-
1
-
-
84874656224
-
Medium-Dependent control of the bacterial growth rate
-
EhrenbergM, Bremer H, Dennis PP (2013) Medium-Dependent control of the bacterial growth rate. Biochimie 95(4):643-658.
-
(2013)
Biochimie
, vol.95
, Issue.4
, pp. 643-658
-
-
Ehrenberg, M.1
Bremer, H.2
Dennis, P.P.3
-
2
-
-
0001140586
-
Dependency on medium and temperature of cell size and chemical composition during balanced grown of Salmonella typhimurium
-
Schaechter M, Maaloe O, Kjeldgaard NO (1958) Dependency on medium and temperature of cell size and chemical composition during balanced grown of Salmonella typhimurium. J Gen Microbiol 19(3):592-606.
-
(1958)
J Gen Microbiol
, vol.19
, Issue.3
, pp. 592-606
-
-
Schaechter, M.1
Maaloe, O.2
Kjeldgaard, N.O.3
-
3
-
-
0014405706
-
Relationship between cell size and time of initiation of DNA replication
-
Donachie WD (1968) Relationship between cell size and time of initiation of DNA replication. Nature 219(5158):1077-1079.
-
(1968)
Nature
, vol.219
, Issue.5158
, pp. 1077-1079
-
-
Donachie, W.D.1
-
5
-
-
0000640710
-
-
eds Böck A, et al. ASM Press, Washington, DC). Available at
-
Bremer H, Dennis PP (2008) EcoSal-Escherichia coli and Salmonella: Cellular andMolecular Biology, eds Böck A, et al. (ASM Press, Washington, DC). Available at www.ecosal.org.
-
(2008)
EcoSal-Escherichia Coli and Salmonella: Cellular AndMolecular Biology
-
-
Bremer, H.1
Dennis, P.P.2
-
6
-
-
79960943853
-
Bacterial growth laws and their applications
-
Scott M, Hwa T (2011) Bacterial growth laws and their applications. Curr Opin Biotechnol 22(4):559-565.
-
(2011)
Curr Opin Biotechnol
, vol.22
, Issue.4
, pp. 559-565
-
-
Scott, M.1
Hwa, T.2
-
7
-
-
0028146781
-
Stoichiometric flux balance models quantitatively predict growth and metabolic by-Product secretion in wild-Type Escherichia coli W3110
-
Varma A, Palsson BO (1994) Stoichiometric flux balance models quantitatively predict growth and metabolic by-Product secretion in wild-Type Escherichia coli W3110. Appl Environ Microbiol 60(10):3724-3731.
-
(1994)
Appl Environ Microbiol
, vol.60
, Issue.10
, pp. 3724-3731
-
-
Varma, A.1
Palsson, B.O.2
-
8
-
-
0035834519
-
Comparison of repressor and transcriptional attenuator systems for control of amino acid biosynthetic operons
-
Elf J, Berg OG, Ehrenberg M (2001) Comparison of repressor and transcriptional attenuator systems for control of amino acid biosynthetic operons. J Mol Biol 313(5):941-954.
-
(2001)
J Mol Biol
, vol.313
, Issue.5
, pp. 941-954
-
-
Elf, J.1
Berg, O.G.2
Ehrenberg, M.3
-
9
-
-
84879002382
-
Basic and applied uses of genome-Scale metabolic network reconstructions of Escherichia coli
-
McCloskey D, Palsson BO, Feist AM (2013) Basic and applied uses of genome-Scale metabolic network reconstructions of Escherichia coli. Mol Syst Biol 9:661.
-
(2013)
Mol Syst Biol
, vol.9
, pp. 661
-
-
McCloskey, D.1
Palsson, B.O.2
Feist, A.M.3
-
10
-
-
84858439602
-
Constraining the metabolic genotypephenotype relationship using a phylogeny of in silico methods
-
Lewis NE, Nagarajan H, Palsson BO (2012) Constraining the metabolic genotypephenotype relationship using a phylogeny of in silico methods. Nat Rev Microbiol 10(4):291-305.
-
(2012)
Nat Rev Microbiol
, vol.10
, Issue.4
, pp. 291-305
-
-
Lewis, N.E.1
Nagarajan, H.2
Palsson, B.O.3
-
11
-
-
0036708443
-
Dynamic flux balance analysis of diauxic growth in Escherichia coli
-
Mahadevan R, Edwards JS, Doyle FJ, 3rd (2002) Dynamic flux balance analysis of diauxic growth in Escherichia coli. Biophys J 83(3):1331-1340.
-
(2002)
Biophys J
, vol.83
, Issue.3
, pp. 1331-1340
-
-
Mahadevan, R.1
Edwards, J.S.2
Doyle III, F.J.3
-
12
-
-
44949247269
-
Dynamic analysis of integrated signaling, metabolic, and regulatory networks
-
Lee JM, Gianchandani EP, Eddy JA, Papin JA (2008) Dynamic analysis of integrated signaling, metabolic, and regulatory networks. PLOS Comput Biol 4(5):e1000086.
-
(2008)
PLOS Comput Biol
, vol.4
, Issue.5
-
-
Lee, J.M.1
Gianchandani, E.P.2
Eddy, J.A.3
Papin, J.A.4
-
13
-
-
51749113592
-
Integrating metabolic, transcriptional regulatory and signal transduction models in Escherichia coli
-
Covert MW, Xiao N, Chen TJ, Karr JR (2008) Integrating metabolic, transcriptional regulatory and signal transduction models in Escherichia coli. Bioinformatics 24(18):2044-2050.
-
(2008)
Bioinformatics
, vol.24
, Issue.18
, pp. 2044-2050
-
-
Covert, M.W.1
Xiao, N.2
Chen, T.J.3
Karr, J.R.4
-
14
-
-
84864258618
-
A whole-Cell computational model predicts phenotype from genotype
-
Karr JR, et al. (2012) A whole-Cell computational model predicts phenotype from genotype. Cell 150(2):389-401.
-
(2012)
Cell
, vol.150
, Issue.2
, pp. 389-401
-
-
Karr, J.R.1
-
15
-
-
84866056247
-
Silicon dreams of cells into symbols
-
Gunawardena J (2012) Silicon dreams of cells into symbols. Nat Biotechnol 30(9): 838-840.
-
(2012)
Nat Biotechnol
, vol.30
, Issue.9
, pp. 838-840
-
-
Gunawardena, J.1
-
16
-
-
0021370660
-
Costs of accuracy determined by a maximal growth rate constraint
-
Ehrenberg M, Kurland CG (1984) Costs of accuracy determined by a maximal growth rate constraint. Q Rev Biophys 17(1):45-82.
-
(1984)
Q Rev Biophys
, vol.17
, Issue.1
, pp. 45-82
-
-
Ehrenberg, M.1
Kurland, C.G.2
-
17
-
-
11244258180
-
Near-Critical behavior of aminoacyl-TRNA pools in E coli at rate-Limiting supply of amino acids
-
Elf J, Ehrenberg M (2005) Near-Critical behavior of aminoacyl-TRNA pools in E. coli at rate-Limiting supply of amino acids. Biophys J 88(1):132-146.
-
(2005)
Biophys J
, vol.88
, Issue.1
, pp. 132-146
-
-
Elf, J.1
Ehrenberg, M.2
-
21
-
-
0034691214
-
Stochastic focusing: Fluctuation-Enhanced sensitivity of intracellular regulation
-
Paulsson J, Berg OG, Ehrenberg M (2000) Stochastic focusing: Fluctuation-Enhanced sensitivity of intracellular regulation. Proc Natl Acad Sci USA 97(13):7148-7153.
-
(2000)
Proc Natl Acad Sci USA
, vol.97
, Issue.13
, pp. 7148-7153
-
-
Paulsson, J.1
Berg, O.G.2
Ehrenberg, M.3
-
22
-
-
50949119269
-
Regulatory control and the costs and benefits of biochemical noise
-
T-Anase-Nicola S, ten Wolde PR (2008) Regulatory control and the costs and benefits of biochemical noise. PLOS Comput Biol 4(8):e1000125.
-
(2008)
PLOS Comput Biol
, vol.4
, Issue.8
-
-
T-Anase-Nicola, S.1
Ten Wolde, P.R.2
-
23
-
-
85012688561
-
-
(Princeton Univ Press, Princeton)
-
Bellman R (1957) Dynamic Programming (Princeton Univ Press, Princeton).
-
(1957)
Dynamic Programming
-
-
Bellman, R.1
-
24
-
-
0029033413
-
Subunit structure of regulator proteins influences the design of gene circuitry: Analysis of perfectly coupled and completely uncoupled circuits
-
Hlavacek WS, Savageau MA (1995) Subunit structure of regulator proteins influences the design of gene circuitry: Analysis of perfectly coupled and completely uncoupled circuits. J Mol Biol 248(4):739-755.
-
(1995)
J Mol Biol
, vol.248
, Issue.4
, pp. 739-755
-
-
Hlavacek, W.S.1
Savageau, M.A.2
-
25
-
-
77955501572
-
Achieving optimal growth through product feedback inhibition in metabolism
-
Goyal S, Yuan J, Chen T, Rabinowitz JD, Wingreen NS (2010) Achieving optimal growth through product feedback inhibition in metabolism. PLOS Comput Biol 6(6): E1000802.
-
(2010)
PLOS Comput Biol
, vol.6
, Issue.6
-
-
Goyal, S.1
Yuan, J.2
Chen, T.3
Rabinowitz, J.D.4
Wingreen, N.S.5
-
26
-
-
0016201107
-
Optimal design of feedback control by inhibition
-
Savageau MA (1974) Optimal design of feedback control by inhibition. J Mol Evol 4(2):139-156.
-
(1974)
J Mol Evol
, vol.4
, Issue.2
, pp. 139-156
-
-
Savageau, M.A.1
-
27
-
-
0035365847
-
An integrated study of threonine-Pathway enzyme kinetics in Escherichia coli
-
Chassagnole C, Raïs B, Quentin E, Fell DA, Mazat JP (2001) An integrated study of threonine-Pathway enzyme kinetics in Escherichia coli. Biochem J 356(Pt 2):415-423.
-
(2001)
Biochem J
, vol.356
, Issue.PART 2
, pp. 415-423
-
-
Chassagnole, C.1
Raïs, B.2
Quentin, E.3
Fell, D.A.4
Mazat, J.P.5
-
28
-
-
84873410888
-
Characterization of the ribosome biogenesis landscape in E coli using quantitative mass spectrometry
-
Chen SS, Williamson JR (2013) Characterization of the ribosome biogenesis landscape in E. coli using quantitative mass spectrometry. J Mol Biol 425(4):767-779.
-
(2013)
J Mol Biol
, vol.425
, Issue.4
, pp. 767-779
-
-
Chen, S.S.1
Williamson, J.R.2
-
29
-
-
84864453787
-
The ribosome profiling strategy for monitoring translation in vivo by deep sequencing of ribosomeprotected mRNA fragments
-
Ingolia NT, Brar GA, Rouskin S, McGeachy AM, Weissman JS (2012) The ribosome profiling strategy for monitoring translation in vivo by deep sequencing of ribosomeprotected mRNA fragments. Nat Protoc 7(8):1534-1550.
-
(2012)
Nat Protoc
, vol.7
, Issue.8
, pp. 1534-1550
-
-
Ingolia, N.T.1
Brar, G.A.2
Rouskin, S.3
McGeachy, A.M.4
Weissman, J.S.5
-
31
-
-
0022467727
-
Regulation of in vivo transcription of the Escherichia coli K-12 metJBLF gene cluster
-
Kirby TW, Hindenach BR, Greene RC (1986) Regulation of in vivo transcription of the Escherichia coli K-12 metJBLF gene cluster. J Bacteriol 165(3):671-677.
-
(1986)
J Bacteriol
, vol.165
, Issue.3
, pp. 671-677
-
-
Kirby, T.W.1
Hindenach, B.R.2
Greene, R.C.3
-
32
-
-
0023644752
-
Purification of the cysB protein from Salmonella typhimurium
-
Miller BE, Kredich NM (1987) Purification of the cysB protein from Salmonella typhimurium. J Biol Chem 262(13):6006-6009.
-
(1987)
J Biol Chem
, vol.262
, Issue.13
, pp. 6006-6009
-
-
Miller, B.E.1
Kredich, N.M.2
-
33
-
-
0028092164
-
The arginine repressor of Escherichia coli
-
Maas WK (1994) The arginine repressor of Escherichia coli. Microbiol Rev 58(4): 631-640.
-
(1994)
Microbiol Rev
, vol.58
, Issue.4
, pp. 631-640
-
-
Maas, W.K.1
-
34
-
-
0015163742
-
The adaptive responses of Escherichia coli to a feast and famine existence
-
Koch AL (1971) The adaptive responses of Escherichia coli to a feast and famine existence. Adv Microb Physiol 6:147-217.
-
(1971)
Adv Microb Physiol
, vol.6
, pp. 147-217
-
-
Koch, A.L.1
-
35
-
-
77955114279
-
Genomics E coli, what a noisy bug
-
Tyagi S (2010) Genomics. E. coli, what a noisy bug. Science 329(5991):518-519.
-
(2010)
Science
, vol.329
, Issue.5991
, pp. 518-519
-
-
Tyagi, S.1
-
36
-
-
25444489027
-
Phenotypic diversity, population growth, and information in fluctuating environments
-
Kussell E, Leibler S (2005) Phenotypic diversity, population growth, and information in fluctuating environments. Science 309(5743):2075-2078.
-
(2005)
Science
, vol.309
, Issue.5743
, pp. 2075-2078
-
-
Kussell, E.1
Leibler, S.2
|