-
1
-
-
0021403731
-
Computer model for glucose-limited growth of a single cell of Escherichia coli B/r-A
-
Domach M.M., Leung S.K., Cahn R.E., Cocks G.G., Shuler M.L. Computer model for glucose-limited growth of a single cell of Escherichia coli B/r-A. Biotechnol Bioeng 1984, 26(3):203-216.
-
(1984)
Biotechnol Bioeng
, vol.26
, Issue.3
, pp. 203-216
-
-
Domach, M.M.1
Leung, S.K.2
Cahn, R.E.3
Cocks, G.G.4
Shuler, M.L.5
-
2
-
-
0024842144
-
Metabolic dynamics in the human red cell. Part I-A comprehensive kinetic model
-
Joshi A., Palsson B.O. Metabolic dynamics in the human red cell. Part I-A comprehensive kinetic model. J Theor Biol 1989, 141(4):515-528.
-
(1989)
J Theor Biol
, vol.141
, Issue.4
, pp. 515-528
-
-
Joshi, A.1
Palsson, B.O.2
-
3
-
-
0024799182
-
Metabolic dynamics in the human red cell. Part II-Interactions with the environment
-
Joshi A., Palsson B.O. Metabolic dynamics in the human red cell. Part II-Interactions with the environment. J Theor Biol 1989, 141(4):529-545.
-
(1989)
J Theor Biol
, vol.141
, Issue.4
, pp. 529-545
-
-
Joshi, A.1
Palsson, B.O.2
-
4
-
-
0025095641
-
Metabolic dynamics in the human red cell. Part III-Metabolic reaction rates
-
Joshi A., Palsson B.O. Metabolic dynamics in the human red cell. Part III-Metabolic reaction rates. J Theor Biol 1990, 142(1):41-68.
-
(1990)
J Theor Biol
, vol.142
, Issue.1
, pp. 41-68
-
-
Joshi, A.1
Palsson, B.O.2
-
5
-
-
0025166450
-
Metabolic dynamics in the human red cell. Part IV-Data prediction and some model computations
-
Joshi A., Palsson B.O. Metabolic dynamics in the human red cell. Part IV-Data prediction and some model computations. J Theor Biol 1990, 142(1):69-85.
-
(1990)
J Theor Biol
, vol.142
, Issue.1
, pp. 69-85
-
-
Joshi, A.1
Palsson, B.O.2
-
7
-
-
0029028963
-
Circuit simulation of genetic networks
-
McAdams H.H., Shapiro L. Circuit simulation of genetic networks. Science 1995, 269(5224):650-656.
-
(1995)
Science
, vol.269
, Issue.5224
, pp. 650-656
-
-
McAdams, H.H.1
Shapiro, L.2
-
9
-
-
0024278202
-
Escherichia coil growth dynamics: a three-pool biochemically based description
-
Joshi A., Palsson B.O. Escherichia coil growth dynamics: a three-pool biochemically based description. Biotechnol Bioeng 1988, 31(2):102-116.
-
(1988)
Biotechnol Bioeng
, vol.31
, Issue.2
, pp. 102-116
-
-
Joshi, A.1
Palsson, B.O.2
-
10
-
-
0023331571
-
On the dynamic order of structured Escherichia coli growth models
-
Palsson B.O., Joshi A. On the dynamic order of structured Escherichia coli growth models. Biotechnol Bioeng 1987, 29(6):789-792.
-
(1987)
Biotechnol Bioeng
, vol.29
, Issue.6
, pp. 789-792
-
-
Palsson, B.O.1
Joshi, A.2
-
11
-
-
0028108519
-
Metabolic flux balancing-basic concepts, scientific and practical use
-
Varma A., Palsson B.O. Metabolic flux balancing-basic concepts, scientific and practical use. Bio-Technology 1994, 12(10):994-998.
-
(1994)
Bio-Technology
, vol.12
, Issue.10
, pp. 994-998
-
-
Varma, A.1
Palsson, B.O.2
-
12
-
-
0034625143
-
The Escherichia coli mg1655 in silico metabolic genotype: its definition, characteristics, and capabilities
-
Edwards J.S., Palsson B.O. The Escherichia coli mg1655 in silico metabolic genotype: its definition, characteristics, and capabilities. Proc Natl Acad Sci U S A 2000, 97(10):5528-5533.
-
(2000)
Proc Natl Acad Sci U S A
, vol.97
, Issue.10
, pp. 5528-5533
-
-
Edwards, J.S.1
Palsson, B.O.2
-
13
-
-
0035125986
-
In silico predictions of Escherichia coli metabolic capabilities are consistent with experimental data
-
Edwards J.S., Ibarra R.U., Palsson B.O. In silico predictions of Escherichia coli metabolic capabilities are consistent with experimental data. Nat Biotechnol 2001, 19(2):125-130.
-
(2001)
Nat Biotechnol
, vol.19
, Issue.2
, pp. 125-130
-
-
Edwards, J.S.1
Ibarra, R.U.2
Palsson, B.O.3
-
14
-
-
0037406843
-
Thirteen years of building constraint-based in silico models of Escherichia coli
-
Reed J.L., Palsson B.O. Thirteen years of building constraint-based in silico models of Escherichia coli. J Bacteriol 2003, 185(9):2692-2699.
-
(2003)
J Bacteriol
, vol.185
, Issue.9
, pp. 2692-2699
-
-
Reed, J.L.1
Palsson, B.O.2
-
15
-
-
84864843180
-
In silico method for modelling metabolism and gene product expression at genome scale
-
Lerman J.A., Hyduke D.R., Latif H., Portnoy V.A., Lewis N.E., Orth J.D., Schrimpe-Rutledge A.C., Smith R.D., Adkins J.N., Zengler K., Palsson B.O. In silico method for modelling metabolism and gene product expression at genome scale. Nat Commun 2012, 3:929.
-
(2012)
Nat Commun
, vol.3
, pp. 929
-
-
Lerman, J.A.1
Hyduke, D.R.2
Latif, H.3
Portnoy, V.A.4
Lewis, N.E.5
Orth, J.D.6
Schrimpe-Rutledge, A.C.7
Smith, R.D.8
Adkins, J.N.9
Zengler, K.10
Palsson, B.O.11
-
16
-
-
84866975246
-
Multiscale modeling of metabolism and macromolecular synthesis in E. coli and its application to the evolution of codon usage
-
Thiele I., Fleming R.M., Que R., Bordbar A., Diep D., Palsson B.O. Multiscale modeling of metabolism and macromolecular synthesis in E. coli and its application to the evolution of codon usage. PLoS ONE 2012, 7(9):e45635.
-
(2012)
PLoS ONE
, vol.7
, Issue.9
, pp. e45635
-
-
Thiele, I.1
Fleming, R.M.2
Que, R.3
Bordbar, A.4
Diep, D.5
Palsson, B.O.6
-
17
-
-
84885367114
-
Genome-scale models of metabolism and gene expression extend and refine growth phenotype prediction
-
O'Brien E.J., Lerman J.A., Chang R.L., Hyduke D.R., Palsson B.O. Genome-scale models of metabolism and gene expression extend and refine growth phenotype prediction. Mol Syst Biol 2013, 9:693.
-
(2013)
Mol Syst Biol
, vol.9
, pp. 693
-
-
O'Brien, E.J.1
Lerman, J.A.2
Chang, R.L.3
Hyduke, D.R.4
Palsson, B.O.5
-
18
-
-
84907272917
-
Reconstruction and modeling protein translocation and compartmentalization in Escherichia coli at the genome-scale
-
Liu J.K., O'Brien E.J., Lerman J.A., Zengler K., Palsson B.O., Feist A.M. Reconstruction and modeling protein translocation and compartmentalization in Escherichia coli at the genome-scale. BMC Syst Biol 2014, 8(1):110.
-
(2014)
BMC Syst Biol
, vol.8
, Issue.1
, pp. 110
-
-
Liu, J.K.1
O'Brien, E.J.2
Lerman, J.A.3
Zengler, K.4
Palsson, B.O.5
Feist, A.M.6
-
19
-
-
84864258618
-
A whole-cell computational model predicts phenotype from genotype
-
Karr J.R., Sanghvi J.C., Macklin D.N., Gutschow M.V., Jacobs J.M., Bolival B., Assad-Garcia N., Glass J.I., Covert M.W. A whole-cell computational model predicts phenotype from genotype. Cell 2012, 150(2):389-401.
-
(2012)
Cell
, vol.150
, Issue.2
, pp. 389-401
-
-
Karr, J.R.1
Sanghvi, J.C.2
Macklin, D.N.3
Gutschow, M.V.4
Jacobs, J.M.5
Bolival, B.6
Assad-Garcia, N.7
Glass, J.I.8
Covert, M.W.9
-
20
-
-
77952774546
-
Functional characterization of alternate optimal solutions of Escherichia coli's transcriptional and translational machinery
-
Thiele I., Fleming R.M., Bordbar A., Schellenberger J., Palsson B.O. Functional characterization of alternate optimal solutions of Escherichia coli's transcriptional and translational machinery. Biophys J 2010, 98(10):2072-2081.
-
(2010)
Biophys J
, vol.98
, Issue.10
, pp. 2072-2081
-
-
Thiele, I.1
Fleming, R.M.2
Bordbar, A.3
Schellenberger, J.4
Palsson, B.O.5
-
21
-
-
84877119088
-
Genome-scale modeling of the protein secretory machinery in yeast
-
Feizi A., Osterlund T., Petranovic D., Bordel S., Nielsen J. Genome-scale modeling of the protein secretory machinery in yeast. PLOS ONE 2013, 8(5):e63284.
-
(2013)
PLOS ONE
, vol.8
, Issue.5
, pp. e63284
-
-
Feizi, A.1
Osterlund, T.2
Petranovic, D.3
Bordel, S.4
Nielsen, J.5
-
22
-
-
84901306814
-
Systematic evaluation of methods for integration of transcriptomic data into constraint-based models of metabolism
-
Machado D., Herrgard M. Systematic evaluation of methods for integration of transcriptomic data into constraint-based models of metabolism. PLOS Comput Biol 2014, 10(4):e1003580.
-
(2014)
PLOS Comput Biol
, vol.10
, Issue.4
, pp. e1003580
-
-
Machado, D.1
Herrgard, M.2
-
23
-
-
84905405275
-
A system-level model for the microbial regulatory genome
-
Brooks A.N., Reiss D.J., Allard A., Wu W.J., Salvanha D.M., Plaisier C.L., Chandrasekaran S., Pan M., Kaur A., Baliga N.S. A system-level model for the microbial regulatory genome. Mol Syst Biol 2014, 10(7):740.
-
(2014)
Mol Syst Biol
, vol.10
, Issue.7
, pp. 740
-
-
Brooks, A.N.1
Reiss, D.J.2
Allard, A.3
Wu, W.J.4
Salvanha, D.M.5
Plaisier, C.L.6
Chandrasekaran, S.7
Pan, M.8
Kaur, A.9
Baliga, N.S.10
-
24
-
-
84905400331
-
An integrative, multi-scale, genome-wide model reveals the phenotypic landscape of Escherichia coli
-
Carrera J., Estrela R., Luo J., Rai N., Tsoukalas A., Tagkopoulos I. An integrative, multi-scale, genome-wide model reveals the phenotypic landscape of Escherichia coli. Mol Syst Biol 2014, 10(7):735.
-
(2014)
Mol Syst Biol
, vol.10
, Issue.7
, pp. 735
-
-
Carrera, J.1
Estrela, R.2
Luo, J.3
Rai, N.4
Tsoukalas, A.5
Tagkopoulos, I.6
-
25
-
-
78049255973
-
Probabilistic integrative modeling of genome-scale metabolic and regulatory networks in Escherichia coli and mycobacterium tuberculosis
-
Chandrasekaran S., Price N.D. Probabilistic integrative modeling of genome-scale metabolic and regulatory networks in Escherichia coli and mycobacterium tuberculosis. Proc Natl Acad Sci U S A 2010, 107(41):17845-17850.
-
(2010)
Proc Natl Acad Sci U S A
, vol.107
, Issue.41
, pp. 17845-17850
-
-
Chandrasekaran, S.1
Price, N.D.2
-
26
-
-
23144432213
-
Optimality and evolutionary tuning of the expression level of a protein
-
Dekel E., Alon U. Optimality and evolutionary tuning of the expression level of a protein. Nature 2005, 436(7050):588-592.
-
(2005)
Nature
, vol.436
, Issue.7050
, pp. 588-592
-
-
Dekel, E.1
Alon, U.2
-
27
-
-
77952886804
-
The biomass objective function
-
Feist A.M., Palsson B.O. The biomass objective function. Curr Opin Microbiol 2010, 13(3):344-349.
-
(2010)
Curr Opin Microbiol
, vol.13
, Issue.3
, pp. 344-349
-
-
Feist, A.M.1
Palsson, B.O.2
-
28
-
-
63549148162
-
Genome-scale reconstruction of Escherichia coli's transcriptional and translational machinery: a knowledge base, its mathematical formulation, and its functional characterization
-
Thiele I., Jamshidi N., Fleming R.M., Palsson B.O. Genome-scale reconstruction of Escherichia coli's transcriptional and translational machinery: a knowledge base, its mathematical formulation, and its functional characterization. PLoS Comput Biol 2009, 5(3):e1000312.
-
(2009)
PLoS Comput Biol
, vol.5
, Issue.3
, pp. e1000312
-
-
Thiele, I.1
Jamshidi, N.2
Fleming, R.M.3
Palsson, B.O.4
-
29
-
-
84907334654
-
Emergence of robust growth laws from optimal regulation of ribosome synthesis
-
Scott M., Klumpp S., Mateescu E.M., Hwa T. Emergence of robust growth laws from optimal regulation of ribosome synthesis. Mol Syst Biol 2014, 10:747.
-
(2014)
Mol Syst Biol
, vol.10
, pp. 747
-
-
Scott, M.1
Klumpp, S.2
Mateescu, E.M.3
Hwa, T.4
-
30
-
-
78449268845
-
Interdependence of cell growth and gene expression: origins and consequences
-
Scott M., Gunderson C.W., Mateescu E.M., Zhang Z., Hwa T. Interdependence of cell growth and gene expression: origins and consequences. Science 2010, 330(6007):1099-1102.
-
(2010)
Science
, vol.330
, Issue.6007
, pp. 1099-1102
-
-
Scott, M.1
Gunderson, C.W.2
Mateescu, E.M.3
Zhang, Z.4
Hwa, T.5
-
31
-
-
84860487758
-
Multidimensional optimality of microbial metabolism
-
Schuetz R., Zamboni N., Zampieri M., Heinemann M., Sauer U. Multidimensional optimality of microbial metabolism. Science 2012, 336(6081):601-604.
-
(2012)
Science
, vol.336
, Issue.6081
, pp. 601-604
-
-
Schuetz, R.1
Zamboni, N.2
Zampieri, M.3
Heinemann, M.4
Sauer, U.5
-
32
-
-
84878966835
-
Glycolytic strategy as a tradeoff between energy yield and protein cost
-
Flamholz A., Noor E., Bar-Even A., Liebermeister W., Milo R. Glycolytic strategy as a tradeoff between energy yield and protein cost. Proc Natl Acad Sci U S A 2013, 110(24):10039-10044.
-
(2013)
Proc Natl Acad Sci U S A
, vol.110
, Issue.24
, pp. 10039-10044
-
-
Flamholz, A.1
Noor, E.2
Bar-Even, A.3
Liebermeister, W.4
Milo, R.5
-
33
-
-
78651335279
-
Systematizing the generation of missing metabolic knowledge
-
Orth J.D., Palsson B.O. Systematizing the generation of missing metabolic knowledge. Biotechnol Bioeng 2010, 107(3):403-412.
-
(2010)
Biotechnol Bioeng
, vol.107
, Issue.3
, pp. 403-412
-
-
Orth, J.D.1
Palsson, B.O.2
-
34
-
-
84885773167
-
Molecular crowding limits translation and cell growth
-
Klumpp S., Scott M., Pedersen S., Hwa T. Molecular crowding limits translation and cell growth. Proc Natl Acad Sci U S A 2013, 110(42):16754-16759.
-
(2013)
Proc Natl Acad Sci U S A
, vol.110
, Issue.42
, pp. 16754-16759
-
-
Klumpp, S.1
Scott, M.2
Pedersen, S.3
Hwa, T.4
-
35
-
-
83255164895
-
Selective ribosome profiling reveals the cotranslational chaperone action of trigger factor in vivo
-
Oh E., Becker A.H., Sandikci A., Huber D., Chaba R., Gloge F., Nichols R.J., Typas A., Gross C.A., Kramer G., Weissman J.S., et al. Selective ribosome profiling reveals the cotranslational chaperone action of trigger factor in vivo. Cell 2011, 147(6):1295-1308.
-
(2011)
Cell
, vol.147
, Issue.6
, pp. 1295-1308
-
-
Oh, E.1
Becker, A.H.2
Sandikci, A.3
Huber, D.4
Chaba, R.5
Gloge, F.6
Nichols, R.J.7
Typas, A.8
Gross, C.A.9
Kramer, G.10
Weissman, J.S.11
-
36
-
-
77955516282
-
Microbial metalloproteomes are largely uncharacterized
-
Cvetkovic A., Menon A.L., Thorgersen M.P., Scott J.W., Poole F.L., Jenney F.E., Lancaster W.A., Praissman J.L., Shanmukh S., Vaccaro B.J., Trauger S.A., et al. Microbial metalloproteomes are largely uncharacterized. Nature 2010, 466(7307):779-782.
-
(2010)
Nature
, vol.466
, Issue.7307
, pp. 779-782
-
-
Cvetkovic, A.1
Menon, A.L.2
Thorgersen, M.P.3
Scott, J.W.4
Poole, F.L.5
Jenney, F.E.6
Lancaster, W.A.7
Praissman, J.L.8
Shanmukh, S.9
Vaccaro, B.J.10
Trauger, S.A.11
-
37
-
-
71149108056
-
Correlation of mrna and protein in complex biological samples
-
Maier T., Guell M., Serrano L. Correlation of mrna and protein in complex biological samples. FEBS Lett 2009, 583(24):3966-3973.
-
(2009)
FEBS Lett
, vol.583
, Issue.24
, pp. 3966-3973
-
-
Maier, T.1
Guell, M.2
Serrano, L.3
-
38
-
-
84858439862
-
Insights into the regulation of protein abundance from proteomic and transcriptomic analyses
-
Vogel C., Marcotte E.M. Insights into the regulation of protein abundance from proteomic and transcriptomic analyses. Nat Rev Genet 2012, 13(4):227-232.
-
(2012)
Nat Rev Genet
, vol.13
, Issue.4
, pp. 227-232
-
-
Vogel, C.1
Marcotte, E.M.2
-
39
-
-
79956322553
-
Global quantification of mammalian gene expression control
-
Schwanhausser B., Busse D., Li N., Dittmar G., Schuchhardt J., Wolf J., Chen W., Selbach M. Global quantification of mammalian gene expression control. Nature 2011, 473(7347):337-342.
-
(2011)
Nature
, vol.473
, Issue.7347
, pp. 337-342
-
-
Schwanhausser, B.1
Busse, D.2
Li, N.3
Dittmar, G.4
Schuchhardt, J.5
Wolf, J.6
Chen, W.7
Selbach, M.8
-
40
-
-
73449149110
-
Invariant distribution of promoter activities in Escherichia coli
-
Zaslaver A., Kaplan S., Bren A., Jinich A., Mayo A., Dekel E., Alon U., Itzkovitz S. Invariant distribution of promoter activities in Escherichia coli. PLoS Comput Biol 2009, 5(10):e1000545.
-
(2009)
PLoS Comput Biol
, vol.5
, Issue.10
, pp. e1000545
-
-
Zaslaver, A.1
Kaplan, S.2
Bren, A.3
Jinich, A.4
Mayo, A.5
Dekel, E.6
Alon, U.7
Itzkovitz, S.8
-
41
-
-
84889244978
-
Promoters maintain their relative activity levels under different growth conditions
-
Keren L., Zackay O., Lotan-Pompan M., Barenholz U., Dekel E., Sasson V., Aidelberg G., Bren A., Zeevi D., Weinberger A., Alon U., et al. Promoters maintain their relative activity levels under different growth conditions. Mol Syst Biol 2013, 9:701.
-
(2013)
Mol Syst Biol
, vol.9
, pp. 701
-
-
Keren, L.1
Zackay, O.2
Lotan-Pompan, M.3
Barenholz, U.4
Dekel, E.5
Sasson, V.6
Aidelberg, G.7
Bren, A.8
Zeevi, D.9
Weinberger, A.10
Alon, U.11
-
42
-
-
84899550455
-
Quantifying absolute protein synthesis rates reveals principles underlying allocation of cellular resources
-
Li G.W., Burkhardt D., Gross C., Weissman J.S. Quantifying absolute protein synthesis rates reveals principles underlying allocation of cellular resources. Cell 2014, 157(3):624-635.
-
(2014)
Cell
, vol.157
, Issue.3
, pp. 624-635
-
-
Li, G.W.1
Burkhardt, D.2
Gross, C.3
Weissman, J.S.4
-
43
-
-
84881087942
-
Escherichia coli achieves faster growth by increasing catalytic and translation rates of proteins
-
Valgepea K., Adamberg K., Seiman A., Vilu R. Escherichia coli achieves faster growth by increasing catalytic and translation rates of proteins. Mol Biosyst 2013, 9(9):2344-2358.
-
(2013)
Mol Biosyst
, vol.9
, Issue.9
, pp. 2344-2358
-
-
Valgepea, K.1
Adamberg, K.2
Seiman, A.3
Vilu, R.4
-
44
-
-
84879345901
-
Rate-limiting steps in yeast protein translation
-
Shah P., Ding Y., Niemczyk M., Kudla G., Plotkin J.B. Rate-limiting steps in yeast protein translation. Cell 2013, 153(7):1589-1601.
-
(2013)
Cell
, vol.153
, Issue.7
, pp. 1589-1601
-
-
Shah, P.1
Ding, Y.2
Niemczyk, M.3
Kudla, G.4
Plotkin, J.B.5
-
45
-
-
84894318608
-
Ribosome profiling: new views of translation, from single codons to genome scale
-
Ingolia N.T. Ribosome profiling: new views of translation, from single codons to genome scale. Nat Rev Genet 2014, 15(3):205-213.
-
(2014)
Nat Rev Genet
, vol.15
, Issue.3
, pp. 205-213
-
-
Ingolia, N.T.1
-
46
-
-
84882777421
-
Composability of regulatory sequences controlling transcription and translation in Escherichia coli
-
Kosuri S., Goodman D.B., Cambray G., Mutalik V.K., Gao Y., Arkin A.P., Endy D., Church G.M. Composability of regulatory sequences controlling transcription and translation in Escherichia coli. Proc Natl Acad Sci U S A 2013, 110(34):14024-14029.
-
(2013)
Proc Natl Acad Sci U S A
, vol.110
, Issue.34
, pp. 14024-14029
-
-
Kosuri, S.1
Goodman, D.B.2
Cambray, G.3
Mutalik, V.K.4
Gao, Y.5
Arkin, A.P.6
Endy, D.7
Church, G.M.8
-
47
-
-
84875725658
-
Quantitative estimation of activity and quality for collections of functional genetic elements
-
Mutalik V.K., Guimaraes J.C., Cambray G., Mai Q.A., Christoffersen M.J., Martin L., Yu A., Lam C., Rodriguez C., Bennett G., Keasling J.D., et al. Quantitative estimation of activity and quality for collections of functional genetic elements. Nat Methods 2013, 10(4):347-353.
-
(2013)
Nat Methods
, vol.10
, Issue.4
, pp. 347-353
-
-
Mutalik, V.K.1
Guimaraes, J.C.2
Cambray, G.3
Mai, Q.A.4
Christoffersen, M.J.5
Martin, L.6
Yu, A.7
Lam, C.8
Rodriguez, C.9
Bennett, G.10
Keasling, J.D.11
-
48
-
-
84877294439
-
Measurement and modeling of intrinsic transcription terminators
-
Cambray G., Guimaraes J.C., Mutalik V.K., Lam C., Mai Q.A., Thimmaiah T., Carothers J.M., Arkin A.P., Endy D. Measurement and modeling of intrinsic transcription terminators. Nucleic Acids Res 2013, 41(9):5139-5148.
-
(2013)
Nucleic Acids Res
, vol.41
, Issue.9
, pp. 5139-5148
-
-
Cambray, G.1
Guimaraes, J.C.2
Mutalik, V.K.3
Lam, C.4
Mai, Q.A.5
Thimmaiah, T.6
Carothers, J.M.7
Arkin, A.P.8
Endy, D.9
-
49
-
-
84879681227
-
Characterization of 582 natural and synthetic terminators and quantification of their design constraints
-
Chen Y.J., Liu P., Nielsen A.A., Brophy J.A., Clancy K., Peterson T., Voigt C.A. Characterization of 582 natural and synthetic terminators and quantification of their design constraints. Nat Methods 2013, 10(7):659-664.
-
(2013)
Nat Methods
, vol.10
, Issue.7
, pp. 659-664
-
-
Chen, Y.J.1
Liu, P.2
Nielsen, A.A.3
Brophy, J.A.4
Clancy, K.5
Peterson, T.6
Voigt, C.A.7
-
50
-
-
84861131751
-
Testing biochemistry revisited: how in vivo metabolism can be understood from in vitro enzyme kinetics
-
van Eunen K., Kiewiet J.A., Westerhoff H.V., Bakker B.M. Testing biochemistry revisited: how in vivo metabolism can be understood from in vitro enzyme kinetics. PLoS Comput Biol 2012, 8(4):e1002483.
-
(2012)
PLoS Comput Biol
, vol.8
, Issue.4
, pp. e1002483
-
-
van Eunen, K.1
Kiewiet, J.A.2
Westerhoff, H.V.3
Bakker, B.M.4
-
51
-
-
84868194895
-
Why in vivo may not equal in vitro-new effectors revealed by measurement of enzymatic activities under the same in vivo-like assay conditions
-
Garcia-Contreras R., Vos P., Westerhoff H.V., Boogerd F.C. Why in vivo may not equal in vitro-new effectors revealed by measurement of enzymatic activities under the same in vivo-like assay conditions. FEBS J 2012, 279(22):4145-4159.
-
(2012)
FEBS J
, vol.279
, Issue.22
, pp. 4145-4159
-
-
Garcia-Contreras, R.1
Vos, P.2
Westerhoff, H.V.3
Boogerd, F.C.4
-
52
-
-
79958097953
-
The moderately efficient enzyme: evolutionary and physicochemical trends shaping enzyme parameters
-
Bar-Even A., Noor E., Savir Y., Liebermeister W., Davidi D., Tawfik D.S., Milo R. The moderately efficient enzyme: evolutionary and physicochemical trends shaping enzyme parameters. Biochemistry 2011, 50(21):4402-4410.
-
(2011)
Biochemistry
, vol.50
, Issue.21
, pp. 4402-4410
-
-
Bar-Even, A.1
Noor, E.2
Savir, Y.3
Liebermeister, W.4
Davidi, D.5
Tawfik, D.S.6
Milo, R.7
-
53
-
-
84888883268
-
Accelerated discovery via a whole-cell model
-
Sanghvi J.C., Regot S., Carrasco S., Karr J.R., Gutschow M.V., Bolival B., Covert M.W. Accelerated discovery via a whole-cell model. Nat Methods 2013, 10(12):1192-1195.
-
(2013)
Nat Methods
, vol.10
, Issue.12
, pp. 1192-1195
-
-
Sanghvi, J.C.1
Regot, S.2
Carrasco, S.3
Karr, J.R.4
Gutschow, M.V.5
Bolival, B.6
Covert, M.W.7
-
54
-
-
84873053978
-
Mechanistic analysis of multi-omics datasets to generate kinetic parameters for constraint-based metabolic models
-
Cotten C., Reed J.L. Mechanistic analysis of multi-omics datasets to generate kinetic parameters for constraint-based metabolic models. BMC Bioinform 2013, 14(32.).
-
(2013)
BMC Bioinform
, vol.14
, Issue.32
-
-
Cotten, C.1
Reed, J.L.2
-
55
-
-
84904317199
-
A kinetic model of Escherichia coli core metabolism satisfying multiple sets of mutant flux data
-
Khodayari A., Zomorrodi A.R., Liao J.C., Maranas C.D. A kinetic model of Escherichia coli core metabolism satisfying multiple sets of mutant flux data. Metab Eng 2014, 50-62.
-
(2014)
Metab Eng
, pp. 50-62
-
-
Khodayari, A.1
Zomorrodi, A.R.2
Liao, J.C.3
Maranas, C.D.4
-
56
-
-
84901297224
-
Determining the control circuitry of redox metabolism at the genome-scale
-
Federowicz S., Kim D., Ebrahim A., Lerman J., Nagarajan H., Cho B.K., Zengler K., Palsson B. Determining the control circuitry of redox metabolism at the genome-scale. PLoS Genet 2014, 10(4):e1004264.
-
(2014)
PLoS Genet
, vol.10
, Issue.4
, pp. e1004264
-
-
Federowicz, S.1
Kim, D.2
Ebrahim, A.3
Lerman, J.4
Nagarajan, H.5
Cho, B.K.6
Zengler, K.7
Palsson, B.8
-
57
-
-
84905403664
-
Minimal metabolic pathway structure is consistent with associated biomolecular interactions
-
Bordbar A., Nagarajan H., Lewis N.E., Latif H., Ebrahim A., Federowicz S., Schellenberger J., Palsson B.O. Minimal metabolic pathway structure is consistent with associated biomolecular interactions. Mol Syst Biol 2014, 10(7):737.
-
(2014)
Mol Syst Biol
, vol.10
, Issue.7
, pp. 737
-
-
Bordbar, A.1
Nagarajan, H.2
Lewis, N.E.3
Latif, H.4
Ebrahim, A.5
Federowicz, S.6
Schellenberger, J.7
Palsson, B.O.8
-
58
-
-
84876566095
-
Indirect and suboptimal control of gene expression is widespread in bacteria
-
Price M.N., Deutschbauer A.M., Skerker J.M., Wetmore K.M., Ruths T., Mar J.S., Kuehl J.V., Shao W., Arkin A.P. Indirect and suboptimal control of gene expression is widespread in bacteria. Mol Syst Biol 2013, 9:660.
-
(2013)
Mol Syst Biol
, vol.9
, pp. 660
-
-
Price, M.N.1
Deutschbauer, A.M.2
Skerker, J.M.3
Wetmore, K.M.4
Ruths, T.5
Mar, J.S.6
Kuehl, J.V.7
Shao, W.8
Arkin, A.P.9
-
59
-
-
67650376275
-
Adaptive prediction of environmental changes by microorganisms
-
Mitchell A., Romano G.H., Groisman B., Yona A., Dekel E., Kupiec M., Dahan O., Pilpel Y. Adaptive prediction of environmental changes by microorganisms. Nature 2009, 460(7252):220-224.
-
(2009)
Nature
, vol.460
, Issue.7252
, pp. 220-224
-
-
Mitchell, A.1
Romano, G.H.2
Groisman, B.3
Yona, A.4
Dekel, E.5
Kupiec, M.6
Dahan, O.7
Pilpel, Y.8
-
60
-
-
84893765873
-
Different levels of catabolite repression optimize growth in stable and variable environments
-
New A.M., Cerulus B., Govers S.K., Perez-Samper G., Zhu B., Boogmans S., Xavier J.B., Verstrepen K.J. Different levels of catabolite repression optimize growth in stable and variable environments. PLoS Biol 2014, 12(1):e1001764.
-
(2014)
PLoS Biol
, vol.12
, Issue.1
, pp. e1001764
-
-
New, A.M.1
Cerulus, B.2
Govers, S.K.3
Perez-Samper, G.4
Zhu, B.5
Boogmans, S.6
Xavier, J.B.7
Verstrepen, K.J.8
-
61
-
-
84891553151
-
Global dynamic optimization approach to predict activation in metabolic pathways
-
de Hijas-Liste G.M., Klipp E., Balsa-Canto E., Banga J.R. Global dynamic optimization approach to predict activation in metabolic pathways. BMC Syst Biol 2014, 8(1.).
-
(2014)
BMC Syst Biol
, vol.8
, Issue.1
-
-
de Hijas-Liste, G.M.1
Klipp, E.2
Balsa-Canto, E.3
Banga, J.R.4
-
62
-
-
84890818651
-
Optimal control of gene expression for fast proteome adaptation to environmental change
-
Pavlov M.Y., Ehrenberg M. Optimal control of gene expression for fast proteome adaptation to environmental change. Proc Natl Acad Sci U S A 2013, 110(51):20527-20532.
-
(2013)
Proc Natl Acad Sci U S A
, vol.110
, Issue.51
, pp. 20527-20532
-
-
Pavlov, M.Y.1
Ehrenberg, M.2
-
63
-
-
84883288679
-
Dynamic optimization identifies optimal programmes for pathway regulation in prokaryotes
-
Bartl M., Kotzing M., Schuster S., Li P., Kaleta C. Dynamic optimization identifies optimal programmes for pathway regulation in prokaryotes. Nat Commun 2013, 4(2243.).
-
(2013)
Nat Commun
, vol.4
, Issue.2243
-
-
Bartl, M.1
Kotzing, M.2
Schuster, S.3
Li, P.4
Kaleta, C.5
-
64
-
-
84903287056
-
Genetics. Predicting microbial growth
-
Monk J., Palsson B.O. Genetics. Predicting microbial growth. Science 2014, 344(6191):1448-1449.
-
(2014)
Science
, vol.344
, Issue.6191
, pp. 1448-1449
-
-
Monk, J.1
Palsson, B.O.2
-
65
-
-
84899047521
-
Coordination of microbial metabolism
-
Chubukov V., Gerosa L., Kochanowski K., Sauer U. Coordination of microbial metabolism. Nat Rev Microbiol 2014, 12(5):327-340.
-
(2014)
Nat Rev Microbiol
, vol.12
, Issue.5
, pp. 327-340
-
-
Chubukov, V.1
Gerosa, L.2
Kochanowski, K.3
Sauer, U.4
-
66
-
-
58149527756
-
Growth-rate-dependent partitioning of rna polymerases in bacteria
-
Klumpp S., Hwa T. Growth-rate-dependent partitioning of rna polymerases in bacteria. Proc Natl Acad Sci U S A 2008, 105(51):20245-20250.
-
(2008)
Proc Natl Acad Sci U S A
, vol.105
, Issue.51
, pp. 20245-20250
-
-
Klumpp, S.1
Hwa, T.2
-
67
-
-
72249097352
-
Growth rate-dependent global effects on gene expression in bacteria
-
Klumpp S., Zhang Z.G., Hwa T. Growth rate-dependent global effects on gene expression in bacteria. Cell 2009, 139(7):1366-1375.
-
(2009)
Cell
, vol.139
, Issue.7
, pp. 1366-1375
-
-
Klumpp, S.1
Zhang, Z.G.2
Hwa, T.3
-
68
-
-
84881663369
-
Coordination of bacterial proteome with metabolism by cyclic amp signalling
-
You C., Okano H., Hui S., Zhang Z., Kim M., Gunderson C.W., Wang Y.P., Lenz P., Yan D., Hwa T. Coordination of bacterial proteome with metabolism by cyclic amp signalling. Nature 2013, 500(7462):301-306.
-
(2013)
Nature
, vol.500
, Issue.7462
, pp. 301-306
-
-
You, C.1
Okano, H.2
Hui, S.3
Zhang, Z.4
Kim, M.5
Gunderson, C.W.6
Wang, Y.P.7
Lenz, P.8
Yan, D.9
Hwa, T.10
-
69
-
-
84874980587
-
Functioning of a metabolic flux sensor in Escherichia coli
-
Kochanowski K., Volkmer B., Gerosa L., Haverkorn van Rijsewijk B.R., Schmidt A., Heinemann M. Functioning of a metabolic flux sensor in Escherichia coli. Proc Natl Acad Sci U S A 2013, 110(3):1130-1135.
-
(2013)
Proc Natl Acad Sci U S A
, vol.110
, Issue.3
, pp. 1130-1135
-
-
Kochanowski, K.1
Volkmer, B.2
Gerosa, L.3
Haverkorn van Rijsewijk, B.R.4
Schmidt, A.5
Heinemann, M.6
-
70
-
-
84901650565
-
Linear superposition and prediction of bacterial promoter activity dynamics in complex conditions
-
Rothschild D., Dekel E., Hausser J., Bren A., Aidelberg G., Szekely P., Alon U. Linear superposition and prediction of bacterial promoter activity dynamics in complex conditions. PLoS Comput Biol 2014, 10(5):e1003602.
-
(2014)
PLoS Comput Biol
, vol.10
, Issue.5
, pp. e1003602
-
-
Rothschild, D.1
Dekel, E.2
Hausser, J.3
Bren, A.4
Aidelberg, G.5
Szekely, P.6
Alon, U.7
-
71
-
-
15744387380
-
Transcriptional regulation by the numbers: models
-
Bintu L., Buchler N.E., Garcia H.G., Gerland U., Hwa T., Kondev J., Phillips R. Transcriptional regulation by the numbers: models. Curr Opin Genet Dev 2005, 15(2):116-124.
-
(2005)
Curr Opin Genet Dev
, vol.15
, Issue.2
, pp. 116-124
-
-
Bintu, L.1
Buchler, N.E.2
Garcia, H.G.3
Gerland, U.4
Hwa, T.5
Kondev, J.6
Phillips, R.7
-
72
-
-
84876543942
-
Regulondb v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more
-
Database issue
-
Salgado H., Peralta-Gil M., Gama-Castro S., Santos-Zavaleta A., Muniz-Rascado L., Garcia-Sotelo J.S., Weiss V., Solano-Lira H., Martinez-Flores I., Medina-Rivera A., Salgado-Osorio G., et al. Regulondb v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more. Nucleic Acids Res 2013, 41(Database issue):D203-D213.
-
(2013)
Nucleic Acids Res
, vol.41
, pp. D203-D213
-
-
Salgado, H.1
Peralta-Gil, M.2
Gama-Castro, S.3
Santos-Zavaleta, A.4
Muniz-Rascado, L.5
Garcia-Sotelo, J.S.6
Weiss, V.7
Solano-Lira, H.8
Martinez-Flores, I.9
Medina-Rivera, A.10
Salgado-Osorio, G.11
-
73
-
-
84877296949
-
Systematic identification of allosteric protein-metabolite interactions that control enzyme activity in vivo
-
Link H., Kochanowski K., Sauer U. Systematic identification of allosteric protein-metabolite interactions that control enzyme activity in vivo. Nat Biotechnol 2013, 31(4):357-361.
-
(2013)
Nat Biotechnol
, vol.31
, Issue.4
, pp. 357-361
-
-
Link, H.1
Kochanowski, K.2
Sauer, U.3
-
74
-
-
80053079335
-
Functional characterization of bacterial srnas using a network biology approach
-
Modi S.R., Camacho D.M., Kohanski M.A., Walker G.C., Collins J.J. Functional characterization of bacterial srnas using a network biology approach. Proc Natl Acad Sci U S A 2011, 108(37):15522-15527.
-
(2011)
Proc Natl Acad Sci U S A
, vol.108
, Issue.37
, pp. 15522-15527
-
-
Modi, S.R.1
Camacho, D.M.2
Kohanski, M.A.3
Walker, G.C.4
Collins, J.J.5
-
75
-
-
78149498161
-
Extensive in vivo metabolite-protein interactions revealed by large-scale systematic analyses
-
Li X., Gianoulis T.A., Yip K.Y., Gerstein M., Snyder M. Extensive in vivo metabolite-protein interactions revealed by large-scale systematic analyses. Cell 2010, 143(4):639-650.
-
(2010)
Cell
, vol.143
, Issue.4
, pp. 639-650
-
-
Li, X.1
Gianoulis, T.A.2
Yip, K.Y.3
Gerstein, M.4
Snyder, M.5
-
76
-
-
77955501572
-
Achieving optimal growth through product feedback inhibition in metabolism
-
Goyal S., Yuan J., Chen T., Rabinowitz J.D., Wingreen N.S. Achieving optimal growth through product feedback inhibition in metabolism. PLoS Comput Biol 2010, 6(6).
-
(2010)
PLoS Comput Biol
, vol.6
, Issue.6
-
-
Goyal, S.1
Yuan, J.2
Chen, T.3
Rabinowitz, J.D.4
Wingreen, N.S.5
-
77
-
-
84859471521
-
Regulatory architecture determines optimal regulation of gene expression in metabolic pathways
-
Chubukov V., Zuleta I.A., Li H. Regulatory architecture determines optimal regulation of gene expression in metabolic pathways. Proc Natl Acad Sci U S A 2012, 109(13):5127-5132.
-
(2012)
Proc Natl Acad Sci U S A
, vol.109
, Issue.13
, pp. 5127-5132
-
-
Chubukov, V.1
Zuleta, I.A.2
Li, H.3
-
78
-
-
33847797256
-
Thermodynamics-based metabolic flux analysis
-
Henry C.S., Broadbelt L.J., Hatzimanikatis V. Thermodynamics-based metabolic flux analysis. Biophys J 2007, 92(5):1792-1805.
-
(2007)
Biophys J
, vol.92
, Issue.5
, pp. 1792-1805
-
-
Henry, C.S.1
Broadbelt, L.J.2
Hatzimanikatis, V.3
-
79
-
-
78650571311
-
Reducing the allowable kinetic space by constructing ensemble of dynamic models with the same steady-state flux
-
Tan Y., Rivera J.G., Contador C.A., Asenjo J.A., Liao J.C. Reducing the allowable kinetic space by constructing ensemble of dynamic models with the same steady-state flux. Metab Eng 2011, 13(1):60-75.
-
(2011)
Metab Eng
, vol.13
, Issue.1
, pp. 60-75
-
-
Tan, Y.1
Rivera, J.G.2
Contador, C.A.3
Asenjo, J.A.4
Liao, J.C.5
-
80
-
-
84884659937
-
Steady-state metabolite concentrations reflect a balance between maximizing enzyme efficiency and minimizing total metabolite load
-
Tepper N., Noor E., Amador-Noguez D., Haraldsdottir H.S., Milo R., Rabinowitz J., Liebermeister W., Shlomi T. Steady-state metabolite concentrations reflect a balance between maximizing enzyme efficiency and minimizing total metabolite load. PLOS ONE 2013, 8(9):e75370.
-
(2013)
PLOS ONE
, vol.8
, Issue.9
, pp. e75370
-
-
Tepper, N.1
Noor, E.2
Amador-Noguez, D.3
Haraldsdottir, H.S.4
Milo, R.5
Rabinowitz, J.6
Liebermeister, W.7
Shlomi, T.8
-
81
-
-
68049100110
-
Absolute metabolite concentrations and implied enzyme active site occupancy in Escherichia coli
-
Bennett B.D., Kimball E.H., Gao M., Osterhout R., Van Dien S.J., Rabinowitz J.D. Absolute metabolite concentrations and implied enzyme active site occupancy in Escherichia coli. Nat Chem Biol 2009, 5(8):593-599.
-
(2009)
Nat Chem Biol
, vol.5
, Issue.8
, pp. 593-599
-
-
Bennett, B.D.1
Kimball, E.H.2
Gao, M.3
Osterhout, R.4
Van Dien, S.J.5
Rabinowitz, J.D.6
-
82
-
-
80055098735
-
Hydrophobicity and charge shape cellular metabolite concentrations
-
Bar-Even A., Noor E., Flamholz A., Buescher J.M., Milo R. Hydrophobicity and charge shape cellular metabolite concentrations. PLoS Comput Biol 2011, 7(10):e1002166.
-
(2011)
PLoS Comput Biol
, vol.7
, Issue.10
, pp. e1002166
-
-
Bar-Even, A.1
Noor, E.2
Flamholz, A.3
Buescher, J.M.4
Milo, R.5
-
83
-
-
0000926337
-
Cell division: parameter values and the process
-
American Society for Microbiology, Washington, DC, F.C. I.J. Neidhardt, K.B. Low, B. Magasanik, M. Schaechter, H.E. Umbarger (Eds.)
-
Donachie W.D., Robinson A.C. Cell division: parameter values and the process. Escherichia coli and Salmonella typhimurium Cellular and Molecular Biology 1987, 1578-1593. American Society for Microbiology, Washington, DC. F.C. I.J. Neidhardt, K.B. Low, B. Magasanik, M. Schaechter, H.E. Umbarger (Eds.).
-
(1987)
Escherichia coli and Salmonella typhimurium Cellular and Molecular Biology
, pp. 1578-1593
-
-
Donachie, W.D.1
Robinson, A.C.2
-
84
-
-
73149109962
-
Shifts in growth strategies reflect tradeoffs in cellular economics
-
Molenaar D., van Berlo R., de Ridder D., Teusink B. Shifts in growth strategies reflect tradeoffs in cellular economics. Mol Syst Biol 2009, 5:323.
-
(2009)
Mol Syst Biol
, vol.5
, pp. 323
-
-
Molenaar, D.1
van Berlo, R.2
de Ridder, D.3
Teusink, B.4
-
85
-
-
84902184652
-
Visual account of protein investment in cellular functions
-
Liebermeister W., Noor E., Flamholz A., Davidi D., Bernhardt J., Milo R. Visual account of protein investment in cellular functions. Proc Natl Acad Sci U S A 2014, 111(23):8488-8493.
-
(2014)
Proc Natl Acad Sci U S A
, vol.111
, Issue.23
, pp. 8488-8493
-
-
Liebermeister, W.1
Noor, E.2
Flamholz, A.3
Davidi, D.4
Bernhardt, J.5
Milo, R.6
-
86
-
-
84878756325
-
Structural systems biology evaluation of metabolic thermotolerance in Escherichia coli
-
Chang R.L., Andrews K., Kim D., Li Z., Godzik A., Palsson B.O. Structural systems biology evaluation of metabolic thermotolerance in Escherichia coli. Science 2013, 340(6137):1220-1223.
-
(2013)
Science
, vol.340
, Issue.6137
, pp. 1220-1223
-
-
Chang, R.L.1
Andrews, K.2
Kim, D.3
Li, Z.4
Godzik, A.5
Palsson, B.O.6
-
87
-
-
84898648935
-
The binary protein-protein interaction landscape of Escherichia coli
-
Rajagopala S.V., Sikorski P., Kumar A., Mosca R., Vlasblom J., Arnold R., Franca-Koh J., Pakala S.B., Phanse S., Ceol A., Hauser R., et al. The binary protein-protein interaction landscape of Escherichia coli. Nat Biotechnol 2014, 32(3):285-290.
-
(2014)
Nat Biotechnol
, vol.32
, Issue.3
, pp. 285-290
-
-
Rajagopala, S.V.1
Sikorski, P.2
Kumar, A.3
Mosca, R.4
Vlasblom, J.5
Arnold, R.6
Franca-Koh, J.7
Pakala, S.B.8
Phanse, S.9
Ceol, A.10
Hauser, R.11
-
88
-
-
84867881743
-
Structure-based prediction of protein-protein interactions on a genome-wide scale
-
Zhang Q.C., Petrey D., Deng L., Qiang L., Shi Y., Thu C.A., Bisikirska B., Lefebvre C., Accili D., Hunter T., Maniatis T., et al. Structure-based prediction of protein-protein interactions on a genome-wide scale. Nature 2012, 490(7421):556-560.
-
(2012)
Nature
, vol.490
, Issue.7421
, pp. 556-560
-
-
Zhang, Q.C.1
Petrey, D.2
Deng, L.3
Qiang, L.4
Shi, Y.5
Thu, C.A.6
Bisikirska, B.7
Lefebvre, C.8
Accili, D.9
Hunter, T.10
Maniatis, T.11
-
89
-
-
0034919604
-
Channeling of substrates and intermediates in enzyme-catalyzed reactions
-
Huang X., Holden H.M., Raushel F.M. Channeling of substrates and intermediates in enzyme-catalyzed reactions. Annu Rev Biochem 2001, 70:149-180.
-
(2001)
Annu Rev Biochem
, vol.70
, pp. 149-180
-
-
Huang, X.1
Holden, H.M.2
Raushel, F.M.3
-
90
-
-
84861443800
-
Natural strategies for the spatial optimization of metabolism in synthetic biology
-
Agapakis C.M., Boyle P.M., Silver P.A. Natural strategies for the spatial optimization of metabolism in synthetic biology. Nat Chem Biol 2012, 8(6):527-535.
-
(2012)
Nat Chem Biol
, vol.8
, Issue.6
, pp. 527-535
-
-
Agapakis, C.M.1
Boyle, P.M.2
Silver, P.A.3
-
91
-
-
0035478585
-
Macromolecular crowding: obvious but underappreciated
-
Ellis R.J. Macromolecular crowding: obvious but underappreciated. Trends Biochem Sci 2001, 26(10):597-604.
-
(2001)
Trends Biochem Sci
, vol.26
, Issue.10
, pp. 597-604
-
-
Ellis, R.J.1
-
93
-
-
84892788440
-
Constraint-based models predict metabolic and associated cellular functions
-
Bordbar A., Monk J.M., King Z.A., Palsson B.O. Constraint-based models predict metabolic and associated cellular functions. Nat Rev Genet 2014, 15(2):107-120.
-
(2014)
Nat Rev Genet
, vol.15
, Issue.2
, pp. 107-120
-
-
Bordbar, A.1
Monk, J.M.2
King, Z.A.3
Palsson, B.O.4
-
94
-
-
77956696072
-
High-throughput generation, optimization and analysis of genome-scale metabolic models
-
Henry C.S., DeJongh M., Best A.A., Frybarger P.M., Linsay B., Stevens R.L. High-throughput generation, optimization and analysis of genome-scale metabolic models. Nat Biotechnol 2010, 28(9):977-982.
-
(2010)
Nat Biotechnol
, vol.28
, Issue.9
, pp. 977-982
-
-
Henry, C.S.1
DeJongh, M.2
Best, A.A.3
Frybarger, P.M.4
Linsay, B.5
Stevens, R.L.6
-
95
-
-
83255164884
-
Comprehensive genome-wide protein-DNA interactions detected at single-nucleotide resolution
-
Rhee H.S., Pugh B.F. Comprehensive genome-wide protein-DNA interactions detected at single-nucleotide resolution. Cell 2011, 147(6):1408-1419.
-
(2011)
Cell
, vol.147
, Issue.6
, pp. 1408-1419
-
-
Rhee, H.S.1
Pugh, B.F.2
-
96
-
-
2342648924
-
Integrating high-throughput and computational data elucidates bacterial networks
-
Covert M.W., Knight E.M., Reed J.L., Herrgard M.J., Palsson B.O. Integrating high-throughput and computational data elucidates bacterial networks. Nature 2004, 429(6987):92-96.
-
(2004)
Nature
, vol.429
, Issue.6987
, pp. 92-96
-
-
Covert, M.W.1
Knight, E.M.2
Reed, J.L.3
Herrgard, M.J.4
Palsson, B.O.5
-
97
-
-
34447523907
-
Systematic evaluation of objective functions for predicting intracellular fluxes in Escherichia coli
-
Schuetz R., Kuepfer L., Sauer U. Systematic evaluation of objective functions for predicting intracellular fluxes in Escherichia coli. Mol Syst Biol 2007, 3:119.
-
(2007)
Mol Syst Biol
, vol.3
, pp. 119
-
-
Schuetz, R.1
Kuepfer, L.2
Sauer, U.3
|