-
1
-
-
42549159705
-
-
Organization for Economic Cooperation and Development (OECD Publishing, Paris)
-
Organization for Economic Cooperation and Development (2009) The Bioeconomy to 2030: Designing a Policy Agenda (OECD Publishing, Paris).
-
(2009)
The Bioeconomy to 2030: Designing A Policy Agenda
-
-
-
2
-
-
41349098538
-
Laying the foundations for a bio-economy
-
Carlson R (2007) Laying the foundations for a bio-economy. Syst Synth Biol 1(3): 109-117.
-
(2007)
Syst Synth Biol
, vol.1
, Issue.3
, pp. 109-117
-
-
Carlson, R.1
-
3
-
-
78649716727
-
Manufacturing molecules through metabolic engineering
-
Keasling JD (2010) Manufacturing molecules through metabolic engineering. Science 330(6009):1355-1358.
-
(2010)
Science
, vol.330
, Issue.6009
, pp. 1355-1358
-
-
Keasling, J.D.1
-
4
-
-
68949161807
-
Programming cells by multiplex genome engineering and accelerated evolution
-
Wang HH, et al. (2009) Programming cells by multiplex genome engineering and accelerated evolution. Nature 460(7257):894-898.
-
(2009)
Nature
, vol.460
, Issue.7257
, pp. 894-898
-
-
Wang, H.H.1
-
5
-
-
71849115077
-
Genome engineering
-
Carr PA, Church GM (2009) Genome engineering. Nat Biotechnol 27(12):1151-1162.
-
(2009)
Nat Biotechnol
, vol.27
, Issue.12
, pp. 1151-1162
-
-
Carr, P.A.1
Church, G.M.2
-
6
-
-
84860803588
-
Refactoring the nitrogen fixation gene cluster from Klebsiella oxytoca
-
Temme K, Zhao D, Voigt CA (2012) Refactoring the nitrogen fixation gene cluster from Klebsiella oxytoca. Proc Natl Acad Sci USA 109(18):7085-7090.
-
(2012)
Proc Natl Acad Sci USA
, vol.109
, Issue.18
, pp. 7085-7090
-
-
Temme, K.1
Zhao, D.2
Voigt, C.A.3
-
7
-
-
67549145283
-
A synthetic genetic edge detection program
-
Tabor JJ, et al. (2009) A synthetic genetic edge detection program. Cell 137(7): 1272-1281.
-
(2009)
Cell
, vol.137
, Issue.7
, pp. 1272-1281
-
-
Tabor, J.J.1
-
8
-
-
84861865655
-
Rewritable digital data storage in live cells via engineered control of recombination directionality
-
Bonnet J, Subsoontorn P, Endy D (2012) Rewritable digital data storage in live cells via engineered control of recombination directionality. Proc Natl Acad Sci USA 109(23): 8884-8889.
-
(2012)
Proc Natl Acad Sci USA
, vol.109
, Issue.23
, pp. 8884-8889
-
-
Bonnet, J.1
Subsoontorn, P.2
Endy, D.3
-
9
-
-
0038391517
-
Engineering a mevalonate pathway in Escherichia coli for production of terpenoids
-
Martin VJJ, Pitera DJ, Withers ST, Newman JD, Keasling JD (2003) Engineering a mevalonate pathway in Escherichia coli for production of terpenoids. Nat Biotechnol 21(7):796-802.
-
(2003)
Nat Biotechnol
, vol.21
, Issue.7
, pp. 796-802
-
-
Martin, V.J.J.1
Pitera, D.J.2
Withers, S.T.3
Newman, J.D.4
Keasling, J.D.5
-
10
-
-
33645870422
-
Production of the antimalarial drug precursor artemisinic acid in engineered yeast
-
Ro D-K, et al. (2006) Production of the antimalarial drug precursor artemisinic acid in engineered yeast. Nature 440(7086):940-943.
-
(2006)
Nature
, vol.440
, Issue.7086
, pp. 940-943
-
-
Ro, D.-K.1
-
11
-
-
75749125061
-
Microbial production of fatty-acid-derived fuels and chemicals from plant biomass
-
Steen EJ, et al. (2010) Microbial production of fatty-acid-derived fuels and chemicals from plant biomass. Nature 463(7280):559-562.
-
(2010)
Nature
, vol.463
, Issue.7280
, pp. 559-562
-
-
Steen, E.J.1
-
12
-
-
71849118573
-
High-resolution analysis of DNA regulatory elements by synthetic saturation mutagenesis
-
Patwardhan RP, et al. (2009) High-resolution analysis of DNA regulatory elements by synthetic saturation mutagenesis. Nat Biotechnol 27(12):1173-1175.
-
(2009)
Nat Biotechnol
, vol.27
, Issue.12
, pp. 1173-1175
-
-
Patwardhan, R.P.1
-
13
-
-
77952706498
-
Using deep sequencing to characterize the biophysical mechanism of a transcriptional regulatory sequence
-
Kinney JB, Murugan A, Callan CG, Jr., Cox EC (2010) Using deep sequencing to characterize the biophysical mechanism of a transcriptional regulatory sequence. Proc Natl Acad Sci USA 107(20):9158-9163.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, Issue.20
, pp. 9158-9163
-
-
Kinney, J.B.1
Murugan, A.2
Callan Jr., C.G.3
Cox, E.C.4
-
14
-
-
70349964350
-
Automated design of synthetic ribosome binding sites to control protein expression
-
Salis HM, Mirsky EA, Voigt CA (2009) Automated design of synthetic ribosome binding sites to control protein expression. Nat Biotechnol 27(10):946-950.
-
(2009)
Nat Biotechnol
, vol.27
, Issue.10
, pp. 946-950
-
-
Salis, H.M.1
Mirsky, E.A.2
Voigt, C.A.3
-
15
-
-
0028303468
-
Quantitative analysis of ribosome binding sites in E coli
-
Barrick D, et al. (1994) Quantitative analysis of ribosome binding sites in E. coli. Nucleic Acids Res 22(7):1287-1295.
-
(1994)
Nucleic Acids Res
, vol.22
, Issue.7
, pp. 1287-1295
-
-
Barrick, D.1
-
16
-
-
77952611328
-
Mathematical modeling of translation initiation for the estimation of its efficiency to computationally design mRNA sequences with desired expression levels in prokaryotes
-
Na D, Lee S, Lee D (2010) Mathematical modeling of translation initiation for the estimation of its efficiency to computationally design mRNA sequences with desired expression levels in prokaryotes. BMC Syst Biol 4:71.
-
(2010)
BMC Syst Biol
, vol.4
, pp. 71
-
-
Na, D.1
Lee, S.2
Lee, D.3
-
17
-
-
33745454125
-
Synthetic biology: New engineering rules for an emerging discipline
-
Andrianantoandro E, Basu S, Karig DK, Weiss R (2006) Synthetic biology: New engineering rules for an emerging discipline. Mol Syst Biol 2:2006.0028.
-
(2006)
Mol Syst Biol
, vol.2
, Issue.2006
, pp. 0028
-
-
Andrianantoandro, E.1
Basu, S.2
Karig, D.K.3
Weiss, R.4
-
18
-
-
46949110597
-
Setting the standard in synthetic biology
-
Arkin A (2008) Setting the standard in synthetic biology. Nat Biotechnol 26(7): 771-774.
-
(2008)
Nat Biotechnol
, vol.26
, Issue.7
, pp. 771-774
-
-
Arkin, A.1
-
20
-
-
46949091517
-
Refinement and standardization of synthetic biological parts and devices
-
Canton B, Labno A, Endy D (2008) Refinement and standardization of synthetic biological parts and devices. Nat Biotechnol 26(7):787-793.
-
(2008)
Nat Biotechnol
, vol.26
, Issue.7
, pp. 787-793
-
-
Canton, B.1
Labno, A.2
Endy, D.3
-
21
-
-
28544451327
-
Foundations for engineering biology
-
Endy D (2005) Foundations for engineering biology. Nature 438(7067):449-453.
-
(2005)
Nature
, vol.438
, Issue.7067
, pp. 449-453
-
-
Endy, D.1
-
22
-
-
33751013018
-
Synthetic biology - Putting engineering into biology
-
Heinemann M, Panke S (2006) Synthetic biology - Putting engineering into biology. Bioinformatics 22(22):2790-2799.
-
(2006)
Bioinformatics
, vol.22
, Issue.22
, pp. 2790-2799
-
-
Heinemann, M.1
Panke, S.2
-
23
-
-
37349009767
-
Synthetic biology: Promises and challenges
-
Serrano L (2007) Synthetic biology: Promises and challenges. Mol Syst Biol 3:158.
-
(2007)
Mol Syst Biol
, vol.3
, pp. 158
-
-
Serrano, L.1
-
24
-
-
36248980394
-
Accurate prediction of gene feedback circuit behavior from component properties
-
Rosenfeld N, Young JW, Alon U, Swain PS, Elowitz MB (2007) Accurate prediction of gene feedback circuit behavior from component properties. Mol Syst Biol 3:143.
-
(2007)
Mol Syst Biol
, vol.3
, pp. 143
-
-
Rosenfeld, N.1
Young, J.W.2
Alon, U.3
Swain, P.S.4
Elowitz, M.B.5
-
25
-
-
24644515752
-
Tuning genetic control through promoter engineering
-
Alper H, Fischer C, Nevoigt E, Stephanopoulos G (2005) Tuning genetic control through promoter engineering. Proc Natl Acad Sci USA 102(36):12678-12683.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, Issue.36
, pp. 12678-12683
-
-
Alper, H.1
Fischer, C.2
Nevoigt, E.3
Stephanopoulos, G.4
-
26
-
-
84875720517
-
Precise and reliable gene expression via standard transcription and translation initiation elements
-
Mutalik VK, et al. (2013) Precise and reliable gene expression via standard transcription and translation initiation elements. Nat Methods 10(4):354-360.
-
(2013)
Nat Methods
, vol.10
, Issue.4
, pp. 354-360
-
-
Mutalik, V.K.1
-
27
-
-
84875725658
-
Quantitative estimation of activity and quality for collections of functional genetic elements
-
Mutalik VK, et al. (2013) Quantitative estimation of activity and quality for collections of functional genetic elements. Nat Methods 10(4):347-353.
-
(2013)
Nat Methods
, vol.10
, Issue.4
, pp. 347-353
-
-
Mutalik, V.K.1
-
28
-
-
84867389802
-
RNA processing enables predictable programming of gene expression
-
Qi L, Haurwitz RE, Shao W, Doudna JA, Arkin AP (2012) RNA processing enables predictable programming of gene expression. Nat Biotechnol 30(10):1002-1006.
-
(2012)
Nat Biotechnol
, vol.30
, Issue.10
, pp. 1002-1006
-
-
Qi, L.1
Haurwitz, R.E.2
Shao, W.3
Doudna, J.A.4
Arkin, A.P.5
-
29
-
-
84865278391
-
Successes and failures in modular genetic engineering
-
Kittleson JT, Wu GC, Anderson JC (2012) Successes and failures in modular genetic engineering. Curr Opin Chem Biol 16(3-4):329-336.
-
(2012)
Curr Opin Chem Biol
, vol.16
, Issue.3-4
, pp. 329-336
-
-
Kittleson, J.T.1
Wu, G.C.2
Anderson, J.C.3
-
30
-
-
77952530236
-
Synthesis of high-quality libraries of long (150mer) oligonucleotides by a novel depurination controlled process
-
LeProust EM, et al. (2010) Synthesis of high-quality libraries of long (150mer) oligonucleotides by a novel depurination controlled process. Nucleic Acids Res 38(8): 2522-2540.
-
(2010)
Nucleic Acids Res
, vol.38
, Issue.8
, pp. 2522-2540
-
-
Leproust, E.M.1
-
31
-
-
30544433196
-
Engineering and characterization of a superfolder green fluorescent protein
-
Pédelacq J-D, Cabantous S, Tran T, Terwilliger TC, Waldo GS (2006) Engineering and characterization of a superfolder green fluorescent protein. Nat Biotechnol 24(1): 79-88.
-
(2006)
Nat Biotechnol
, vol.24
, Issue.1
, pp. 79-88
-
-
Pédelacq, J.-D.1
Cabantous, S.2
Tran, T.3
Terwilliger, T.C.4
Waldo, G.S.5
-
32
-
-
33747479549
-
Novel chromophores and buried charges control color in mFruits
-
Shu X, Shaner NC, Yarbrough CA, Tsien RY, Remington SJ (2006) Novel chromophores and buried charges control color in mFruits. Biochemistry 45(32):9639-9647.
-
(2006)
Biochemistry
, vol.45
, Issue.32
, pp. 9639-9647
-
-
Shu, X.1
Shaner, N.C.2
Yarbrough, C.A.3
Tsien, R.Y.4
Remington, S.J.5
-
33
-
-
77954688643
-
A synthetic three-color scaffold for monitoring genetic regulation and noise
-
Cox RS, 3rd, Dunlop MJ, Elowitz MB (2010) A synthetic three-color scaffold for monitoring genetic regulation and noise. J Biol Eng 4:10.
-
(2010)
J Biol Eng
, vol.4
, pp. 10
-
-
Cox III, R.S.1
Dunlop, M.J.2
Elowitz, M.B.3
-
34
-
-
84862984796
-
Manipulating nucleosome disfavoring sequences allows fine-tune regulation of gene expression in yeast
-
Raveh-Sadka T, et al. (2012) Manipulating nucleosome disfavoring sequences allows fine-tune regulation of gene expression in yeast. Nat Genet 44(7):743-750.
-
(2012)
Nat Genet
, vol.44
, Issue.7
, pp. 743-750
-
-
Raveh-Sadka, T.1
-
35
-
-
84862002321
-
Inferring gene regulatory logic from high-throughput measurements of thousands of systematically designed promoters
-
Sharon E, et al. (2012) Inferring gene regulatory logic from high-throughput measurements of thousands of systematically designed promoters. Nat Biotechnol 30(6): 521-530.
-
(2012)
Nat Biotechnol
, vol.30
, Issue.6
, pp. 521-530
-
-
Sharon, E.1
-
36
-
-
0026663105
-
Interdependence of translation, transcription and mRNA degradation in the lacZ gene
-
Yarchuk O, Jacques N, Guillerez J, Dreyfus M (1992) Interdependence of translation, transcription and mRNA degradation in the lacZ gene. J Mol Biol 226(3):581-596.
-
(1992)
J Mol Biol
, vol.226
, Issue.3
, pp. 581-596
-
-
Yarchuk, O.1
Jacques, N.2
Guillerez, J.3
Dreyfus, M.4
-
37
-
-
0027257206
-
IS10 mRNA stability and steady state levels in Escherichia coli: Indirect effects of translation and role of rne function
-
Jain C, Kleckner N (1993) IS10 mRNA stability and steady state levels in Escherichia coli: Indirect effects of translation and role of rne function. Mol Microbiol 9(2): 233-247.
-
(1993)
Mol Microbiol
, vol.9
, Issue.2
, pp. 233-247
-
-
Jain, C.1
Kleckner, N.2
-
38
-
-
0042337276
-
Effect of translational signals on mRNA decay in Bacillus subtilis
-
Sharp JS, Bechhofer DH (2003) Effect of translational signals on mRNA decay in Bacillus subtilis. J Bacteriol 185(18):5372-5379.
-
(2003)
J Bacteriol
, vol.185
, Issue.18
, pp. 5372-5379
-
-
Sharp, J.S.1
Bechhofer, D.H.2
-
39
-
-
0035986640
-
A 5′ stem-loop and ribosome binding but not translation are important for the stability of Bacillus subtilis aprE leader mRNA
-
Hambraeus G, Karhumaa K, Rutberg B (2002) A 5′ stem-loop and ribosome binding but not translation are important for the stability of Bacillus subtilis aprE leader mRNA. Microbiology 148(Pt 6):1795-1803.
-
(2002)
Microbiology
, vol.148
, Issue.PART 6
, pp. 1795-1803
-
-
Hambraeus, G.1
Karhumaa, K.2
Rutberg, B.3
-
40
-
-
0031824037
-
The stability of mRNA from the gsiB gene of Bacillus subtilis is dependent on the presence of a strong ribosome binding site
-
Jürgen B, Schweder T, Hecker M (1998) The stability of mRNA from the gsiB gene of Bacillus subtilis is dependent on the presence of a strong ribosome binding site. Mol Gen Genet 258(5):538-545.
-
(1998)
Mol Gen Genet
, vol.258
, Issue.5
, pp. 538-545
-
-
Jürgen, B.1
Schweder, T.2
Hecker, M.3
-
41
-
-
0028176680
-
An efficient Shine-Dalgarno sequence but not translation is necessary for lacZ mRNA stability in Escherichia coli
-
Wagner LA, Gesteland RF, Dayhuff TJ, Weiss RB (1994) An efficient Shine-Dalgarno sequence but not translation is necessary for lacZ mRNA stability in Escherichia coli. J Bacteriol 176(6):1683-1688.
-
(1994)
J Bacteriol
, vol.176
, Issue.6
, pp. 1683-1688
-
-
Wagner, L.A.1
Gesteland, R.F.2
Dayhuff, T.J.3
Weiss, R.B.4
-
42
-
-
0031951386
-
MRNA stabilization by the ompA 5′ untranslated region: Two protective elements hinder distinct pathways for mRNA degradation
-
Arnold TE, Yu J, Belasco JG (1998) mRNA stabilization by the ompA 5′ untranslated region: Two protective elements hinder distinct pathways for mRNA degradation. RNA 4(3):319-330.
-
(1998)
RNA
, vol.4
, Issue.3
, pp. 319-330
-
-
Arnold, T.E.1
Yu, J.2
Belasco, J.G.3
-
43
-
-
77649198142
-
A universal trend of reduced mRNA stability near the translation- initiation site in prokaryotes and eukaryotes
-
Gu W, Zhou T, Wilke CO (2010) A universal trend of reduced mRNA stability near the translation-initiation site in prokaryotes and eukaryotes. PLOS Comput Biol 6(2): e1000664.
-
(2010)
PLOS Comput Biol
, vol.6
, Issue.2
-
-
Gu, W.1
Zhou, T.2
Wilke, C.O.3
-
44
-
-
77957240693
-
Multifactorial determinants of protein expression in prokaryotic open reading frames
-
Allert M, Cox JC, Hellinga HW (2010) Multifactorial determinants of protein expression in prokaryotic open reading frames. J Mol Biol 402(5):905-918.
-
(2010)
J Mol Biol
, vol.402
, Issue.5
, pp. 905-918
-
-
Allert, M.1
Cox, J.C.2
Hellinga, H.W.3
-
45
-
-
64849114915
-
Coding-sequence determinants of gene expression in Escherichia coli
-
Kudla G, Murray AW, Tollervey D, Plotkin JB (2009) Coding-sequence determinants of gene expression in Escherichia coli. Science 324(5924):255-258.
-
(2009)
Science
, vol.324
, Issue.5924
, pp. 255-258
-
-
Kudla, G.1
Murray, A.W.2
Tollervey, D.3
Plotkin, J.B.4
-
46
-
-
70349199628
-
Design parameters to control synthetic gene expression in Escherichia coli
-
Welch M, et al. (2009) Design parameters to control synthetic gene expression in Escherichia coli. PLoS ONE 4(9):e7002.
-
(2009)
PLoS ONE
, vol.4
, Issue.9
-
-
Welch, M.1
-
47
-
-
85081797211
-
-
Accessed February 1, 2013
-
St. John J (2012) SeqPrep. Available at https://github.com/jstjohn/ SeqPrep. Accessed February 1, 2013.
-
(2012)
SeqPrep
-
-
St. John, J.1
-
48
-
-
62349130698
-
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
-
Langmead B, Trapnell C, Pop M, Salzberg SL (2009) Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 10(3):R25.
-
(2009)
Genome Biol
, vol.10
, Issue.3
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
Salzberg, S.L.4
-
49
-
-
84857807072
-
-
Springer, New York
-
Wickham H (2009) ggplot2 (Springer, New York).
-
(2009)
Ggplot2
-
-
Wickham, H.1
|