-
1
-
-
34447523907
-
Systematic evaluation of objective functions for predicting intracellular fluxes in Escherichia coli
-
Schuetz R, Kuepfer L, Sauer U, (2007) Systematic evaluation of objective functions for predicting intracellular fluxes in Escherichia coli. Mol Syst Biol 3: 119. PubMed: 17625511.
-
(2007)
Mol Syst Biol
, vol.3
, pp. 119
-
-
Schuetz, R.1
Kuepfer, L.2
Sauer, U.3
-
2
-
-
84860487758
-
Multidimensional Optimality of Microbial Metabolism
-
Schuetz R, Zamboni N, Zampieri M, Heinemann M, Sauer U, (2012) Multidimensional Optimality of Microbial Metabolism. Sci Signal 336: 601-604. PubMed: 22556256.
-
(2012)
Sci Signal
, vol.336
, pp. 601-604
-
-
Schuetz, R.1
Zamboni, N.2
Zampieri, M.3
Heinemann, M.4
Sauer, U.5
-
3
-
-
53649110425
-
Systems-level metabolic flux profiling identifies fatty acid synthesis as a target for antiviral therapy
-
doi:10.1038/nbt.1500
-
Munger J, Bennett BD, Parikh A, Feng XJ, McArdle J, et al. (2008) Systems-level metabolic flux profiling identifies fatty acid synthesis as a target for antiviral therapy. Nat Biotechnol 26: 1179-1186. doi:10.1038/nbt.1500. PubMed: 18820684.
-
(2008)
Nat Biotechnol
, vol.26
, pp. 1179-1186
-
-
Munger, J.1
Bennett, B.D.2
Parikh, A.3
Feng, X.J.4
McArdle, J.5
-
4
-
-
68049100110
-
Absolute metabolite concentrations and implied enzyme active site occupancy in Escherichia coli
-
doi:10.1038/nchembio.186
-
Bennett BD, Kimball EH, Gao M, Osterhout R, Van Dien SJ, et al. (2009) Absolute metabolite concentrations and implied enzyme active site occupancy in Escherichia coli. Nat Chem Biol 5: 593-599. doi:10.1038/nchembio.186. PubMed: 19561621.
-
(2009)
Nat Chem Biol
, vol.5
, pp. 593-599
-
-
Bennett, B.D.1
Kimball, E.H.2
Gao, M.3
Osterhout, R.4
Van Dien, S.J.5
-
5
-
-
34247612307
-
Multiple High-Throughput Analyses Monitor the Response of E. coli to Perturbations
-
doi:10.1126/science.1132067
-
Ishii N, Nakahigashi K, Baba T, Robert M, Soga T, et al. (2007) Multiple High-Throughput Analyses Monitor the Response of E. coli to Perturbations. Science 316: 593-597. doi:10.1126/science.1132067. PubMed: 17379776.
-
(2007)
Science
, vol.316
, pp. 593-597
-
-
Ishii, N.1
Nakahigashi, K.2
Baba, T.3
Robert, M.4
Soga, T.5
-
6
-
-
83055188821
-
Metabolome remodeling during the acidogenic-solventogenic transition in Clostridium acetobutylicum
-
Amador-Noguez D, Brasg IA, Feng X-J, Roquet N, Rabinowitz JD, (2011) Metabolome remodeling during the acidogenic-solventogenic transition in Clostridium acetobutylicum. Appl Environ Microbiol, 77: 7984-97. PubMed: 21948824.
-
(2011)
Appl Environ Microbiol
, vol.77
, pp. 7984-7997
-
-
Amador-Noguez, D.1
Brasg, I.A.2
Feng, X.-J.3
Roquet, N.4
Rabinowitz, J.D.5
-
7
-
-
77749320898
-
What is flux balance analysis?
-
doi:10.1038/nbt.1614
-
Orth JD, Thiele I, Palsson BO, (2010) What is flux balance analysis? Nat Biotechnol 28: 245-248. doi:10.1038/nbt.1614. PubMed: 20212490.
-
(2010)
Nat Biotechnol
, vol.28
, pp. 245-248
-
-
Orth, J.D.1
Thiele, I.2
Palsson, B.O.3
-
8
-
-
9544253891
-
Genome-scale models of microbial cells: evaluating the consequences of constraints
-
doi:10.1038/nrmicro1023
-
Price ND, Reed JL, Palsson BO, (2004) Genome-scale models of microbial cells: evaluating the consequences of constraints. Nat Rev Microbiol 2: 886-897. doi:10.1038/nrmicro1023. PubMed: 15494745.
-
(2004)
Nat Rev Microbiol
, vol.2
, pp. 886-897
-
-
Price, N.D.1
Reed, J.L.2
Palsson, B.O.3
-
9
-
-
77954635021
-
The importance of compartmentalization in metabolic flux models: yeast as an ecosystem of organelles
-
Klitgord N, Segrè D, (2010). The importance of compartmentalization in metabolic flux models: yeast as an ecosystem of organellesGenome Inform 22: 41-55.
-
(2010)
Genome Inform
, vol.22
, pp. 41-55
-
-
Klitgord, N.1
Segrè, D.2
-
10
-
-
34447308322
-
Genome-scale analysis of Saccharomyces cerevisiae metabolism and ethanol production in fed-batch culture
-
doi:10.1002/bit.21332
-
Hjersted JL, Henson MA, Mahadevan R, (2007) Genome-scale analysis of Saccharomyces cerevisiae metabolism and ethanol production in fed-batch culture. Biotechnol Bioeng 97: 1190-1204. doi:10.1002/bit.21332. PubMed: 17243146.
-
(2007)
Biotechnol Bioeng
, vol.97
, pp. 1190-1204
-
-
Hjersted, J.L.1
Henson, M.A.2
Mahadevan, R.3
-
11
-
-
0242487787
-
Optknock: a bilevel programming framework for identifying gene knockout strategies for microbial strain optimization
-
doi:10.1002/bit.10803
-
Burgard AP, Pharkya P, Maranas CD, (2003) Optknock: a bilevel programming framework for identifying gene knockout strategies for microbial strain optimization. Biotechnol Bioeng 84: 647-657. doi:10.1002/bit.10803. PubMed: 14595777.
-
(2003)
Biotechnol Bioeng
, vol.84
, pp. 647-657
-
-
Burgard, A.P.1
Pharkya, P.2
Maranas, C.D.3
-
12
-
-
77949495880
-
Predicting Metabolic Engineering Knockout Strategies for Chemical Production: Accounting for Competing Pathways
-
Tepper N, Shlomi T, (2010) Predicting Metabolic Engineering Knockout Strategies for Chemical Production: Accounting for Competing Pathways. Bioinformatics 26: 536-543. PubMed: 20031969.
-
(2010)
Bioinformatics
, vol.26
, pp. 536-543
-
-
Tepper, N.1
Shlomi, T.2
-
14
-
-
33747061013
-
Structural kinetic modeling of metabolic networks
-
doi:10.1073/pnas.0600013103
-
Steuer R, Gross T, Selbig J, Blasius B, (2006) Structural kinetic modeling of metabolic networks. Proc Natl Acad Sci USA 103: 11868-11873. doi:10.1073/pnas.0600013103. PubMed: 16880395.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 11868-11873
-
-
Steuer, R.1
Gross, T.2
Selbig, J.3
Blasius, B.4
-
15
-
-
58149156532
-
Kinetic hybrid models composed of mechanistic and simplified enzymatic rate laws - a promising method for speeding up the kinetic modelling of complex metabolic networks
-
doi:10.1111/j.1742-4658.2008.06784.x
-
Bulik S, Grimbs S, Huthmacher C, Selbig J, Holzhütter HG, (2009) Kinetic hybrid models composed of mechanistic and simplified enzymatic rate laws - a promising method for speeding up the kinetic modelling of complex metabolic networks. FEBS J 276: 410-424. doi:10.1111/j.1742-4658.2008.06784.x. PubMed: 19137631.
-
(2009)
FEBS J
, vol.276
, pp. 410-424
-
-
Bulik, S.1
Grimbs, S.2
Huthmacher, C.3
Selbig, J.4
Holzhütter, H.G.5
-
16
-
-
77952797285
-
Streamlining the construction of large-scale dynamic models using generic kinetic equations
-
doi:10.1093/bioinformatics/btq136
-
Adiamah DA, Handl J, Schwartz J-M, (2010) Streamlining the construction of large-scale dynamic models using generic kinetic equations. Bioinformatics 26: 1324-1331. doi:10.1093/bioinformatics/btq136. PubMed: 20363732.
-
(2010)
Bioinformatics
, vol.26
, pp. 1324-1331
-
-
Adiamah, D.A.1
Handl, J.2
Schwartz, J.-M.3
-
17
-
-
33750705293
-
Integration of metabolome data with metabolic networks reveals reporter reactions
-
Cakir T, Patil KR, Onsan Zi, Ulgen KO, Kirdar B, et al. (2006) Integration of metabolome data with metabolic networks reveals reporter reactions. Mol Syst Biol 2: 50. PubMed: 17016516.
-
(2006)
Mol Syst Biol
, vol.2
, pp. 50
-
-
Cakir, T.1
Patil, K.R.2
Onsan, Z.3
Ulgen, K.O.4
Kirdar, B.5
-
18
-
-
77951125481
-
Tradeoff between enzyme and metabolite efficiency maintains metabolic homeostasis upon perturbations in enzyme capacity
-
Fendt S-M, Buescher JM, Rudroff F, Picotti P, Zamboni N, et al. (2010) Tradeoff between enzyme and metabolite efficiency maintains metabolic homeostasis upon perturbations in enzyme capacity. Mol Syst Biol 6: 356-. PubMed: 20393576.
-
(2010)
Mol Syst Biol
, vol.6
, pp. 356
-
-
Fendt, S.-M.1
Buescher, J.M.2
Rudroff, F.3
Picotti, P.4
Zamboni, N.5
-
19
-
-
33847797256
-
Thermodynamics-Based Metabolic Flux Analysis
-
doi:10.1529/biophysj.106.093138
-
Christopher S, Henry LJB, Hatzimanikatis V, (2007) Thermodynamics-Based Metabolic Flux Analysis. Biophys J 92: 1792-1805. doi:10.1529/biophysj.106.093138. PubMed: 17172310.
-
(2007)
Biophys J
, vol.92
, pp. 1792-1805
-
-
Christopher, S.1
Henry, L.J.B.2
Hatzimanikatis, V.3
-
21
-
-
84861128104
-
System-Level Insights into Yeast Metabolism by Thermodynamic Analysis of Elementary Flux Modes
-
Jol SJ, Kümmel A, Terzer M, Stelling J, Heinemann M, (2012) System-Level Insights into Yeast Metabolism by Thermodynamic Analysis of Elementary Flux Modes. PLOS Comput Biol 8: e1002415. PubMed: 22416224.
-
(2012)
PLOS Comput Biol
, vol.8
-
-
Jol, S.J.1
Kümmel, A.2
Terzer, M.3
Stelling, J.4
Heinemann, M.5
-
22
-
-
33745433792
-
Putative regulatory sites unraveled by network-embedded thermodynamic analysis of metabolome data
-
Kümmel A, Panke S, Heinemann M, (2006) Putative regulatory sites unraveled by network-embedded thermodynamic analysis of metabolome data. Mol Syst Biol 2: 2006-2034. PubMed: 16788595.
-
(2006)
Mol Syst Biol
, vol.2
, pp. 2006-2034
-
-
Kümmel, A.1
Panke, S.2
Heinemann, M.3
-
23
-
-
0030804853
-
Flux analysis of underdetermined metabolic networks: the quest for the missing constraints
-
doi:10.1016/S0167-7799(97)01067-6
-
Bonarius HPJ, Schmid G, Tramper J, (1997) Flux analysis of underdetermined metabolic networks: the quest for the missing constraints. Trends Biotechnol 15: 308-314. doi:10.1016/S0167-7799(97)01067-6.
-
(1997)
Trends Biotechnol
, vol.15
, pp. 308-314
-
-
Bonarius, H.P.J.1
Schmid, G.2
Tramper, J.3
-
24
-
-
0027537642
-
Refined algorithm and computer program for calculating all non-negative fluxes admissible in steady states of biochemical reaction systems with or without some flux rates fixed
-
Schuster R, Schuster S, (1993) Refined algorithm and computer program for calculating all non-negative fluxes admissible in steady states of biochemical reaction systems with or without some flux rates fixed. Comput Appl Biosci CABIOS 9: 79-85.
-
(1993)
Comput Appl Biosci CABIOS
, vol.9
, pp. 79-85
-
-
Schuster, R.1
Schuster, S.2
-
25
-
-
79955374298
-
Recommendations for terminology and databases for biochemical thermodynamics
-
Alberty RA, Bowden AC, Goldberg RN, Hammes GG, Tipton K, et al. (2011) Recommendations for terminology and databases for biochemical thermodynamics. Biophys Chem, 155: 89-103. PubMed: 21501921.
-
(2011)
Biophys Chem
, vol.155
, pp. 89-103
-
-
Alberty, R.A.1
Bowden, A.C.2
Goldberg, R.N.3
Hammes, G.G.4
Tipton, K.5
-
26
-
-
0001112639
-
Minimization of intermediate concentrations as a suggested optimality principle for biochemical networks
-
doi:10.1007/BF00160470
-
Schuster S, Heinrich R, (1991) Minimization of intermediate concentrations as a suggested optimality principle for biochemical networks. J Math Biol 29: 425-442. doi:10.1007/BF00160470.
-
(1991)
J Math Biol
, vol.29
, pp. 425-442
-
-
Schuster, S.1
Heinrich, R.2
-
27
-
-
85012765723
-
Limitation of metabolite concentrations and the conservation of solvent capacity in the living cell
-
Atkinson DE, (1969) Limitation of metabolite concentrations and the conservation of solvent capacity in the living cell. Curr Top Cell Regul 1: 29-43.
-
(1969)
Curr Top Cell Regul
, vol.1
, pp. 29-43
-
-
Atkinson, D.E.1
-
28
-
-
0014072872
-
Metabolic control through reflexive enzyme action
-
doi:10.1016/0022-5193(67)90045-8
-
Koch AL, (1967) Metabolic control through reflexive enzyme action. J Theor Biol 15: 75-102. doi:10.1016/0022-5193(67)90045-8. PubMed: 6034163.
-
(1967)
J Theor Biol
, vol.15
, pp. 75-102
-
-
Koch, A.L.1
-
29
-
-
80055098735
-
Hydrophobicity and Charge Shape Cellular Metabolite Concentrations
-
Bar-Even A, Noor E, Flamholz A, Buescher JM, Milo R, (2011) Hydrophobicity and Charge Shape Cellular Metabolite Concentrations. PLOS Comput Biol 7: e1002166. PubMed: 21998563.
-
(2011)
PLOS Comput Biol
, vol.7
-
-
Bar-Even, A.1
Noor, E.2
Flamholz, A.3
Buescher, J.M.4
Milo, R.5
-
30
-
-
0346555269
-
Optimization of specificity in a cellular protein interaction network by negative selection
-
doi:10.1038/nature02178
-
Zarrinpar A, Park SH, Lim WA, (2003) Optimization of specificity in a cellular protein interaction network by negative selection. Nature 426: 676-680. doi:10.1038/nature02178. PubMed: 14668868.
-
(2003)
Nature
, vol.426
, pp. 676-680
-
-
Zarrinpar, A.1
Park, S.H.2
Lim, W.A.3
-
31
-
-
0003796783
-
Escherichia coli and Salmonella: cellular and molecular biology. Escherichia coli and Salmonella
-
Gross C, Neidhardt F, Curtiss R, Lin E, (1996) Escherichia coli and Salmonella: cellular and molecular biology. Escherichia coli and Salmonella. Cell Mol Biol.
-
(1996)
Cell Mol Biol
-
-
Gross, C.1
Neidhardt, F.2
Curtiss, R.3
Lin, E.4
-
33
-
-
0030016417
-
Bacterial growth inhibition by overproduction of protein
-
doi:10.1046/j.1365-2958.1996.5901313.x
-
Kurland CG, Dong H, (1996) Bacterial growth inhibition by overproduction of protein. Mol Microbiol 21: 1-4. doi:10.1046/j.1365-2958.1996.5901313.x. PubMed: 8843428.
-
(1996)
Mol Microbiol
, vol.21
, pp. 1-4
-
-
Kurland, C.G.1
Dong, H.2
-
34
-
-
33746649199
-
In Vivo Robustness Analysis of Cell Division Cycle Genes in Saccharomyces cerevisiae
-
doi:10.1371/journal.pgen.0020111
-
Moriya H, Shimizu-Yoshida Y, Kitano H, (2006) In Vivo Robustness Analysis of Cell Division Cycle Genes in Saccharomyces cerevisiae. PLOS Genet 2: e111. doi:10.1371/journal.pgen.0020111. PubMed: 16839182.
-
(2006)
PLOS Genet
, vol.2
-
-
Moriya, H.1
Shimizu-Yoshida, Y.2
Kitano, H.3
-
36
-
-
34347332311
-
A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information
-
Feist AM, Henry CS, Reed JL, Krummenacker M, Joyce AR, et al. (2007) A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information. Mol Syst Biol 3: 121. PubMed: 17593909.
-
(2007)
Mol Syst Biol
, vol.3
, pp. 121
-
-
Feist, A.M.1
Henry, C.S.2
Reed, J.L.3
Krummenacker, M.4
Joyce, A.R.5
-
37
-
-
51849115840
-
Genome-scale reconstruction and in silico analysis of the Clostridium acetobutylicum ATCC 824 metabolic network
-
doi:10.1007/s00253-008-1654-4
-
Lee J, Yun H, Feist AM, Palsson BØ, Lee SY, (2008) Genome-scale reconstruction and in silico analysis of the Clostridium acetobutylicum ATCC 824 metabolic network. Appl Microbiol Biotechnol 80: 849-862. doi:10.1007/s00253-008-1654-4. PubMed: 18758767.
-
(2008)
Appl Microbiol Biotechnol
, vol.80
, pp. 849-862
-
-
Lee, J.1
Yun, H.2
Feist, A.M.3
Palsson, BØ.4
Lee, S.Y.5
-
38
-
-
0037023907
-
Stoichiometric model for evaluating the metabolic capabilities of the facultative methylotroph Methylobacterium extorquens AM1, with application to reconstruction of C(3) and C(4) metabolism
-
doi:10.1002/bit.10200
-
Van Dien SJ, Lidstrom ME, (2002) Stoichiometric model for evaluating the metabolic capabilities of the facultative methylotroph Methylobacterium extorquens AM1, with application to reconstruction of C(3) and C(4) metabolism. Biotechnol Bioeng 78: 296-312. doi:10.1002/bit.10200. PubMed: 11920446.
-
(2002)
Biotechnol Bioeng
, vol.78
, pp. 296-312
-
-
Van Dien, S.J.1
Lidstrom, M.E.2
-
39
-
-
0036330798
-
Genome-scale metabolic model of Helicobacter pylori
-
doi:10.1128/JB.184.16.4582-4593.2002
-
Schilling CH, Covert MW, Famili I, Church GM, Edwards JS, et al. (2002) Genome-scale metabolic model of Helicobacter pylori. J Bacteriol 184: 4582-4593. doi:10.1128/JB.184.16.4582-4593.2002. PubMed: 12142428.
-
(2002)
J Bacteriol
, vol.184
, pp. 4582-4593
-
-
Schilling, C.H.1
Covert, M.W.2
Famili, I.3
Church, G.M.4
Edwards, J.S.5
-
40
-
-
0037313750
-
Genome-scale reconstruction of the Saccharomyces cerevisiae metabolic network
-
doi:10.1101/gr.234503
-
Förster J, Famili I, Fu P, Palsson BO, Nielsen J, (2003) Genome-scale reconstruction of the Saccharomyces cerevisiae metabolic network. Genome Res 13: 244-253. doi:10.1101/gr.234503. PubMed: 12566402.
-
(2003)
Genome Res
, vol.13
, pp. 244-253
-
-
Förster, J.1
Famili, I.2
Fu, P.3
Palsson, B.O.4
Nielsen, J.5
-
41
-
-
9544253891
-
Genome-Scale Models of Microbial Cells: Evaluating the Consequences of Consraints
-
Nathan D, Price JLRaBP, (2004) Genome-Scale Models of Microbial Cells: Evaluating the Consequences of Consraints. In: Nature Reviews- Microbiology Volume 2.
-
(2004)
Nature Reviews - Microbiology
, vol.2
-
-
Nathan, D.1
Price, J.L.R.B.P.2
-
42
-
-
33846910173
-
Global reconstruction of the human metabolic network based on genomic and bibliomic data
-
doi:10.1073/pnas.0610772104
-
Duarte NC, Becker SA, Jamshidi N, Thiele I, Mo ML, et al. (2007) Global reconstruction of the human metabolic network based on genomic and bibliomic data. Proc Natl Acad Sci U S A 104: 1777-1782. doi:10.1073/pnas.0610772104. PubMed: 17267599.
-
(2007)
Proc Natl Acad Sci U S A
, vol.104
, pp. 1777-1782
-
-
Duarte, N.C.1
Becker, S.A.2
Jamshidi, N.3
Thiele, I.4
Mo, M.L.5
-
43
-
-
3843128481
-
Reconstruction and validation of Saccharomyces cerevisiae iND750, a fully compartmentalized genome-scale metabolic model
-
doi:10.1101/gr.2250904
-
Duarte NC, Herrgård MJ, Palsson BO, (2004) Reconstruction and validation of Saccharomyces cerevisiae iND750, a fully compartmentalized genome-scale metabolic model. Genome Res 14: 1298-1309. doi:10.1101/gr.2250904. PubMed: 15197165.
-
(2004)
Genome Res
, vol.14
, pp. 1298-1309
-
-
Duarte, N.C.1
Herrgård, M.J.2
Palsson, B.O.3
-
44
-
-
84990406760
-
Group contributions for estimating standard gibbs energies of formation of biochemical compounds in aqueous solution
-
doi:10.1002/bit.260380716
-
Mavrovouniotis ML, (1990) Group contributions for estimating standard gibbs energies of formation of biochemical compounds in aqueous solution. Biotechnol Bioeng 38: 803-804. doi:10.1002/bit.260380716. PubMed: 18595046.
-
(1990)
Biotechnol Bioeng
, vol.38
, pp. 803-804
-
-
Mavrovouniotis, M.L.1
-
45
-
-
51049107514
-
Group Contribution Method for Thermodynamic Analysis of Complex Metabolic Networks
-
doi:10.1529/biophysj.107.124784
-
Jankowski MD, Henry CS, Broadbelt LJ, Hatzimanikatis V, (2008) Group Contribution Method for Thermodynamic Analysis of Complex Metabolic Networks. Biophys J 95: 1487-1499. doi:10.1529/biophysj.107.124784. PubMed: 18645197.
-
(2008)
Biophys J
, vol.95
, pp. 1487-1499
-
-
Jankowski, M.D.1
Henry, C.S.2
Broadbelt, L.J.3
Hatzimanikatis, V.4
-
46
-
-
84865136870
-
An integrated open framework for thermodynamics of reactions that combines accuracy and coverage
-
Noor E, Bar-Even A, Flamholz A, Lubling Y, Davidi D, et al. (2012) An integrated open framework for thermodynamics of reactions that combines accuracy and coverage. Bioinformatics.
-
(2012)
Bioinformatics
-
-
Noor, E.1
Bar-Even, A.2
Flamholz, A.3
Lubling, Y.4
Davidi, D.5
-
47
-
-
8844259501
-
Thermodynamics of enzyme-catalyzed reactions-a database for quantitative biochemistry
-
doi:10.1093/bioinformatics/bth314
-
Goldberg RN, Tewari YB, Bhat TN, (2004) Thermodynamics of enzyme-catalyzed reactions-a database for quantitative biochemistry. Bioinformatics 20: 2874-2877. doi:10.1093/bioinformatics/bth314. PubMed: 15145806.
-
(2004)
Bioinformatics
, vol.20
, pp. 2874-2877
-
-
Goldberg, R.N.1
Tewari, Y.B.2
Bhat, T.N.3
-
48
-
-
79955137362
-
An in vivo data-driven framework for classification and quantification of enzyme kinetics and determination of apparent thermodynamic data
-
Canelas AB, Ras C, Ten Pierick A, Van Gulik WM, Heijnen JJ, (2011) An in vivo data-driven framework for classification and quantification of enzyme kinetics and determination of apparent thermodynamic data. Metab Eng.
-
(2011)
Metab Eng
-
-
Canelas, A.B.1
Ras, C.2
Ten Pierick, A.3
Van Gulik, W.M.4
Heijnen, J.J.5
-
49
-
-
0036286631
-
Energy balance for analysis of complex metabolic networks
-
doi:10.1016/S0006-3495(02)75150-3
-
Beard DA, Liang SD, Qian H, (2002) Energy balance for analysis of complex metabolic networks. Biophys J 83: 79-86. doi:10.1016/S0006-3495(02)75150-3. PubMed: 12080101.
-
(2002)
Biophys J
, vol.83
, pp. 79-86
-
-
Beard, D.A.1
Liang, S.D.2
Qian, H.3
-
50
-
-
33847797256
-
Thermodynamics-based metabolic flux analysis
-
doi:10.1529/biophysj.106.093138
-
Henry CS, Broadbelt LJ, Hatzimanikatis V, (2007) Thermodynamics-based metabolic flux analysis. Biophys J 92: 1792-1805. doi:10.1529/biophysj.106.093138. PubMed: 17172310.
-
(2007)
Biophys J
, vol.92
, pp. 1792-1805
-
-
Henry, C.S.1
Broadbelt, L.J.2
Hatzimanikatis, V.3
-
51
-
-
0037422210
-
Metabolic flux analysis of Escherichia coli K12 grown on 13 C-labeled acetate and glucose using GC-MS and powerful flux calculation method
-
doi:10.1016/S0168-1656(02)00316-4
-
Zhao J, Shimizu K, (2003) Metabolic flux analysis of Escherichia coli K12 grown on 13 C-labeled acetate and glucose using GC-MS and powerful flux calculation method. J Biotechnol 101: 101-117. doi:10.1016/S0168-1656(02)00316-4. PubMed: 12568740.
-
(2003)
J Biotechnol
, vol.101
, pp. 101-117
-
-
Zhao, J.1
Shimizu, K.2
-
53
-
-
0037008673
-
Transcriptional regulation in constraints-based metabolic models of Escherichia coli
-
doi:10.1074/jbc.M201691200
-
Covert MW, Palsson BØ, (2002) Transcriptional regulation in constraints-based metabolic models of Escherichia coli. J Biol Chem 277: 28058-28064. doi:10.1074/jbc.M201691200. PubMed: 12006566.
-
(2002)
J Biol Chem
, vol.277
, pp. 28058-28064
-
-
Covert, M.W.1
Palsson, BØ.2
-
54
-
-
77955102352
-
Quantifying E. coli proteome and transcriptome with single-molecule sensitivity in single cells
-
doi:10.1126/science.1188308
-
Taniguchi Y, Choi PJ, Li GW, Chen H, Babu M, et al. (2010) Quantifying E. coli proteome and transcriptome with single-molecule sensitivity in single cells. Science 329: 533-538. doi:10.1126/science.1188308. PubMed: 20671182.
-
(2010)
Science
, vol.329
, pp. 533-538
-
-
Taniguchi, Y.1
Choi, P.J.2
Li, G.W.3
Chen, H.4
Babu, M.5
-
55
-
-
67650136370
-
Influence of uncertainties in pH, pMg, activity coefficients, metabolite concentrations, and other factors on the analysis of the thermodynamic feasibility of metabolic pathways
-
doi:10.1002/bit.22309
-
Vojinović V, von Stockar U, (2009) Influence of uncertainties in pH, pMg, activity coefficients, metabolite concentrations, and other factors on the analysis of the thermodynamic feasibility of metabolic pathways. Biotechnol Bioeng 103: 780-795. doi:10.1002/bit.22309. PubMed: 19365870.
-
(2009)
Biotechnol Bioeng
, vol.103
, pp. 780-795
-
-
Vojinović, V.1
von Stockar, U.2
-
56
-
-
84857672615
-
Global network reorganization during dynamic adaptations of Bacillus subtilis metabolism
-
doi:10.1126/science.1206871
-
Buescher JM, Liebermeister W, Jules M, Uhr M, Muntel J, et al. (2012) Global network reorganization during dynamic adaptations of Bacillus subtilis metabolism. Science 335: 1099-1103. doi:10.1126/science.1206871. PubMed: 22383848.
-
(2012)
Science
, vol.335
, pp. 1099-1103
-
-
Buescher, J.M.1
Liebermeister, W.2
Jules, M.3
Uhr, M.4
Muntel, J.5
-
57
-
-
58149185126
-
BRENDA, AMENDA and FRENDA the enzyme information system: new content and tools in 2009
-
doi:10.1093/nar/gkn820
-
Chang A, Scheer M, Grote A, Schomburg I, Schomburg D, (2009) BRENDA, AMENDA and FRENDA the enzyme information system: new content and tools in 2009. Nucleic Acids Res 37: D588-D592. doi:10.1093/nar/gkn820. PubMed: 18984617.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Chang, A.1
Scheer, M.2
Grote, A.3
Schomburg, I.4
Schomburg, D.5
-
58
-
-
77957764414
-
-
Honolulu, Department of Political Science
-
Rummel RJ, (1976) Understanding correlation. Honolulu: Department of Political Science, University of Hawaii.
-
(1976)
Understanding Correlation
-
-
Rummel, R.J.1
|