-
1
-
-
0029927276
-
Impact of plasmid presence and induction on cellular responses in fed batch cultures of Escherichia coli
-
Andersson L, Yang S, Neubauer P, Enfors SO. (1996). Impact of plasmid presence and induction on cellular responses in fed batch cultures of Escherichia coli . J Biotechnol 46:255-263
-
(1996)
J Biotechnol
, vol.46
, pp. 255-263
-
-
Andersson, L.1
Yang, S.2
Neubauer, P.3
Enfors, S.O.4
-
2
-
-
33751007565
-
Role of the ptsn gene product in catabolite repression of the pseudomonas putida tol toluene degradation pathway in chemostat cultures
-
Aranda-Olmedo I, Marín P, Ramos JL, Marqués S. (2006). Role of the ptsN gene product in catabolite repression of the Pseudomonas putida TOL toluene degradation pathway in chemostat cultures. Appl Environ Microbiol 72:7418-7421
-
(2006)
Appl Environ Microbiol
, vol.72
, pp. 7418-7421
-
-
Aranda-Olmedo, I.1
Marín, P.2
Ramos, J.L.3
Marqués, S.4
-
3
-
-
0018095944
-
Tol is a broad-host-range plasmid
-
Benson S, Shapiro J. (1978). TOL is a broad-host-range plasmid. J Bacteriol 135:278-280
-
(1978)
J Bacteriol
, vol.135
, pp. 278-280
-
-
Benson, S.1
Shapiro, J.2
-
4
-
-
0030901173
-
Genetic evidence of separate repressor and activator activities of the xylr regulator of the tol plasmid, pww0, of pseudomonas putida
-
Bertoni G, Pérez-Martín J, De Lorenzo V. (1997). Genetic evidence of separate repressor and activator activities of the XylR regulator of the TOL plasmid, pWW0, of Pseudomonas putida . Mol Microbiol 23:1221-1227
-
(1997)
Mol Microbiol
, vol.23
, pp. 1221-1227
-
-
Bertoni, G.1
Pérez-Martín, J.2
De Lorenzo, V.3
-
5
-
-
0026416683
-
Plasmid presence changes the relative levels of many host cell proteins and ribosome components in recombinant escherichia coli
-
Birnbaum S, Bailey JE. (1991). Plasmid presence changes the relative levels of many host cell proteins and ribosome components in recombinant Escherichia coli . Biotechnol Bioeng 37:736-745
-
(1991)
Biotechnol Bioeng
, vol.37
, pp. 736-745
-
-
Birnbaum, S.1
Bailey, J.E.2
-
6
-
-
0023694037
-
Evolution of a bacteria/plasmid association
-
Bouma JE, Lenski RE. (1988). Evolution of a bacteria/plasmid association. Nature 335:351-352
-
(1988)
Nature
, vol.335
, pp. 351-352
-
-
Bouma, J.E.1
Lenski, R.E.2
-
7
-
-
77955851732
-
Broad-host-range plasmid-mediated metabolic perturbations in Pseudomonas fl uorescens 13525
-
Buch AD, Archana G, Naresh Kumar G. (2010). Broad-host-range plasmid-mediated metabolic perturbations in Pseudomonas fl uorescens 13525. Appl Microbiol Biotechnol 88:209-218
-
(2010)
Appl Microbiol Biotechnol
, vol.88
, pp. 209-218
-
-
Buch, A.D.1
Archana, G.2
Naresh Kumar, G.3
-
8
-
-
67049109154
-
Resistance plasmid families in Enterobacteriaceae
-
Carattoli A. (2009). Resistance plasmid families in Enterobacteriaceae . Antimicrob Agents Chemother 53:2227-2238
-
(2009)
Antimicrob Agents Chemother
, vol.53
, pp. 2227-2238
-
-
Carattoli, A.1
-
9
-
-
0032589264
-
The iiantr (ptsn) protein of pseudomonas putida mediates the c source inhibition of the sigma54-dependent pu promoter of the tol plasmid
-
Cases I, Pérez-Martín J, De Lorenzo V. (1999). The IIANtr (PtsN) protein of Pseudomonas putida mediates the C source inhibition of the sigma54-dependent Pu promoter of the TOL plasmid. J Biol Chem 274:15562-15568
-
(1999)
J Biol Chem
, vol.274
, pp. 15562-15568
-
-
Cases, I.1
Pérez-Martín, J.2
De Lorenzo, V.3
-
10
-
-
84866426379
-
Basis for the essentiality of H-NS family members in Pseudomonas aeruginosa
-
Castang S, Dove SL. (2012). Basis for the essentiality of H-NS family members in Pseudomonas aeruginosa . J Bacteriol 194:5101-5109
-
(2012)
J Bacteriol
, vol.194
, pp. 5101-5109
-
-
Castang, S.1
Dove, S.L.2
-
11
-
-
33750283857
-
Burkholderia xenovorans LB400 harbors a multi-replicon, 9.73-Mbp genome shaped for versatility
-
Chain PS, Denef VJ, Konstantinidis KT, Vergez LM, Agulló L, Reyes VL, Hauser L, Córdova M, Gómez L, González M, Land M, Lao V, Larimer F, LiPuma JJ, Mahenthiralingam E, Malfatti SA, Marx CJ, Parnell JJ, Ramette A, Richardson P, Seeger M, Smith D, Spilker T, Sul WJ, Tsoi TV, Ulrich LE, Zhulin IB, Tiedje JM. (2006). Burkholderia xenovorans LB400 harbors a multi-replicon, 9.73-Mbp genome shaped for versatility. Proc Natl Acad Sci USA 103: 15280-15287
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 15280-15287
-
-
Chain, P.S.1
Denef, V.J.2
Konstantinidis, K.T.3
Vergez, L.M.4
Agulló, L.5
Reyes, V.L.6
Hauser, L.7
Córdova, M.8
Gómez, L.9
González, M.10
Land, M.11
Lao, V.12
Larimer, F.13
Lipuma, J.J.14
Mahenthiralingam, E.15
Malfatti, S.A.16
Marx, C.J.17
Parnell, J.J.18
Ramette, A.19
Richardson, P.20
Seeger, M.21
Smith, D.22
Spilker, T.23
Sul, W.J.24
Tsoi, T.V.25
Ulrich, L.E.26
Zhulin, I.B.27
Tiedje, J.M.28
more..
-
12
-
-
0028128866
-
Purifi cation of the LysR family regulator, ClcR, and its interaction with the Pseudomonas putida clcABD chlorocatechol operon promoter
-
Coco WM, Parsek MR, Chakrabarty AM. (1994). Purifi cation of the LysR family regulator, ClcR, and its interaction with the Pseudomonas putida clcABD chlorocatechol operon promoter. J Bacteriol 176:5530-5533
-
(1994)
J Bacteriol
, vol.176
, pp. 5530-5533
-
-
Coco, W.M.1
Parsek, M.R.2
Chakrabarty, A.M.3
-
13
-
-
0347992016
-
Amelioration of the cost of conjugative plasmid carriage in escherichia coli k12
-
Dahlberg C, Chao L. (2003). Amelioration of the cost of conjugative plasmid carriage in Escherichia coli K12. Genetics 165:1641-1649
-
(2003)
Genetics
, vol.165
, pp. 1641-1649
-
-
Dahlberg, C.1
Chao, L.2
-
14
-
-
0018427214
-
The effect of a plasmid on growth and survival of e coli
-
Dale JW, Smith JT. (1979). The effect of a plasmid on growth and survival of E. coli . Antonie Van Leeuwenhoek 45:103-111
-
(1979)
Antonie Van Leeuwenhoek
, vol.45
, pp. 103-111
-
-
Dale, J.W.1
Smith, J.T.2
-
15
-
-
78651511022
-
Tol plasmid carriage enhances biofilm formation and increases extracellular dna content in pseudomonas putida kt2440
-
DAlvise PW, Sjøholm OR, Yankelevich T, Jin Y, Wuertz S, Smets BF. (2010). TOL plasmid carriage enhances biofilm formation and increases extracellular DNA content in Pseudomonas putida KT2440. FEMS Microbiol Lett 312:84-92
-
(2010)
Fems Microbiol Lett
, vol.312
, pp. 84-92
-
-
Dalvise, P.W.1
Sjøholm, O.R.2
Yankelevich, T.3
Jin, Y.4
Wuertz, S.5
Smets, B.F.6
-
16
-
-
0025797356
-
An upstream xylr-and ihf-induced nucleoprotein complex regulates the sigma 54-dependent pu promoter of tol plasmid
-
De Lorenzo V, Herrero M, Metzke M, Timmis KN. (1991). An upstream XylR-and IHF-induced nucleoprotein complex regulates the sigma 54-dependent Pu promoter of TOL plasmid. EMBO J 10:1159-1167
-
(1991)
Embo J
, vol.10
, pp. 1159-1167
-
-
De Lorenzo, V.1
Herrero, M.2
Metzke, M.3
Timmis, K.N.4
-
18
-
-
76949089832
-
Bacterial nucleoid-associated proteins, nucleoid structure and gene expression
-
Dillon SC, Dorman CJ. (2010). Bacterial nucleoid-associated proteins, nucleoid structure and gene expression. Nat Rev Microbiol 8:185-195
-
(2010)
Nat Rev Microbiol
, vol.8
, pp. 185-195
-
-
Dillon, S.C.1
Dorman, C.J.2
-
19
-
-
25444496227
-
The evolution of a conjugative plasmid and its ability to increase bacterial fi tness
-
Dionisio F, Conceição IC, Marques AC, Fernandes L, Gordo I. (2005). The evolution of a conjugative plasmid and its ability to increase bacterial fi tness. Biol Lett 1:250-252
-
(2005)
Biol Lett
, vol.1
, pp. 250-252
-
-
Dionisio, F.1
Conceição, I.C.2
Marques, A.C.3
Fernandes, L.4
Gordo, I.5
-
20
-
-
64349107871
-
DNA bridging and antibridging: A role for bacterial nucleoidassociated proteins in regulating the expression of laterally acquired genes
-
Dorman CJ, Kane KA. (2009). DNA bridging and antibridging: a role for bacterial nucleoidassociated proteins in regulating the expression of laterally acquired genes. FEMS Microbiol Rev 33:587-592
-
(2009)
Fems Microbiol Rev
, vol.33
, pp. 587-592
-
-
Dorman, C.J.1
Kane, K.A.2
-
21
-
-
33846511690
-
An H-NS-like stealth protein aids horizontal DNA transmission in bacteria
-
Doyle M, Fookes M, Ivens A, Mangan MW, Wain J, Dorman CJ. (2007). An H-NS-like stealth protein aids horizontal DNA transmission in bacteria. Science 315:251-252
-
(2007)
Science
, vol.315
, pp. 251-252
-
-
Doyle, M.1
Fookes, M.2
Ivens, A.3
Mangan, M.W.4
Wain, J.5
Dorman, C.J.6
-
22
-
-
0025856969
-
Stability of tol plasmid pww0 in pseudomonas putida mt-2 under non-selective conditions in continuous culture
-
Duetz WA, van Andel JG. (1991). Stability of TOL plasmid pWW0 in Pseudomonas putida mt-2 under non-selective conditions in continuous culture. J Gen Microbiol 137:1369-1374
-
(1991)
J Gen Microbiol
, vol.137
, pp. 1369-1374
-
-
Duetz, W.A.1
Van Andel, J.G.2
-
23
-
-
0015781618
-
Transmissible plasmid coding early enzymes of naphthalene oxidation in Pseudomonas putida
-
Dunn NW, Gunsalus IC. (1973). Transmissible plasmid coding early enzymes of naphthalene oxidation in Pseudomonas putida . J Bacteriol 114:974-979
-
(1973)
J Bacteriol
, vol.114
, pp. 974-979
-
-
Dunn, N.W.1
Gunsalus, I.C.2
-
24
-
-
0016770498
-
Inhibition of cell division in Escherichia coli K-12 by the R-factor R1 and copy mutants of R1
-
Engberg B, Hjalmarsson K, Nordström K. (1975). Inhibition of cell division in Escherichia coli K-12 by the R-factor R1 and copy mutants of R1. J Bacteriol 124:633-640
-
(1975)
J Bacteriol
, vol.124
, pp. 633-640
-
-
Engberg, B.1
Hjalmarsson, K.2
Nordström, K.3
-
25
-
-
84866172978
-
Enhanced tolerance to naphthalene and enhanced rhizoremediation performance for pseudomonas putida kt2440 via the nah7 catabolic plasmid
-
Fernández M, Niqui-Arroyo JL, Conde S, Ramos JL, Duque E. (2012). Enhanced tolerance to naphthalene and enhanced rhizoremediation performance for Pseudomonas putida KT2440 via the NAH7 catabolic plasmid. Appl Environ Microbiol 78:5104-5110
-
(2012)
Appl Environ Microbiol
, vol.78
, pp. 5104-5110
-
-
Fernández, M.1
Niqui-Arroyo, J.L.2
Conde, S.3
Ramos, J.L.4
Duque, E.5
-
28
-
-
33644745555
-
The clc element of Pseudomonas sp. strain B13, a genomic island with various catabolic properties
-
Gaillard M, Vallaeys T, Vorhölter FJ, Minoia M, Werlen C, Sentchilo V, Pühler A, van Der Meer JR. (2006). The clc element of Pseudomonas sp. strain B13, a genomic island with various catabolic properties. J Bacteriol 188:1999-2013
-
(2006)
J Bacteriol
, vol.188
, pp. 1999-2013
-
-
Gaillard, M.1
Vallaeys, T.2
Vorhölter, F.J.3
Minoia, M.4
Werlen, C.5
Sentchilo, V.6
Pühler, A.7
Van Der Meer, J.R.8
-
29
-
-
44349111947
-
Host and invader impact of transfer of the clc genomic island into pseudomonas aeruginosa pao1
-
Gaillard M, Pernet N, Vogne C, Hagenbüchle O, van Der Meer JR. (2008). Host and invader impact of transfer of the clc genomic island into Pseudomonas aeruginosa PAO1. Proc Natl Acad Sci USA 105:7058-7063
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 7058-7063
-
-
Gaillard, M.1
Pernet, N.2
Vogne, C.3
Hagenbüchle, O.4
Van Der Meer, J.R.5
-
30
-
-
77952600379
-
Transcriptome analysis of the mobile genome ICE clc in Pseudomonas knackmussii B13
-
Gaillard M, Pradervand N, Minoia M, Sentchilo V, Johnson D, van Der Meer J. (2010). Transcriptome analysis of the mobile genome ICE clc in Pseudomonas knackmussii B13. BMC Microbiol 10:153
-
(2010)
BMC Microbiol
, vol.10
, pp. 153
-
-
Gaillard, M.1
Pradervand, N.2
Minoia, M.3
Sentchilo, V.4
Johnson, D.5
Van Der Meer, J.6
-
31
-
-
64349087867
-
The diversity of conjugative relaxases and its application in plasmid classifi cation
-
Garcillán-Barcia MP, Francia MV, De La Cruz F. (2009). The diversity of conjugative relaxases and its application in plasmid classifi cation. FEMS Microbiol Rev 33:657-687
-
(2009)
Fems Microbiol Rev
, vol.33
, pp. 657-687
-
-
Garcillán-Barcia, M.P.1
Francia, M.V.2
De La Cruz, F.3
-
32
-
-
79960966271
-
Identification of bacterial plasmids based on mobility and plasmid population biology
-
Garcillán-Barcia MP, Alvarado A, De La Cruz F. (2011). Identification of bacterial plasmids based on mobility and plasmid population biology. FEMS Microbiol Rev 35:936-956
-
(2011)
Fems Microbiol Rev
, vol.35
, pp. 936-956
-
-
Garcillán-Barcia, M.P.1
Alvarado, A.2
De La Cruz, F.3
-
33
-
-
0034045195
-
Characterization of transposon tn 1549, conferring vanb-type resistance in enterococcus spp
-
Garnier F, Taourit S, Glaser P, Courvalin P, Galimand M. (2000). Characterization of transposon Tn 1549, conferring VanB-type resistance in Enterococcus spp. Microbiology 146:1481-1489
-
(2000)
Microbiology
, vol.146
, pp. 1481-1489
-
-
Garnier, F.1
Taourit, S.2
Glaser, P.3
Courvalin, P.4
Galimand, M.5
-
34
-
-
0035954733
-
Natural conjugative plasmids induce bacterial biofilm development
-
Ghigo JM. (2001). Natural conjugative plasmids induce bacterial biofilm development. Nature 412:442-445
-
(2001)
Nature
, vol.412
, pp. 442-445
-
-
Ghigo, J.M.1
-
35
-
-
0036800450
-
Diversity of transconjugants that acquired plasmid pjp4 or pemt1 after inoculation of a donor strain in the A-and B-horizon of an agricultural soil and description of Burkholderia hospita sp. Nov. and Burkholderia terricola sp. Nov
-
Goris J, Dejonghe W, Falsen E, De Clerck E, Geeraerts B, Willems A, Top E, Vandamme P, De Vos P. (2002). Diversity of transconjugants that acquired plasmid pJP4 or pEMT1 after inoculation of a donor strain in the A-and B-horizon of an agricultural soil and description of Burkholderia hospita sp. nov. and Burkholderia terricola sp. nov. Syst Appl Microbiol 25:340-352
-
(2002)
Syst Appl Microbiol
, vol.25
, pp. 340-352
-
-
Goris, J.1
Dejonghe, W.2
Falsen, E.3
De Clerck, E.4
Geeraerts, B.5
Willems, A.6
Top, E.7
Vandamme, P.8
De Vos, P.9
-
37
-
-
80052333445
-
The repertoire of ice in prokaryotes underscores the unity, diversity, and ubiquity of conjugation
-
Guglielmini J, Quintais L, Garcillán-Barcia MP, De La Cruz F, Rocha EP. (2011). The repertoire of ICE in prokaryotes underscores the unity, diversity, and ubiquity of conjugation. PLoS Genet 7:e1002222
-
(2011)
Plos Genet
, vol.7
, pp. e1002222
-
-
Guglielmini, J.1
Quintais, L.2
Garcillán-Barcia, M.P.3
De La Cruz, F.4
Rocha, E.P.5
-
38
-
-
67949083649
-
Competition favours reduced cost of plasmids to host bacteria
-
Haft RJ, Mittler JE, Traxler B. (2009). Competition favours reduced cost of plasmids to host bacteria. ISME J 3:761-769
-
(2009)
ISME J
, vol.3
, pp. 761-769
-
-
Haft, R.J.1
Mittler, J.E.2
Traxler, B.3
-
39
-
-
0029795374
-
The beta-ketoadipate pathway and the biology of self-identity
-
Harwood CS, Parales RE. (1996). The beta-ketoadipate pathway and the biology of self-identity. Annu Rev Microbiol 50:553-590
-
(1996)
Annu Rev Microbiol
, vol.50
, pp. 553-590
-
-
Harwood, C.S.1
Parales, R.E.2
-
40
-
-
0023394536
-
Expression of the regulatory gene xyls on the tol plasmid is positively controlled by the xylr gene product
-
Inouye S, Nakazawa A, Nakazawa T. (1987). Expression of the regulatory gene xylS on the TOL plasmid is positively controlled by the xylR gene product. Proc Natl Acad Sci USA 84:5182-5186
-
(1987)
Proc Natl Acad Sci USA
, vol.84
, pp. 5182-5186
-
-
Inouye, S.1
Nakazawa, A.2
Nakazawa, T.3
-
41
-
-
0018627946
-
Effect of R plasmid RP1 on the nutritional requirements of Escherichia coli in batch culture
-
Klemperer RM, Ismail NT, Brown MR. (1979). Effect of R plasmid RP1 on the nutritional requirements of Escherichia coli in batch culture. J Gen Microbiol 115:325-331
-
(1979)
J Gen Microbiol
, vol.115
, pp. 325-331
-
-
Klemperer, R.M.1
Ismail, N.T.2
Brown, M.R.3
-
42
-
-
0029097377
-
Catabolite-mediated mutations in alternate toluene degradative pathways in Pseudomonas putida
-
Leddy MB, Phipps DW, Ridgway HF. (1995). Catabolite-mediated mutations in alternate toluene degradative pathways in Pseudomonas putida . J Bacteriol 177:4713-4720
-
(1995)
J Bacteriol
, vol.177
, pp. 4713-4720
-
-
Leddy, M.B.1
Phipps, D.W.2
Ridgway, H.F.3
-
43
-
-
0022358659
-
Expression of tetracycline resistance in pbr322 derivatives reduces the reproductive fi tness of plasmid-containing escherichia coli
-
Lee SW, Edlin G. (1985). Expression of tetracycline resistance in pBR322 derivatives reduces the reproductive fi tness of plasmid-containing Escherichia coli . Gene 39:173-180
-
(1985)
Gene
, vol.39
, pp. 173-180
-
-
Lee, S.W.1
Edlin, G.2
-
44
-
-
0030908980
-
Impact of plasmid pqbr103 acquisition and carriage on the phytosphere fi tness of pseudomonas fl uorescens sbw25: Burden and benefi t
-
Lilley AK, Bailey MJ. (1997). Impact of plasmid pQBR103 acquisition and carriage on the phytosphere fi tness of Pseudomonas fl uorescens SBW25: burden and benefi t. Appl Environ Microbiol 63:1584-1587
-
(1997)
Appl Environ Microbiol
, vol.63
, pp. 1584-1587
-
-
Lilley, A.K.1
Bailey, M.J.2
-
45
-
-
0037423746
-
Complete nucleotide sequence of carbazole/dioxin-degrading plasmid pcar1 in pseudomonas resinovorans strain ca10 indicates its mosaicity and the presence of large catabolic transposon tn 4676
-
Maeda K, Nojiri H, Shintani M, Yoshida T, Habe H, Omori T. (2003). Complete nucleotide sequence of carbazole/dioxin-degrading plasmid pCAR1 in Pseudomonas resinovorans strain CA10 indicates its mosaicity and the presence of large catabolic transposon Tn 4676 . J Mol Biol 326:21-33
-
(2003)
J Mol Biol
, vol.326
, pp. 21-33
-
-
Maeda, K.1
Nojiri, H.2
Shintani, M.3
Yoshida, T.4
Habe, H.5
Omori, T.6
-
46
-
-
0029174957
-
Role of sigma S in transcription from the positively controlled Pm promoter of the TOL plasmid of Pseudomonas putida
-
Marqués S, Gallegos MT, Ramos JL. (1995). Role of sigma S in transcription from the positively controlled Pm promoter of the TOL plasmid of Pseudomonas putida . Mol Microbiol 18:851-857
-
(1995)
Mol Microbiol
, vol.18
, pp. 851-857
-
-
Marqués, S.1
Gallegos, M.T.2
Ramos, J.L.3
-
47
-
-
0032469908
-
Activation and repression of transcription at the double tandem divergent promoters for the xylR and xylS genes of the TOL plasmid of Pseudomonas putida
-
Marqués S, Gallegos MT, Manzanera M, Holtel A, Timmis KN, Ramos JL. (1998). Activation and repression of transcription at the double tandem divergent promoters for the xylR and xylS genes of the TOL plasmid of Pseudomonas putida . J Bacteriol 180:2889-2894
-
(1998)
J Bacteriol
, vol.180
, pp. 2889-2894
-
-
Marqués, S.1
Gallegos, M.T.2
Manzanera, M.3
Holtel, A.4
Timmis, K.N.5
Ramos, J.L.6
-
48
-
-
0032586644
-
The XylSdependent Pm promoter is transcribed in vivo by RNA polymerase with sigma 32 or sigma 38 depending on the growth phase
-
Marqués S, Manzanera M, González-Pérez MM, Gallegos MT, Ramos JL. (1999). The XylSdependent Pm promoter is transcribed in vivo by RNA polymerase with sigma 32 or sigma 38 depending on the growth phase. Mol Microbiol 31:1105-1113
-
(1999)
Mol Microbiol
, vol.31
, pp. 1105-1113
-
-
Marqués, S.1
Manzanera, M.2
González-Pérez, M.M.3
Gallegos, M.T.4
Ramos, J.L.5
-
49
-
-
78049434143
-
Genome sequence of the dioxin-mineralizing bacterium sphingomonas wittichii rw1
-
Miller TR, Delcher AL, Salzberg SL, Saunders E, Detter JC, Halden RU. (2010). Genome sequence of the dioxin-mineralizing bacterium Sphingomonas wittichii RW1. J Bacteriol 192:6101-6102
-
(2010)
J Bacteriol
, vol.192
, pp. 6101-6102
-
-
Miller, T.R.1
Delcher, A.L.2
Salzberg, S.L.3
Saunders, E.4
Detter, J.C.5
Halden, R.U.6
-
50
-
-
34948813038
-
Transcriptome analysis of pseudomonas putida kt2440 harboring the completely sequenced incp-7 plasmid pcar1
-
Miyakoshi M, Shintani M, Terabayashi T, Kai S, Yamane H, Nojiri H. (2007). Transcriptome analysis of Pseudomonas putida KT2440 harboring the completely sequenced IncP-7 plasmid pCAR1. J Bacteriol 189:6849-6860
-
(2007)
J Bacteriol
, vol.189
, pp. 6849-6860
-
-
Miyakoshi, M.1
Shintani, M.2
Terabayashi, T.3
Kai, S.4
Yamane, H.5
Nojiri, H.6
-
51
-
-
60549092956
-
High-resolution mapping of plasmid transcriptomes in different host bacteria
-
Miyakoshi M, Nishida H, Shintani M, Yamane H, Nojiri H. (2009). High-resolution mapping of plasmid transcriptomes in different host bacteria. BMC Genomics 10
-
(2009)
BMC Genomics
, vol.10
-
-
Miyakoshi, M.1
Nishida, H.2
Shintani, M.3
Yamane, H.4
Nojiri, H.5
-
52
-
-
84867997033
-
ParI, an orphan ParA family protein from Pseudomonas putida KT2440-specific genomic island, interferes with the partition system of IncP-7 plasmids
-
Miyakoshi M, Shintani M, Inoue K, Terabayashi T, Sai F, Ohkuma M, Nojiri H, Nagata Y, Tsuda M. (2012). ParI, an orphan ParA family protein from Pseudomonas putida KT2440-specific genomic island, interferes with the partition system of IncP-7 plasmids. Environ Microbiol 14:2946-2959
-
(2012)
Environ Microbiol
, vol.14
, pp. 2946-2959
-
-
Miyakoshi, M.1
Shintani, M.2
Inoue, K.3
Terabayashi, T.4
Sai, F.5
Ohkuma, M.6
Nojiri, H.7
Nagata, Y.8
Tsuda, M.9
-
53
-
-
78751687819
-
A dual functional origin of transfer in the ICE clc genomic island of Pseudomonas knackmussii B13
-
Miyazaki R, van Der Meer JR. (2011a). A dual functional origin of transfer in the ICE clc genomic island of Pseudomonas knackmussii B13. Mol Microbiol 79:743-758
-
(2011)
Mol Microbiol
, vol.79
, pp. 743-758
-
-
Miyazaki, R.1
Van Der Meer, J.R.2
-
54
-
-
84930904699
-
How can a dual oriT system contribute to effi cient transfer of an integrative and conjugative element?
-
Miyazaki R, van Der Meer JR. (2011b). How can a dual oriT system contribute to effi cient transfer of an integrative and conjugative element?. Mob Genet Elem 1:82-84
-
(2011)
Mob Genet Elem
, vol.1
, pp. 82-84
-
-
Miyazaki, R.1
Van Der Meer, J.R.2
-
55
-
-
52649135569
-
Characterization of the traD operon of naphthalene-catabolic plasmid NAH7: A host-range modifi er in conjugative transfer
-
Miyazaki R, Ohtsubo Y, Nagata Y, Tsuda M. (2008). Characterization of the traD operon of naphthalene-catabolic plasmid NAH7: a host-range modifi er in conjugative transfer. J Bacteriol 190:6281-6289
-
(2008)
J Bacteriol
, vol.190
, pp. 6281-6289
-
-
Miyazaki, R.1
Ohtsubo, Y.2
Nagata, Y.3
Tsuda, M.4
-
56
-
-
77955289214
-
The Crc global regulator inhibits the Pseudomonas putida pWW0 toluene/xylene assimilation pathway by repressing the translation of regulatory and structural genes
-
Moreno R, Fonseca P, Rojo F. (2010). The Crc global regulator inhibits the Pseudomonas putida pWW0 toluene/xylene assimilation pathway by repressing the translation of regulatory and structural genes. J Biol Chem 285:24412-24419
-
(2010)
J Biol Chem
, vol.285
, pp. 24412-24419
-
-
Moreno, R.1
Fonseca, P.2
Rojo, F.3
-
57
-
-
0037345571
-
Evolution of a chlorobenzene degradative pathway among bacteria in a contaminated groundwater mediated by a genomic island in Ralstonia
-
Müller TA, Werlen C, Spain J, Van Der Meer JR. (2003). Evolution of a chlorobenzene degradative pathway among bacteria in a contaminated groundwater mediated by a genomic island in Ralstonia . Environ Microbiol 5:163-173
-
(2003)
Environ Microbiol
, vol.5
, pp. 163-173
-
-
Müller, T.A.1
Werlen, C.2
Spain, J.3
Van Der Meer, J.R.4
-
58
-
-
0017883379
-
Tol plasmid in pseudomonas aeruginosa pao: Thermosensitivity of selfmaintenance and inhibition of host cell growth
-
Nakazawa T. (1978). TOL plasmid in Pseudomonas aeruginosa PAO: thermosensitivity of selfmaintenance and inhibition of host cell growth. J Bacteriol 133:527-535
-
(1978)
J Bacteriol
, vol.133
, pp. 527-535
-
-
Nakazawa, T.1
-
59
-
-
0042530132
-
Dual labeling of pseudomonas putida with fl uorescent proteins for in situ monitoring of conjugal transfer of the tol plasmid
-
Nancharaiah Y, Wattiau P, Wuertz S, Bathe S, Mohan S, Wilderer P, Hausner M. (2003). Dual labeling of Pseudomonas putida with fl uorescent proteins for in situ monitoring of conjugal transfer of the TOL plasmid. Appl Environ Microbiol 69:4846-4852
-
(2003)
Appl Environ Microbiol
, vol.69
, pp. 4846-4852
-
-
Nancharaiah, Y.1
Wattiau, P.2
Wuertz, S.3
Bathe, S.4
Mohan, S.5
Wilderer, P.6
Hausner, M.7
-
60
-
-
33746008173
-
Selective silencing of foreign dna with low gc content by the h-ns protein in salmonella
-
Navarre WW, Porwollik S, Wang Y, McClelland M, Rosen H, Libby SJ, Fang FC. (2006). Selective silencing of foreign DNA with low GC content by the H-NS protein in Salmonella . Science 313:236-238
-
(2006)
Science
, vol.313
, pp. 236-238
-
-
Navarre, W.W.1
Porwollik, S.2
Wang, Y.3
McClelland, M.4
Rosen, H.5
Libby, S.J.6
Fang, F.C.7
-
61
-
-
0034019603
-
A 90-kilobase conjugative chromosomal element coding for biphenyl and salicylate catabolism in Pseudomonas putida KF715
-
Nishi A, Tominaga K, Furukawa K. (2000). A 90-kilobase conjugative chromosomal element coding for biphenyl and salicylate catabolism in Pseudomonas putida KF715. J Bacteriol 182:1949-1955
-
(2000)
J Bacteriol
, vol.182
, pp. 1949-1955
-
-
Nishi, A.1
Tominaga, K.2
Furukawa, K.3
-
62
-
-
84856606092
-
Structural and molecular genetic analyses of the bacterial carbazole degradation system
-
Nojiri H. (2012). Structural and molecular genetic analyses of the bacterial carbazole degradation system. Biosci Biotechnol Biochem 76:1-18
-
(2012)
Biosci Biotechnol Biochem
, vol.76
, pp. 1-18
-
-
Nojiri, H.1
-
63
-
-
0034981075
-
Genetic characterization and evolutionary implications of a car gene cluster in the carbazole degrader Pseudomonas sp. strain CA10
-
Nojiri H, Sekiguchi H, Maeda K, Urata M, Nakai S, Yoshida T, Habe H, Omori T. (2001). Genetic characterization and evolutionary implications of a car gene cluster in the carbazole degrader Pseudomonas sp. strain CA10. J Bacteriol 183:3663-3679
-
(2001)
J Bacteriol
, vol.183
, pp. 3663-3679
-
-
Nojiri, H.1
Sekiguchi, H.2
Maeda, K.3
Urata, M.4
Nakai, S.5
Yoshida, T.6
Habe, H.7
Omori, T.8
-
64
-
-
2142659318
-
Divergence of mobile genetic elements involved in the distribution of xenobiotic-catabolic capacity
-
Nojiri H, Shintani M, Omori T. (2004). Divergence of mobile genetic elements involved in the distribution of xenobiotic-catabolic capacity. Appl Microbiol Biotechnol 64:154-174
-
(2004)
Appl Microbiol Biotechnol
, vol.64
, pp. 154-174
-
-
Nojiri, H.1
Shintani, M.2
Omori, T.3
-
65
-
-
0346666706
-
Novel approach to the improvement of biphenyl and polychlorinated biphenyl degradation activity: Promoter implantation by homologous recombination
-
Ohtsubo Y, Shimura M, Delawary M, Kimbara K, Takagi M, Kudo T, Ohta A, Nagata Y. (2003). Novel approach to the improvement of biphenyl and polychlorinated biphenyl degradation activity: promoter implantation by homologous recombination. Appl Environ Microbiol 69:146-153
-
(2003)
Appl Environ Microbiol
, vol.69
, pp. 146-153
-
-
Ohtsubo, Y.1
Shimura, M.2
Delawary, M.3
Kimbara, K.4
Takagi, M.5
Kudo, T.6
Ohta, A.7
Nagata, Y.8
-
66
-
-
33744471909
-
Identification of a response regulator gene for catabolite control from a pcb-degrading beta-proteobacteria, acidovorax sp kks102
-
Ohtsubo Y, Goto H, Nagata Y, Kudo T, Tsuda M. (2006). Identification of a response regulator gene for catabolite control from a PCB-degrading beta-proteobacteria, Acidovorax sp. KKS102. Mol Microbiol 60:1563-1575
-
(2006)
Mol Microbiol
, vol.60
, pp. 1563-1575
-
-
Ohtsubo, Y.1
Goto, H.2
Nagata, Y.3
Kudo, T.4
Tsuda, M.5
-
67
-
-
84866309711
-
Conjugal transfer of PCB/biphenyl degradation genes in Acidovorax sp. KKS102 located on integrative and conjugative element
-
Ohtsubo Y, Ishibashi Y, Naganawa H, Hirokawa S, Atobe S, Nagata Y, Tsuda M. (2012). Conjugal transfer of PCB/biphenyl degradation genes in Acidovorax sp. KKS102 located on integrative and conjugative element. J Bacteriol 194:4237-4248
-
(2012)
J Bacteriol
, vol.194
, pp. 4237-4248
-
-
Ohtsubo, Y.1
Ishibashi, Y.2
Naganawa, H.3
Hirokawa, S.4
Atobe, S.5
Nagata, Y.6
Tsuda, M.7
-
69
-
-
33646822101
-
Global transcriptional analysis of metabolic burden due to plasmid maintenance in escherichia coli dh5 alpha during batch fermentation
-
Ow D, Nissom P, Philp R, Oh S, Yap M. (2006). Global transcriptional analysis of metabolic burden due to plasmid maintenance in Escherichia coli DH5 alpha during batch fermentation. Enz Microb Technol 39:391-398
-
(2006)
Enz Microb Technol
, vol.39
, pp. 391-398
-
-
Ow, D.1
Nissom, P.2
Philp, R.3
Oh, S.4
Yap, M.5
-
70
-
-
0034888748
-
Genetic and structural organization of the aminophenol catabolic operon and its implication for evolutionary process
-
Park HS, Kim HS. (2001). Genetic and structural organization of the aminophenol catabolic operon and its implication for evolutionary process. J Bacteriol 183:5074-5081
-
(2001)
J Bacteriol
, vol.183
, pp. 5074-5081
-
-
Park, H.S.1
Kim, H.S.2
-
71
-
-
0028565028
-
Interaction of two lysr-type regulatory proteins catr and clcr with heterologous promoters: Functional and evolutionary implications
-
Parsek MR, McFall SM, Shinabarger DL, Chakrabarty AM. (1994). Interaction of two LysR-type regulatory proteins CatR and ClcR with heterologous promoters: functional and evolutionary implications. Proc Natl Acad Sci USA 91:12393-12397
-
(1994)
Proc Natl Acad Sci USA
, vol.91
, pp. 12393-12397
-
-
Parsek, M.R.1
McFall, S.M.2
Shinabarger, D.L.3
Chakrabarty, A.M.4
-
72
-
-
15544388848
-
Noise propagation in gene networks
-
Pedraza JM, van Oudenaarden A. (2005). Noise propagation in gene networks. Science 307:1965-1969
-
(2005)
Science
, vol.307
, pp. 1965-1969
-
-
Pedraza, J.M.1
Van Oudenaarden, A.2
-
73
-
-
0030602821
-
ATP binding to the sigma 54-dependent activator XylR triggers a protein multimerization cycle catalyzed by UAS DNA
-
Pérez-Martín J, De Lorenzo V. (1996). ATP binding to the sigma 54-dependent activator XylR triggers a protein multimerization cycle catalyzed by UAS DNA. Cell 86:331-339
-
(1996)
Cell
, vol.86
, pp. 331-339
-
-
Pérez-Martín, J.1
De Lorenzo, V.2
-
74
-
-
0023443646
-
Regulatory circuits controlling transcription of TOL plasmid operon encoding meta-cleavage pathway for degradation of alkylbenzoates by Pseudomonas
-
Ramos J, Mermod N, Timmis K. (1987). Regulatory circuits controlling transcription of TOL plasmid operon encoding meta-cleavage pathway for degradation of alkylbenzoates by Pseudomonas . Mol Microbiol 1:293-300
-
(1987)
Mol Microbiol
, vol.1
, pp. 293-300
-
-
Ramos, J.1
Mermod, N.2
Timmis, K.3
-
75
-
-
0030860391
-
Transcriptional control of the pseudomonas tol plasmid catabolic operons is achieved through an interplay of host factors and plasmid-encoded regulators
-
Ramos J, Marqués S, Timmis K. (1997). Transcriptional control of the Pseudomonas TOL plasmid catabolic operons is achieved through an interplay of host factors and plasmid-encoded regulators. Annu Rev Microbiol 51:341-373
-
(1997)
Annu Rev Microbiol
, vol.51
, pp. 341-373
-
-
Ramos, J.1
Marqués, S.2
Timmis, K.3
-
76
-
-
0026014234
-
Conjugational transfer of recombinant dna in cultures and in soils: Host range of pseudomonas putida tol plasmids
-
Ramos-Gonzalez MI, Duque E, Ramos JL. (1991). Conjugational transfer of recombinant DNA in cultures and in soils: host range of Pseudomonas putida TOL plasmids. Appl Environ Microbiol 57:3020-3027
-
(1991)
Appl Environ Microbiol
, vol.57
, pp. 3020-3027
-
-
Ramos-Gonzalez, M.I.1
Duque, E.2
Ramos, J.L.3
-
77
-
-
0031751325
-
Chromosomal integration, tandem amplifi cation, and deamplifi cation in pseudomonas putida f1 of a 105-kilobase genetic element containing the chlorocatechol degradative genes from pseudomonas sp strain b13
-
Ravatn R, Studer S, Springael D, Zehnder AJ, van Der Meer JR. (1998a). Chromosomal integration, tandem amplifi cation, and deamplifi cation in Pseudomonas putida F1 of a 105-kilobase genetic element containing the chlorocatechol degradative genes from Pseudomonas sp. strain B13. J Bacteriol 180:4360-4369
-
(1998)
J Bacteriol
, vol.180
, pp. 4360-4369
-
-
Ravatn, R.1
Studer, S.2
Springael, D.3
Zehnder, A.J.4
Van Der Meer, J.R.5
-
78
-
-
0031740749
-
Int-B13, an unusual site-specific recombinase of the bacteriophage P4 integrase family, is responsible for chromosomal insertion of the 105-kilobase clc element of Pseudomonas sp. strain B13
-
Ravatn R, Studer S, Zehnder AJ, van Der Meer JR. (1998b). Int-B13, an unusual site-specific recombinase of the bacteriophage P4 integrase family, is responsible for chromosomal insertion of the 105-kilobase clc element of Pseudomonas sp. strain B13. J Bacteriol 180:5505-5514
-
(1998)
J Bacteriol
, vol.180
, pp. 5505-5514
-
-
Ravatn, R.1
Studer, S.2
Zehnder, A.J.3
Van Der Meer, J.R.4
-
79
-
-
0031745938
-
Low-frequency horizontal transfer of an element containing the chlorocatechol degradation genes from Pseudomonas sp strain b13 to pseudomonas putida f1 and to indigenous bacteria in laboratory-scale activated-sludge microcosms
-
Ravatn R, Zehnder AJ, van Der Meer JR. (1998c). Low-frequency horizontal transfer of an element containing the chlorocatechol degradation genes from Pseudomonas sp. strain B13 to Pseudomonas putida F1 and to indigenous bacteria in laboratory-scale activated-sludge microcosms. Appl Environ Microbiol 64:2126-2132
-
(1998)
Appl Environ Microbiol
, vol.64
, pp. 2126-2132
-
-
Ravatn, R.1
Zehnder, A.J.2
Van Der Meer, J.R.3
-
80
-
-
0037512322
-
Development and maturation of Escherichia coli K-12 biofilms
-
Reisner A, Haagensen JA, Schembri MA, Zechner EL, Molin S. (2003). Development and maturation of Escherichia coli K-12 biofilms. Mol Microbiol 48:933-946
-
(2003)
Mol Microbiol
, vol.48
, pp. 933-946
-
-
Reisner, A.1
Haagensen, J.A.2
Schembri, M.A.3
Zechner, E.L.4
Molin, S.5
-
81
-
-
1542319979
-
Novel physiological modulation of the pu promoter of tol plasmid: Negative regulatory role of the tura protein of pseudomonas putida in the response to suboptimal growth temperatures
-
Rescalli E, Saini S, Bartocci C, Rychlewski L, De Lorenzo V, Bertoni G. (2004). Novel physiological modulation of the Pu promoter of TOL plasmid: negative regulatory role of the TurA protein of Pseudomonas putida in the response to suboptimal growth temperatures. J Biol Chem 279:7777-7784
-
(2004)
J Biol Chem
, vol.279
, pp. 7777-7784
-
-
Rescalli, E.1
Saini, S.2
Bartocci, C.3
Rychlewski, L.4
De Lorenzo, V.5
Bertoni, G.6
-
83
-
-
0033027259
-
Complete sequence of a 184-kilobase catabolic plasmid from Sphingomonas aromaticivorans F199
-
Romine MF, Stillwell LC, Wong KK, Thurston SJ, Sisk EC, Sensen C, Gaasterland T, Fredrickson JK, Saffer JD. (1999). Complete sequence of a 184-kilobase catabolic plasmid from Sphingomonas aromaticivorans F199. J Bacteriol 181:1585-1602
-
(1999)
J Bacteriol
, vol.181
, pp. 1585-1602
-
-
Romine, M.F.1
Stillwell, L.C.2
Wong, K.K.3
Thurston, S.J.4
Sisk, E.C.5
Sensen, C.6
Gaasterland, T.7
Fredrickson, J.K.8
Saffer, J.D.9
-
84
-
-
15544371346
-
Gene regulation at the single-cell level
-
Rosenfeld N, Young JW, Alon U, Swain PS, Elowitz MB. (2005). Gene regulation at the single-cell level. Science 307:1962-1965
-
(2005)
Science
, vol.307
, pp. 1962-1965
-
-
Rosenfeld, N.1
Young, J.W.2
Alon, U.3
Swain, P.S.4
Elowitz, M.B.5
-
85
-
-
10844293485
-
Characterization of the metabolic burden on escherichia coli dh1 cells imposed by the presence of a plasmid containing a gene therapy sequence
-
Rozkov A, Avignone-Rossa CA, Ertl PF, Jones P, OKennedy RD, Smith JJ, Dale JW, Bushell ME. (2004). Characterization of the metabolic burden on Escherichia coli DH1 cells imposed by the presence of a plasmid containing a gene therapy sequence. Biotechnol Bioeng 88:909-915
-
(2004)
Biotechnol Bioeng
, vol.88
, pp. 909-915
-
-
Rozkov, A.1
Avignone-Rossa, C.A.2
Ertl, P.F.3
Jones, P.4
Okennedy, R.D.5
Smith, J.J.6
Dale, J.W.7
Bushell, M.E.8
-
86
-
-
11144261097
-
Transcriptional regulation of the toluene catabolic pathways
-
Ramos JL (ed virulence and gene regulation. Kluwer Academic/ Plenum, New York
-
Ruiz R, Aranda-Olmedo MI, Dominguez-Cuevas P, Ramos-Gonzalez MI, Marqués S. (2004). Transcriptional regulation of the toluene catabolic pathways. In: Ramos JL (ed) Pseudomonas Vol. 2 -virulence and gene regulation. Kluwer Academic/Plenum, New York
-
(2004)
Pseudomonas
, vol.2
-
-
Ruiz, R.1
Aranda-Olmedo, M.I.2
Dominguez-Cuevas, P.3
Ramos-Gonzalez, M.I.4
Marqués, S.5
-
87
-
-
72849128938
-
Novel tn 4371 -ice like element in ralstonia pickettii and genome mining for comparative elements
-
Ryan MP, Pembroke JT, Adley CC. (2009). Novel Tn 4371 -ICE like element in Ralstonia pickettii and genome mining for comparative elements. BMC Microbiol 9:242
-
(2009)
BMC Microbiol
, vol.9
, pp. 242
-
-
Ryan, M.P.1
Pembroke, J.T.2
Adley, C.C.3
-
88
-
-
0033987693
-
Effect of inoculation of a tol plasmid containing mycorrhizosphere bacterium on development of scots pine seedlings, their mycorrhizosphere and the microbial fl ora in m-toluate-amended soil
-
Sarand I, Haario H, Jørgensen KS, Romantschuk M. (2000). Effect of inoculation of a TOL plasmid containing mycorrhizosphere bacterium on development of Scots pine seedlings, their mycorrhizosphere and the microbial fl ora in m-toluate-amended soil. FEMS Microbiol Ecol 31:127-141
-
(2000)
Fems Microbiol Ecol
, vol.31
, pp. 127-141
-
-
Sarand, I.1
Haario, H.2
Jørgensen, K.S.3
Romantschuk, M.4
-
89
-
-
0024619266
-
Demonstration, characterization, and mutational analysis of NahR protein binding to nah and sal promoters
-
Schell MA, Poser EF. (1989). Demonstration, characterization, and mutational analysis of NahR protein binding to nah and sal promoters. J Bacteriol 171:837-846
-
(1989)
J Bacteriol
, vol.171
, pp. 837-846
-
-
Schell, M.A.1
Poser, E.F.2
-
90
-
-
0037338335
-
The competitiveness of pseudomonas chlororaphis carrying pjp4 is reduced in the arabidopsis thaliana rhizosphere
-
Schmidt-Eisenlohr H, Baron C. (2003). The competitiveness of Pseudomonas chlororaphis carrying pJP4 is reduced in the Arabidopsis thaliana rhizosphere. Appl Environ Microbiol 69:1827-1831
-
(2003)
Appl Environ Microbiol
, vol.69
, pp. 1827-1831
-
-
Schmidt-Eisenlohr, H.1
Baron, C.2
-
91
-
-
65949092317
-
Intracellular excision and reintegration dynamics of the ICE clc genomic island of Pseudomonas knackmussii sp strain B13
-
Sentchilo V, Czechowska K, Pradervand N, Minoia M, Miyazaki R, van Der Meer J. (2009). Intracellular excision and reintegration dynamics of the ICE clc genomic island of Pseudomonas knackmussii sp strain B13. Mol Microbiol 72:1293-1306
-
(2009)
Mol Microbiol
, vol.72
, pp. 1293-1306
-
-
Sentchilo, V.1
Czechowska, K.2
Pradervand, N.3
Minoia, M.4
Miyazaki, R.5
Van Der Meer, J.6
-
92
-
-
22644436536
-
Ability of IncP-9 plasmid pM3 to replicate in Escherichia coli is dependent on both rep and par functions
-
Sevastsyanovich Y, Titok M, Krasowiak R, Bingle L, Thomas C. (2005). Ability of IncP-9 plasmid pM3 to replicate in Escherichia coli is dependent on both rep and par functions. Mol Microbiol 57:819-833
-
(2005)
Mol Microbiol
, vol.57
, pp. 819-833
-
-
Sevastsyanovich, Y.1
Titok, M.2
Krasowiak, R.3
Bingle, L.4
Thomas, C.5
-
93
-
-
77955850385
-
Plasmid load adversely affects growth and gluconic acid secretion ability of mineral phosphate-solubilizing rhizospheric bacterium Enterobacter asburiae PSI3 under P limited conditions
-
Sharma V, Archana G, Naresh Kumar G. (2011). Plasmid load adversely affects growth and gluconic acid secretion ability of mineral phosphate-solubilizing rhizospheric bacterium Enterobacter asburiae PSI3 under P limited conditions. Microbiol Res 166:36-46
-
(2011)
Microbiol Res
, vol.166
, pp. 36-46
-
-
Sharma, V.1
Archana, G.2
Naresh Kumar, G.3
-
94
-
-
84931323365
-
Mobile genetic elements (MGEs) carrying catabolic genes
-
Malik A, Grohmann E, Alves M (eds Springer, Netherlands
-
Shintani M, Nojiri H. (2013). Mobile genetic elements (MGEs) carrying catabolic genes. In: Malik A, Grohmann E, Alves M (eds) Management of microbial resources in the environment. Springer, Netherlands
-
(2013)
Management of Microbial Resources in the Environment
-
-
Shintani, M.1
Nojiri, H.2
-
95
-
-
28444464825
-
Recipient range of incp-7 conjugative plasmid pcar2 from pseudomonas putida hs01 is broader than from other pseudomonas strains
-
Shintani M, Habe H, Tsuda M, Omori T, Yamane H, Nojiri H. (2005a). Recipient range of IncP-7 conjugative plasmid pCAR2 from Pseudomonas putida HS01 is broader than from other Pseudomonas strains. Biotechnol Lett 27:1847-1853
-
(2005)
Biotechnol Lett
, vol.27
, pp. 1847-1853
-
-
Shintani, M.1
Habe, H.2
Tsuda, M.3
Omori, T.4
Yamane, H.5
Nojiri, H.6
-
96
-
-
18844421873
-
Large plasmid pcar2 and class ii transposon tn 4676 are functional mobile genetic elements to distribute the carbazole/dioxindegradative car gene cluster in different bacteria
-
Shintani M, Yoshida T, Habe H, Omori T, Nojiri H. (2005b). Large plasmid pCAR2 and class II transposon Tn 4676 are functional mobile genetic elements to distribute the carbazole/dioxindegradative car gene cluster in different bacteria. Appl Microbiol Biotechnol 67:370-382
-
(2005)
Appl Microbiol Biotechnol
, vol.67
, pp. 370-382
-
-
Shintani, M.1
Yoshida, T.2
Habe, H.3
Omori, T.4
Nojiri, H.5
-
97
-
-
33646588646
-
Characterization of the replication, maintenance, and transfer features of the IncP-7 plasmid pCAR1, which carries genes involved in carbazole and dioxin degradation
-
Shintani M, Yano H, Habe H, Omori T, Yamane H, Tsuda M, Nojiri H. (2006). Characterization of the replication, maintenance, and transfer features of the IncP-7 plasmid pCAR1, which carries genes involved in carbazole and dioxin degradation. Appl Environ Microbiol 72:3206-3216
-
(2006)
Appl Environ Microbiol
, vol.72
, pp. 3206-3216
-
-
Shintani, M.1
Yano, H.2
Habe, H.3
Omori, T.4
Yamane, H.5
Tsuda, M.6
Nojiri, H.7
-
98
-
-
33947380626
-
The Sphingomonas plasmid pCAR3 is involved in complete mineralization of carbazole
-
Shintani M, Urata M, Inoue K, Eto K, Habe H, Omori T, Yamane H, Nojiri H. (2007). The Sphingomonas plasmid pCAR3 is involved in complete mineralization of carbazole. J Bacteriol 189:2007-2020
-
(2007)
J Bacteriol
, vol.189
, pp. 2007-2020
-
-
Shintani, M.1
Urata, M.2
Inoue, K.3
Eto, K.4
Habe, H.5
Omori, T.6
Yamane, H.7
Nojiri, H.8
-
99
-
-
36649000680
-
Conjugative transfer of the IncP-7 carbazole degradative plasmid, pCAR1, in river water samples
-
Shintani M, Fukushima N, Tezuka M, Yamane H, Nojiri H. (2008a). Conjugative transfer of the IncP-7 carbazole degradative plasmid, pCAR1, in river water samples. Biotechnol Lett 30:117-122
-
(2008)
Biotechnol Lett
, vol.30
, pp. 117-122
-
-
Shintani, M.1
Fukushima, N.2
Tezuka, M.3
Yamane, H.4
Nojiri, H.5
-
100
-
-
50249099706
-
Behavior of the IncP-7 carbazoledegradative plasmid pCAR1 in artifi cial environmental samples
-
Shintani M, Matsui K, Takemura T, Yamane H, Nojiri H. (2008b). Behavior of the IncP-7 carbazoledegradative plasmid pCAR1 in artifi cial environmental samples. Appl Microbiol Biotechnol 80:485-497
-
(2008)
Appl Microbiol Biotechnol
, vol.80
, pp. 485-497
-
-
Shintani, M.1
Matsui, K.2
Takemura, T.3
Yamane, H.4
Nojiri, H.5
-
101
-
-
77956529967
-
Response of the Pseudomonas host chromosomal transcriptome to carriage of the IncP-7 plasmid pCAR1
-
Shintani M, Takahashi Y, Tokumaru H, Kadota K, Hara H, Miyakoshi M, Naito K, Yamane H, Nishida H, Nojiri H. (2010a). Response of the Pseudomonas host chromosomal transcriptome to carriage of the IncP-7 plasmid pCAR1. Environ Microbiol 12:1413-1426
-
(2010)
Environ Microbiol
, vol.12
, pp. 1413-1426
-
-
Shintani, M.1
Takahashi, Y.2
Tokumaru, H.3
Kadota, K.4
Hara, H.5
Miyakoshi, M.6
Naito, K.7
Yamane, H.8
Nishida, H.9
Nojiri, H.10
-
102
-
-
78650037585
-
The behavior and signifi cance of degradative plasmids belonging to Inc groups in Pseudomonas within natural environments and microcosms
-
Shintani M, Takahashi Y, Yamane H, Nojiri H. (2010b). The behavior and signifi cance of degradative plasmids belonging to Inc groups in Pseudomonas within natural environments and microcosms. Microb Environ 25:253-265
-
(2010)
Microb Environ
, vol.25
, pp. 253-265
-
-
Shintani, M.1
Takahashi, Y.2
Yamane, H.3
Nojiri, H.4
-
103
-
-
77249100767
-
Behavior of various hosts of the IncP-7 carbazoledegradative plasmid pCAR1 in artifi cial microcosms
-
Shintani M, Yamane H, Nojiri H. (2010c). Behavior of various hosts of the IncP-7 carbazoledegradative plasmid pCAR1 in artifi cial microcosms. Biosci Biotechnol Biochem 74:343-349
-
(2010)
Biosci Biotechnol Biochem
, vol.74
, pp. 343-349
-
-
Shintani, M.1
Yamane, H.2
Nojiri, H.3
-
104
-
-
79961090440
-
Evolution of the IncP-7 carbazole-degradative plasmid pCAR1 improves survival of its host Pseudomonas fl uorescens Pf0-1 in artifi cial water microcosms
-
Shintani M, Horisaki T, Yamane H, Ohkuma M, Nojiri H. (2011a). Evolution of the IncP-7 carbazole-degradative plasmid pCAR1 improves survival of its host Pseudomonas fl uorescens Pf0-1 in artifi cial water microcosms. Microbiology 157:2276-2286
-
(2011)
Microbiology
, vol.157
, pp. 2276-2286
-
-
Shintani, M.1
Horisaki, T.2
Yamane, H.3
Ohkuma, M.4
Nojiri, H.5
-
105
-
-
82555175383
-
DNA rearrangement has occurred in the carbazole-degradative plasmid pCAR1 and the chromosome of its unsuitable host, Pseudomonas fl uorescens Pf0-1
-
Shintani M, Matsumoto T, Yoshikawa H, Yamane H, Ohkuma M, Nojiri H. (2011b). DNA rearrangement has occurred in the carbazole-degradative plasmid pCAR1 and the chromosome of its unsuitable host, Pseudomonas fl uorescens Pf0-1. Microbiology 157:3405-3416
-
(2011)
Microbiology
, vol.157
, pp. 3405-3416
-
-
Shintani, M.1
Matsumoto, T.2
Yoshikawa, H.3
Yamane, H.4
Ohkuma, M.5
Nojiri, H.6
-
106
-
-
80052969061
-
Alterations of RNA maps of IncP-7 plasmid pCAR1 in various Pseudomonas bacteria
-
Shintani M, Tokumaru H, Takahashi Y, Miyakoshi M, Yamane H, Nishida H, Nojiri H. (2011c). Alterations of RNA maps of IncP-7 plasmid pCAR1 in various Pseudomonas bacteria. Plasmid 66:85-92
-
(2011)
Plasmid
, vol.66
, pp. 85-92
-
-
Shintani, M.1
Tokumaru, H.2
Takahashi, Y.3
Miyakoshi, M.4
Yamane, H.5
Nishida, H.6
Nojiri, H.7
-
107
-
-
84867080098
-
Stochasticity of TOL plasmid catabolic promoters sets a bimodal expression regime in Pseudomonas putida mt-2 exposed to m -xylene
-
Silva-Rocha R, De Lorenzo V. (2012). Stochasticity of TOL plasmid catabolic promoters sets a bimodal expression regime in Pseudomonas putida mt-2 exposed to m -xylene. Mol Microbiol 86:199-211
-
(2012)
Mol Microbiol
, vol.86
, pp. 199-211
-
-
Silva-Rocha, R.1
De Lorenzo, V.2
-
108
-
-
77957976940
-
Mobility of plasmids
-
Smillie C, Garcillán-Barcia MP, Francia MV, Rocha EP, De La Cruz F. (2010). Mobility of plasmids. Microbiol Mol Biol Rev 74:434-452
-
(2010)
Microbiol Mol Biol Rev
, vol.74
, pp. 434-452
-
-
Smillie, C.1
Garcillán-Barcia, M.P.2
Francia, M.V.3
Rocha, E.P.4
De La Cruz, F.5
-
109
-
-
72949124443
-
Horizontal gene transfer mediated by plasmids
-
Lipps G (ed Horizon Scientifi c Norfolk
-
Sota M, Top EM. (2008). Horizontal gene transfer mediated by plasmids. In: Lipps G (ed) Plasmids: current research and future trends. Horizon Scientifi c, Norfolk
-
(2008)
Plasmids: Current Research And Future Trends
-
-
Sota, M.1
Top, E.M.2
-
110
-
-
33744718828
-
Genomic and functional analysis of the incp-9 naphthalene-catabolic plasmid nah7 and its transposon tn 4655 suggests catabolic gene spread by a tyrosine recombinase
-
Sota M, Yano H, Ono A, Miyazaki R, Ishii H, Genka H, Top E, Tsuda M. (2006). Genomic and functional analysis of the IncP-9 naphthalene-catabolic plasmid NAH7 and its transposon Tn 4655 suggests catabolic gene spread by a tyrosine recombinase. J Bacteriol 188:4057-4067
-
(2006)
J Bacteriol
, vol.188
, pp. 4057-4067
-
-
Sota, M.1
Yano, H.2
Ono, A.3
Miyazaki, R.4
Ishii, H.5
Genka, H.6
Top, E.7
Tsuda, M.8
-
111
-
-
78649446843
-
Shifts in the host range of a promiscuous plasmid through parallel evolution of its replication initiation protein
-
Sota M, Yano H, Hughes JM, Daughdrill GW, Abdo Z, Forney LJ, Top EM. (2010). Shifts in the host range of a promiscuous plasmid through parallel evolution of its replication initiation protein. ISME J 4:1568-1580
-
(2010)
ISME J
, vol.4
, pp. 1568-1580
-
-
Sota, M.1
Yano, H.2
Hughes, J.M.3
Daughdrill, G.W.4
Abdo, Z.5
Forney, L.J.6
Top, E.M.7
-
112
-
-
67149128137
-
Carbazole-degradative incp-7 plasmid pcar1.2 is dtructurally unstable in pseudomonas fl uorescens pf0-1, which accumulates catechol, the intermediate of the carbazole degradation pathway
-
Takahashi Y, Shintani M, Li L, Yamane H, Nojiri H. (2009a). Carbazole-degradative IncP-7 plasmid pCAR1.2 is dtructurally unstable in Pseudomonas fl uorescens Pf0-1, which accumulates catechol, the intermediate of the carbazole degradation pathway. Appl Environ Microbiol 75:3920-3929
-
(2009)
Appl Environ Microbiol
, vol.75
, pp. 3920-3929
-
-
Takahashi, Y.1
Shintani, M.2
Li, L.3
Yamane, H.4
Nojiri, H.5
-
113
-
-
65349135881
-
The complete nucleotide sequence of pcar2: Pcar2 and pcar1 were structurally identical incp-7 carbazole degradative plasmids
-
Takahashi Y, Shintani M, Yamane H, Nojiri H. (2009b). The complete nucleotide sequence of pCAR2: pCAR2 and pCAR1 were structurally identical IncP-7 carbazole degradative plasmids. Biosci Biotechnol Biochem 73:744-746
-
(2009)
Biosci Biotechnol Biochem
, vol.73
, pp. 744-746
-
-
Takahashi, Y.1
Shintani, M.2
Yamane, H.3
Nojiri, H.4
-
114
-
-
79955810405
-
Distribution of genes encoding nucleoid-associated protein homologs in plasmids
-
Takeda T, Yun CS, Shintani M, Yamane H, Nojiri H. (2011). Distribution of genes encoding nucleoid-associated protein homologs in plasmids. Int J Evol Biol 2011:685015
-
(2011)
Int J Evol Biol
, vol.2011
, pp. 685015
-
-
Takeda, T.1
Yun, C.S.2
Shintani, M.3
Yamane, H.4
Nojiri, H.5
-
115
-
-
32644485706
-
Plasmids of the genus Pseudomonas
-
Ramos J-L (ed Kluwer Academic/Plenum Publishers, New York
-
Thomas CM, Haines AS. (2004). Plasmids of the genus Pseudomonas . In: Ramos J-L (ed) Pseudomonas . Kluwer Academic/Plenum Publishers, New York
-
(2004)
Pseudomonas
-
-
Thomas, C.M.1
Haines, A.S.2
-
116
-
-
0038018390
-
The biphenyl-and 4-chlorobiphenyl-catabolic transposon tn 4371, a member of a new family of genomic islands related to incp and ti plasmids
-
Toussaint A, Merlin C, Monchy S, Benotmane MA, Leplae R, Mergeay M, Springael D. (2003). The biphenyl-and 4-chlorobiphenyl-catabolic transposon Tn 4371, a member of a new family of genomic islands related to IncP and Ti plasmids. Appl Environ Microbiol 69:4837-4845
-
(2003)
Appl Environ Microbiol
, vol.69
, pp. 4837-4845
-
-
Toussaint, A.1
Merlin, C.2
Monchy, S.3
Benotmane, M.A.4
Leplae, R.5
Mergeay, M.6
Springael, D.7
-
117
-
-
0023504678
-
Genetic analysis of a transposon carrying toluene degrading genes on a TOL plasmid pWW0
-
Tsuda M, Iino T. (1987). Genetic analysis of a transposon carrying toluene degrading genes on a TOL plasmid pWW0. Mol Gen Genet 210:270-276
-
(1987)
Mol Gen Genet
, vol.210
, pp. 270-276
-
-
Tsuda, M.1
Iino, T.2
-
118
-
-
0024046404
-
Identification and characterization of Tn 4653, a transposon covering the toluene transposon Tn 4651 on TOL plasmid pWW0
-
Tsuda M, Iino T. (1988). Identification and characterization of Tn 4653, a transposon covering the toluene transposon Tn 4651 on TOL plasmid pWW0. Mol Gen Genet 213:72-77
-
(1988)
Mol Gen Genet
, vol.213
, pp. 72-77
-
-
Tsuda, M.1
Iino, T.2
-
119
-
-
0025073507
-
Naphthalene degrading genes on plasmid NAH7 are on a defective transposon
-
Tsuda M, Iino T. (1990). Naphthalene degrading genes on plasmid NAH7 are on a defective transposon. Mol Gen Genet 223:33-39
-
(1990)
Mol Gen Genet
, vol.223
, pp. 33-39
-
-
Tsuda, M.1
Iino, T.2
-
120
-
-
0024574036
-
Toluene transposons Tn 4651 and Tn 4653 are class II transposons
-
Tsuda M, Minegishi K, Iino T. (1989). Toluene transposons Tn 4651 and Tn 4653 are class II transposons. J Bacteriol 171:1386-1393
-
(1989)
J Bacteriol
, vol.171
, pp. 1386-1393
-
-
Tsuda, M.1
Minegishi, K.2
Iino, T.3
-
121
-
-
34248189594
-
The environmental plasmid pqbr103 alters the single-cell raman spectral profi le of pseudomonas fl uorescens sbw25
-
Ude S, Bailey MJ, Huang WE, Spiers AJ. (2007). The environmental plasmid pQBR103 alters the single-cell Raman spectral profi le of Pseudomonas fl uorescens SBW25. Microb Ecol 53:494-497
-
(2007)
Microb Ecol
, vol.53
, pp. 494-497
-
-
Ude, S.1
Bailey, M.J.2
Huang, W.E.3
Spiers, A.J.4
-
122
-
-
4944257147
-
Transcriptional regulation of the ant operon, encoding two-component anthranilate 1,2-dioxygenase, on the carbazole-degradative plasmid pcar1 of pseudomonas resinovorans strain ca10
-
Urata M, Miyakoshi M, Kai S, Maeda K, Habe H, Omori T, Yamane H, Nojiri H. (2004). Transcriptional regulation of the ant operon, encoding two-component anthranilate 1,2-dioxygenase, on the carbazole-degradative plasmid pCAR1 of Pseudomonas resinovorans strain CA10. J Bacteriol 186:6815-6823
-
(2004)
J Bacteriol
, vol.186
, pp. 6815-6823
-
-
Urata, M.1
Miyakoshi, M.2
Kai, S.3
Maeda, K.4
Habe, H.5
Omori, T.6
Yamane, H.7
Nojiri, H.8
-
123
-
-
47049120518
-
Transcriptional wiring of the TOL plasmid regulatory network to its host involves the submission of the sigma54-promoter Pu to the response regulator PprA
-
Vitale E, Milani A, Renzi F, Galli E, Rescalli E, De Lorenzo V, Bertoni G. (2008). Transcriptional wiring of the TOL plasmid regulatory network to its host involves the submission of the sigma54-promoter Pu to the response regulator PprA. Mol Microbiol 69:698-713
-
(2008)
Mol Microbiol
, vol.69
, pp. 698-713
-
-
Vitale, E.1
Milani, A.2
Renzi, F.3
Galli, E.4
Rescalli, E.5
De Lorenzo, V.6
Bertoni, G.7
-
124
-
-
33845315054
-
Effects of the presence of ColE1 plasmid DNA in Escherichia coli on the host cell metabolism
-
Wang Z, Xiang L, Shao J, Wegrzyn A, Wegrzyn G. (2006). Effects of the presence of ColE1 plasmid DNA in Escherichia coli on the host cell metabolism. Microb Cell Fact 5:34
-
(2006)
Microb Cell Fact
, vol.5
, pp. 34
-
-
Wang, Z.1
Xiang, L.2
Shao, J.3
Wegrzyn, A.4
Wegrzyn, G.5
-
125
-
-
0023809060
-
Loss of the toluene-xylene catabolic genes of tol plasmid pww0 during growth of pseudomonas putida on benzoate is due to a selective growth advantage of cured segregants
-
Williams P, Taylor S, Gibb L. (1988). Loss of the toluene-xylene catabolic genes of TOL plasmid pWW0 during growth of Pseudomonas putida on benzoate is due to a selective growth advantage of cured segregants. J Gen Microbiol 134:2039-2048
-
(1988)
J Gen Microbiol
, vol.134
, pp. 2039-2048
-
-
Williams, P.1
Taylor, S.2
Gibb, L.3
-
126
-
-
77954761569
-
Integrative and conjugative elements: Mosaic mobile genetic elements enabling dynamic lateral gene flow
-
Wozniak RA, Waldor MK. (2010). Integrative and conjugative elements: mosaic mobile genetic elements enabling dynamic lateral gene flow. Nat Rev Microbiol 8:552-563
-
(2010)
Nat Rev Microbiol
, vol.8
, pp. 552-563
-
-
Wozniak, R.A.1
Waldor, M.K.2
-
127
-
-
43049144591
-
The R1 conjugative plasmid increases Escherichia coli biofilm formation through an envelope stress response
-
Yang X, Ma Q, Wood TK. (2008). The R1 conjugative plasmid increases Escherichia coli biofilm formation through an envelope stress response. Appl Environ Microbiol 74:2690-2699
-
(2008)
Appl Environ Microbiol
, vol.74
, pp. 2690-2699
-
-
Yang, X.1
Ma, Q.2
Wood, T.K.3
-
128
-
-
0023705037
-
Genetics of naphthalene catabolism in pseudomonads
-
Yen K, Serdar C. (1988). Genetics of naphthalene catabolism in pseudomonads. Crit Rev Microbiol 15:247-268
-
(1988)
Crit Rev Microbiol
, vol.15
, pp. 247-268
-
-
Yen, K.1
Serdar, C.2
-
129
-
-
77956525898
-
Pmr, a histonelike protein h1 (h-ns) family protein encoded by the incp-7 plasmid pcar1, is a key global regulator that alters host function
-
Yun C-S, Suzuki C, Naito K, Takeda T, Takahashi Y, Sai F, Terabayashi T, Miyakoshi M, Shintani M, Nishida H, Yamane H, Nojiri H. (2010). Pmr, a Histonelike protein H1 (H-NS) family protein encoded by the IncP-7 plasmid pCAR1, is a key global regulator that alters host function. J Bacteriol 192:4720-4731
-
(2010)
J Bacteriol
, vol.192
, pp. 4720-4731
-
-
Yun, C.-S.1
Suzuki, C.2
Naito, K.3
Takeda, T.4
Takahashi, Y.5
Sai, F.6
Terabayashi, T.7
Miyakoshi, M.8
Shintani, M.9
Nishida, H.10
Yamane, H.11
Nojiri, H.12
-
130
-
-
0018881923
-
Generation time-prolonging R plasmids: Correlation between increases in the generation time of Escherichia coli caused by R plasmids and their molecular size
-
Zünd P, Lebek G. (1980). Generation time-prolonging R plasmids: correlation between increases in the generation time of Escherichia coli caused by R plasmids and their molecular size. Plasmid 3:65-69
-
(1980)
Plasmid
, vol.3
, pp. 65-69
-
-
Zünd, P.1
Lebek, G.2
|