Antiviral effects of inhibiting host gene expression

Current Topics in Microbiology and Immunology

Volumn 386, Issue , 2015, Pages 459-477

  Tripp, Ralph A ^a   Mark Tompkins, S ^a  

^a UNIVERSITY OF GEORGIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

G PROTEIN COUPLED RECEPTOR; HOST FACTOR; INTERFERON; MATRIX PROTEIN; MICRORNA; VIRUS RNA; ZIDOVUDINE; ANTIVIRUS AGENT;

ADAPTIVE IMMUNITY; ANTIVIRAL ACTIVITY; ARTICLE; DRUG DESIGN; DRUG REPOSITIONING; DRUG TARGETING; GENE EXPRESSION; HIGH THROUGHPUT SCREENING; HUMAN; INFLUENZA; INFLUENZA VIRUS A; INNATE IMMUNITY; LIFE CYCLE STAGE; NONHUMAN; PRIORITY JOURNAL; RNA INTERFERENCE; VIRUS REPLICATION; VIRUS STRAIN; DRUG EFFECTS; GENETICS; IMMUNOLOGY; PHYSIOLOGY; VIROLOGY;

ORTHOMYXOVIRIDAE;

ANTIVIRAL AGENTS; GENE EXPRESSION; HIGH-THROUGHPUT SCREENING ASSAYS; HUMANS; INFLUENZA, HUMAN; INTERFERONS; MICRORNAS; RNA INTERFERENCE; VIRUS REPLICATION;

EID: 84921693765     PISSN: 0070217X     EISSN: 21969965     Source Type: Book Series    
DOI: 10.1007/82_2014_409     Document Type: Article

References (110)

1. Ahmed CM, Dabelic R, Martin JP, Jager LD, Haider SM, Johnson HM (2010) J Immunol 185: 1103-1113.
2. Aigner A (2006) J Biotechnol 124: 12-25.
3. Akk G, Steinbach JH (2011) Anesthesiology 115: 1338-1348.
4. Aldridge JR, Moseley CE, Boltz DA, Negovetich NJ, Reynolds C, Franks J, Brown SA, Doherty PC, Webster RG, Thomas PG (2009) Proceedings of the National Academy of Sciences 106: 5306-5311.
5. Antczak C, Mahida JP, Singh C, Calder PA, Djaballah H (2014) Comb Chem High Throughput Screen 17: 12-24.
6. Antczak C, Takagi T, Ramirez CN, Radu C, Djaballah H (2009) J Biomol Screen 14: 956-969.
7. Antonelli G, Turriziani O (2012) Int J Antimicrob Agents 40: 95-102.
8. Audsley MD, Moseley GW (2013) World J Virol 2: 57-70.
9. Bakre A, Andersen LE, Meliopoulos V, Coleman K, Yan X, Brooks P, Crabtree J, Tompkins SM, Tripp RA (2013) PLoS One 8: e66796.
10. Banerjee I, Yamauchi Y, Helenius A, Horvath P (2013) PLoS One 8: e68450.
11. Baron J, Tarnow C, Mayoli-Nüssle D, Schilling E, Meyer D, Hammami M, Schwalm F, Steinmetzer T, Guan Y, Garten W, Klenk H-D, Böttcher-Friebertshäuser E (2012) J Virol 87(3): 1811-1820.
12. Betakova T, Svancarova P (2013) Acta Virol 57: 97-104.
13. Bonjardim CA, Ferreira PC, Kroon EG (2009) Immunol Lett 122: 1-11.
14. Brass AL, Huang IC, Benita Y, John SP, Krishnan MN, Feeley EM, Ryan BJ, Weyer JL, van der Weyden L, Fikrig E, Adams DJ, Xavier RJ, Farzan M, Elledge SJ (2009) Cell 139: 1243-1254.
15. Britten CD (2013) Cancer Chemother Pharmacol 71: 1395-1409.
16. Budd A, Alleva L, Alsharifi M, Koskinen A, Smythe V, Mullbacher A, Wood J, Clark I (2007) Antimicrob Agents Chemother 51: 2965-2968.
17. Campeau E, Gobeil S (2011) Brief Funct Genomics 10: 215-226.
18. Cannon M (2007) Curr Top Microbiol Immunol 312: 137-156.
19. Carey MA, Bradbury JA, Rebolloso YD, Graves JP, Zeldin DC, Germolec DR (2010) PLoS One 5: e11610.
20. Chen J, Zhang W (2012) J Chem Phys 137: 225102.
21. Chen XY, Wu TX, Liu GJ, Wang Q, Zheng J, Wei J, Ni J, Zhou LK, Duan X, Qiao JQ (2007) Cochrane Database Syst Rev CD004559.
22. Clark J, Ding S (2006) J Biomed Biotechnol 2006: 45716.
23. Cooper DN, Krawczak M, Polychronakos C, Tyler-Smith C, Kehrer-Sawatzki H (2013) Hum Genet 132: 1077-1130.
24. Dalpke A, Heeg K, Bartz H, Baetz A (2008) Immunobiology 213: 225-235.
25. Dong H, Lei J, Ding L, Wen Y, Ju H, Zhang X (2013) Chemical Reviews 113: 6207-6233.
26. Emery A, Sorrell DA, Lawrence S, Easthope E, Stockdale M, Jones DO, Zheleva D, Scaerou F, Glover DM (2011) J Biomol Screen 16: 925-931.
27. Fievet BT, Rodriguez J, Naganathan S, Lee C, Zeiser E, Ishidate T, Shirayama M, Grill S, Ahringer J (2013) Nat Cell Biol 15: 103-112.
28. Fiore AE, Fry A, Shay D, Gubareva L, Bresee JS, Uyeki TM (2011) MMWR Recomm Rep 60: 1-24.
29. Flowers LO, Johnson HM, Mujtaba MG, Ellis MR, Haider SM, Subramaniam PS (2004) J Immunol 172: 7510-7518.
30. Foged C (2012) Curr Top Med Chem 12: 97-107.
31. Freeley M, Bakos G, Davies A, Kelleher D, Long A, Dunican DJ (2010) J Biomol Screen 15: 541-555.
32. Galea G, Simpson JC (2013) Methods Cell Biol 118: 281-295.
33. Grienke U, Schmidtke M, von Grafenstein S, Kirchmair J, Liedl KR, Rollinger JM (2012) Nat Prod Rep 29: 11-36.
34. Gupta P, Cairns MJ, Saksena NK (2014) Virol J 11: 64.
35. Haasnoot PC, Cupac D, Berkhout B (2003) J Biomed Sci 10: 607-616.
36. Haney SA (2005) IDrugs 8: 997-1001.
37. Haney SA (2007) Pharmacogenomics 8: 1037-1049.
38. Hao L, Sakurai A, Watanabe T, Sorensen E, Nidom CA, Newton MA, Ahlquist P, Kawaoka Y (2008) Nature 454: 890-893.
39. Haraksingh RR, Snyder MP (2013) J Mol Biol 425: 3970-3977.
40. Heng BC, Aubel D, Fussenegger M (2013) Biotechnol Adv 31: 1676-1694.
41. Hong-Geller E, Micheva-Viteva SN (2010) Curr Drug Discov Technol 7: 86-94.
42. Ilyushina NA, Govorkova EA, Gray TE, Bovin NV, Webster RG (2008) PLoS Pathog 4: e1000043.
43. Janssen HL, Reesink HW, Lawitz EJ, Zeuzem S, Rodriguez-Torres M, Patel K, van der Meer AJ, Patick AK, Chen A, Zhou Y, Persson R, King BD, Kauppinen S, Levin AA, Hodges MR (2013) N Engl J Med 368: 1685-1694.
44. Jeong JH, Mok H, Oh YK, Park TG (2009) Bioconjug Chem 20: 5-14.
45. Karlas A, Machuy N, Shin Y, Pleissner KP, Artarini A, Heuer D, Becker D, Khalil H, Ogilvie LA, Hess S, Maurer AP, Muller E, Wolff T, Rudel T, Meyer TF (2010) Nature 463: 818-822.
46. Katano H, Sata T (2000) Jpn J Infect Dis 53: 137-155.
47. Kittler R, Pelletier L, Heninger AK, Slabicki M, Theis M, Miroslaw L, Poser I, Lawo S, Grabner H, Kozak K, Wagner J, Surendranath V, Richter C, Bowen W, Jackson AL, Habermann B, Hyman AA, Buchholz F (2007) Nat Cell Biol 9: 1401-1412.
48. Kobos R, Nagai M, Tsuda M, Merl MY, Saito T, Lae M, Mo Q, Olshen A, Lianoglou S, Leslie C, Ostrovnaya I, Antczak C, Djaballah H, Ladanyi M (2013) J Pathol 229: 743-754.
49. Konig R, Stertz S, Zhou Y, Inoue A, Hoffmann HH, Bhattacharyya S, Alamares JG, Tscherne DM, Ortigoza MB, Liang Y, Gao Q, Andrews SE, Bandyopadhyay S, De Jesus P, Tu BP, Pache L, Shih C, Orth A, Bonamy G, Miraglia L, Ideker T, Garcia-Sastre A, Young JA, Palese P, Shaw ML, Chanda SK (2010) Nature 463: 813-817.
50. Korth MJ, Tchitchek N, Benecke AG, Katze MG (2013) Semin Immunol 25: 228-239.
51. Krebs DL, Hilton DJ (2000) J Cell Sci 113(Pt 16): 2813-2819.
52. Krug RM, Aramini JM (2009) Trends Pharmacol Sci 30: 269-277.
53. Lares MR, Rossi JJ, Ouellet DL (2010) Trends Biotechnol 28: 570-579.
54. Laurent-Rolle M, Boer EF, Lubick KJ, Wolfinbarger JB, Carmody AB, Rockx B, Liu W, Ashour J, Shupert WL, Holbrook MR, Barrett AD, Mason PW, Bloom ME, Garcia-Sastre A, Khromykh AA, Best SM (2010) J Virol 84: 3503-3515.
55. Law GL, Tisoncik-Go J, Korth MJ, Katze MG (2013) Curr Opin Immunol 25: 588-592.
56. Luo M (2012) Adv Exp Med Biol 726: 201-221.
57. Malakhov MP, Aschenbrenner LM, Smee DF, Wandersee MK, Sidwell RW, Gubareva LV, Mishin VP, Hayden FG, Kim DH, Ing A, Campbell ER, Yu M, Fang F (2006) Antimicrob Agents Chemother 50: 1470-1479.
58. Martinez-Gil L, Alamares-Sapuay JG, Ramana Reddy MV, Goff PH, Premkumar Reddy E, Palese P (2013) Antiviral Res 100: 29-37.
59. Mastyugin V, McWhinnie E, Labow M, Buxton F (2005) Drug Discov Today Suppl: 43-49.
60. Matskevich AA, Jung JS, Schumann M, Cascallo M, Moelling K (2009) J Innate Immun 1: 389-394.
61. Matskevich AA, Moelling K (2007) J Gen Virol 88: 2627-2635.
62. Matsumoto S, Miyagishi M, Taira K (2007) Methods Mol Biol 360: 131-142.
63. Mazur S, Kozak K (2012) RNA Biol 9: 624-632.
64. Meliopoulos VA, Andersen LE, Birrer KF, Simpson KJ, Lowenthal JW, Bean AG, Stambas J, Stewart CR, Tompkins SM, van Beusechem VW, Fraser I, Mhlanga M, Barichievy S, Smith Q, Leake D, Karpilow J, Buck A, Jona G, Tripp RA (2012a) FASEB J 26: 1372-1386.
65. Meliopoulos VA, Andersen LE, Brooks P, Yan X, Bakre A, Coleman JK, Tompkins SM, Tripp RA (2012b) PLoS One 7: e37169.
66. Meyer D, Sielaff F, Hammami M, Bottcher-Friebertshauser E, Garten W, Steinmetzer T (2013) Biochem J 452: 331-343.
67. Micel LN, Tentler JJ, Smith PG, Eckhardt GS (2013) J Clin Oncol 31: 1231-1238.
68. Mohr S, Bakal C, Perrimon N (2010) Annu Rev Biochem 79: 37-64.
69. Munoz-Jordan JL, Laurent-Rolle M, Ashour J, Martinez-Sobrido L, Ashok M, Lipkin WI, Garcia-Sastre A (2005) J Virol 79: 8004-8013.
70. Nicholas J (2005) J Interferon Cytokine Res 25: 373-383.
71. Oshansky CM, Krunkosky TM, Barber J, Jones LP, Tripp RA (2009) Viral Immunol 22: 147-161.
72. Oshansky CM, Pickens JA, Bradley KC, Jones LP, Saavedra-Ebner GM, Barber JP, Crabtree JM, Steinhauer DA, Tompkins SM, Tripp RA (2011) PLoS One 6: e21183.
73. Parker JS, Roe SM, Barford D (2006) Cold Spring Harb Symp Quant Biol 71: 45-50.
74. Pauli EK, Schmolke M, Wolff T, Viemann D, Roth J, Bode JG, Ludwig S (2008) PLoS Pathog 4: e1000196.
75. Pazienza V, Vinciguerra M, Andriulli A, Mangia A (2010) J Gen Virol 91: 1678-1686.
76. Perrimon N, Mathey-Prevot B (2007) Genetics 175: 7-16.
77. Perrotti D, Neviani P (2013) Lancet Oncol 14: e229-e238.
78. Perwitasari O, Bakre A, Tompkins SM, Tripp RA (2013a) Pharmaceuticals (Basel) 6: 124-160.
79. Perwitasari O, Torrecilhas AC, Yan X, Johnson S, White C, Tompkins SM, Tripp RA (2013b) J Virol 87: 13775-13784.
80. Perwitasari O, Yan X, Johnson S, White C, Brooks P, Tompkins SM, Tripp RA (2013c) Antimicrob Agents Chemother 57: 475-483.
81. Pinto R, Herold S, Cakarova L, Hoegner K, Lohmeyer J, Planz O, Pleschka S (2011) Antiviral Res 92: 45-56.
82. Pleschka S, Wolff T, Ehrhardt C, Hobom G, Planz O, Rapp UR, Ludwig S (2001) Nat Cell Biol 3: 301-305.
83. Preziosi P (2011) Expert Opin Pharmacother 12: 1523-1549.
84. Prussia A, Thepchatri P, Snyder JP, Plemper RK (2011) Int J Mol Sci 12: 4027-4052.
85. Prusty BK, Karlas A, Meyer TF, Rudel T (2011) Methods Mol Biol 721: 383-395.
86. Rask-Andersen M, Almen MS, Schioth HB (2011) Nat Rev Drug Discov 10: 579-590.
87. Saladino R, Barontini M, Crucianelli M, Nencioni L, Sgarbanti R, Palamara AT (2010) Curr Med Chem 17: 2101-2140.
88. Shapira SD, Gat-Viks I, Shum BO, Dricot A, de Grace MM, Wu L, Gupta PB, Hao T, Silver SJ, Root DE, Hill DE, Regev A, Hacohen N (2009) Cell 139: 1255-1267.
89. Shaw ML, Palese P (2013) Orthomyxoviridae. In: Knipe DM, Howley PM (eds) Fields Virology. Lippincott Williams & Wilkins, Philadelphia, pp 1151-1185.
90. Shim MS, Kwon YJ (2010) FEBS J 277: 4814-4827.
91. Shin JH, Kim HU, Kim DI, Lee SY (2013) Biotechnol Adv 31: 925-935.
92. Song MM, Shuai K (1998) J Biol Chem 273: 35056-35062.
93. Southan C (2013) J Cheminform 5: 10.
94. Spielmann M, Klopocki E (2013) Curr Opin Genet Dev 23: 249-256.
95. Stertz S, Shaw ML (2011) Microbes Infect 13: 516-525.
96. Su WC, Chen YC, Tseng CH, Hsu PW, Tung KF, Jeng KS, Lai MM (2013) Proc Natl Acad Sci U S A 110: 17516-17521.
97. Sundaramurthy V, Barsacchi R, Chernykh M, Stoter M, Tomschke N, Bickle M, Kalaidzidis Y, Zerial M (2014) Nat Protoc 9: 474-490.
98. Theis M, Buchholz F (2011) Methods 53: 424-429.
99. Thomas S, Bonchev D (2010) Hum Genomics 4: 353-360.
100. Tripp RA, Mejias A, Ramilo O (2013) Curr Top Microbiol Immunol 372: 193-209.
101. Tripp RA, Tompkins SM (2009) Methods Mol Biol 555: 43-61.
102. Unutmaz D, KewalRamani VN, Littman DR (1998) Semin Immunol 10: 225-236.
103. Varga ZT, Ramos I, Hai R, Schmolke M, Garcia-Sastre A, Fernandez-Sesma A, Palese P (2011) PLoS Pathog 7: e1002067.
104. Wang J, Xie X (2007) Acta Pharmacol Sin 28: 1698-1704.
105. Wang JF, Chou KC (2012) Mini Rev Med Chem 12: 971-978.
106. Ward SE, Kim HS, Komurov K, Mendiratta S, Tsai PL, Schmolke M, Satterly N, Manicassamy B, Forst CV, Roth MG, Garcia-Sastre A, Blazewska KM, McKenna CE, Fontoura BM, White MA (2012) PLoS One 7: e39284.
107. Watanabe K, Takizawa N, Katoh M, Hoshida K, Kobayashi N, Nagata K (2001) Virus Res 77: 31-42.
108. Watanabe T, Watanabe S, Kawaoka Y (2010) Cell Host Microbe 7: 427-439.
109. Wei H, Wang S, Chen Q, Chen Y, Chi X, Zhang L, Huang S, Gao GF, Chen JL (2014) PLoS Pathog 10: e1003845.
110. Zhang XD (2007) Genomics 89: 552-561.