메뉴 건너뛰기




Volumn 66, Issue 2, 2011, Pages 85-92

Alterations of RNA maps of IncP-7 plasmid pCAR1 in various Pseudomonas bacteria

Author keywords

IncP 7 plasmid; Pseudomonas; RNA mapping; Transcriptome

Indexed keywords

BACTERIAL RNA;

EID: 80052969061     PISSN: 0147619X     EISSN: 10959890     Source Type: Journal    
DOI: 10.1016/j.plasmid.2011.06.001     Document Type: Article
Times cited : (15)

References (28)
  • 1
    • 85158006363 scopus 로고    scopus 로고
    • The movement of Tn3-like elements: transposition and cointegrate resolution
    • ASM Press, Washington, DC, L.N.R. Craig, R. Craigie, M. Gellert, A.M. Lambowitz (Eds.)
    • Grindley N.D.F. The movement of Tn3-like elements: transposition and cointegrate resolution. Mobile DNA II 2002, 272-302. ASM Press, Washington, DC. L.N.R. Craig, R. Craigie, M. Gellert, A.M. Lambowitz (Eds.).
    • (2002) Mobile DNA II , pp. 272-302
    • Grindley, N.D.F.1
  • 2
    • 0032464363 scopus 로고    scopus 로고
    • Expression of the transposase gene tnpA of Tn4652 is positively affected by integration host factor
    • Hõrak R., Kivisaar M. Expression of the transposase gene tnpA of Tn4652 is positively affected by integration host factor. J. Bacteriol. 1998, 180:2822-2829.
    • (1998) J. Bacteriol. , vol.180 , pp. 2822-2829
    • Hõrak, R.1    Kivisaar, M.2
  • 3
    • 0345062344 scopus 로고    scopus 로고
    • Regulation of the transposase of Tn4652 by the transposon-encoded protein TnpC
    • Hõrak R., Kivisaar M. Regulation of the transposase of Tn4652 by the transposon-encoded protein TnpC. J. Bacteriol. 1999, 181:6312-6318.
    • (1999) J. Bacteriol. , vol.181 , pp. 6312-6318
    • Hõrak, R.1    Kivisaar, M.2
  • 4
    • 3042837371 scopus 로고    scopus 로고
    • Complete nucleotide sequence and organization of the naphthalene catabolic plasmid pND6-1 from Pseudomonas sp. strain ND6
    • Li W., Shi J., Wang X., Han Y., Tong W., Ma L., Liu B., Cai B. Complete nucleotide sequence and organization of the naphthalene catabolic plasmid pND6-1 from Pseudomonas sp. strain ND6. Gene 2004, 336:231-240.
    • (2004) Gene , vol.336 , pp. 231-240
    • Li, W.1    Shi, J.2    Wang, X.3    Han, Y.4    Tong, W.5    Ma, L.6    Liu, B.7    Cai, B.8
  • 5
    • 0037423746 scopus 로고    scopus 로고
    • Complete nucleotide sequence of carbazole/dioxin-degrading plasmid pCAR1 in Pseudomonas resinovorans strain CA10 indicates its mosaicity and the presence of large catabolic transposon Tn4676
    • Maeda K., Nojiri H., Shintani M., Yoshida T., Habe H., Omori T. Complete nucleotide sequence of carbazole/dioxin-degrading plasmid pCAR1 in Pseudomonas resinovorans strain CA10 indicates its mosaicity and the presence of large catabolic transposon Tn4676. J. Mol. Biol. 2003, 326:21-33.
    • (2003) J. Mol. Biol. , vol.326 , pp. 21-33
    • Maeda, K.1    Nojiri, H.2    Shintani, M.3    Yoshida, T.4    Habe, H.5    Omori, T.6
  • 6
    • 33646587183 scopus 로고    scopus 로고
    • Differentiation of carbazole catabolic operons by replacement of the regulated promoter via transposition of an insertion sequence
    • Miyakoshi M., Urata M., Habe H., Omori T., Yamane H., Nojiri H. Differentiation of carbazole catabolic operons by replacement of the regulated promoter via transposition of an insertion sequence. J. Biol. Chem. 2006, 281:8450-8457.
    • (2006) J. Biol. Chem. , vol.281 , pp. 8450-8457
    • Miyakoshi, M.1    Urata, M.2    Habe, H.3    Omori, T.4    Yamane, H.5    Nojiri, H.6
  • 7
    • 34948813038 scopus 로고    scopus 로고
    • Transcriptome analysis of Pseudomonas putida KT2440 harboring the completely sequenced IncP-7 plasmid pCAR1
    • Miyakoshi M., Shintani M., Terabayashi T., Kai S., Yamane H., Nojiri H. Transcriptome analysis of Pseudomonas putida KT2440 harboring the completely sequenced IncP-7 plasmid pCAR1. J. Bacteriol. 2007, 189:6849-6860.
    • (2007) J. Bacteriol. , vol.189 , pp. 6849-6860
    • Miyakoshi, M.1    Shintani, M.2    Terabayashi, T.3    Kai, S.4    Yamane, H.5    Nojiri, H.6
  • 8
    • 60549092956 scopus 로고    scopus 로고
    • High-resolution mapping of plasmid transcriptomes in different host bacteria
    • Miyakoshi M., Nishida H., Shintani M., Yamane H., Nojiri H. High-resolution mapping of plasmid transcriptomes in different host bacteria. BMC Genomics 2009, 10:12.
    • (2009) BMC Genomics , vol.10 , pp. 12
    • Miyakoshi, M.1    Nishida, H.2    Shintani, M.3    Yamane, H.4    Nojiri, H.5
  • 9
    • 0034981075 scopus 로고    scopus 로고
    • Genetic characterization and evolutionary implications of a car gene cluster in the carbazole degrader Pseudomonas sp. strain CA10
    • Nojiri H., Sekiguchi H., Maeda K., Urata M., Nakai S., Yoshida T., Habe H., Omori T. Genetic characterization and evolutionary implications of a car gene cluster in the carbazole degrader Pseudomonas sp. strain CA10. J. Bacteriol. 2001, 183:3663-3679.
    • (2001) J. Bacteriol. , vol.183 , pp. 3663-3679
    • Nojiri, H.1    Sekiguchi, H.2    Maeda, K.3    Urata, M.4    Nakai, S.5    Yoshida, T.6    Habe, H.7    Omori, T.8
  • 10
    • 73449088005 scopus 로고    scopus 로고
    • Identification of genes regulated by the MvaT-like paralogues TurA and TurB of Pseudomonas putida KT2440
    • Renzi F., Rescalli E., Galli E., Bertoni G. Identification of genes regulated by the MvaT-like paralogues TurA and TurB of Pseudomonas putida KT2440. Environ. Microbiol. 2010, 12:254-263.
    • (2010) Environ. Microbiol. , vol.12 , pp. 254-263
    • Renzi, F.1    Rescalli, E.2    Galli, E.3    Bertoni, G.4
  • 12
    • 28444464825 scopus 로고    scopus 로고
    • Recipient range of IncP-7 conjugative plasmid pCAR2 from Pseudomonas putida HS01 is broader than from other Pseudomonas strains
    • Shintani M., Habe H., Tsuda M., Omori T., Yamane H., Nojiri H. Recipient range of IncP-7 conjugative plasmid pCAR2 from Pseudomonas putida HS01 is broader than from other Pseudomonas strains. Biotechnol. Lett. 2005, 27:1847-1853.
    • (2005) Biotechnol. Lett. , vol.27 , pp. 1847-1853
    • Shintani, M.1    Habe, H.2    Tsuda, M.3    Omori, T.4    Yamane, H.5    Nojiri, H.6
  • 13
    • 79961090440 scopus 로고    scopus 로고
    • Evolution of the IncP-7 carbazole-degradative plasmid pCAR1 improves survival of its host Pseudomonas fluorescens Pf0-1 in artificial water microcosm
    • doi:10.1099/mic.0.049064-0
    • Shintani, M., Horisaki, T., Yamane, H., Ohkuma, M., Nojiri, H., in press. Evolution of the IncP-7 carbazole-degradative plasmid pCAR1 improves survival of its host Pseudomonas fluorescens Pf0-1 in artificial water microcosm. Microbiology. doi: doi:10.1099/mic.0.049064-0.
    • Microbiology
    • Shintani, M.1    Horisaki, T.2    Yamane, H.3    Ohkuma, M.4    Nojiri, H.5
  • 14
    • 18844421873 scopus 로고    scopus 로고
    • Large plasmid pCAR2 and class II transposon Tn4676 are functional mobile genetic elements to distribute the carbazole/dioxin-degradative car gene cluster in different bacteria
    • Shintani M., Yoshida T., Habe H., Omori T., Nojiri H. Large plasmid pCAR2 and class II transposon Tn4676 are functional mobile genetic elements to distribute the carbazole/dioxin-degradative car gene cluster in different bacteria. Appl. Microbiol. Biotechnol. 2005, 67:370-382.
    • (2005) Appl. Microbiol. Biotechnol. , vol.67 , pp. 370-382
    • Shintani, M.1    Yoshida, T.2    Habe, H.3    Omori, T.4    Nojiri, H.5
  • 15
    • 33646588646 scopus 로고    scopus 로고
    • Characterization of the replication, maintenance, and transfer features of the IncP-7 plasmid pCAR1, which carries genes involved in carbazole and dioxin degradation
    • Shintani M., Yano H., Habe H., Omori T., Yamane H., Tsuda M., Nojiri H. Characterization of the replication, maintenance, and transfer features of the IncP-7 plasmid pCAR1, which carries genes involved in carbazole and dioxin degradation. Appl. Environ. Microbiol. 2006, 72:3206-3216.
    • (2006) Appl. Environ. Microbiol. , vol.72 , pp. 3206-3216
    • Shintani, M.1    Yano, H.2    Habe, H.3    Omori, T.4    Yamane, H.5    Tsuda, M.6    Nojiri, H.7
  • 16
    • 36649000680 scopus 로고    scopus 로고
    • Conjugative transfer of the IncP-7 carbazole degradative plasmid, pCAR1, in river water samples
    • Shintani M., Fukushima N., Tezuka M., Yamane H., Nojiri H. Conjugative transfer of the IncP-7 carbazole degradative plasmid, pCAR1, in river water samples. Biotechnol. Lett. 2008, 30:117-122.
    • (2008) Biotechnol. Lett. , vol.30 , pp. 117-122
    • Shintani, M.1    Fukushima, N.2    Tezuka, M.3    Yamane, H.4    Nojiri, H.5
  • 17
    • 50249099706 scopus 로고    scopus 로고
    • Behavior of the IncP-7 carbazole-degradative plasmid pCAR1 in artificial environmental samples
    • Shintani M., Matsui K., Takemura T., Yamane H., Nojiri H. Behavior of the IncP-7 carbazole-degradative plasmid pCAR1 in artificial environmental samples. Appl. Microbiol. Biotechnol. 2008, 80:485-497.
    • (2008) Appl. Microbiol. Biotechnol. , vol.80 , pp. 485-497
    • Shintani, M.1    Matsui, K.2    Takemura, T.3    Yamane, H.4    Nojiri, H.5
  • 19
    • 77249100767 scopus 로고    scopus 로고
    • Behavior of various hosts of the IncP-7 carbazole-degradative plasmid pCAR1 in artificial microcosms
    • Shintani M., Yamane H., Nojiri H. Behavior of various hosts of the IncP-7 carbazole-degradative plasmid pCAR1 in artificial microcosms. Biosci. Biotechnol. Biochem. 2010, 74:343-349.
    • (2010) Biosci. Biotechnol. Biochem. , vol.74 , pp. 343-349
    • Shintani, M.1    Yamane, H.2    Nojiri, H.3
  • 20
    • 78650037585 scopus 로고    scopus 로고
    • The behavior and significance of degradative plasmids belonging to Inc groups in Pseudomonas within natural environments and microcosms
    • Shintani M., Takahashi Y., Yamane H., Nojiri H. The behavior and significance of degradative plasmids belonging to Inc groups in Pseudomonas within natural environments and microcosms. Microb. Environ. 2010, 25:253-265.
    • (2010) Microb. Environ. , vol.25 , pp. 253-265
    • Shintani, M.1    Takahashi, Y.2    Yamane, H.3    Nojiri, H.4
  • 21
    • 79955800372 scopus 로고    scopus 로고
    • Oligomerization and DNA-binding capacity of Pmr, a histone-like protein H1 (H-NS) family protein encoded on IncP-7 carbazole-degradative plasmid pCAR1
    • Suzuki C., Yun C.S., Umeda T., Terabayashi T., Watanabe K., Yamane H., Nojiri H. Oligomerization and DNA-binding capacity of Pmr, a histone-like protein H1 (H-NS) family protein encoded on IncP-7 carbazole-degradative plasmid pCAR1. Biosci. Biotechnol. Biochem. 2011, 75:711-717.
    • (2011) Biosci. Biotechnol. Biochem. , vol.75 , pp. 711-717
    • Suzuki, C.1    Yun, C.S.2    Umeda, T.3    Terabayashi, T.4    Watanabe, K.5    Yamane, H.6    Nojiri, H.7
  • 22
    • 67149128137 scopus 로고    scopus 로고
    • Carbazole-degradative IncP-7 plasmid pCAR1.2 is structurally unstable in Pseudomonas fluorescens Pf0-1, which accumulates catechol, the intermediate of the carbazole degradation pathway
    • Takahashi Y., Shintani M., Li L., Yamane H., Nojiri H. Carbazole-degradative IncP-7 plasmid pCAR1.2 is structurally unstable in Pseudomonas fluorescens Pf0-1, which accumulates catechol, the intermediate of the carbazole degradation pathway. Appl. Environ. Microbiol. 2009, 75:3920-3929.
    • (2009) Appl. Environ. Microbiol. , vol.75 , pp. 3920-3929
    • Takahashi, Y.1    Shintani, M.2    Li, L.3    Yamane, H.4    Nojiri, H.5
  • 23
    • 65349135881 scopus 로고    scopus 로고
    • The complete nucleotide sequence of pCAR2: pCAR2 and pCAR1 were structurally identical IncP-7 carbazole degradative plasmids
    • Takahashi Y., Shintani M., Yamane H., Nojiri H. The complete nucleotide sequence of pCAR2: pCAR2 and pCAR1 were structurally identical IncP-7 carbazole degradative plasmids. Biosci. Biotechnol. Biochem. 2009, 73:744-746.
    • (2009) Biosci. Biotechnol. Biochem. , vol.73 , pp. 744-746
    • Takahashi, Y.1    Shintani, M.2    Yamane, H.3    Nojiri, H.4
  • 24
    • 0023504678 scopus 로고
    • Genetic analysis of a transposon carrying toluene degrading genes on a TOL plasmid pWW0
    • Tsuda M., Iino T. Genetic analysis of a transposon carrying toluene degrading genes on a TOL plasmid pWW0. Mol. Gen. Genet. 1987, 210:270-276.
    • (1987) Mol. Gen. Genet. , vol.210 , pp. 270-276
    • Tsuda, M.1    Iino, T.2
  • 25
    • 4944257147 scopus 로고    scopus 로고
    • Transcriptional regulation of the ant operon, encoding two-component anthranilate 1,2-dioxygenase, on the carbazole-degradative plasmid pCAR1 of Pseudomonas resinovorans strain CA10
    • Urata M., Miyakoshi M., Kai S., Maeda K., Habe H., Omori T., Yamane H., Nojiri H. Transcriptional regulation of the ant operon, encoding two-component anthranilate 1,2-dioxygenase, on the carbazole-degradative plasmid pCAR1 of Pseudomonas resinovorans strain CA10. J. Bacteriol. 2004, 186:6815-6823.
    • (2004) J. Bacteriol. , vol.186 , pp. 6815-6823
    • Urata, M.1    Miyakoshi, M.2    Kai, S.3    Maeda, K.4    Habe, H.5    Omori, T.6    Yamane, H.7    Nojiri, H.8
  • 26
    • 34247358195 scopus 로고    scopus 로고
    • Complete sequence determination combined with analysis of transposition/site-specific recombination events to explain genetic organization of IncP-7 TOL plasmid pWW53 and related mobile genetic elements
    • Yano H., Garruto C., Sota M., Ohtsubo Y., Nagata Y., Zylstra G., Williams P., Tsuda M. Complete sequence determination combined with analysis of transposition/site-specific recombination events to explain genetic organization of IncP-7 TOL plasmid pWW53 and related mobile genetic elements. J. Mol. Biol. 2007, 369:11-26.
    • (2007) J. Mol. Biol. , vol.369 , pp. 11-26
    • Yano, H.1    Garruto, C.2    Sota, M.3    Ohtsubo, Y.4    Nagata, Y.5    Zylstra, G.6    Williams, P.7    Tsuda, M.8
  • 27
    • 77956548642 scopus 로고    scopus 로고
    • Complete nucleotide sequence of TOL plasmid pDK1 provides evidence for evolutionary history of IncP-7 catabolic plasmids
    • Yano H., Miyakoshi M., Ohshima K., Tabata M., Nagata Y., Hattori M., Tsuda M. Complete nucleotide sequence of TOL plasmid pDK1 provides evidence for evolutionary history of IncP-7 catabolic plasmids. J. Bacteriol. 2010, 192:4337-4347.
    • (2010) J. Bacteriol. , vol.192 , pp. 4337-4347
    • Yano, H.1    Miyakoshi, M.2    Ohshima, K.3    Tabata, M.4    Nagata, Y.5    Hattori, M.6    Tsuda, M.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.