-
1
-
-
0019805971
-
Specific-purpose plasmid cloning vectors. II. Broad host range, high copy number, RSF1010-derived vectors, and a host-vector system for gene cloning in Pseudomonas
-
Bagdasarian, M., R. Lurz, B. Ruckert, F. C. Franklin, M. M. Bagdasarian, J. Frey, and K. N. Timmis. 1981. Specific-purpose plasmid cloning vectors. II. Broad host range, high copy number, RSF1010-derived vectors, and a host-vector system for gene cloning in Pseudomonas. Gene 16:237-247.
-
(1981)
Gene
, vol.16
, pp. 237-247
-
-
Bagdasarian, M.1
Lurz, R.2
Ruckert, B.3
Franklin, F.C.4
Bagdasarian, M.M.5
Frey, J.6
Timmis, K.N.7
-
2
-
-
2442682800
-
Definition of a bacterial type IV secretion pathway for a DNA substrate
-
Cascales, E., and P. J. Christie. 2004. Definition of a bacterial type IV secretion pathway for a DNA substrate. Science 304:1170-1173.
-
(2004)
Science
, vol.304
, pp. 1170-1173
-
-
Cascales, E.1
Christie, P.J.2
-
3
-
-
1842456892
-
The versatile bacterial type IV secretion systems
-
Cascales, E., and P. J. Christie. 2003. The versatile bacterial type IV secretion systems. Nat. Rev. Microbiol. 1:137-149.
-
(2003)
Nat. Rev. Microbiol
, vol.1
, pp. 137-149
-
-
Cascales, E.1
Christie, P.J.2
-
4
-
-
21444457864
-
A Tn7-based broad-range bacterial cloning and expression system
-
Choi, K. H., J. B. Gaynor, K. G. White, C. Lopez, C. M. Bosio, R. R. Karkhoff-Schweizer, and H. P. Schweizer. 2005. A Tn7-based broad-range bacterial cloning and expression system. Nat. Methods 2:443-448.
-
(2005)
Nat. Methods
, vol.2
, pp. 443-448
-
-
Choi, K.H.1
Gaynor, J.B.2
White, K.G.3
Lopez, C.4
Bosio, C.M.5
Karkhoff-Schweizer, R.R.6
Schweizer, H.P.7
-
5
-
-
0031869639
-
Plasposons: Modular self-cloning minitransposon derivatives for rapid genetic analysis of gram-negative bacterial genomes
-
Dennis, J. J., and G. J. Zylstra. 1998. Plasposons: modular self-cloning minitransposon derivatives for rapid genetic analysis of gram-negative bacterial genomes. Appl. Environ. Microbiol. 64:2710-2715.
-
(1998)
Appl. Environ. Microbiol
, vol.64
, pp. 2710-2715
-
-
Dennis, J.J.1
Zylstra, G.J.2
-
6
-
-
27744478719
-
Functional interactions between type IV secretion systems involved in DNA transfer and virulence
-
de Paz, H. D., F. J. Sangari, S. Bolland, J. M. Garcia-Lobo, C. Dehio, F. de la Cruz, and M. Llosa. 2005. Functional interactions between type IV secretion systems involved in DNA transfer and virulence. Microbiology 151:3505-3516.
-
(2005)
Microbiology
, vol.151
, pp. 3505-3516
-
-
de Paz, H.D.1
Sangari, F.J.2
Bolland, S.3
Garcia-Lobo, J.M.4
Dehio, C.5
de la Cruz, F.6
Llosa, M.7
-
7
-
-
0015781618
-
Transmissible plasmid coding early enzymes of naphthalene oxidation in Pseudomonas putida
-
Dunn, N. W., and I. C. Gunsalus. 1973. Transmissible plasmid coding early enzymes of naphthalene oxidation in Pseudomonas putida. J. Bacteriol. 114:974-979.
-
(1973)
J. Bacteriol
, vol.114
, pp. 974-979
-
-
Dunn, N.W.1
Gunsalus, I.C.2
-
8
-
-
33750042532
-
Dynamics of the IncW genetic backbone imply general trends in conjugative plasmid evolution
-
Fernandez-Lopez, R., M. P. Garcillan-Barcia, C. Revilla, M. Lazaro, L. Vielva, and F. de la Cruz. 2006. Dynamics of the IncW genetic backbone imply general trends in conjugative plasmid evolution. FEMS Microbiol. Rev. 30:942-966.
-
(2006)
FEMS Microbiol. Rev
, vol.30
, pp. 942-966
-
-
Fernandez-Lopez, R.1
Garcillan-Barcia, M.P.2
Revilla, C.3
Lazaro, M.4
Vielva, L.5
de la Cruz, F.6
-
9
-
-
0024636392
-
Conjugative transfer of promiscuous IncP plasmids: Interaction of plasmid-encoded products with the transfer origin
-
Furste, J. P., W. Pansegrau, G. Ziegelin, M. Kroger, and E. Lanka. 1989. Conjugative transfer of promiscuous IncP plasmids: interaction of plasmid-encoded products with the transfer origin. Proc. Natl. Acad. Sci. USA 86:1771-1775.
-
(1989)
Proc. Natl. Acad. Sci. USA
, vol.86
, pp. 1771-1775
-
-
Furste, J.P.1
Pansegrau, W.2
Ziegelin, G.3
Kroger, M.4
Lanka, E.5
-
10
-
-
0344628800
-
Recognition and processing of the origin of transfer DNA by conjugative relaxase TrwC
-
Guasch, A., M. Lucas, G. Moncalian, M. Cabezas, R. Perez-Luque, F. X. Gomis-Ruth, F. de la Cruz, and M. Coll. 2003. Recognition and processing of the origin of transfer DNA by conjugative relaxase TrwC. Nat. Struct. Biol. 10:1002-1010.
-
(2003)
Nat. Struct. Biol
, vol.10
, pp. 1002-1010
-
-
Guasch, A.1
Lucas, M.2
Moncalian, G.3
Cabezas, M.4
Perez-Luque, R.5
Gomis-Ruth, F.X.6
de la Cruz, F.7
Coll, M.8
-
11
-
-
0033621572
-
Small, stable shuttle vectors based on the minimal pVS1 replicon for use in gram-negative, plant-associated bacteria
-
Heeb, S., Y. Itoh, T. Nishijyo, U. Schnider, C. Keel, J. Wade, U. Walsh, F. O'Gara, and D. Haas. 2000. Small, stable shuttle vectors based on the minimal pVS1 replicon for use in gram-negative, plant-associated bacteria. Mol. Plant-Microbe. Interact. 13:232-237.
-
(2000)
Mol. Plant-Microbe. Interact
, vol.13
, pp. 232-237
-
-
Heeb, S.1
Itoh, Y.2
Nishijyo, T.3
Schnider, U.4
Keel, C.5
Wade, J.6
Walsh, U.7
O'Gara, F.8
Haas, D.9
-
12
-
-
0032575051
-
A broad-host-range Flp-FRT recombination system for site-specific excision of chromosomally-located DNA sequences: Application for isolation of unmarked Pseudomonas aeruginosa mutants
-
Hoang, T. T., R. R. Karkhoff-Schweizer, A. J. Kutchma, and H. P. Schweizer. 1998. A broad-host-range Flp-FRT recombination system for site-specific excision of chromosomally-located DNA sequences: application for isolation of unmarked Pseudomonas aeruginosa mutants. Gene 212:77-86.
-
(1998)
Gene
, vol.212
, pp. 77-86
-
-
Hoang, T.T.1
Karkhoff-Schweizer, R.R.2
Kutchma, A.J.3
Schweizer, H.P.4
-
13
-
-
18344402639
-
AnkB, a periplasmic ankyrin-like protein in Pseudomonas aeruginosa, is required for optimal catalase B (KatB) activity and resistance to hydrogen peroxide
-
Howell, M. L., E. Alsabbagh, J. F. Ma, U. A. Ochsner, M. G. Klotz, T. J. Beveridge, K. M. Blumenthal, E. C. Niederhoffer, R. E. Morris, D. Needham, G. E. Dean, M. A. Wani, and D. J. Hassett. 2000. AnkB, a periplasmic ankyrin-like protein in Pseudomonas aeruginosa, is required for optimal catalase B (KatB) activity and resistance to hydrogen peroxide. J. Bacteriol. 182:4545-4556.
-
(2000)
J. Bacteriol
, vol.182
, pp. 4545-4556
-
-
Howell, M.L.1
Alsabbagh, E.2
Ma, J.F.3
Ochsner, U.A.4
Klotz, M.G.5
Beveridge, T.J.6
Blumenthal, K.M.7
Niederhoffer, E.C.8
Morris, R.E.9
Needham, D.10
Dean, G.E.11
Wani, M.A.12
Hassett, D.J.13
-
14
-
-
0038191057
-
Distribution and organization of auxotrophic genes on the multichromosomal genome of Burkholderia multivorans ATCC 17616
-
Komatsu, H., Y. Imura, A. Ohori, Y. Nagata, and M. Tsuda. 2003. Distribution and organization of auxotrophic genes on the multichromosomal genome of Burkholderia multivorans ATCC 17616. J. Bacteriol. 185:3333-3343.
-
(2003)
J. Bacteriol
, vol.185
, pp. 3333-3343
-
-
Komatsu, H.1
Imura, Y.2
Ohori, A.3
Nagata, Y.4
Tsuda, M.5
-
15
-
-
0028793123
-
Four new derivatives of the broad-host-range cloning vector pBBR1MCS, carrying different antibiotic-resistance cassettes
-
Kovach, M. E., P. H. Elzer, D. S. Hill, G. T. Robertson, M. A. Farris, R. M. Roop II, and K. M. Peterson. 1995. Four new derivatives of the broad-host-range cloning vector pBBR1MCS, carrying different antibiotic-resistance cassettes. Gene 166:175-176.
-
(1995)
Gene
, vol.166
, pp. 175-176
-
-
Kovach, M.E.1
Elzer, P.H.2
Hill, D.S.3
Robertson, G.T.4
Farris, M.A.5
Roop II, R.M.6
Peterson, K.M.7
-
16
-
-
3042786311
-
Mini-Tn7 transposons for site-specific tagging of bacteria with fluorescent proteins
-
Lambertsen, L., C. Sternberg, and S. Molin. 2004. Mini-Tn7 transposons for site-specific tagging of bacteria with fluorescent proteins. Environ. Microbiol. 6:726-732.
-
(2004)
Environ. Microbiol
, vol.6
, pp. 726-732
-
-
Lambertsen, L.1
Sternberg, C.2
Molin, S.3
-
17
-
-
0027482476
-
The mating pair formation system of plasmid RP4 defined by RSF1010 mobilization and donor-specific phage propagation
-
Lessl, M., D. Balzer, K. Weyrauch, and E. Lanka. 1993. The mating pair formation system of plasmid RP4 defined by RSF1010 mobilization and donor-specific phage propagation. J. Bacteriol. 175:6415-6425.
-
(1993)
J. Bacteriol
, vol.175
, pp. 6415-6425
-
-
Lessl, M.1
Balzer, D.2
Weyrauch, K.3
Lanka, E.4
-
18
-
-
0004136246
-
-
Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
-
Maniatis, T., E. F. Fritsch, and J. Sambrook. 1982. Molecular cloning: a laboratory manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
-
(1982)
Molecular cloning: A laboratory manual
-
-
Maniatis, T.1
Fritsch, E.F.2
Sambrook, J.3
-
19
-
-
33845738762
-
A protein encoded by the bovine herpesvirus 1 latency-related gene interacts with specific cellular regulatory proteins, including CCAAT enhancer binding protein alpha
-
Meyer, F., S. Perez, V. Geiser, M. Sintek, M. Inman, and C. Jones. 2007. A protein encoded by the bovine herpesvirus 1 latency-related gene interacts with specific cellular regulatory proteins, including CCAAT enhancer binding protein alpha. J. Virol. 81:59-67.
-
(2007)
J. Virol
, vol.81
, pp. 59-67
-
-
Meyer, F.1
Perez, S.2
Geiser, V.3
Sintek, M.4
Inman, M.5
Jones, C.6
-
20
-
-
33751017401
-
Complete nucleotide sequence of an exogenously isolated plasmid, pLB1, involved in γ-hexachlorocyclohexane degradation
-
Miyazaki, R., Y. Sato, M. Ito, Y. Ohtsubo, Y. Nagata, and M. Tsuda. 2006. Complete nucleotide sequence of an exogenously isolated plasmid, pLB1, involved in γ-hexachlorocyclohexane degradation. Appl. Environ. Microbiol. 72:6923-6933.
-
(2006)
Appl. Environ. Microbiol
, vol.72
, pp. 6923-6933
-
-
Miyazaki, R.1
Sato, Y.2
Ito, M.3
Ohtsubo, Y.4
Nagata, Y.5
Tsuda, M.6
-
21
-
-
33744471909
-
Identification of a response regulator gene for catabolite control from a PCB-degrading β-proteobacteria, Acidovorax sp. KKS102
-
Ohtsubo, Y., H. Goto, Y. Nagata, T. Kudo, and M. Tsuda. 2006. Identification of a response regulator gene for catabolite control from a PCB-degrading β-proteobacteria, Acidovorax sp. KKS102. Mol. Microbiol. 60:1563-1575.
-
(2006)
Mol. Microbiol
, vol.60
, pp. 1563-1575
-
-
Ohtsubo, Y.1
Goto, H.2
Nagata, Y.3
Kudo, T.4
Tsuda, M.5
-
22
-
-
33846796432
-
Isolation and characterization of naphthalene-catabolic genes and plasmids from oil-contaminated soil by using two cultivation-independent approaches
-
Ono, A., R. Miyazaki, M. Sota, Y. Ohtsubo, Y. Nagata, and M. Tsuda. 2007. Isolation and characterization of naphthalene-catabolic genes and plasmids from oil-contaminated soil by using two cultivation-independent approaches. Appl. Microbiol. Biotechnol. 74:501-510.
-
(2007)
Appl. Microbiol. Biotechnol
, vol.74
, pp. 501-510
-
-
Ono, A.1
Miyazaki, R.2
Sota, M.3
Ohtsubo, Y.4
Nagata, Y.5
Tsuda, M.6
-
23
-
-
0030348252
-
Enzymology of DNA transfer by conjugative mechanisms
-
Pansegrau, W., and E. Lanka. 1996. Enzymology of DNA transfer by conjugative mechanisms. Prog. Nucleic Acid Res. Mol. Biol. 54:197-251.
-
(1996)
Prog. Nucleic Acid Res. Mol. Biol
, vol.54
, pp. 197-251
-
-
Pansegrau, W.1
Lanka, E.2
-
24
-
-
0028302354
-
Complete nucleotide sequence of Birmingham IncPα plasmids. Compilation and comparative analysis
-
Pansegrau, W., E. Lanka, P. T. Barth, D. H. Figurski, D. G. Guiney, D. Haas, D. R. Helinski, H. Schwab, V. A. Stanisich, and C. M. Thomas. 1994. Complete nucleotide sequence of Birmingham IncPα plasmids. Compilation and comparative analysis. J. Mol. Biol. 239:623-663.
-
(1994)
J. Mol. Biol
, vol.239
, pp. 623-663
-
-
Pansegrau, W.1
Lanka, E.2
Barth, P.T.3
Figurski, D.H.4
Guiney, D.G.5
Haas, D.6
Helinski, D.R.7
Schwab, H.8
Stanisich, V.A.9
Thomas, C.M.10
-
25
-
-
0032958727
-
Genetic analysis of the mobilization and leading regions of the IncN plasmids pKM101 and pCU1
-
Paterson, E. S., M. I. More, G. Pillay, C. Cellini, R. Woodgate, G. C. Walker, V. N. Iyer, and S. C. Winans. 1999. Genetic analysis of the mobilization and leading regions of the IncN plasmids pKM101 and pCU1. J. Bacteriol. 181:2572-2583.
-
(1999)
J. Bacteriol
, vol.181
, pp. 2572-2583
-
-
Paterson, E.S.1
More, M.I.2
Pillay, G.3
Cellini, C.4
Woodgate, R.5
Walker, G.C.6
Iyer, V.N.7
Winans, S.C.8
-
26
-
-
23344440104
-
-
Paulsen, I. T., C. M. Press, J. Ravel, D. Y. Kobayashi, G. S. Myers, D. V. Mavrodi, R. T. DeBoy, R. Seshadri, Q. Ren, R. Madupu, R. J. Dodson, A. S. Durkin, L. M. Brinkac, S. C. Daugherty, S. A. Sullivan, M. J. Rosovitz, M. L. Gwinn, L. Zhou, D. J. Schneider, S. W. Cartinhour, W. C. Nelson, J. Weidman, K. Watkins, K. Tran, H. Khouri, E. A. Pierson, L. S. Pierson III, L. S. Thomashow, and J. E. Loper. 2005. Complete genome sequence of the plant commensal Pseudomonas fluorescens Pf-5. Nat. Biotechnol. 23:873-878.
-
Paulsen, I. T., C. M. Press, J. Ravel, D. Y. Kobayashi, G. S. Myers, D. V. Mavrodi, R. T. DeBoy, R. Seshadri, Q. Ren, R. Madupu, R. J. Dodson, A. S. Durkin, L. M. Brinkac, S. C. Daugherty, S. A. Sullivan, M. J. Rosovitz, M. L. Gwinn, L. Zhou, D. J. Schneider, S. W. Cartinhour, W. C. Nelson, J. Weidman, K. Watkins, K. Tran, H. Khouri, E. A. Pierson, L. S. Pierson III, L. S. Thomashow, and J. E. Loper. 2005. Complete genome sequence of the plant commensal Pseudomonas fluorescens Pf-5. Nat. Biotechnol. 23:873-878.
-
-
-
-
27
-
-
0004136246
-
-
2nd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
-
Sambrook, J., E. F. Fritsch, and T. Maniatis. 1989. Molecular cloning: a laboratory manual, 2nd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
-
(1989)
Molecular cloning: A laboratory manual
-
-
Sambrook, J.1
Fritsch, E.F.2
Maniatis, T.3
-
28
-
-
19344374255
-
The mating pair formation system of conjugative plasmids: A versatile secretion machinery for transfer of proteins and DNA
-
Schroder, G., and E. Lanka. 2005. The mating pair formation system of conjugative plasmids: a versatile secretion machinery for transfer of proteins and DNA. Plasmid 54:1-25.
-
(2005)
Plasmid
, vol.54
, pp. 1-25
-
-
Schroder, G.1
Lanka, E.2
-
29
-
-
0027134384
-
Small broad-host-range gentamycin resistance gene cassettes for site-specific insertion and deletion mutagenesis
-
Schweizer, H. D. 1993. Small broad-host-range gentamycin resistance gene cassettes for site-specific insertion and deletion mutagenesis. BioTechniques 15:831-834.
-
(1993)
BioTechniques
, vol.15
, pp. 831-834
-
-
Schweizer, H.D.1
-
30
-
-
33744718828
-
Genomic and functional analysis of the IncP-9 naphthalene-catabolic plasmid NAH7 and its transposon Tn4655 suggests catabolic gene spread by a tyrosine recombinase
-
Sota, M., H. Yano, A. Ono, R. Miyazaki, H. Ishii, H. Genka, E. M. Top, and M. Tsuda. 2006. Genomic and functional analysis of the IncP-9 naphthalene-catabolic plasmid NAH7 and its transposon Tn4655 suggests catabolic gene spread by a tyrosine recombinase. J. Bacteriol. 188:4057-4067.
-
(2006)
J. Bacteriol
, vol.188
, pp. 4057-4067
-
-
Sota, M.1
Yano, H.2
Ono, A.3
Miyazaki, R.4
Ishii, H.5
Genka, H.6
Top, E.M.7
Tsuda, M.8
-
31
-
-
20444431234
-
TrwB, the coupling protein involved in DNA transport during bacterial conjugation, is a DNA-dependent ATPase
-
Tato, I., S. Zunzunegui, F. de la Cruz, and E. Cabezon. 2005. TrwB, the coupling protein involved in DNA transport during bacterial conjugation, is a DNA-dependent ATPase. Proc. Natl. Acad. Sci. USA 102:8156-8161.
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 8156-8161
-
-
Tato, I.1
Zunzunegui, S.2
de la Cruz, F.3
Cabezon, E.4
-
32
-
-
0345414811
-
A correction in the nucleotide sequence of the Tn903 kanamycin resistance determinant in pUC4K
-
Taylor, L. A., and R. E. Rose. 1988. A correction in the nucleotide sequence of the Tn903 kanamycin resistance determinant in pUC4K. Nucleic Acids Res. 16:358.
-
(1988)
Nucleic Acids Res
, vol.16
, pp. 358
-
-
Taylor, L.A.1
Rose, R.E.2
-
33
-
-
0035181362
-
Export of active green fluorescent protein to the periplasm by the twin-arginine translocase (Tat) pathway in Escherichia coli
-
Thomas, J. D., R. A. Daniel, J. Errington, and C. Robinson. 2001. Export of active green fluorescent protein to the periplasm by the twin-arginine translocase (Tat) pathway in Escherichia coli. Mol. Microbiol. 39:47-53.
-
(2001)
Mol. Microbiol
, vol.39
, pp. 47-53
-
-
Thomas, J.D.1
Daniel, R.A.2
Errington, J.3
Robinson, C.4
-
34
-
-
0025073507
-
Naphthalene degrading genes on plasmid NAH7 are on a defective transposon
-
Tsuda, M., and T. Iino. 1990. Naphthalene degrading genes on plasmid NAH7 are on a defective transposon. Mol. Gen. Genet. 223:33-39.
-
(1990)
Mol. Gen. Genet
, vol.223
, pp. 33-39
-
-
Tsuda, M.1
Iino, T.2
-
35
-
-
0141995000
-
Analysis of the mobilization region of the broad-host-range IncQ-like plasmid pTC-F14 and its ability to interact with a related plasmid, pTF-FC2
-
van Zyl, L. J., S. M. Deane, and D. E. Rawlings. 2003. Analysis of the mobilization region of the broad-host-range IncQ-like plasmid pTC-F14 and its ability to interact with a related plasmid, pTF-FC2. J. Bacteriol. 185:6104-6111.
-
(2003)
J. Bacteriol
, vol.185
, pp. 6104-6111
-
-
van Zyl, L.J.1
Deane, S.M.2
Rawlings, D.E.3
-
36
-
-
0025979752
-
Sequence identity in the nick regions of IncP plasmid transfer origins and T-DNA borders of Agrobacterium Ti plasmids
-
Waters, V. L., K. H. Hirata, W. Pansegrau, E. Lanka, and D. G. Guiney. 1991. Sequence identity in the nick regions of IncP plasmid transfer origins and T-DNA borders of Agrobacterium Ti plasmids. Proc. Natl. Acad. Sci. USA 88:1456-1460.
-
(1991)
Proc. Natl. Acad. Sci. USA
, vol.88
, pp. 1456-1460
-
-
Waters, V.L.1
Hirata, K.H.2
Pansegrau, W.3
Lanka, E.4
Guiney, D.G.5
-
37
-
-
0021943518
-
Improved M13 phage cloning vectors and host strains: Nucleotide sequences of the M13mp18 and pUC19 vectors
-
Yanisch-Perron, C., J. Vieira, and J. Messing. 1985. Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors. Gene 33:103-119.
-
(1985)
Gene
, vol.33
, pp. 103-119
-
-
Yanisch-Perron, C.1
Vieira, J.2
Messing, J.3
-
38
-
-
0026800883
-
TraK protein of conjugative plasmid RP4 forms a specialized nucleoprotein complex with the transfer origin
-
Ziegelin, G., W. Pansegrau, R. Lurz, and E. Lanka. 1992. TraK protein of conjugative plasmid RP4 forms a specialized nucleoprotein complex with the transfer origin. J. Biol. Chem. 267:17279-17286.
-
(1992)
J. Biol. Chem
, vol.267
, pp. 17279-17286
-
-
Ziegelin, G.1
Pansegrau, W.2
Lurz, R.3
Lanka, E.4
|