-
1
-
-
85158006363
-
The movement of Tn3-like elements: transposition and cointegrate resolution
-
ASM Press, Washington, DC, L.N.R. Craig, R. Craigie, M. Gellert, A.M. Lambowitz (Eds.)
-
Grindley N.D.F. The movement of Tn3-like elements: transposition and cointegrate resolution. Mobile DNA II 2002, 272-302. ASM Press, Washington, DC. L.N.R. Craig, R. Craigie, M. Gellert, A.M. Lambowitz (Eds.).
-
(2002)
Mobile DNA II
, pp. 272-302
-
-
Grindley, N.D.F.1
-
2
-
-
0032464363
-
Expression of the transposase gene tnpA of Tn4652 is positively affected by integration host factor
-
Hõrak R., Kivisaar M. Expression of the transposase gene tnpA of Tn4652 is positively affected by integration host factor. J. Bacteriol. 1998, 180:2822-2829.
-
(1998)
J. Bacteriol.
, vol.180
, pp. 2822-2829
-
-
Hõrak, R.1
Kivisaar, M.2
-
3
-
-
0345062344
-
Regulation of the transposase of Tn4652 by the transposon-encoded protein TnpC
-
Hõrak R., Kivisaar M. Regulation of the transposase of Tn4652 by the transposon-encoded protein TnpC. J. Bacteriol. 1999, 181:6312-6318.
-
(1999)
J. Bacteriol.
, vol.181
, pp. 6312-6318
-
-
Hõrak, R.1
Kivisaar, M.2
-
4
-
-
3042837371
-
Complete nucleotide sequence and organization of the naphthalene catabolic plasmid pND6-1 from Pseudomonas sp. strain ND6
-
Li W., Shi J., Wang X., Han Y., Tong W., Ma L., Liu B., Cai B. Complete nucleotide sequence and organization of the naphthalene catabolic plasmid pND6-1 from Pseudomonas sp. strain ND6. Gene 2004, 336:231-240.
-
(2004)
Gene
, vol.336
, pp. 231-240
-
-
Li, W.1
Shi, J.2
Wang, X.3
Han, Y.4
Tong, W.5
Ma, L.6
Liu, B.7
Cai, B.8
-
5
-
-
0037423746
-
Complete nucleotide sequence of carbazole/dioxin-degrading plasmid pCAR1 in Pseudomonas resinovorans strain CA10 indicates its mosaicity and the presence of large catabolic transposon Tn4676
-
Maeda K., Nojiri H., Shintani M., Yoshida T., Habe H., Omori T. Complete nucleotide sequence of carbazole/dioxin-degrading plasmid pCAR1 in Pseudomonas resinovorans strain CA10 indicates its mosaicity and the presence of large catabolic transposon Tn4676. J. Mol. Biol. 2003, 326:21-33.
-
(2003)
J. Mol. Biol.
, vol.326
, pp. 21-33
-
-
Maeda, K.1
Nojiri, H.2
Shintani, M.3
Yoshida, T.4
Habe, H.5
Omori, T.6
-
6
-
-
33646587183
-
Differentiation of carbazole catabolic operons by replacement of the regulated promoter via transposition of an insertion sequence
-
Miyakoshi M., Urata M., Habe H., Omori T., Yamane H., Nojiri H. Differentiation of carbazole catabolic operons by replacement of the regulated promoter via transposition of an insertion sequence. J. Biol. Chem. 2006, 281:8450-8457.
-
(2006)
J. Biol. Chem.
, vol.281
, pp. 8450-8457
-
-
Miyakoshi, M.1
Urata, M.2
Habe, H.3
Omori, T.4
Yamane, H.5
Nojiri, H.6
-
7
-
-
34948813038
-
Transcriptome analysis of Pseudomonas putida KT2440 harboring the completely sequenced IncP-7 plasmid pCAR1
-
Miyakoshi M., Shintani M., Terabayashi T., Kai S., Yamane H., Nojiri H. Transcriptome analysis of Pseudomonas putida KT2440 harboring the completely sequenced IncP-7 plasmid pCAR1. J. Bacteriol. 2007, 189:6849-6860.
-
(2007)
J. Bacteriol.
, vol.189
, pp. 6849-6860
-
-
Miyakoshi, M.1
Shintani, M.2
Terabayashi, T.3
Kai, S.4
Yamane, H.5
Nojiri, H.6
-
8
-
-
60549092956
-
High-resolution mapping of plasmid transcriptomes in different host bacteria
-
Miyakoshi M., Nishida H., Shintani M., Yamane H., Nojiri H. High-resolution mapping of plasmid transcriptomes in different host bacteria. BMC Genomics 2009, 10:12.
-
(2009)
BMC Genomics
, vol.10
, pp. 12
-
-
Miyakoshi, M.1
Nishida, H.2
Shintani, M.3
Yamane, H.4
Nojiri, H.5
-
9
-
-
0034981075
-
Genetic characterization and evolutionary implications of a car gene cluster in the carbazole degrader Pseudomonas sp. strain CA10
-
Nojiri H., Sekiguchi H., Maeda K., Urata M., Nakai S., Yoshida T., Habe H., Omori T. Genetic characterization and evolutionary implications of a car gene cluster in the carbazole degrader Pseudomonas sp. strain CA10. J. Bacteriol. 2001, 183:3663-3679.
-
(2001)
J. Bacteriol.
, vol.183
, pp. 3663-3679
-
-
Nojiri, H.1
Sekiguchi, H.2
Maeda, K.3
Urata, M.4
Nakai, S.5
Yoshida, T.6
Habe, H.7
Omori, T.8
-
10
-
-
73449088005
-
Identification of genes regulated by the MvaT-like paralogues TurA and TurB of Pseudomonas putida KT2440
-
Renzi F., Rescalli E., Galli E., Bertoni G. Identification of genes regulated by the MvaT-like paralogues TurA and TurB of Pseudomonas putida KT2440. Environ. Microbiol. 2010, 12:254-263.
-
(2010)
Environ. Microbiol.
, vol.12
, pp. 254-263
-
-
Renzi, F.1
Rescalli, E.2
Galli, E.3
Bertoni, G.4
-
12
-
-
28444464825
-
Recipient range of IncP-7 conjugative plasmid pCAR2 from Pseudomonas putida HS01 is broader than from other Pseudomonas strains
-
Shintani M., Habe H., Tsuda M., Omori T., Yamane H., Nojiri H. Recipient range of IncP-7 conjugative plasmid pCAR2 from Pseudomonas putida HS01 is broader than from other Pseudomonas strains. Biotechnol. Lett. 2005, 27:1847-1853.
-
(2005)
Biotechnol. Lett.
, vol.27
, pp. 1847-1853
-
-
Shintani, M.1
Habe, H.2
Tsuda, M.3
Omori, T.4
Yamane, H.5
Nojiri, H.6
-
13
-
-
79961090440
-
Evolution of the IncP-7 carbazole-degradative plasmid pCAR1 improves survival of its host Pseudomonas fluorescens Pf0-1 in artificial water microcosm
-
doi:10.1099/mic.0.049064-0
-
Shintani, M., Horisaki, T., Yamane, H., Ohkuma, M., Nojiri, H., in press. Evolution of the IncP-7 carbazole-degradative plasmid pCAR1 improves survival of its host Pseudomonas fluorescens Pf0-1 in artificial water microcosm. Microbiology. doi: doi:10.1099/mic.0.049064-0.
-
Microbiology
-
-
Shintani, M.1
Horisaki, T.2
Yamane, H.3
Ohkuma, M.4
Nojiri, H.5
-
14
-
-
18844421873
-
Large plasmid pCAR2 and class II transposon Tn4676 are functional mobile genetic elements to distribute the carbazole/dioxin-degradative car gene cluster in different bacteria
-
Shintani M., Yoshida T., Habe H., Omori T., Nojiri H. Large plasmid pCAR2 and class II transposon Tn4676 are functional mobile genetic elements to distribute the carbazole/dioxin-degradative car gene cluster in different bacteria. Appl. Microbiol. Biotechnol. 2005, 67:370-382.
-
(2005)
Appl. Microbiol. Biotechnol.
, vol.67
, pp. 370-382
-
-
Shintani, M.1
Yoshida, T.2
Habe, H.3
Omori, T.4
Nojiri, H.5
-
15
-
-
33646588646
-
Characterization of the replication, maintenance, and transfer features of the IncP-7 plasmid pCAR1, which carries genes involved in carbazole and dioxin degradation
-
Shintani M., Yano H., Habe H., Omori T., Yamane H., Tsuda M., Nojiri H. Characterization of the replication, maintenance, and transfer features of the IncP-7 plasmid pCAR1, which carries genes involved in carbazole and dioxin degradation. Appl. Environ. Microbiol. 2006, 72:3206-3216.
-
(2006)
Appl. Environ. Microbiol.
, vol.72
, pp. 3206-3216
-
-
Shintani, M.1
Yano, H.2
Habe, H.3
Omori, T.4
Yamane, H.5
Tsuda, M.6
Nojiri, H.7
-
16
-
-
36649000680
-
Conjugative transfer of the IncP-7 carbazole degradative plasmid, pCAR1, in river water samples
-
Shintani M., Fukushima N., Tezuka M., Yamane H., Nojiri H. Conjugative transfer of the IncP-7 carbazole degradative plasmid, pCAR1, in river water samples. Biotechnol. Lett. 2008, 30:117-122.
-
(2008)
Biotechnol. Lett.
, vol.30
, pp. 117-122
-
-
Shintani, M.1
Fukushima, N.2
Tezuka, M.3
Yamane, H.4
Nojiri, H.5
-
17
-
-
50249099706
-
Behavior of the IncP-7 carbazole-degradative plasmid pCAR1 in artificial environmental samples
-
Shintani M., Matsui K., Takemura T., Yamane H., Nojiri H. Behavior of the IncP-7 carbazole-degradative plasmid pCAR1 in artificial environmental samples. Appl. Microbiol. Biotechnol. 2008, 80:485-497.
-
(2008)
Appl. Microbiol. Biotechnol.
, vol.80
, pp. 485-497
-
-
Shintani, M.1
Matsui, K.2
Takemura, T.3
Yamane, H.4
Nojiri, H.5
-
18
-
-
77956529967
-
Response of the Pseudomonas host chromosomal transcriptome to carriage of the IncP-7 plasmid pCAR1
-
Shintani M., Takahashi Y., Tokumaru H., Kadota K., Hara H., Miyakoshi M., Naito K., Yamane H., Nishida H., Nojiri H. Response of the Pseudomonas host chromosomal transcriptome to carriage of the IncP-7 plasmid pCAR1. Environ. Microbiol. 2010, 12:1413-1426.
-
(2010)
Environ. Microbiol.
, vol.12
, pp. 1413-1426
-
-
Shintani, M.1
Takahashi, Y.2
Tokumaru, H.3
Kadota, K.4
Hara, H.5
Miyakoshi, M.6
Naito, K.7
Yamane, H.8
Nishida, H.9
Nojiri, H.10
-
19
-
-
77249100767
-
Behavior of various hosts of the IncP-7 carbazole-degradative plasmid pCAR1 in artificial microcosms
-
Shintani M., Yamane H., Nojiri H. Behavior of various hosts of the IncP-7 carbazole-degradative plasmid pCAR1 in artificial microcosms. Biosci. Biotechnol. Biochem. 2010, 74:343-349.
-
(2010)
Biosci. Biotechnol. Biochem.
, vol.74
, pp. 343-349
-
-
Shintani, M.1
Yamane, H.2
Nojiri, H.3
-
20
-
-
78650037585
-
The behavior and significance of degradative plasmids belonging to Inc groups in Pseudomonas within natural environments and microcosms
-
Shintani M., Takahashi Y., Yamane H., Nojiri H. The behavior and significance of degradative plasmids belonging to Inc groups in Pseudomonas within natural environments and microcosms. Microb. Environ. 2010, 25:253-265.
-
(2010)
Microb. Environ.
, vol.25
, pp. 253-265
-
-
Shintani, M.1
Takahashi, Y.2
Yamane, H.3
Nojiri, H.4
-
21
-
-
79955800372
-
Oligomerization and DNA-binding capacity of Pmr, a histone-like protein H1 (H-NS) family protein encoded on IncP-7 carbazole-degradative plasmid pCAR1
-
Suzuki C., Yun C.S., Umeda T., Terabayashi T., Watanabe K., Yamane H., Nojiri H. Oligomerization and DNA-binding capacity of Pmr, a histone-like protein H1 (H-NS) family protein encoded on IncP-7 carbazole-degradative plasmid pCAR1. Biosci. Biotechnol. Biochem. 2011, 75:711-717.
-
(2011)
Biosci. Biotechnol. Biochem.
, vol.75
, pp. 711-717
-
-
Suzuki, C.1
Yun, C.S.2
Umeda, T.3
Terabayashi, T.4
Watanabe, K.5
Yamane, H.6
Nojiri, H.7
-
22
-
-
67149128137
-
Carbazole-degradative IncP-7 plasmid pCAR1.2 is structurally unstable in Pseudomonas fluorescens Pf0-1, which accumulates catechol, the intermediate of the carbazole degradation pathway
-
Takahashi Y., Shintani M., Li L., Yamane H., Nojiri H. Carbazole-degradative IncP-7 plasmid pCAR1.2 is structurally unstable in Pseudomonas fluorescens Pf0-1, which accumulates catechol, the intermediate of the carbazole degradation pathway. Appl. Environ. Microbiol. 2009, 75:3920-3929.
-
(2009)
Appl. Environ. Microbiol.
, vol.75
, pp. 3920-3929
-
-
Takahashi, Y.1
Shintani, M.2
Li, L.3
Yamane, H.4
Nojiri, H.5
-
23
-
-
65349135881
-
The complete nucleotide sequence of pCAR2: pCAR2 and pCAR1 were structurally identical IncP-7 carbazole degradative plasmids
-
Takahashi Y., Shintani M., Yamane H., Nojiri H. The complete nucleotide sequence of pCAR2: pCAR2 and pCAR1 were structurally identical IncP-7 carbazole degradative plasmids. Biosci. Biotechnol. Biochem. 2009, 73:744-746.
-
(2009)
Biosci. Biotechnol. Biochem.
, vol.73
, pp. 744-746
-
-
Takahashi, Y.1
Shintani, M.2
Yamane, H.3
Nojiri, H.4
-
24
-
-
0023504678
-
Genetic analysis of a transposon carrying toluene degrading genes on a TOL plasmid pWW0
-
Tsuda M., Iino T. Genetic analysis of a transposon carrying toluene degrading genes on a TOL plasmid pWW0. Mol. Gen. Genet. 1987, 210:270-276.
-
(1987)
Mol. Gen. Genet.
, vol.210
, pp. 270-276
-
-
Tsuda, M.1
Iino, T.2
-
25
-
-
4944257147
-
Transcriptional regulation of the ant operon, encoding two-component anthranilate 1,2-dioxygenase, on the carbazole-degradative plasmid pCAR1 of Pseudomonas resinovorans strain CA10
-
Urata M., Miyakoshi M., Kai S., Maeda K., Habe H., Omori T., Yamane H., Nojiri H. Transcriptional regulation of the ant operon, encoding two-component anthranilate 1,2-dioxygenase, on the carbazole-degradative plasmid pCAR1 of Pseudomonas resinovorans strain CA10. J. Bacteriol. 2004, 186:6815-6823.
-
(2004)
J. Bacteriol.
, vol.186
, pp. 6815-6823
-
-
Urata, M.1
Miyakoshi, M.2
Kai, S.3
Maeda, K.4
Habe, H.5
Omori, T.6
Yamane, H.7
Nojiri, H.8
-
26
-
-
34247358195
-
Complete sequence determination combined with analysis of transposition/site-specific recombination events to explain genetic organization of IncP-7 TOL plasmid pWW53 and related mobile genetic elements
-
Yano H., Garruto C., Sota M., Ohtsubo Y., Nagata Y., Zylstra G., Williams P., Tsuda M. Complete sequence determination combined with analysis of transposition/site-specific recombination events to explain genetic organization of IncP-7 TOL plasmid pWW53 and related mobile genetic elements. J. Mol. Biol. 2007, 369:11-26.
-
(2007)
J. Mol. Biol.
, vol.369
, pp. 11-26
-
-
Yano, H.1
Garruto, C.2
Sota, M.3
Ohtsubo, Y.4
Nagata, Y.5
Zylstra, G.6
Williams, P.7
Tsuda, M.8
-
27
-
-
77956548642
-
Complete nucleotide sequence of TOL plasmid pDK1 provides evidence for evolutionary history of IncP-7 catabolic plasmids
-
Yano H., Miyakoshi M., Ohshima K., Tabata M., Nagata Y., Hattori M., Tsuda M. Complete nucleotide sequence of TOL plasmid pDK1 provides evidence for evolutionary history of IncP-7 catabolic plasmids. J. Bacteriol. 2010, 192:4337-4347.
-
(2010)
J. Bacteriol.
, vol.192
, pp. 4337-4347
-
-
Yano, H.1
Miyakoshi, M.2
Ohshima, K.3
Tabata, M.4
Nagata, Y.5
Hattori, M.6
Tsuda, M.7
-
28
-
-
77956525898
-
Pmr, a histone-like protein H1 (H-NS) family protein encoded by the IncP-7 plasmid pCAR1, is a key global regulator that alters host function
-
Yun C.S., Suzuki C., Naito K., Takeda T., Takahashi Y., Sai F., Terabayashi T., Miyakoshi M., Shintani M., Nishida H., Yamane H., Nojiri H. Pmr, a histone-like protein H1 (H-NS) family protein encoded by the IncP-7 plasmid pCAR1, is a key global regulator that alters host function. J. Bacteriol. 2010, 192:4720-4731.
-
(2010)
J. Bacteriol.
, vol.192
, pp. 4720-4731
-
-
Yun, C.S.1
Suzuki, C.2
Naito, K.3
Takeda, T.4
Takahashi, Y.5
Sai, F.6
Terabayashi, T.7
Miyakoshi, M.8
Shintani, M.9
Nishida, H.10
Yamane, H.11
Nojiri, H.12
|