-
1
-
-
0032700191
-
A highly conserved plasmid from the extreme thermophile Thermotoga maritima MC24 is a member of a family of plasmids distributed worldwide
-
AKIMKINA, T., P. IVANOV, S. KOSTROV, T. SOKOLOVA, E. BONCH-OSMOLOVSKAYA et al., 1999 A highly conserved plasmid from the extreme thermophile Thermotoga maritima MC24 is a member of a family of plasmids distributed worldwide. Plasmid 42: 236-240.
-
(1999)
Plasmid
, vol.42
, pp. 236-240
-
-
Akimkina, T.1
Ivanov, P.2
Kostrov, S.3
Sokolova, T.4
Bonch-Osmolovskaya, E.5
-
3
-
-
0001972030
-
Protocol 12: Purification of plasmids from thermophilic and hyperthermophilic Archaea
-
edited by F. T. ROBB and A. R. PLACE. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
-
CHARBONNIER, F., and P. FORTERRE, 1995 Protocol 12: purification of plasmids from thermophilic and hyperthermophilic Archaea, pp. 87-90 in Archaea: A Laboratory Manual - Thermophiles, edited by F. T. ROBB and A. R. PLACE. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
-
(1995)
Archaea: A Laboratory Manual - Thermophiles
, pp. 87-90
-
-
Charbonnier, F.1
Forterre, P.2
-
4
-
-
0037470149
-
Carbohydrate-induced differential gene expression patterns in the hyperthermophilic bacterium Thermotoga maritima
-
CHHABRA, S. R., K. R. SHOCKLEY, S. B. CONNERS, K. L. SCOTT, R. D. WOLFINGER et al., 2003 Carbohydrate-induced differential gene expression patterns in the hyperthermophilic bacterium Thermotoga maritima. J. Biol. Chem. 278: 7540-7552.
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 7540-7552
-
-
Chhabra, S.R.1
Shockley, K.R.2
Conners, S.B.3
Scott, K.L.4
Wolfinger, R.D.5
-
5
-
-
0036407157
-
What are bacterial species?
-
COHAN, F. M., 2002 What are bacterial species? Annu. Rev. Microbiol. 56: 457-487.
-
(2002)
Annu. Rev. Microbiol.
, vol.56
, pp. 457-487
-
-
Cohan, F.M.1
-
6
-
-
0033485517
-
Improved microbial gene identification with GLIMMER
-
DELCHER, A. L., D. HARMON, S. KASIF, O. WHITE and S. L. SALZBERG, 1999 Improved microbial gene identification with GLIMMER. Nucleic Acids Res. 27: 4636-4641.
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 4636-4641
-
-
Delcher, A.L.1
Harmon, D.2
Kasif, S.3
White, O.4
Salzberg, S.L.5
-
7
-
-
0025788069
-
Recombination in Escherichia coli and the definition of biological species
-
DYKHUIZEN, D. E., and L. GREEN, 1991 Recombination in Escherichia coli and the definition of biological species. J. Bacteriol. 173: 7257-7268.
-
(1991)
J. Bacteriol.
, vol.173
, pp. 7257-7268
-
-
Dykhuizen, D.E.1
Green, L.2
-
8
-
-
2942555285
-
Analyses of clonality and the evolution of bacterial pathogens
-
FEIL, E. J., and M. C. ENRIGHT, 2004 Analyses of clonality and the evolution of bacterial pathogens. Curr. Opin. Microbiol. 7: 308-313.
-
(2004)
Curr. Opin. Microbiol.
, vol.7
, pp. 308-313
-
-
Feil, E.J.1
Enright, M.C.2
-
9
-
-
0034769889
-
Recombination and the population structures of bacterial pathogens
-
FEIL, E. J., and B. G. SPRATT, 2001 Recombination and the population structures of bacterial pathogens. Annu. Rev. Microbiol. 55: 561-590.
-
(2001)
Annu. Rev. Microbiol.
, vol.55
, pp. 561-590
-
-
Feil, E.J.1
Spratt, B.G.2
-
10
-
-
0033865030
-
Estimating the relative contributions of mutation and recombination to clonal diversification: A comparison between Neisseria meningitidis and Streptococcus pneumoniae
-
FEIL, E. J., M. C. ENRIGHT and B. G. SPRATT, 2000 Estimating the relative contributions of mutation and recombination to clonal diversification: a comparison between Neisseria meningitidis and Streptococcus pneumoniae. Res. Microbiol. 151: 465-469.
-
(2000)
Res. Microbiol.
, vol.151
, pp. 465-469
-
-
Feil, E.J.1
Enright, M.C.2
Spratt, B.G.3
-
11
-
-
0041317111
-
Microbiology. Biogeography for bacteria
-
FENCHEL, T., 2003 Microbiology. Biogeography for bacteria. Science 301: 925-926.
-
(2003)
Science
, vol.301
, pp. 925-926
-
-
Fenchel, T.1
-
12
-
-
1942528013
-
Cosmopolitan metapopulations of free-living microbial eukaryotes
-
FINLAY, B. J., and T. FENCHEL, 2004 Cosmopolitan metapopulations of free-living microbial eukaryotes. Protist 155: 237-244.
-
(2004)
Protist
, vol.155
, pp. 237-244
-
-
Finlay, B.J.1
Fenchel, T.2
-
14
-
-
23944437942
-
Opinion: Re-evaluating prokaryotic species
-
GEVERS, D., F. M. COHAN, J. G. LAWRENCE, B. G. SPRATT, T. COENYE et al., 2005 Opinion: re-evaluating prokaryotic species. Nat. Rev. Microbiol. 3: 733-739.
-
(2005)
Nat. Rev. Microbiol.
, vol.3
, pp. 733-739
-
-
Gevers, D.1
Cohan, F.M.2
Lawrence, J.G.3
Spratt, B.G.4
Coenye, T.5
-
15
-
-
22144486947
-
Fuzzy species among recombinogenic bacteria
-
HANAGE, W. P., C. FRASER and B. G. SPRATT, 2005 Fuzzy species among recombinogenic bacteria. BMC Biol. 3: 6.
-
(2005)
BMC Biol.
, vol.3
, pp. 6
-
-
Hanage, W.P.1
Fraser, C.2
Spratt, B.G.3
-
16
-
-
0028278946
-
A cryptic miniplasmid from the hyperthermophilic bacterium Thermotoga sp. strain RQ7
-
HARRIOTT, O. T., R. HUBER, K. O. STETTER, P. W. BETTS and K. M. NOLL, 1994 A cryptic miniplasmid from the hyperthermophilic bacterium Thermotoga sp. strain RQ7. J. Bacteriol. 176: 2759-2762.
-
(1994)
J. Bacteriol.
, vol.176
, pp. 2759-2762
-
-
Harriott, O.T.1
Huber, R.2
Stetter, K.O.3
Betts, P.W.4
Noll, K.M.5
-
17
-
-
33746041919
-
Thermotogales
-
edited by M. DWORKIN. Springer-Verlag, New York http://link.springer-ny. com/link/service/books/10125
-
HUBER, R., and M. HANNIG, 2005 Thermotogales, in The Prokaryotes: An Evolving Electronic Resource for the Microbiological Community, Ed. 3, Release 3.14, edited by M. DWORKIN. Springer-Verlag, New York (http://link.springer-ny. com/link/service/books/10125/).
-
(2005)
The Prokaryotes: An Evolving Electronic Resource for the Microbiological Community, Ed. 3, Release 3.14
-
-
Huber, R.1
Hannig, M.2
-
18
-
-
0022522022
-
Thermotoga maritima sp. nov. represents a new genus of unique extremely thermophilic eubacteria growing up to 90°C
-
HUBER, R., T. A. LANGWORTHY, H. KÖNING, M. THOMM, C. R. WOESE et al., 1986 Thermotoga maritima sp. nov. represents a new genus of unique extremely thermophilic eubacteria growing up to 90°C. Arch. Microbiol. 144: 324-333.
-
(1986)
Arch. Microbiol.
, vol.144
, pp. 324-333
-
-
Huber, R.1
Langworthy, T.A.2
Köning, H.3
Thomm, M.4
Woese, C.R.5
-
19
-
-
0031678692
-
SplitsTree: Analyzing and visualizing evolutionary data
-
HUSON, D. H., 1998 SplitsTree: analyzing and visualizing evolutionary data. Bioinformatics 14: 68-73.
-
(1998)
Bioinformatics
, vol.14
, pp. 68-73
-
-
Huson, D.H.1
-
20
-
-
0001218383
-
Thermotoga neapolitana sp. nov. of the extremely thermophilic, eubacterial genus Thermotoga
-
JANNASCH, H., R. HUBER, S. BELKIN and K. STETTER, 1988 Thermotoga neapolitana sp. nov. of the extremely thermophilic, eubacterial genus Thermotoga. Arch. Microbiol. 150: 103-104.
-
(1988)
Arch. Microbiol.
, vol.150
, pp. 103-104
-
-
Jannasch, H.1
Huber, R.2
Belkin, S.3
Stetter, K.4
-
21
-
-
14044262978
-
Genomic insights that advance the species definition for prokaryotes
-
USA
-
KONSTANTINIDIS, K. T., and J. M. TIEDJE, 2005 Genomic insights that advance the species definition for prokaryotes. Proc. Natl. Acad. Sci. USA 102: 2567-2572.
-
(2005)
Proc. Natl. Acad. Sci.
, vol.102
, pp. 2567-2572
-
-
Konstantinidis, K.T.1
Tiedje, J.M.2
-
22
-
-
0030854739
-
tRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence
-
LOWE, T. M., and S. R. EDDY, 1997 tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res. 25: 955-964.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 955-964
-
-
Lowe, T.M.1
Eddy, S.R.2
-
23
-
-
13444251528
-
RDP2: Recombination detection and analysis from sequence alignments
-
MARTIN, D. P., C. WILLIAMSON and D. POSADA, 2005 RDP2: recombination detection and analysis from sequence alignments. Bioinformatics 21: 260-262.
-
(2005)
Bioinformatics
, vol.21
, pp. 260-262
-
-
Martin, D.P.1
Williamson, C.2
Posada, D.3
-
24
-
-
21844466436
-
Gene transfer and genome plasticity in Thermotoga maritima, a model hyperthermophilic species
-
MONGODIN, E. F., I. R. HANCE, R. T. DEBOY, S. R. GILL, S. DAUGHERTY et al., 2005 Gene transfer and genome plasticity in Thermotoga maritima, a model hyperthermophilic species. J. Bacteriol. 187: 4935-4944.
-
(2005)
J. Bacteriol.
, vol.187
, pp. 4935-4944
-
-
Mongodin, E.F.1
Hance, I.R.2
Deboy, R.T.3
Gill, S.R.4
Daugherty, S.5
-
25
-
-
0033609333
-
Evidence for lateral gene transfer between Archaea and bacteria from genome sequence of Thermotoga maritima
-
NELSON, K. E., R. A. CLAYTON, S. R. GILL, M. L. GWINN, R. J. DODSON et al., 1999 Evidence for lateral gene transfer between Archaea and bacteria from genome sequence of Thermotoga maritima. Nature 399: 323-329.
-
(1999)
Nature
, vol.399
, pp. 323-329
-
-
Nelson, K.E.1
Clayton, R.A.2
Gill, S.R.3
Gwinn, M.L.4
Dodson, R.J.5
-
26
-
-
0141814674
-
Active self-splicing group I introns in the 23S rRNA genes of hyperthermophilic bacteria, derived from introns in eukaryotic organelles
-
USA
-
NESBØ, C. L., and W. F. DOOLITTLE, 2003a Active self-splicing group I introns in the 23S rRNA genes of hyperthermophilic bacteria, derived from introns in eukaryotic organelles. Proc. Natl. Acad. Sci. USA 100: 10806-10811.
-
(2003)
Proc. Natl. Acad. Sci.
, vol.100
, pp. 10806-10811
-
-
Nesbø, C.L.1
Doolittle, W.F.2
-
27
-
-
0242424342
-
Targeting clusters of transferred genes in Thermotoga maritima
-
NESBØ, C. L., and W. F. DOOLITTLE, 2003b Targeting clusters of transferred genes in Thermotoga maritima. Environ. Microbiol. 5: 1144-1154.
-
(2003)
Environ. Microbiol.
, vol.5
, pp. 1144-1154
-
-
Nesbø, C.L.1
Doolittle, W.F.2
-
28
-
-
0036335361
-
Suppressive subtractive hybridization detects extensive genomic diversity in Thermotoga maritima
-
NESBØ, C. L., K. E. NELSON and W. F. DOOLITTLE, 2002 Suppressive subtractive hybridization detects extensive genomic diversity in Thermotoga maritima. J. Bacteriol. 184: 4475-4488.
-
(2002)
J. Bacteriol.
, vol.184
, pp. 4475-4488
-
-
Nesbø, C.L.1
Nelson, K.E.2
Doolittle, W.F.3
-
29
-
-
3042735789
-
Whole-genome expression profiling of Thermotoga maritima in response to growth on sugars in a chemostat
-
NGUYEN, T. N., A. D. EJAZ, M. A. BRANCIERI, A. M. MIKULA, K. E. NELSON et al., 2004 Whole-genome expression profiling of Thermotoga maritima in response to growth on sugars in a chemostat. J. Bacteriol. 186: 4824-4828.
-
(2004)
J. Bacteriol.
, vol.186
, pp. 4824-4828
-
-
Nguyen, T.N.1
Ejaz, A.D.2
Brancieri, M.A.3
Mikula, A.M.4
Nelson, K.E.5
-
30
-
-
0033590220
-
Possible emergence of new geminiviruses by frequent recombination
-
PADIDAM, M., S. SAWYER and C. M. FAUQUET, 1999 Possible emergence of new geminiviruses by frequent recombination. Virology 265: 218-225.
-
(1999)
Virology
, vol.265
, pp. 218-225
-
-
Padidam, M.1
Sawyer, S.2
Fauquet, C.M.3
-
31
-
-
10344243528
-
Frequent recombination in a saltern population of Halorubrum
-
PAPKE, R. T., J. E. KOENIG, F. RODRIGUEZ-VALERA and W. F. DOOLITTLE, 2004 Frequent recombination in a saltern population of Halorubrum. Science 306: 1928-1929.
-
(2004)
Science
, vol.306
, pp. 1928-1929
-
-
Papke, R.T.1
Koenig, J.E.2
Rodriguez-Valera, F.3
Doolittle, W.F.4
-
32
-
-
0035923699
-
Evaluation of methods for detecting recombination from DNA sequences: Computer simulations
-
USA
-
POSADA, D., and K. A. CRANDALL, 2001 Evaluation of methods for detecting recombination from DNA sequences: computer simulations. Proc. Natl. Acad. Sci. USA 98: 13757-13762.
-
(2001)
Proc. Natl. Acad. Sci.
, vol.98
, pp. 13757-13762
-
-
Posada, D.1
Crandall, K.A.2
-
34
-
-
0036623258
-
An approximately unbiased test of phylogenetic tree selection
-
SHIMODAIRA, H., 2002 An approximately unbiased test of phylogenetic tree selection. Syst. Biol. 51: 492-508.
-
(2002)
Syst. Biol.
, vol.51
, pp. 492-508
-
-
Shimodaira, H.1
-
35
-
-
0036139287
-
CONSEL: For assessing the confidence of phylogenetic tree selection
-
SHIMODAIRA, H., and M. HASEGAWA, 2001 CONSEL: for assessing the confidence of phylogenetic tree selection. Bioinformatics 17: 1246-1247.
-
(2001)
Bioinformatics
, vol.17
, pp. 1246-1247
-
-
Shimodaira, H.1
Hasegawa, M.2
-
36
-
-
0034798494
-
The relative contributions of recombination and point mutation to the diversification of bacterial clones
-
SPRATT, B. G., W. P. HANAGE and E. J. FEIL, 2001 The relative contributions of recombination and point mutation to the diversification of bacterial clones. Curr. Opin. Microbiol. 4: 602-606.
-
(2001)
Curr. Opin. Microbiol.
, vol.4
, pp. 602-606
-
-
Spratt, B.G.1
Hanage, W.P.2
Feil, E.J.3
-
38
-
-
0034815472
-
Thermotoga petrophila sp. nov. and Thermotoga naphthophila sp. nov., two hyperthermophilic bacteria from the Kubiki oil reservoir in Niigata, Japan
-
TAKAHATA, Y., M. NISHIJIMA, T. HOAKI and T. MARUYAMA, 2001 Thermotoga petrophila sp. nov. and Thermotoga naphthophila sp. nov., two hyperthermophilic bacteria from the Kubiki oil reservoir in Niigata, Japan. Int. J. Syst. Evol. Microbiol. 51: 1901-1909.
-
(2001)
Int. J. Syst. Evol. Microbiol.
, vol.51
, pp. 1901-1909
-
-
Takahata, Y.1
Nishijima, M.2
Hoaki, T.3
Maruyama, T.4
-
39
-
-
14544287770
-
Genotypic diversity within a natural coastal bacterioplankton population
-
THOMPSON, J. R., S. PACOCHA, C. PHARINO, V. KLEPAC-CERAJ, D. E. HUNT et al., 2005 Genotypic diversity within a natural coastal bacterioplankton population. Science 307: 1311-1313.
-
(2005)
Science
, vol.307
, pp. 1311-1313
-
-
Thompson, J.R.1
Pacocha, S.2
Pharino, C.3
Klepac-Ceraj, V.4
Hunt, D.E.5
-
40
-
-
9944222667
-
Population genetics and phylogenetic inference in bacterial molecular systematics: The roles of migration and recombination in Bradyrhizobium species cohesion and delineation
-
VINUESA, P., C. SILVA, D. WERNER and E. MARTINEZ-ROMERO, 2005 Population genetics and phylogenetic inference in bacterial molecular systematics: the roles of migration and recombination in Bradyrhizobium species cohesion and delineation. Mol. Phylogenet. Evol. 34: 29-54.
-
(2005)
Mol. Phylogenet. Evol.
, vol.34
, pp. 29-54
-
-
Vinuesa, P.1
Silva, C.2
Werner, D.3
Martinez-Romero, E.4
-
41
-
-
0034897826
-
A novel approach to detecting and measuring recombination: New insights into evolution in viruses, bacteria, and mitochondria
-
WOROBEY, M., 2001 A novel approach to detecting and measuring recombination: new insights into evolution in viruses, bacteria, and mitochondria. Mol. Biol. Evol. 18: 1425-1434.
-
(2001)
Mol. Biol. Evol.
, vol.18
, pp. 1425-1434
-
-
Worobey, M.1
-
42
-
-
0030782415
-
Plasmid pRQ7 from the hyperthermophilic bacterium Thermotoga species strain RQ7 replicates by the rolling-circle mechanism
-
YU, J. S., and K. M. NOLL, 1997 Plasmid pRQ7 from the hyperthermophilic bacterium Thermotoga species strain RQ7 replicates by the rolling-circle mechanism. J. Bacteriol. 179: 7161-7164.
-
(1997)
J. Bacteriol.
, vol.179
, pp. 7161-7164
-
-
Yu, J.S.1
Noll, K.M.2
|