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Volumn 172, Issue 2, 2006, Pages 759-769

Recombination in thermotoga: Implications for species concepts and biogeography

Author keywords

[No Author keywords available]

Indexed keywords

ALLELE; ARTICLE; BACTERIAL GENE; BIOGEOGRAPHY; CONTROLLED STUDY; ECOTYPE; GENE LOCATION; GENE SEQUENCE; GENETIC LINE; GENETIC RECOMBINATION; GENOME; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROKARYOTE; SPECIES COEXISTENCE; SPECIES COMPARISON; SPECIES DIFFERENCE; SPECIES DIVERSITY; THERMOPHILIC BACTERIUM; THERMOTOGA; UNINDEXED SEQUENCE;

EID: 33644749286     PISSN: 00166731     EISSN: 00166731     Source Type: Journal    
DOI: 10.1534/genetics.105.049312     Document Type: Article
Times cited : (72)

References (42)
  • 1
    • 0032700191 scopus 로고    scopus 로고
    • A highly conserved plasmid from the extreme thermophile Thermotoga maritima MC24 is a member of a family of plasmids distributed worldwide
    • AKIMKINA, T., P. IVANOV, S. KOSTROV, T. SOKOLOVA, E. BONCH-OSMOLOVSKAYA et al., 1999 A highly conserved plasmid from the extreme thermophile Thermotoga maritima MC24 is a member of a family of plasmids distributed worldwide. Plasmid 42: 236-240.
    • (1999) Plasmid , vol.42 , pp. 236-240
    • Akimkina, T.1    Ivanov, P.2    Kostrov, S.3    Sokolova, T.4    Bonch-Osmolovskaya, E.5
  • 3
    • 0001972030 scopus 로고
    • Protocol 12: Purification of plasmids from thermophilic and hyperthermophilic Archaea
    • edited by F. T. ROBB and A. R. PLACE. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
    • CHARBONNIER, F., and P. FORTERRE, 1995 Protocol 12: purification of plasmids from thermophilic and hyperthermophilic Archaea, pp. 87-90 in Archaea: A Laboratory Manual - Thermophiles, edited by F. T. ROBB and A. R. PLACE. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
    • (1995) Archaea: A Laboratory Manual - Thermophiles , pp. 87-90
    • Charbonnier, F.1    Forterre, P.2
  • 4
    • 0037470149 scopus 로고    scopus 로고
    • Carbohydrate-induced differential gene expression patterns in the hyperthermophilic bacterium Thermotoga maritima
    • CHHABRA, S. R., K. R. SHOCKLEY, S. B. CONNERS, K. L. SCOTT, R. D. WOLFINGER et al., 2003 Carbohydrate-induced differential gene expression patterns in the hyperthermophilic bacterium Thermotoga maritima. J. Biol. Chem. 278: 7540-7552.
    • (2003) J. Biol. Chem. , vol.278 , pp. 7540-7552
    • Chhabra, S.R.1    Shockley, K.R.2    Conners, S.B.3    Scott, K.L.4    Wolfinger, R.D.5
  • 5
    • 0036407157 scopus 로고    scopus 로고
    • What are bacterial species?
    • COHAN, F. M., 2002 What are bacterial species? Annu. Rev. Microbiol. 56: 457-487.
    • (2002) Annu. Rev. Microbiol. , vol.56 , pp. 457-487
    • Cohan, F.M.1
  • 7
    • 0025788069 scopus 로고
    • Recombination in Escherichia coli and the definition of biological species
    • DYKHUIZEN, D. E., and L. GREEN, 1991 Recombination in Escherichia coli and the definition of biological species. J. Bacteriol. 173: 7257-7268.
    • (1991) J. Bacteriol. , vol.173 , pp. 7257-7268
    • Dykhuizen, D.E.1    Green, L.2
  • 8
    • 2942555285 scopus 로고    scopus 로고
    • Analyses of clonality and the evolution of bacterial pathogens
    • FEIL, E. J., and M. C. ENRIGHT, 2004 Analyses of clonality and the evolution of bacterial pathogens. Curr. Opin. Microbiol. 7: 308-313.
    • (2004) Curr. Opin. Microbiol. , vol.7 , pp. 308-313
    • Feil, E.J.1    Enright, M.C.2
  • 9
    • 0034769889 scopus 로고    scopus 로고
    • Recombination and the population structures of bacterial pathogens
    • FEIL, E. J., and B. G. SPRATT, 2001 Recombination and the population structures of bacterial pathogens. Annu. Rev. Microbiol. 55: 561-590.
    • (2001) Annu. Rev. Microbiol. , vol.55 , pp. 561-590
    • Feil, E.J.1    Spratt, B.G.2
  • 10
    • 0033865030 scopus 로고    scopus 로고
    • Estimating the relative contributions of mutation and recombination to clonal diversification: A comparison between Neisseria meningitidis and Streptococcus pneumoniae
    • FEIL, E. J., M. C. ENRIGHT and B. G. SPRATT, 2000 Estimating the relative contributions of mutation and recombination to clonal diversification: a comparison between Neisseria meningitidis and Streptococcus pneumoniae. Res. Microbiol. 151: 465-469.
    • (2000) Res. Microbiol. , vol.151 , pp. 465-469
    • Feil, E.J.1    Enright, M.C.2    Spratt, B.G.3
  • 11
    • 0041317111 scopus 로고    scopus 로고
    • Microbiology. Biogeography for bacteria
    • FENCHEL, T., 2003 Microbiology. Biogeography for bacteria. Science 301: 925-926.
    • (2003) Science , vol.301 , pp. 925-926
    • Fenchel, T.1
  • 12
    • 1942528013 scopus 로고    scopus 로고
    • Cosmopolitan metapopulations of free-living microbial eukaryotes
    • FINLAY, B. J., and T. FENCHEL, 2004 Cosmopolitan metapopulations of free-living microbial eukaryotes. Protist 155: 237-244.
    • (2004) Protist , vol.155 , pp. 237-244
    • Finlay, B.J.1    Fenchel, T.2
  • 15
    • 22144486947 scopus 로고    scopus 로고
    • Fuzzy species among recombinogenic bacteria
    • HANAGE, W. P., C. FRASER and B. G. SPRATT, 2005 Fuzzy species among recombinogenic bacteria. BMC Biol. 3: 6.
    • (2005) BMC Biol. , vol.3 , pp. 6
    • Hanage, W.P.1    Fraser, C.2    Spratt, B.G.3
  • 16
    • 0028278946 scopus 로고
    • A cryptic miniplasmid from the hyperthermophilic bacterium Thermotoga sp. strain RQ7
    • HARRIOTT, O. T., R. HUBER, K. O. STETTER, P. W. BETTS and K. M. NOLL, 1994 A cryptic miniplasmid from the hyperthermophilic bacterium Thermotoga sp. strain RQ7. J. Bacteriol. 176: 2759-2762.
    • (1994) J. Bacteriol. , vol.176 , pp. 2759-2762
    • Harriott, O.T.1    Huber, R.2    Stetter, K.O.3    Betts, P.W.4    Noll, K.M.5
  • 18
    • 0022522022 scopus 로고
    • Thermotoga maritima sp. nov. represents a new genus of unique extremely thermophilic eubacteria growing up to 90°C
    • HUBER, R., T. A. LANGWORTHY, H. KÖNING, M. THOMM, C. R. WOESE et al., 1986 Thermotoga maritima sp. nov. represents a new genus of unique extremely thermophilic eubacteria growing up to 90°C. Arch. Microbiol. 144: 324-333.
    • (1986) Arch. Microbiol. , vol.144 , pp. 324-333
    • Huber, R.1    Langworthy, T.A.2    Köning, H.3    Thomm, M.4    Woese, C.R.5
  • 19
    • 0031678692 scopus 로고    scopus 로고
    • SplitsTree: Analyzing and visualizing evolutionary data
    • HUSON, D. H., 1998 SplitsTree: analyzing and visualizing evolutionary data. Bioinformatics 14: 68-73.
    • (1998) Bioinformatics , vol.14 , pp. 68-73
    • Huson, D.H.1
  • 20
    • 0001218383 scopus 로고
    • Thermotoga neapolitana sp. nov. of the extremely thermophilic, eubacterial genus Thermotoga
    • JANNASCH, H., R. HUBER, S. BELKIN and K. STETTER, 1988 Thermotoga neapolitana sp. nov. of the extremely thermophilic, eubacterial genus Thermotoga. Arch. Microbiol. 150: 103-104.
    • (1988) Arch. Microbiol. , vol.150 , pp. 103-104
    • Jannasch, H.1    Huber, R.2    Belkin, S.3    Stetter, K.4
  • 21
    • 14044262978 scopus 로고    scopus 로고
    • Genomic insights that advance the species definition for prokaryotes
    • USA
    • KONSTANTINIDIS, K. T., and J. M. TIEDJE, 2005 Genomic insights that advance the species definition for prokaryotes. Proc. Natl. Acad. Sci. USA 102: 2567-2572.
    • (2005) Proc. Natl. Acad. Sci. , vol.102 , pp. 2567-2572
    • Konstantinidis, K.T.1    Tiedje, J.M.2
  • 22
    • 0030854739 scopus 로고    scopus 로고
    • tRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence
    • LOWE, T. M., and S. R. EDDY, 1997 tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res. 25: 955-964.
    • (1997) Nucleic Acids Res. , vol.25 , pp. 955-964
    • Lowe, T.M.1    Eddy, S.R.2
  • 23
    • 13444251528 scopus 로고    scopus 로고
    • RDP2: Recombination detection and analysis from sequence alignments
    • MARTIN, D. P., C. WILLIAMSON and D. POSADA, 2005 RDP2: recombination detection and analysis from sequence alignments. Bioinformatics 21: 260-262.
    • (2005) Bioinformatics , vol.21 , pp. 260-262
    • Martin, D.P.1    Williamson, C.2    Posada, D.3
  • 24
    • 21844466436 scopus 로고    scopus 로고
    • Gene transfer and genome plasticity in Thermotoga maritima, a model hyperthermophilic species
    • MONGODIN, E. F., I. R. HANCE, R. T. DEBOY, S. R. GILL, S. DAUGHERTY et al., 2005 Gene transfer and genome plasticity in Thermotoga maritima, a model hyperthermophilic species. J. Bacteriol. 187: 4935-4944.
    • (2005) J. Bacteriol. , vol.187 , pp. 4935-4944
    • Mongodin, E.F.1    Hance, I.R.2    Deboy, R.T.3    Gill, S.R.4    Daugherty, S.5
  • 25
    • 0033609333 scopus 로고    scopus 로고
    • Evidence for lateral gene transfer between Archaea and bacteria from genome sequence of Thermotoga maritima
    • NELSON, K. E., R. A. CLAYTON, S. R. GILL, M. L. GWINN, R. J. DODSON et al., 1999 Evidence for lateral gene transfer between Archaea and bacteria from genome sequence of Thermotoga maritima. Nature 399: 323-329.
    • (1999) Nature , vol.399 , pp. 323-329
    • Nelson, K.E.1    Clayton, R.A.2    Gill, S.R.3    Gwinn, M.L.4    Dodson, R.J.5
  • 26
    • 0141814674 scopus 로고    scopus 로고
    • Active self-splicing group I introns in the 23S rRNA genes of hyperthermophilic bacteria, derived from introns in eukaryotic organelles
    • USA
    • NESBØ, C. L., and W. F. DOOLITTLE, 2003a Active self-splicing group I introns in the 23S rRNA genes of hyperthermophilic bacteria, derived from introns in eukaryotic organelles. Proc. Natl. Acad. Sci. USA 100: 10806-10811.
    • (2003) Proc. Natl. Acad. Sci. , vol.100 , pp. 10806-10811
    • Nesbø, C.L.1    Doolittle, W.F.2
  • 27
    • 0242424342 scopus 로고    scopus 로고
    • Targeting clusters of transferred genes in Thermotoga maritima
    • NESBØ, C. L., and W. F. DOOLITTLE, 2003b Targeting clusters of transferred genes in Thermotoga maritima. Environ. Microbiol. 5: 1144-1154.
    • (2003) Environ. Microbiol. , vol.5 , pp. 1144-1154
    • Nesbø, C.L.1    Doolittle, W.F.2
  • 28
    • 0036335361 scopus 로고    scopus 로고
    • Suppressive subtractive hybridization detects extensive genomic diversity in Thermotoga maritima
    • NESBØ, C. L., K. E. NELSON and W. F. DOOLITTLE, 2002 Suppressive subtractive hybridization detects extensive genomic diversity in Thermotoga maritima. J. Bacteriol. 184: 4475-4488.
    • (2002) J. Bacteriol. , vol.184 , pp. 4475-4488
    • Nesbø, C.L.1    Nelson, K.E.2    Doolittle, W.F.3
  • 29
    • 3042735789 scopus 로고    scopus 로고
    • Whole-genome expression profiling of Thermotoga maritima in response to growth on sugars in a chemostat
    • NGUYEN, T. N., A. D. EJAZ, M. A. BRANCIERI, A. M. MIKULA, K. E. NELSON et al., 2004 Whole-genome expression profiling of Thermotoga maritima in response to growth on sugars in a chemostat. J. Bacteriol. 186: 4824-4828.
    • (2004) J. Bacteriol. , vol.186 , pp. 4824-4828
    • Nguyen, T.N.1    Ejaz, A.D.2    Brancieri, M.A.3    Mikula, A.M.4    Nelson, K.E.5
  • 30
    • 0033590220 scopus 로고    scopus 로고
    • Possible emergence of new geminiviruses by frequent recombination
    • PADIDAM, M., S. SAWYER and C. M. FAUQUET, 1999 Possible emergence of new geminiviruses by frequent recombination. Virology 265: 218-225.
    • (1999) Virology , vol.265 , pp. 218-225
    • Padidam, M.1    Sawyer, S.2    Fauquet, C.M.3
  • 31
    • 10344243528 scopus 로고    scopus 로고
    • Frequent recombination in a saltern population of Halorubrum
    • PAPKE, R. T., J. E. KOENIG, F. RODRIGUEZ-VALERA and W. F. DOOLITTLE, 2004 Frequent recombination in a saltern population of Halorubrum. Science 306: 1928-1929.
    • (2004) Science , vol.306 , pp. 1928-1929
    • Papke, R.T.1    Koenig, J.E.2    Rodriguez-Valera, F.3    Doolittle, W.F.4
  • 32
    • 0035923699 scopus 로고    scopus 로고
    • Evaluation of methods for detecting recombination from DNA sequences: Computer simulations
    • USA
    • POSADA, D., and K. A. CRANDALL, 2001 Evaluation of methods for detecting recombination from DNA sequences: computer simulations. Proc. Natl. Acad. Sci. USA 98: 13757-13762.
    • (2001) Proc. Natl. Acad. Sci. , vol.98 , pp. 13757-13762
    • Posada, D.1    Crandall, K.A.2
  • 34
    • 0036623258 scopus 로고    scopus 로고
    • An approximately unbiased test of phylogenetic tree selection
    • SHIMODAIRA, H., 2002 An approximately unbiased test of phylogenetic tree selection. Syst. Biol. 51: 492-508.
    • (2002) Syst. Biol. , vol.51 , pp. 492-508
    • Shimodaira, H.1
  • 35
    • 0036139287 scopus 로고    scopus 로고
    • CONSEL: For assessing the confidence of phylogenetic tree selection
    • SHIMODAIRA, H., and M. HASEGAWA, 2001 CONSEL: for assessing the confidence of phylogenetic tree selection. Bioinformatics 17: 1246-1247.
    • (2001) Bioinformatics , vol.17 , pp. 1246-1247
    • Shimodaira, H.1    Hasegawa, M.2
  • 36
    • 0034798494 scopus 로고    scopus 로고
    • The relative contributions of recombination and point mutation to the diversification of bacterial clones
    • SPRATT, B. G., W. P. HANAGE and E. J. FEIL, 2001 The relative contributions of recombination and point mutation to the diversification of bacterial clones. Curr. Opin. Microbiol. 4: 602-606.
    • (2001) Curr. Opin. Microbiol. , vol.4 , pp. 602-606
    • Spratt, B.G.1    Hanage, W.P.2    Feil, E.J.3
  • 38
    • 0034815472 scopus 로고    scopus 로고
    • Thermotoga petrophila sp. nov. and Thermotoga naphthophila sp. nov., two hyperthermophilic bacteria from the Kubiki oil reservoir in Niigata, Japan
    • TAKAHATA, Y., M. NISHIJIMA, T. HOAKI and T. MARUYAMA, 2001 Thermotoga petrophila sp. nov. and Thermotoga naphthophila sp. nov., two hyperthermophilic bacteria from the Kubiki oil reservoir in Niigata, Japan. Int. J. Syst. Evol. Microbiol. 51: 1901-1909.
    • (2001) Int. J. Syst. Evol. Microbiol. , vol.51 , pp. 1901-1909
    • Takahata, Y.1    Nishijima, M.2    Hoaki, T.3    Maruyama, T.4
  • 39
    • 14544287770 scopus 로고    scopus 로고
    • Genotypic diversity within a natural coastal bacterioplankton population
    • THOMPSON, J. R., S. PACOCHA, C. PHARINO, V. KLEPAC-CERAJ, D. E. HUNT et al., 2005 Genotypic diversity within a natural coastal bacterioplankton population. Science 307: 1311-1313.
    • (2005) Science , vol.307 , pp. 1311-1313
    • Thompson, J.R.1    Pacocha, S.2    Pharino, C.3    Klepac-Ceraj, V.4    Hunt, D.E.5
  • 40
    • 9944222667 scopus 로고    scopus 로고
    • Population genetics and phylogenetic inference in bacterial molecular systematics: The roles of migration and recombination in Bradyrhizobium species cohesion and delineation
    • VINUESA, P., C. SILVA, D. WERNER and E. MARTINEZ-ROMERO, 2005 Population genetics and phylogenetic inference in bacterial molecular systematics: the roles of migration and recombination in Bradyrhizobium species cohesion and delineation. Mol. Phylogenet. Evol. 34: 29-54.
    • (2005) Mol. Phylogenet. Evol. , vol.34 , pp. 29-54
    • Vinuesa, P.1    Silva, C.2    Werner, D.3    Martinez-Romero, E.4
  • 41
    • 0034897826 scopus 로고    scopus 로고
    • A novel approach to detecting and measuring recombination: New insights into evolution in viruses, bacteria, and mitochondria
    • WOROBEY, M., 2001 A novel approach to detecting and measuring recombination: new insights into evolution in viruses, bacteria, and mitochondria. Mol. Biol. Evol. 18: 1425-1434.
    • (2001) Mol. Biol. Evol. , vol.18 , pp. 1425-1434
    • Worobey, M.1
  • 42
    • 0030782415 scopus 로고    scopus 로고
    • Plasmid pRQ7 from the hyperthermophilic bacterium Thermotoga species strain RQ7 replicates by the rolling-circle mechanism
    • YU, J. S., and K. M. NOLL, 1997 Plasmid pRQ7 from the hyperthermophilic bacterium Thermotoga species strain RQ7 replicates by the rolling-circle mechanism. J. Bacteriol. 179: 7161-7164.
    • (1997) J. Bacteriol. , vol.179 , pp. 7161-7164
    • Yu, J.S.1    Noll, K.M.2


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