C., Raoult, D. & Fournier, P. E. (2013c). Non-contiguous finished genome sequence and description of Kallipyga massiliensis gen. nov., sp. nov., a new member of the family Clostridiales Incertae Sedis XI. Stand Genomic Sci 8, 500-515.
    • (2013) Stand Genomic Sci , vol.8 , pp. 500-515
    • Hugon, P.1    Ramasamy, D.2    Robert, C.3    Couderc, C.4    Raoult, D.5    Fournier, P.E.6
  • 23
    • 84883808410 scopus 로고    scopus 로고
    • Brevibacillus massiliensis sp. nov. In List of new names and new combinations previously effectively, but not validly, published, Validation List no. 153
    • Hugon, P., Mishra, A. K., Lagier, J. C., Nguyen, T. T., Couderc, C., Raoult, D. & Fournier, P. E. (2013d). Brevibacillus massiliensis sp. nov. In List of new names and new combinations previously effectively, but not validly, published, Validation List no. 153. Int J Syst Evol Microbiol 63, 3131-3134.
    • (2013) Int J Syst Evol Microbiol , vol.63 , pp. 3131-3134
    • Hugon, P.1    Mishra, A.K.2    Lagier, J.C.3    Nguyen, T.T.4    Couderc, C.5    Raoult, D.6    Fournier, P.E.7
  • 24
    • 4544229161 scopus 로고    scopus 로고
    • Phylogenetic trees based on gene content
    • Huson, D. H. & Steel, M. (2004). Phylogenetic trees based on gene content. Bioinformatics 20, 2044-2049.
    • (2004) Bioinformatics , vol.20 , pp. 2044-2049
    • Huson, D.H.1    Steel, M.2
  • 25
    • 0033616714 scopus 로고    scopus 로고
    • Horizontal gene transfer among genomes: The complexity hypothesis
    • Jain, R., Rivera, M. C. & Lake, J. A. (1999). Horizontal gene transfer among genomes: the complexity hypothesis. Proc Natl Acad Sci U S A 96, 3801-3806.
    • (1999) Proc Natl Acad Sci U S A , vol.96 , pp. 3801-3806
    • Jain, R.1    Rivera, M.C.2    Lake, J.A.3
  • 27
    • 0006583276 scopus 로고
    • DNA reassociation experiments
    • In, Edited by E. Stackebrandt & M. Goodfellow. Chichester: Wiley
    • Johnson, J. L. (1991). DNA reassociation experiments. In Nucleic Acid Techniques in Bacterial Systematics, pp. 21-44. Edited by E. Stackebrandt & M. Goodfellow. Chichester: Wiley.
    • (1991) Nucleic Acid Techniques in Bacterial Systematics , pp. 21-44
    • Johnson, J.L.1
  • 28
    • 84855495004 scopus 로고    scopus 로고
    • Gene fragmentation in bacterial draft genomes: Extent, consequences and mitigation
    • Klassen, J. L. & Currie, C. R. (2012). Gene fragmentation in bacterial draft genomes: extent, consequences and mitigation. BMC Genomics 13, 14.
    • (2012) BMC Genomics , vol.13 , pp. 14
    • Klassen, J.L.1    Currie, C.R.2
  • 29
    • 77952889628 scopus 로고    scopus 로고
    • En route to a genome-based classification of Archaea and Bacteria?
    • Klenk, H. P. & Göker, M. (2010). En route to a genome-based classification of Archaea and Bacteria? Syst Appl Microbiol 33, 175-182.
    • (2010) Syst Appl Microbiol , vol.33 , pp. 175-182
    • Klenk, H.P.1    Göker, M.2
  • 31
    • 84872051727 scopus 로고    scopus 로고
    • Non-contiguous finished genome sequence and description of Brevibacterium senegalense sp. nov
    • Kokcha, S., Ramasamy, D., Lagier, J. C., Robert, C., Raoult, D. & Fournier, P. E. (2012b). Non-contiguous finished genome sequence and description of Brevibacterium senegalense sp. nov. Stand Genomic Sci 7, 233-245.
    • (2012) Stand Genomic Sci , vol.7 , pp. 233-245
    • Kokcha, S.1    Ramasamy, D.2    Lagier, J.C.3    Robert, C.4    Raoult, D.5    Fournier, P.E.6
  • 32
    • 84883808410 scopus 로고    scopus 로고
    • Brevibacterium senegalense sp. nov. In List of new names and new combinations previously effectively, but not validly, published, Validation List no. 153
    • Kokcha, S., Ramasamy, D., Lagier, J. C., Robert, C., Raoult, D. & Fournier, P. E. (2013). Brevibacterium senegalense sp. nov. In List of new names and new combinations previously effectively, but not validly, published, Validation List no. 153. Int J Syst Evol Microbiol 63, 3131-3134.
    • (2013) Int J Syst Evol Microbiol , vol.63 , pp. 3131-3134
    • Kokcha, S.1    Ramasamy, D.2    Lagier, J.C.3    Robert, C.4    Raoult, D.5    Fournier, P.E.6
  • 33
    • 14044262978 scopus 로고    scopus 로고
    • Genomic insights that advance the species definition for prokaryotes
    • Konstantinidis, K. T. & Tiedje, J. M. (2005). Genomic insights that advance the species definition for prokaryotes. Proc Natl Acad Sci U S A 102, 2567-2572.
    • (2005) Proc Natl Acad Sci U S A , vol.102 , pp. 2567-2572
    • Konstantinidis, K.T.1    Tiedje, J.M.2
  • 34
    • 35748954014 scopus 로고    scopus 로고
    • Prokaryotic taxonomy and phylogeny in the genomic era: Advancements and challenges ahead
    • Konstantinidis, K. T. & Tiedje, J. M. (2007). Prokaryotic taxonomy and phylogeny in the genomic era: advancements and challenges ahead. Curr Opin Microbiol 10, 504-509.
    • (2007) Curr Opin Microbiol , vol.10 , pp. 504-509
    • Konstantinidis, K.T.1    Tiedje, J.M.2
  • 38
    • 84872023569 scopus 로고    scopus 로고
    • Non-contiguous finished genome sequence and description of Herbaspirillum massiliense sp. nov
    • Lagier, J. C., Gimenez, G., Robert, C., Raoult, D. & Fournier, P. E. (2012d). Non-contiguous finished genome sequence and description of Herbaspirillum massiliense sp. nov. Stand Genomic Sci 7, 200-209.
    • (2012) Stand Genomic Sci , vol.7 , pp. 200-209
    • Lagier, J.C.1    Gimenez, G.2    Robert, C.3    Raoult, D.4    Fournier, P.E.5
  • 39
    • 84872032925 scopus 로고    scopus 로고
    • Non contiguous-finished genome sequence and description of Cellulomonas massiliensis sp. nov
    • Lagier, J. C., Ramasamy, D., Rivet, R., Raoult, D. & Fournier, P. E. (2012e). Non contiguous-finished genome sequence and description of Cellulomonas massiliensis sp. nov. Stand Genomic Sci 7, 258-270.
    • (2012) Stand Genomic Sci , vol.7 , pp. 258-270
    • Lagier, J.C.1    Ramasamy, D.2    Rivet, R.3    Raoult, D.4    Fournier, P.E.5
  • 40
    • 84875385231 scopus 로고    scopus 로고
    • Non contiguous-finished genome sequence and description of Senegalemassilia anaerobia gen. nov., sp. nov
    • Lagier, J. C., Elkarkouri, K., Rivet, R., Couderc, C., Raoult, D. & Fournier, P. E. (2013a). Non contiguous-finished genome sequence and description of Senegalemassilia anaerobia gen. nov., sp. nov. Stand Genomic Sci 7, 343-356.
    • (2013) Stand Genomic Sci , vol.7 , pp. 343-356
    • Lagier, J.C.1    Elkarkouri, K.2    Rivet, R.3    Couderc, C.4    Raoult, D.5    Fournier, P.E.6
  • 41
    • 84875391337 scopus 로고    scopus 로고
    • Non contiguous-finished genome sequence and description of Enterobacter massiliensis sp. nov
    • Lagier, J. C., El Karkouri, K., Mishra, A. K., Robert, C., Raoult, D. & Fournier, P. E. (2013b). Non contiguous-finished genome sequence and description of Enterobacter massiliensis sp. nov. Stand Genomic Sci 7, 399-412.
    • (2013) Stand Genomic Sci , vol.7 , pp. 399-412
    • Lagier, J.C.1    El Karkouri, K.2    Mishra, A.K.3    Robert, C.4    Raoult, D.5    Fournier, P.E.6
  • 43
    • 84874041126 scopus 로고    scopus 로고
    • Dehalococcoides mccartyi gen. nov., sp. nov., obligately organohalide-respiring anaerobic bacteria relevant to halogen cycling and bioremediation, belong to a novel bacterial class, Dehalococcoidia classis nov., order Dehalococcoidales ord. nov. and family Dehalococcoidaceae fam. nov., within the phylum Chloroflexi
    • Loffler, F. E., Yan, J., Ritalahti, K. M., Adrian, L., Edwards, E. A., Konstantinidis, K. T., Muller, J. A., Fullerton, H., Zinder, S. H. & Spormann, A. M. (2012). Dehalococcoides mccartyi gen. nov., sp. nov., obligately organohalide-respiring anaerobic bacteria relevant to halogen cycling and bioremediation, belong to a novel bacterial class, Dehalococcoidia classis nov., order Dehalococcoidales ord. nov. and family Dehalococcoidaceae fam. nov., within the phylum Chloroflexi. Int J Syst Evol Microbiol 63, 625-635.
    • (2012) Int J Syst Evol Microbiol , vol.63 , pp. 625-635
    • Loffler, F.E.1    Yan, J.2    Ritalahti, K.M.3    Adrian, L.4    Edwards, E.A.5    Konstantinidis, K.T.6    Muller, J.A.7    Fullerton, H.8    Zinder, S.H.9    Spormann, A.M.10
  • 45
    • 0016684892 scopus 로고
    • Differentiation of Mycobacterium, Nocardia, and related taxa by thin-layer chromatographic analysis of whole-organism methanolysates
    • Minnikin, D. E., Alshamaony, L. & Goodfellow, M. (1975). Differentiation of Mycobacterium, Nocardia, and related taxa by thin-layer chromatographic analysis of whole-organism methanolysates. J Gen Microbiol 88, 200-204.
    • (1975) J Gen Microbiol , vol.88 , pp. 200-204
    • Minnikin, D.E.1    Alshamaony, L.2    Goodfellow, M.3
  • 46
    • 84865269119 scopus 로고    scopus 로고
    • Non-contiguous finished genome sequence and description of Alistipes senegalensis sp. nov
    • Mishra, A. K., Gimenez, G., Lagier, J. C., Robert, C., Raoult, D. & Fournier, P. E. (2012a). Non-contiguous finished genome sequence and description of Alistipes senegalensis sp. nov. Stand Genomic Sci 6, 304-314.
    • (2012) Stand Genomic Sci , vol.6 , pp. 304-314
    • Mishra, A.K.1    Gimenez, G.2    Lagier, J.C.3    Robert, C.4    Raoult, D.5    Fournier, P.E.6
  • 47
    • 84865245364 scopus 로고    scopus 로고
    • Non-contiguous finished genome sequence and description of Clostridium senegalense sp. nov
    • Mishra, A. K., Lagier, J. C., Robert, C., Raoult, D. & Fournier, P. E. (2012b). Non-contiguous finished genome sequence and description of Clostridium senegalense sp. nov. Stand Genomic Sci 6, 386-395.
    • (2012) Stand Genomic Sci , vol.6 , pp. 386-395
    • Mishra, A.K.1    Lagier, J.C.2    Robert, C.3    Raoult, D.4    Fournier, P.E.5
  • 48
    • 84868285716 scopus 로고    scopus 로고
    • Non contiguous-finished genome sequence and description of Peptoniphilus timonensis sp. nov
    • Mishra, A. K., Lagier, J. C., Robert, C., Raoult, D. & Fournier, P. E. (2012c). Non contiguous-finished genome sequence and description of Peptoniphilus timonensis sp. nov. Stand Genomic Sci 7, 1-11.
    • (2012) Stand Genomic Sci , vol.7 , pp. 1-11
    • Mishra, A.K.1    Lagier, J.C.2    Robert, C.3    Raoult, D.4    Fournier, P.E.5
  • 49
    • 84868284273 scopus 로고    scopus 로고
    • Non-contiguous finished genome sequence and description of Paenibacillus senegalensis sp. nov
    • Mishra, A. K., Lagier, J. C., Rivet, R., Raoult, D. & Fournier, P. E. (2012d). Non-contiguous finished genome sequence and description of Paenibacillus senegalensis sp. nov. Stand Genomic Sci 7, 70-81.
    • (2012) Stand Genomic Sci , vol.7 , pp. 70-81
    • Mishra, A.K.1    Lagier, J.C.2    Rivet, R.3    Raoult, D.4    Fournier, P.E.5
  • 50
    • 84877844778 scopus 로고    scopus 로고
    • Non contiguous-finished genome sequence and description of Peptoniphilus grossensis sp. nov
    • Mishra, A. K., Hugon, P., Robert, C., Raoult, D. & Fournier, P. E. (2012e). Non contiguous-finished genome sequence and description of Peptoniphilus grossensis sp. nov. Stand Genomic Sci 7, 320-330.
    • (2012) Stand Genomic Sci , vol.7 , pp. 320-330
    • Mishra, A.K.1    Hugon, P.2    Robert, C.3    Raoult, D.4    Fournier, P.E.5
  • 52
    • 84875405573 scopus 로고    scopus 로고
    • Non contiguous-finished genome sequence and description of Peptoniphilus senegalensis sp. nov
    • Mishra, A. K., Lagier, J. C., Nguyen, T. T., Raoult, D. & Fournier, P. E. (2013b). Non contiguous-finished genome sequence and description of Peptoniphilus senegalensis sp. nov. Stand Genomic Sci 7, 370-381.
    • (2013) Stand Genomic Sci , vol.7 , pp. 370-381
    • Mishra, A.K.1    Lagier, J.C.2    Nguyen, T.T.3    Raoult, D.4    Fournier, P.E.5
  • 53
    • 84879370612 scopus 로고    scopus 로고
    • Non contiguous-finished genome sequence and description of Enorma massiliensis gen. nov., sp. nov., a new member of the family Coriobacteriaceae
    • Mishra, A. K., Hugon, P., Lagier, J. C., Nguyen, T. T., Couderc, C., Raoult, D. & Fournier, P. E. (2013c). Non contiguous-finished genome sequence and description of Enorma massiliensis gen. nov., sp. nov., a new member of the family Coriobacteriaceae. Stand Genomic Sci 8, 290-305.
    • (2013) Stand Genomic Sci , vol.8 , pp. 290-305
    • Mishra, A.K.1    Hugon, P.2    Lagier, J.C.3    Nguyen, T.T.4    Couderc, C.5    Raoult, D.6    Fournier, P.E.7
  • 54
    • 84879342227 scopus 로고    scopus 로고
    • Genome sequence and description of Timonella senegalensis gen. nov., sp. nov., a new member of the suborder Micrococcinae
    • Mishra, A. K., Lagier, J. C., Robert, C., Raoult, D. & Fournier, P. E. (2013d). Genome sequence and description of Timonella senegalensis gen. nov., sp. nov., a new member of the suborder Micrococcinae. Stand Genomic Sci 8, 318-335.
    • (2013) Stand Genomic Sci , vol.8 , pp. 318-335
    • Mishra, A.K.1    Lagier, J.C.2    Robert, C.3    Raoult, D.4    Fournier, P.E.5
  • 55
    • 84881042465 scopus 로고    scopus 로고
    • Non contiguous-finished genome sequence and description of Bacillus massilioanorexicus sp. nov
    • Mishra, A. K., Pfleiderer, A., Lagier, J. C., Robert, C., Raoult, D. & Fournier, P. E. (2013d). Non contiguous-finished genome sequence and description of Bacillus massilioanorexicus sp. nov. Stand Genomic Sci 8, 465-479.
    • (2013) Stand Genomic Sci , vol.8 , pp. 465-479
    • Mishra, A.K.1    Pfleiderer, A.2    Lagier, J.C.3    Robert, C.4    Raoult, D.5    Fournier, P.E.6
  • 57
    • 0027505613 scopus 로고
    • Ribosomal RNA: A key to phylogeny
    • Olsen, G. J. & Woese, C. R. (1993). Ribosomal RNA: a key to phylogeny. FASEB J 7, 113-123.
    • (1993) FASEB J , vol.7 , pp. 113-123
    • Olsen, G.J.1    Woese, C.R.2
  • 58
    • 0013108111 scopus 로고
    • Die Hauptlinien des naturalischen Bakteriensystems nebst einer Ubersicht der Garungsphenomene
    • (in German)
    • Orla-Jensen, S. (1909). Die Hauptlinien des naturalischen Bakteriensystems nebst einer Ubersicht der Garungsphenomene. Zentralbl Bakteriol Parasitenkd Abt II 22, 305-346 (in German).
    • (1909) Zentralbl Bakteriol Parasitenkd Abt II , vol.22 , pp. 305-346
    • Orla-Jensen, S.1
  • 59
    • 84893506417 scopus 로고    scopus 로고
    • From genome sequence to taxonomy-a skeptic's view
    • In, 4th edn, Edited by E. Rosenberg, E. F. DeLong, E. Stackebrandt, S. Lory & S. D. Thompson. Berlin: Springer
    • Ozen, A. I., Vesth, T. & Ussery, D. W. (2012). From genome sequence to taxonomy-a skeptic's view. In The Prokaryotes, 4th edn, pp. 209-227. Edited by E. Rosenberg, E. F. DeLong, E. Stackebrandt, S. Lory & S. D. Thompson. Berlin: Springer.
    • (2012) The Prokaryotes , pp. 209-227
    • Ozen, A.I.1    Vesth, T.2    Ussery, D.W.3
  • 60
    • 77957948829 scopus 로고    scopus 로고
    • The Pseudomonas story
    • Palleroni, N. J. (2010). The Pseudomonas story. Environ Microbiol 12, 1377-1383.
    • (2010) Environ Microbiol , vol.12 , pp. 1377-1383
    • Palleroni, N.J.1
  • 63
    • 84879336231 scopus 로고    scopus 로고
    • Non contiguous-finished genome sequence and description of Bacillus massiliosenegalensis sp. nov
    • Ramasamy, D., Lagier, J.-C., Gorlas, A., Raoult, D. & Fournier, P.-E. (2013a). Non contiguous-finished genome sequence and description of Bacillus massiliosenegalensis sp. nov. Stand Genomic Sci 8, 264-278.
    • (2013) Stand Genomic Sci , vol.8 , pp. 264-278
    • Ramasamy, D.1    Lagier, J.-C.2    Gorlas, A.3    Raoult, D.4    Fournier, P.-E.5
  • 64
    • 84879374186 scopus 로고    scopus 로고
    • Non contiguous-finished genome sequence and description of Dielma fastidiosa gen. nov., sp. nov., a new member of the family Erysipelotrichaceae
    • Ramasamy, D., Lagier, J. C., Nguyen, T. T., Raoult, D. & Fournier, P. E. (2013b). Non contiguous-finished genome sequence and description of Dielma fastidiosa gen. nov., sp. nov., a new member of the family Erysipelotrichaceae. Stand Genomic Sci 8, 336-351.
    • (2013) Stand Genomic Sci , vol.8 , pp. 336-351
    • Ramasamy, D.1    Lagier, J.C.2    Nguyen, T.T.3    Raoult, D.4    Fournier, P.E.5
  • 65
    • 73149098333 scopus 로고    scopus 로고
    • Shifting the genomic gold standard for the prokaryotic species definition
    • Richter, M. & Rosselló-Móra, R. (2009). Shifting the genomic gold standard for the prokaryotic species definition. Proc Natl Acad Sci U S A 106, 19126-19131.
    • (2009) Proc Natl Acad Sci U S A , vol.106 , pp. 19126-19131
    • Richter, M.1    Rosselló-Móra, R.2
  • 66
    • 84865363124 scopus 로고    scopus 로고
    • The limitations of draft assemblies for understanding prokaryotic adaptation and evolution
    • Ricker, N., Qian, H. & Fulthorpe, R. R. (2012). The limitations of draft assemblies for understanding prokaryotic adaptation and evolution. Genomics 100, 167-175.
    • (2012) Genomics , vol.100 , pp. 167-175
    • Ricker, N.1    Qian, H.2    Fulthorpe, R.R.3
  • 68
    • 24944433946 scopus 로고    scopus 로고
    • Updating prokaryotic taxonomy
    • Rosselló-Mora, R. (2005). Updating prokaryotic taxonomy. J Bacteriol 187, 6255-6257.
    • (2005) J Bacteriol , vol.187 , pp. 6255-6257
    • Rosselló-Mora, R.1
  • 69
    • 84900241743 scopus 로고    scopus 로고
    • DNA-DNA reassociation methods applied to microbial taxonomy and their critical evaluation
    • In, Edited by E. Stackebrandt. Berlin: Springer
    • Rosselló-Mora, R. (2006). DNA-DNA reassociation methods applied to microbial taxonomy and their critical evaluation. In Molecular Identification, Systematics, and Population Structure of Prokaryotes, pp. 23-50. Edited by E. Stackebrandt. Berlin: Springer.
    • (2006) Molecular Identification, Systematics, and Population Structure of Prokaryotes , pp. 23-50
    • Rosselló-Mora, R.1
  • 71
    • 67651108596 scopus 로고    scopus 로고
    • Ongoing revolution in bacteriology: Routine identification of bacteria by matrix-assisted laser desorption ionization time-of-flight mass spectrometry
    • Seng, P., Drancourt, M., Gouriet, F., La Scola, B., Fournier, P. E., Rolain, J. M. & Raoult, D. (2009). Ongoing revolution in bacteriology: routine identification of bacteria by matrix-assisted laser desorption ionization time-of-flight mass spectrometry. Clin Infect Dis 49, 543-551.
    • (2009) Clin Infect Dis , vol.49 , pp. 543-551
    • Seng, P.1    Drancourt, M.2    Gouriet, F.3    La Scola, B.4    Fournier, P.E.5    Rolain, J.M.6    Raoult, D.7
  • 72
    • 0000612080 scopus 로고
    • Phenotypic characterization
    • In, Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology
    • Smibert, R. M. & Krieg, N. R. (1994). Phenotypic characterization. In Methods for General and Molecular Bacteriology, pp. 607-654. Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology.
    • (1994) Methods for General and Molecular Bacteriology , pp. 607-654
    • Smibert, R.M.1    Krieg, N.R.2
  • 74
    • 0032900532 scopus 로고    scopus 로고
    • Genome phylogeny based on gene content
    • Snel, B., Bork, P. & Huynen, M. A. (1999). Genome phylogeny based on gene content. Nat Genet 21, 108-110.
    • (1999) Nat Genet , vol.21 , pp. 108-110
    • Snel, B.1    Bork, P.2    Huynen, M.A.3
  • 75
    • 84873801934 scopus 로고    scopus 로고
    • High-throughput sequencing for biology and medicine
    • Soon, W. W., Hariharan, M. & Snyder, M. P. (2013). High-throughput sequencing for biology and medicine. Mol Syst Biol 9, 640.
    • (2013) Mol Syst Biol , vol.9 , pp. 640
    • Soon, W.W.1    Hariharan, M.2    Snyder, M.P.3
  • 76
    • 33947302827 scopus 로고    scopus 로고
    • Taxonomic parameters revisited: Tarnished gold standards
    • Stackebrandt, E. & Ebers, J. (2006). Taxonomic parameters revisited: tarnished gold standards. Microbiol Today 33, 152-155.
    • (2006) Microbiol Today , vol.33 , pp. 152-155
    • Stackebrandt, E.1    Ebers, J.2
  • 82
    • 79951682259 scopus 로고    scopus 로고
    • Applications of whole-cell matrixassisted laser-desorption/ionization time-of-flight mass spectrometry in systematic microbiology
    • Welker, M. & Moore, E. R. (2011). Applications of whole-cell matrixassisted laser-desorption/ionization time-of-flight mass spectrometry in systematic microbiology. Syst Appl Microbiol 34, 2-11.
    • (2011) Syst Appl Microbiol , vol.34 , pp. 2-11
    • Welker, M.1    Moore, E.R.2
  • 83
    • 0025300402 scopus 로고
    • Towards a natural system of organisms: Proposal for the domains Archaea, Bacteria, and Eucarya
    • Woese, C. R., Kandler, O. & Wheelis, M. L. (1990). Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya. Proc Natl Acad Sci U S A 87, 4576-4579.
    • (1990) Proc Natl Acad Sci U S A , vol.87 , pp. 4576-4579
    • Woese, C.R.1    Kandler, O.2    Wheelis, M.L.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.