-
1
-
-
0037067641
-
Evolution of the gene network underlying wing polyphenism in ants
-
DOI 10.1126/science.1071468
-
Abouheif E, Wray GA. 2002. Evolution of the gene network underlying wing polyphenism in ants. Science 297:249-252. (Pubitemid 34761286)
-
(2002)
Science
, vol.297
, Issue.5579
, pp. 249-252
-
-
Abouheif, E.1
Wray, G.A.2
-
2
-
-
63449107173
-
A general modular framework for gene set enrichment analysis
-
Ackermann M, Strimmer K. 2009. A general modular framework for gene set enrichment analysis. BMC Bioinformatics 10:47.
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 47
-
-
Ackermann, M.1
Strimmer, K.2
-
3
-
-
0034708480
-
The genome sequence of Drosophila melanogaster
-
DOI 10.1126/science.287.5461.2185
-
Adams MD, Celniker SE, Holt RA, Evans CA, Gocayne JD, Amanatides PG, Scherer SE, Li PW, Hoskins RA, Galle RF, et al. 2000. The genome sequence of Drosophila melanogaster. Science 287:2185-2195. (Pubitemid 30177013)
-
(2000)
Science
, vol.287
, Issue.5461
, pp. 2185-2195
-
-
Adams, M.D.1
Celniker, S.E.2
Holt, R.A.3
Evans, C.A.4
Gocayne, J.D.5
Amanatides, P.G.6
Scherer, S.E.7
Li, P.W.8
Hoskins, R.A.9
Galle, R.F.10
George, R.A.11
Lewis, S.E.12
Richards, S.13
Ashburner, M.14
Henderson, S.N.15
Sutton, G.G.16
Wortman, J.R.17
Yandell, M.D.18
Zhang, Q.19
Chen, L.X.20
Brandon, R.C.21
Rogers, Y.C.22
Blazej, R.G.23
Champe, M.24
Pfeiffer, B.D.25
Wan, K.H.26
Doyle, C.27
Baxter, E.G.28
Helt, G.29
Nelson, C.R.30
Gabor Miklos, G.L.31
Abril, J.F.32
Agbayani, A.33
An, H.-J.34
Andrews-Pfannkoch, C.35
Baldwin, D.36
Ballew, R.M.37
Basu, A.38
Baxendale, J.39
Bayraktaroglu, L.40
Beasley, E.M.41
Beeson, K.Y.42
Benos, P.V.43
Berman, B.P.44
Bhandari, D.45
Bolshakov, S.46
Borkova, D.47
Botchan, M.R.48
Bouck, J.49
Brokstein, P.50
Brottier, P.51
Burtis, K.C.52
Busam, D.A.53
Butler, H.54
Cadieu, E.55
Center, A.56
Chandra, I.57
Cherry, J.M.58
Cawley, S.59
Dahlke, C.60
Davenport, L.B.61
Davies, P.62
De Pablos, B.63
Delcher, A.64
Deng, Z.65
Mays, A.D.66
Dew, I.67
Dietz, S.M.68
Dodson, K.69
Doup, L.E.70
Downes, M.71
Dugan-Rocha, S.72
Dunkov, B.C.73
Dunn, P.74
Durbin, K.J.75
Evangelista, C.C.76
Ferraz, C.77
Ferriera, S.78
Fleischmann, W.79
Fosler, C.80
Gabrielian, A.E.81
Garg, N.S.82
Gelbart, W.M.83
Glasser, K.84
Glodek, A.85
Gong, F.86
Gorrell, J.H.87
Gu, Z.88
Guan, P.89
Harris, M.90
Harris, N.L.91
Harvey, D.92
Heiman, T.J.93
Hernandez, J.R.94
Houck, J.95
Hostin, D.96
Houston, K.A.97
Howland, T.J.98
Wei, M.-H.99
more..
-
4
-
-
33745626459
-
Improved scoring of functional groups from gene expression data by decorrelating GO graph structure
-
DOI 10.1093/bioinformatics/btl140
-
Alexa A, Rahnenfuhrer J, Lengauer T. 2006. Improved scoring of functional groups from gene expression data by decorrelating GO graph structure. Bioinformatics 22:1600-1607. (Pubitemid 43985293)
-
(2006)
Bioinformatics
, vol.22
, Issue.13
, pp. 1600-1607
-
-
Alexa, A.1
Rahnenfuhrer, J.2
Lengauer, T.3
-
5
-
-
29244448340
-
Microarray data analysis: From disarray to consolidation and consensus
-
DOI 10.1038/nrg1749
-
Allison DB, Cui X, Page GP, Sabripour M. 2006. Microarray data analysis: From disarray to consolidation and consensus. Nat Rev Genet. 7: 55-65. (Pubitemid 41828948)
-
(2006)
Nature Reviews Genetics
, vol.7
, Issue.1
, pp. 55-65
-
-
Allison, D.B.1
Cui, X.2
Page, G.P.3
Sabripour, M.4
-
6
-
-
0036305588
-
The regulatory anatomy of honeybee lifespan
-
DOI 10.1006/jtbi.2002.2545
-
Amdam GV, Omholt SW. 2002. The regulatory anatomy of honeybee lifespan. J Theor Biol. 216:209-228. (Pubitemid 34748049)
-
(2002)
Journal of Theoretical Biology
, vol.216
, Issue.2
, pp. 209-228
-
-
Amdam, G.V.1
Omholt, S.W.2
-
7
-
-
34547793042
-
Multiple hypothesis testing to detect lineages under positive selection that affects only a few sites
-
DOI 10.1093/molbev/msm042
-
Anisimova M, Yang Z. 2007. Multiple hypothesis testing to detect lineages under positive selection that affects only a few sites. Mol Biol Evol. 24:1219-1228. (Pubitemid 47343648)
-
(2007)
Molecular Biology and Evolution
, vol.24
, Issue.5
, pp. 1219-1228
-
-
Anisimova, M.1
Yang, Z.2
-
8
-
-
0034069495
-
Gene ontology: Tool for the unification of biology the gene ontology consortium
-
Ashburner M, Ball CA, Blake JA, Botstein D, Butler H, Cherry JM, Davis AP, Dolinski K, Dwight SS, Eppig JT, et al. 2000. Gene ontology: Tool for the unification of biology. The Gene Ontology Consortium. Nat Genet. 25:25-29.
-
(2000)
Nat Genet.
, vol.25
, pp. 25-29
-
-
Ashburner, M.1
Ball, C.A.2
Blake, J.A.3
Botstein, D.4
Butler, H.5
Cherry, J.M.6
Davis, A.P.7
Dolinski, K.8
Dwight, S.S.9
Eppig, J.T.10
-
10
-
-
31844440878
-
Functional genomics reveals genes involved in protein secretion and Golgi organization
-
DOI 10.1038/nature04377, PII NATURE04377
-
Bard F, Casano L, Mallabiabarrena A, Wallace E, Saito K, Kitayama H, Guizzunti G, Hu Y, Wendler F, Dasgupta R, et al. 2006. Functional genomics reveals genes involved in protein secretion and Golgi organization. Nature 439:604-607. (Pubitemid 43185385)
-
(2006)
Nature
, vol.439
, Issue.7076
, pp. 604-607
-
-
Bard, F.1
Casano, L.2
Mallabiabarrena, A.3
Wallace, E.4
Saito, K.5
Kitayama, H.6
Guizzunti, G.7
Hu, Y.8
Wendler, F.9
Das Gupta, R.10
Perrimon, N.11
Malhotra, V.12
-
11
-
-
33646253454
-
Population size does not influence mitochondrial genetic diversity in animals
-
Bazin E, Glemin S, Galtier N. 2006. Population size does not influence mitochondrial genetic diversity in animals. Science 312:570-572.
-
(2006)
Science
, vol.312
, pp. 570-572
-
-
Bazin, E.1
Glemin, S.2
Galtier, N.3
-
12
-
-
84864398902
-
Major role of positive selection in the evolution of conservative segments of Drosophila proteins
-
Bazykin GA, Kondrashov AS. 2012. Major role of positive selection in the evolution of conservative segments of Drosophila proteins. Proc R Soc B Biol Sci. 279:3409-3417.
-
(2012)
Proc R Soc B Biol Sci.
, vol.279
, pp. 3409-3417
-
-
Bazykin, G.A.1
Kondrashov, A.S.2
-
13
-
-
84880279979
-
A doublecortin containing microtubule-Associated protein is implicated in mechanotransduction in Drosophila sensory cilia
-
Bechstedt S, Albert JT, Kreil DP, Muller-Reichert T, Gopfert MC, Howard J. 2010. A doublecortin containing microtubule-Associated protein is implicated in mechanotransduction in Drosophila sensory cilia. Nat Commun. 1:11.
-
(2010)
Nat Commun.
, vol.1
, pp. 11
-
-
Bechstedt, S.1
Albert, J.T.2
Kreil, D.P.3
Muller-Reichert, T.4
Gopfert, M.C.5
Howard, J.6
-
14
-
-
56849110119
-
COPI complex is a regulator of lipid homeostasis
-
Beller M, Sztalryd C, Southall N, Bell M, Jackle H, Auld DS, Oliver B. 2008. COPI complex is a regulator of lipid homeostasis. PLoS Biol. 6:e292.
-
(2008)
PLoS Biol.
, vol.6
-
-
Beller, M.1
Sztalryd, C.2
Southall, N.3
Bell, M.4
Jackle, H.5
Auld, D.S.6
Oliver, B.7
-
15
-
-
0001677717
-
Controlling the false discovery rate: A practical and powerful approach to multiple testing
-
Benjamini Y, Hochberg Y. 1995. Controlling the false discovery rate: A practical and powerful approach to multiple testing. J R Stat Soc Ser B Methodol. 57:289-300.
-
(1995)
J R Stat Soc Ser B Methodol.
, vol.57
, pp. 289-300
-
-
Benjamini, Y.1
Hochberg, Y.2
-
16
-
-
84883454605
-
MITOS: Improved de novo metazoan mitochondrial genome annotation
-
Bernt M, Donath A, Juhling F, Externbrink F, Florentz C, Fritzsch G, Putz J, Middendorf M, Stadler PF. 2012. MITOS: Improved de novo metazoan mitochondrial genome annotation. Mol Phylogenet Evol. 69: 313-319.
-
(2012)
Mol Phylogenet Evol.
, vol.69
, pp. 313-319
-
-
Bernt, M.1
Donath, A.2
Juhling, F.3
Externbrink, F.4
Florentz, C.5
Fritzsch, G.6
Putz, J.7
Middendorf, M.8
Stadler, P.F.9
-
17
-
-
33646237351
-
Novel guanine nucleotide exchange factor GEFmeso of Drosophila melanogaster interacts with Ral and Rho GTPase Cdc42
-
DOI 10.1096/fj.05-5376com
-
Blanke S, Jackle H. 2006. Novel guanine nucleotide exchange factor GEFmeso of Drosophila melanogaster interacts with Ral and Rho GTPase Cdc42. FASEB J. 20:683-691. (Pubitemid 44933312)
-
(2006)
FASEB Journal
, vol.20
, Issue.6
, pp. 683-691
-
-
Blanke, S.1
Jackle, H.2
-
18
-
-
0035341502
-
A novel member of the Ig superfamily, turtle, is a CNS-specific protein required for coordinated motor control
-
Bodily KD, Morrison CM, Renden RB, Broadie K. 2001. A novel member of the Ig superfamily, turtle, is a CNS-specific protein required for coordinated motor control. J Neurosci. 21:3113-3125. (Pubitemid 32323493)
-
(2001)
Journal of Neuroscience
, vol.21
, Issue.9
, pp. 3113-3125
-
-
Bodily, K.D.1
Morrison, C.M.2
Renden, R.B.3
Broadie, K.4
-
19
-
-
77956109363
-
Genomic comparison of the ants Camponotus floridanus and Harpegnathos saltator
-
Bonasio R, Zhang G, Ye C, Mutti NS, Fang X, Qin N, Donahue G, Yang P, Li Q, Li C, et al. 2010. Genomic comparison of the ants Camponotus floridanus and Harpegnathos saltator. Science 329:1068-1071.
-
(2010)
Science
, vol.329
, pp. 1068-1071
-
-
Bonasio, R.1
Zhang, G.2
Ye, C.3
Mutti, N.S.4
Fang, X.5
Qin, N.6
Donahue, G.7
Yang, P.8
Li, Q.9
Li, C.10
-
20
-
-
35248857403
-
Efficient likelihood computations with nonreversible models of evolution
-
Boussau B, Gouy M. 2006. Efficient likelihood computations with nonreversible models of evolution. Syst Biol. 55:756-768.
-
(2006)
Syst Biol.
, vol.55
, pp. 756-768
-
-
Boussau, B.1
Gouy, M.2
-
21
-
-
33845341420
-
Evaluating alternative hypotheses for the early evolution and diversification of ants
-
DOI 10.1073/pnas.0605858103
-
Brady SG, Schultz TR, Fisher BL, Ward PS. 2006. Evaluating alternative hypotheses for the early evolution and diversification of ants. Proc Natl Acad Sci U S A. 103:18172-18177. (Pubitemid 44871631)
-
(2006)
Proceedings of the National Academy of Sciences of the United States of America
, vol.103
, Issue.48
, pp. 18172-18177
-
-
Brady, S.G.1
Schultz, T.R.2
Fisher, B.L.3
Ward, P.S.4
-
22
-
-
77957376759
-
Transcriptional regulation by CHIP/LDB complexes
-
Bronstein R, Levkovitz L, Yosef N, Yanku M, Ruppin E, Sharan R, Westphal H, Oliver B, Segal D. 2010. Transcriptional regulation by CHIP/LDB complexes. PLoS Genet. 6:e1001063.
-
(2010)
PLoS Genet.
, vol.6
-
-
Bronstein, R.1
Levkovitz, L.2
Yosef, N.3
Yanku, M.4
Ruppin, E.5
Sharan, R.6
Westphal, H.7
Oliver, B.8
Segal, D.9
-
23
-
-
33748183184
-
Gene loss and evolutionary rates following whole-genome duplication in teleost fishes
-
DOI 10.1093/molbev/msl049
-
Brunet FG, Crollius HR, Paris M, Aury JM, Gibert P, Jaillon O, Laudet V, Robinson-Rechavi M. 2006. Gene loss and evolutionary rates following whole-genome duplication in teleost fishes. Mol Biol Evol. 23: 1808-1816. (Pubitemid 44309775)
-
(2006)
Molecular Biology and Evolution
, vol.23
, Issue.9
, pp. 1808-1816
-
-
Brunet, F.G.1
Crollius, H.R.2
Paris, M.3
Aury, J.-M.4
Gibert, P.5
Jaillon, O.6
Laudet, V.7
Robinson-Rechavi, M.8
-
24
-
-
4344696179
-
Ageing studies on bats: A review
-
DOI 10.1023/B:BGEN.0000038022.65024.d8
-
Brunet-Rossinni A, Austad S. 2004. Ageing studies on bats: A review. Biogerontology 5:211-222. (Pubitemid 39157986)
-
(2004)
Biogerontology
, vol.5
, Issue.4
, pp. 211-222
-
-
Brunet-Rossinni, A.K.1
Austad, S.N.2
-
25
-
-
0347359103
-
Reduced free-radical production and extreme longevity in the little brown bat (Myotis lucifugus) versus two nonflying mammals
-
Brunet-Rossinni AK. 2004. Reduced free-radical production and extreme longevity in the little brown bat (Myotis lucifugus) versus two nonflying mammals. Mech Ageing Dev. 125:11-20.
-
(2004)
Mech Ageing Dev.
, vol.125
, pp. 11-20
-
-
Brunet-Rossinni, A.K.1
-
26
-
-
84867582254
-
Evolution of immune proteins in insects
-
Chichester (NH): John Wiley & Sons, Ltd
-
Bulmer MS. 2010. Evolution of immune proteins in insects. Encyclopedia of life sciences (ELS). Chichester (NH): John Wiley & Sons, Ltd.
-
(2010)
Encyclopedia of life sciences (ELS)
-
-
Bulmer, M.S.1
-
27
-
-
84867580162
-
A disproportionate role for mtDNA in Dobzhansky-Muller incompatibilities?
-
Burton RS, Barreto FS 2012. A disproportionate role for mtDNA in Dobzhansky-Muller incompatibilities? Mol Ecol. 21: 4942-4957.
-
(2012)
Mol Ecol.
, vol.21
, pp. 4942-4957
-
-
Burton, R.S.1
Barreto, F.S.2
-
28
-
-
10444251131
-
A normal approximation for the chi-square distribution
-
Canal L. 2005. A normal approximation for the chi-square distribution. Comput Stat Data Anal. 48:803-808.
-
(2005)
Comput Stat Data Anal.
, vol.48
, pp. 803-808
-
-
Canal, L.1
-
29
-
-
84863011613
-
Visualizing long-Term memory formation in two neurons of the Drosophila brain
-
Chen CC,Wu JK, Lin HW, Pai TP, Fu TF,Wu CL, Tully T, Chiang AS. 2012. Visualizing long-Term memory formation in two neurons of the Drosophila brain. Science 335:678-685.
-
(2012)
Science
, vol.335
, pp. 678-685
-
-
Chen, C.C.1
Wu, J.K.2
Lin, H.W.3
Pai, T.P.4
Fu, T.F.5
Wu, C.L.6
Tully, T.7
Chiang, A.S.8
-
30
-
-
1342288004
-
The Jalview Java alignment editor
-
DOI 10.1093/bioinformatics/btg430
-
Clamp M, Cuff J, Searle SM, Barton GJ. 2004. The Jalview Java alignment editor. Bioinformatics 20:426-427. (Pubitemid 38262778)
-
(2004)
Bioinformatics
, vol.20
, Issue.3
, pp. 426-427
-
-
Clamp, M.1
Cuff, J.2
Searle, S.M.3
Barton, G.J.4
-
31
-
-
0033870081
-
The Drosophila embargoed gene is required for larval progression and encodes the functional homolog of Schizosaccharomyces Crm1
-
Collier S, Chan HYE, Toda T,McKimmie C, Johnson G, Adler PN, O'Kane C, Ashburner M. 2000. The Drosophila embargoed gene is required for larval progression and encodes the functional homolog of Schizosaccharomyces Crm1. Genetics 155:1799-1807.
-
(2000)
Genetics
, vol.155
, pp. 1799-1807
-
-
Collier, S.1
Chan, H.Y.E.2
Toda, T.3
McKimmie, C.4
Johnson, G.5
Adler, P.N.6
O'Kane, C.7
Ashburner, M.8
-
33
-
-
25144496903
-
Gene expression patterns associated with queen honey bee longevity
-
DOI 10.1016/j.mad.2005.07.004, PII S0047637405001740
-
Corona M, Hughes KA,Weaver DB, Robinson GE. 2005. Gene expression patterns associated with queen honey bee longevity. Mech Ageing Dev. 126:1230-1238. (Pubitemid 41356525)
-
(2005)
Mechanisms of Ageing and Development
, vol.126
, Issue.11
, pp. 1230-1238
-
-
Corona, M.1
Hughes, K.A.2
Weaver, D.B.3
Robinson, G.E.4
-
34
-
-
34249850485
-
Vitellogenin, juvenile hormone, insulin signaling, and queen honey bee longevity
-
DOI 10.1073/pnas.0701909104
-
Corona M, Velarde RA, Remolina S, Moran-Lauter A, Wang Y, Hughes KA, Robinson GE. 2007. Vitellogenin, juvenile hormone, insulin signaling, and queen honey bee longevity. Proc Natl Acad Sci U S A. 104: 7128-7133. (Pubitemid 47186020)
-
(2007)
Proceedings of the National Academy of Sciences of the United States of America
, vol.104
, Issue.17
, pp. 7128-7133
-
-
Corona, M.1
Velarde, R.A.2
Remolina, S.3
Moran-Lauter, A.4
Wang, Y.5
Hughes, K.A.6
Robinson, G.E.7
-
35
-
-
0036709813
-
A neutral theory predicts multigenic aging and increased concentrations of deleterious mutations on the mitochondrial and Y chromosomes
-
DOI 10.1016/S0891-5849(02)00966-8, PII S0891584902009668
-
Cortopassi GA. 2002. A neutral theory predicts multigenic aging and increased concentrations of deleterious mutations on the mitochondrial and Y chromosomes. Free Radic Biol Med. 33:605-610. (Pubitemid 35245832)
-
(2002)
Free Radical Biology and Medicine
, vol.33
, Issue.5
, pp. 605-610
-
-
Cortopassi, G.A.1
-
36
-
-
67650831470
-
Genomewide RNAi screen identifies genes involved in intestinal pathogenic bacterial infection
-
Cronin SJ, Nehme NT, Limmer S, Liegeois S, Pospisilik JA, Schramek D, Leibbrandt A, Simoes Rde M, Gruber S, Puc U, et al. 2009. Genomewide RNAi screen identifies genes involved in intestinal pathogenic bacterial infection. Science 325:340-343.
-
(2009)
Science
, vol.325
, pp. 340-343
-
-
Cronin, S.J.1
Nehme, N.T.2
Limmer, S.3
Liegeois, S.4
Pospisilik, J.A.5
Schramek, D.6
Leibbrandt, A.7
Simoes Rde, M.8
Gruber, S.9
Puc, U.10
-
37
-
-
0027398565
-
The mitochondrial genome of the honeybee Apis mellifera: Complete sequence and genome organization
-
Crozier RH, Crozier YC. 1993. The mitochondrial genome of the honeybee Apis mellifera: Complete sequence and genome organization. Genetics 133:97-117. (Pubitemid 23011400)
-
(1993)
Genetics
, vol.133
, Issue.1
, pp. 97-117
-
-
Crozier, R.H.1
Crozier, Y.C.2
-
38
-
-
84855394783
-
Oxidative stress, mitochondrial dysfunction, and aging
-
Cui H, Kong Y, Zhang H. 2012. Oxidative stress, mitochondrial dysfunction, and aging. J Signal Transduct. 2012:646354.
-
(2012)
J Signal Transduct.
, vol.2012
, pp. 646354
-
-
Cui, H.1
Kong, Y.2
Zhang, H.3
-
39
-
-
40449109413
-
Transcriptional profiling of MnSOD-mediated lifespan extension in Drosophila reveals a species-general network of aging and metabolic genes
-
Curtis C, Landis GN, Folk D, Wehr NB, Hoe N, Waskar M, Abdueva D, Skvortsov D, Ford D, Luu A, et al. 2007. Transcriptional profiling of MnSOD-mediated lifespan extension in Drosophila reveals a species-general network of aging and metabolic genes. Genome Biol. 8:R262.
-
(2007)
Genome Biol.
, vol.8
-
-
Curtis, C.1
Landis, G.N.2
Folk, D.3
Wehr, N.B.4
Hoe, N.5
Waskar, M.6
Abdueva, D.7
Skvortsov, D.8
Ford, D.9
Luu, A.10
-
40
-
-
84879353196
-
Evidence for polygenic adaptation to pathogens in the human genome
-
Daub JT, Hofer T, Cutivet E, Dupanloup I, Quintana-Murci L, Robinson-Rechavi M, Excoffier L. 2013. Evidence for polygenic adaptation to pathogens in the human genome. Mol Biol Evol. 30:1544-1558.
-
(2013)
Mol Biol Evol.
, vol.30
, pp. 1544-1558
-
-
Daub, J.T.1
Hofer, T.2
Cutivet, E.3
Dupanloup, I.4
Quintana-Murci, L.5
Robinson-Rechavi, M.6
Excoffier, L.7
-
41
-
-
19344363466
-
Preferential duplication of conserved proteins in eukaryotic genomes
-
Davis JC, Petrov DA. 2004. Preferential duplication of conserved proteins in eukaryotic genomes. PLoS Biol. 2:e55.
-
(2004)
PLoS Biol.
, vol.2
-
-
Davis, J.C.1
Petrov, D.A.2
-
43
-
-
33747101309
-
Tequila, a neurotrypsin ortholog, regulates long-Term memory formation in Drosophila
-
DOI 10.1126/science.1127215
-
Didelot G, Molinari F, Tchenio P, Comas D, Milhiet E, Munnich A, Colleaux L, Preat T. 2006. Tequila, a neurotrypsin ortholog, regulates long-Term memory formation in Drosophila. Science 313:851-853. (Pubitemid 44223357)
-
(2006)
Science
, vol.313
, Issue.5788
, pp. 851-853
-
-
Didelot, G.1
Molinari, F.2
Tchenio, P.3
Comas, D.4
Milhiet, E.5
Munnich, A.6
Colleaux, L.7
Preat, T.8
-
44
-
-
47149117454
-
Evolution of genes and genomes on the Drosophila phylogeny
-
Drosophila 12 Genomes Consortium.
-
Drosophila 12 Genomes Consortium. 2007. Evolution of genes and genomes on the Drosophila phylogeny. Nature 450:203-218.
-
(2007)
Nature
, vol.450
, pp. 203-218
-
-
-
45
-
-
0035293755
-
Phenotypic data in FlyBase
-
Drysdale R. 2001. Phenotypic data in FlyBase. Brief Bioinform. 2:68-80.
-
(2001)
Brief Bioinform.
, vol.2
, pp. 68-80
-
-
Drysdale, R.1
-
46
-
-
84862245151
-
Neutral theory: The null hypothesis of molecular evolution
-
Duret L. 2008. Neutral theory: The null hypothesis of molecular evolution. Nat Educ. 1:218.
-
(2008)
Nat Educ.
, vol.1
, pp. 218
-
-
Duret, L.1
-
47
-
-
35348890683
-
On testing the significance of sets of genes
-
Efron B, Tibshirani R. 2007. On testing the significance of sets of genes. Ann Appl Stat. 1:107-129.
-
(2007)
Ann Appl Stat.
, vol.1
, pp. 107-129
-
-
Efron, B.1
Tibshirani, R.2
-
48
-
-
79952337544
-
Parasitoidism, not sociality, is associated with the evolution of elaborate mushroom bodies in the brains of hymenopteran insects
-
Farris SM, Schulmeister S. 2011. Parasitoidism, not sociality, is associated with the evolution of elaborate mushroom bodies in the brains of hymenopteran insects. Proc R Soc B Biol Sci. 278:940-951.
-
(2011)
Proc R Soc B Biol Sci.
, vol.278
, pp. 940-951
-
-
Farris, S.M.1
Schulmeister, S.2
-
49
-
-
84857439237
-
Comparison of pathway analysis approaches using lung cancer GWAS data sets
-
Fehringer G, Liu G, Briollais L, Brennan P, Amos CI, Spitz MR, Bickeboller H, Wichmann HE, Risch A, Hung RJ. 2012. Comparison of pathway analysis approaches using lung cancer GWAS data sets. PLoS One 7: E31816.
-
(2012)
PLoS One
, vol.7
-
-
Fehringer, G.1
Liu, G.2
Briollais, L.3
Brennan, P.4
Amos, C.I.5
Spitz, M.R.6
Bickeboller, H.7
Wichmann, H.E.8
Risch, A.9
Hung, R.J.10
-
50
-
-
0034626735
-
Oxidants, oxidative stress and the biology of ageing
-
Finkel T, Holbrook NJ. 2000. Oxidants, oxidative stress and the biology of ageing. Nature 408:239-247.
-
(2000)
Nature
, vol.408
, pp. 239-247
-
-
Finkel, T.1
Holbrook, N.J.2
-
52
-
-
77957233773
-
The effect of insertions, deletions, and alignment errors on the branch-site test of positive selection
-
Fletcher W, Yang Z. 2010. The effect of insertions, deletions, and alignment errors on the branch-site test of positive selection. Mol Biol Evol. 27:2257-2267.
-
(2010)
Mol Biol Evol.
, vol.27
, pp. 2257-2267
-
-
Fletcher, W.1
Yang, Z.2
-
53
-
-
0032893932
-
Preservation of duplicate genes by complementary, degenerative mutations
-
Force A, Lynch M, Pickett FB, Amores A, Yan YL, Postlethwait J. 1999. Preservation of duplicate genes by complementary, degenerative mutations. Genetics 151:1531-1545. (Pubitemid 29177561)
-
(1999)
Genetics
, vol.151
, Issue.4
, pp. 1531-1545
-
-
Force, A.1
Lynch, M.2
Pickett, F.B.3
Amores, A.4
Yan, Y.-L.5
Postlethwait, J.6
-
54
-
-
0031829758
-
Inferring pattern and process: Maximum-likelihood implementation of a nonhomogeneous model of DNA sequence evolution for phylogenetic analysis
-
Galtier N, Gouy M. 1998. Inferring pattern and process: Maximum-likelihood implementation of a nonhomogeneous model of DNA sequence evolution for phylogenetic analysis. Mol Biol Evol. 15: 871-879. (Pubitemid 28321885)
-
(1998)
Molecular Biology and Evolution
, vol.15
, Issue.7
, pp. 871-879
-
-
Galtier, N.1
Gouy, M.2
-
55
-
-
28744458859
-
Bioconductor: Open software development for computational biology and bioinformatics
-
Gentleman R, Carey V, Bates D, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, et al. 2004. Bioconductor: Open software development for computational biology and bioinformatics. Genome Biol. 5:R80.
-
(2004)
Genome Biol.
, vol.5
-
-
Gentleman, R.1
Carey, V.2
Bates, D.3
Bolstad, B.4
Dettling, M.5
Dudoit, S.6
Ellis, B.7
Gautier, L.8
Ge, Y.9
Gentry, J.10
-
56
-
-
80053543434
-
Trans genomic capture and sequencing of primate exomes reveals new targets of positive selection
-
George RD, McVicker G, Diederich R, Ng SB, MacKenzie AP, Swanson WJ, Shendure J, Thomas JH. 2011. Trans genomic capture and sequencing of primate exomes reveals new targets of positive selection. Genome Res. 21:1686-1694.
-
(2011)
Genome Res.
, vol.21
, pp. 1686-1694
-
-
George, R.D.1
McVicker, G.2
Diederich, R.3
Ng, S.B.4
MacKenzie, A.P.5
Swanson, W.J.6
Shendure, J.7
Thomas, J.H.8
-
57
-
-
0035542729
-
Does nonneutral evolution shape observed patterns of DNA variation in animal mitochondrial genomes?
-
Gerber AS, Loggins R, Kumar S, Dowling TE 2001. Does nonneutral evolution shape observed patterns of DNA variation in animal mitochondrial genomes? Annu Rev Genet. 35:539-566.
-
(2001)
Annu Rev Genet.
, vol.35
, pp. 539-566
-
-
Gerber, A.S.1
Loggins, R.2
Kumar, S.3
Dowling, T.E.4
-
58
-
-
84879338433
-
The branch-site test of positive selection is surprisingly robust but lacks power under synonymous substitution saturation and variation in GC
-
Gharib WH, Robinson-Rechavi M. 2013. The branch-site test of positive selection is surprisingly robust but lacks power under synonymous substitution saturation and variation in GC. Mol Biol Evol. 30: 1675-1686.
-
(2013)
Mol Biol Evol.
, vol.30
, pp. 1675-1686
-
-
Gharib, W.H.1
Robinson-Rechavi, M.2
-
59
-
-
77957341496
-
Mitochondrial genome evolution in fire ants (Hymenoptera: Formicidae)
-
Gotzek D, Clarke J, Shoemaker D. 2010. Mitochondrial genome evolution in fire ants (Hymenoptera: Formicidae). BMC Evol Biol. 10:300.
-
(2010)
BMC Evol Biol.
, vol.10
, pp. 300
-
-
Gotzek, D.1
Clarke, J.2
Shoemaker, D.3
-
61
-
-
0242578620
-
A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
-
DOI 10.1080/10635150390235520
-
Guindon S, Gascuel O. 2003. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol. 52: 696-704. (Pubitemid 37365050)
-
(2003)
Systematic Biology
, vol.52
, Issue.5
, pp. 696-704
-
-
Guindon, S.1
Gascuel, O.2
-
62
-
-
84863428615
-
The effects of kin selection on rates of molecular evolution in social insects
-
Hall DW, Goodisman MA. 2012. The effects of kin selection on rates of molecular evolution in social insects. Evolution 66:2080-2093.
-
(2012)
Evolution
, vol.66
, pp. 2080-2093
-
-
Hall, D.W.1
Goodisman, M.A.2
-
63
-
-
25444483561
-
Patterns of synonymous codon usage in Drosophila melanogaster genes with sex-biased expression
-
DOI 10.1534/genetics.104.038109
-
Hambuch TM, Parsch J. 2005. Patterns of synonymous codon usage in Drosophila melanogaster genes with sex-biased expression. Genetics 170:1691-1700. (Pubitemid 41362823)
-
(2005)
Genetics
, vol.170
, Issue.4
, pp. 1691-1700
-
-
Hambuch, T.M.1
Parsch, J.2
-
64
-
-
0015319592
-
The biologic clock the mitochondriä
-
Harman D. 1972. The biologic clock: The mitochondriä J AmGeriatr Soc. 20:145-147.
-
(1972)
J AmGeriatr Soc.
, vol.20
, pp. 145-147
-
-
Harman, D.1
-
65
-
-
84879030315
-
Accelerated evolution of innate immunity proteins in social insects: Adaptive evolution or relaxed constraint?
-
Harpur BA, Zayed A. 2013. Accelerated evolution of innate immunity proteins in social insects: Adaptive evolution or relaxed constraint? Mol Biol Evol. 30:1665-1674.
-
(2013)
Mol Biol Evol.
, vol.30
, pp. 1665-1674
-
-
Harpur, B.A.1
Zayed, A.2
-
66
-
-
28944441407
-
Higher duplicability of less important genes in yeast genomes
-
DOI 10.1093/molbev/msj015
-
He X, Zhang J. 2006. Higher duplicability of less important genes in yeast genomes. Mol Biol Evol. 23:144-151. (Pubitemid 41785961)
-
(2006)
Molecular Biology and Evolution
, vol.23
, Issue.1
, pp. 144-151
-
-
He, X.1
Zhang, J.2
-
67
-
-
84903746332
-
-
Cambridge (MA): Belknap Press of Harvard University Press. Honeybee Genome Sequencing Consortium. 2006. Insights into social insects from the genome of the honeybee Apis mellifera. Nature
-
Holldobler B, Wilson E. 1990. The ants. Cambridge (MA): Belknap Press of Harvard University Press. Honeybee Genome Sequencing Consortium. 2006. Insights into social insects from the genome of the honeybee Apis mellifera. Nature 443: 931-949.
-
(1990)
The ants
, vol.443
, pp. 931-949
-
-
Holldobler, B.1
Wilson, E.2
-
68
-
-
0031000922
-
Drosophila melanogaster NADPH-cytochrome P450 oxidoreductase: Pronounced expression in antennae may be related to odorant clearance
-
DOI 10.1016/S0378-1119(96)00851-7, PII S0378111996008517
-
Hovemann BT, Sehlmeyer F, Malz J. 1997. Drosophila melanogaster NADPH-cytochrome P450 oxidoreductase: Pronounced expression in antennaemay be related to odorant clearance. Gene 189:213-219. (Pubitemid 27187194)
-
(1997)
Gene
, vol.189
, Issue.2
, pp. 213-219
-
-
Hovemann, B.T.1
Sehlmeyer, F.2
Malz, J.3
-
69
-
-
80053169442
-
Relaxed selection is a precursor to the evolution of phenotypic plasticity
-
Hunt BG, Ometto L,WurmY, ShoemakerD, Yi SV, Keller L, Goodisman MAD. 2011. Relaxed selection is a precursor to the evolution of phenotypic plasticity. Proc Natl Acad Sci U S A. 108:15936-15941.
-
(2011)
Proc Natl Acad Sci U S A.
, vol.108
, pp. 15936-15941
-
-
Hunt, B.G.1
Ometto, L.2
Wurm, Y.3
Shoemaker, D.4
Yi, S.V.5
Keller, L.6
Goodisman, M.A.D.7
-
70
-
-
14844333272
-
Task-specific expression of the foraging gene in harvester ants
-
DOI 10.1111/j.1365-294X.2005.02450.x
-
Ingram KK, Oefner P, Gordon DM. 2005. Task-specific expression of the foraging gene in harvester ants. Mol Ecol. 14:813-818. (Pubitemid 40346472)
-
(2005)
Molecular Ecology
, vol.14
, Issue.3
, pp. 813-818
-
-
Ingram, K.K.1
Oefner, P.2
Gordon, D.M.3
-
71
-
-
33745592529
-
Long live the queen: Studying aging in social insects
-
DOI 10.1007/s11357-005-2916-z
-
Jemielity S, Chapuisat M, Parker JD, Keller L. 2005. Long live the queen: Studying aging in social insects. Age 27:241-248. (Pubitemid 43987331)
-
(2005)
Age
, vol.27
, Issue.3
, pp. 241-248
-
-
Jemielity, S.1
Chapuisat, M.2
Parker, J.D.3
Keller, L.4
-
72
-
-
0001558091
-
Energetic cost of running in workers of three ant species
-
Formica fusca L., Formica rufa L., and Camponotus herculeanus L. (Hymenoptera, Formicidae)
-
Jensen TF, Holm-Jensen I. 1980. Energetic cost of running in workers of three ant species, Formica fusca L., Formica rufa L., and Camponotus herculeanus L. (Hymenoptera, Formicidae). J Comp Physiol. 137: 151-156.
-
(1980)
J Comp Physiol.
, vol.137
, pp. 151-156
-
-
Jensen, T.F.1
Holm-Jensen, I.2
-
73
-
-
77952314728
-
An evolutionary genome scan for longevity-related natural selection in mammals
-
Jobson RW, Nabholz B, Galtier N 2010. An evolutionary genome scan for longevity-related natural selection in mammals.Mol Biol Evol. 27: 840-847.
-
(2010)
Mol Biol Evol.
, vol.27
, pp. 840-847
-
-
Jobson, R.W.1
Nabholz, B.2
Galtier, N.3
-
74
-
-
84858402388
-
The effects of alignment error and alignment filtering on the sitewise detection of positive selection
-
Jordan G, Goldman N. 2012. The effects of alignment error and alignment filtering on the sitewise detection of positive selection. Mol Biol Evol. 29:1125-1139.
-
(2012)
Mol Biol Evol.
, vol.29
, pp. 1125-1139
-
-
Jordan, G.1
Goldman, N.2
-
75
-
-
13744252890
-
MAFFT version 5: Improvement in accuracy of multiple sequence alignment
-
DOI 10.1093/nar/gki198
-
Katoh K, Kuma K, Toh H, Miyata T. 2005. MAFFT version 5: Improvement in accuracy of multiple sequence alignment. Nucleic Acids Res. 33:511-518. (Pubitemid 40360980)
-
(2005)
Nucleic Acids Research
, vol.33
, Issue.2
, pp. 511-518
-
-
Katoh, K.1
Kuma, K.-I.2
Toh, H.3
Miyata, T.4
-
76
-
-
0030688040
-
Extraordinary lifespans in ants: A test of evolutionary theories of ageing
-
DOI 10.1038/40130
-
Keller L, Genoud M. 1997. Extraordinary lifespans in ants: A test of evolutionary theories of ageing. Nature 389:958-960. (Pubitemid 27485684)
-
(1997)
Nature
, vol.389
, Issue.6654
, pp. 958-960
-
-
Keller, L.1
Genoud, M.2
-
77
-
-
33744986270
-
Social insects as a model to study the molecular basis of ageing
-
DOI 10.1016/j.exger.2006.04.002, PII S0531556506001057
-
Keller L, Jemielity S. 2006. Social insects as a model to study the molecular basis of ageing. Exp Gerontol. 41:553-556. (Pubitemid 43867229)
-
(2006)
Experimental Gerontology
, vol.41
, Issue.6
, pp. 553-556
-
-
Keller, L.1
Jemielity, S.2
-
78
-
-
77953360489
-
Gene expression profiling implicates OXPHOS complexes in lifespan extension of flies over-expressing a small mitochondrial chaperone, Hsp22
-
Kim HJ, Morrow G, Westwood JT, Michaud S, Tanguay RM. 2010. Gene expression profiling implicates OXPHOS complexes in lifespan extension of flies over-expressing a small mitochondrial chaperone, Hsp22. Exp Gerontol. 45:611-620.
-
(2010)
Exp Gerontol.
, vol.45
, pp. 611-620
-
-
Kim, H.J.1
Morrow, G.2
Westwood, J.T.3
Michaud, S.4
Tanguay, R.M.5
-
79
-
-
75549087151
-
BeetleBase in 2010: Revisions to provide comprehensive genomic information for Tribolium castaneum
-
Kim HS, Murphy T, Xia J, Caragea D, Park Y, Beeman RW, Lorenzen MD, Butcher S, Manak JR, Brown SJ. 2010. BeetleBase in 2010: Revisions to provide comprehensive genomic information for Tribolium castaneum. Nucleic Acids Res. 38:D437-D442.
-
(2010)
Nucleic Acids Res.
, vol.38
-
-
Kim, H.S.1
Murphy, T.2
Xia, J.3
Caragea, D.4
Park, Y.5
Beeman, R.W.6
Lorenzen, M.D.7
Butcher, S.8
Manak, J.R.9
Brown, S.J.10
-
80
-
-
25444502609
-
PAGE parametric analysis of gene set enrichment
-
Kim SY, Volsky DJ. 2005. PAGE: Parametric analysis of gene set enrichment. BMC Bioinformatics 6:144.
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 144
-
-
Kim, S.Y.1
Volsky, D.J.2
-
81
-
-
77955459130
-
Genome sequences of the human body louse and its primary endosymbiont provide insights into the permanent parasitic lifestyle
-
Kirkness EF, Haas BJ, Sun W, Braig HR, Perotti MA, Clark JM, Lee SH, Robertson HM, Kennedy RC, Elhaik E, et al. 2010. Genome sequences of the human body louse and its primary endosymbiont provide insights into the permanent parasitic lifestyle. Proc Natl Acad Sci U S A. 107:12168-12173.
-
(2010)
Proc Natl Acad Sci U S A.
, vol.107
, pp. 12168-12173
-
-
Kirkness, E.F.1
Haas, B.J.2
Sun, W.3
Braig, H.R.4
Perotti, M.A.5
Clark, J.M.6
Lee, S.H.7
Robertson, H.M.8
Kennedy, R.C.9
Elhaik, E.10
-
82
-
-
84857992426
-
Impaired fatty acid oxidation in a Drosophila model of mitochondrial trifunctional protein (MTP) deficiency
-
Kishita Y, Tsuda M, Aigaki T. 2012. Impaired fatty acid oxidation in a Drosophila model of mitochondrial trifunctional protein (MTP) deficiency. Biochem Biophys Res Commun. 419:344-349.
-
(2012)
Biochem Biophys Res Commun.
, vol.419
, pp. 344-349
-
-
Kishita, Y.1
Tsuda, M.2
Aigaki, T.3
-
83
-
-
77950244851
-
Genome-wide analysis reveals distinct substrate specificities of Rrp6, Dis3, and core exosome subunits
-
Kiss DL, Andrulis ED. 2010. Genome-wide analysis reveals distinct substrate specificities of Rrp6, Dis3, and core exosome subunits. RNA 16: 781-791.
-
(2010)
RNA
, vol.16
, pp. 781-791
-
-
Kiss, D.L.1
Andrulis, E.D.2
-
84
-
-
50849122974
-
Patterns of positive selection in six mammalian genomes
-
Kosiol C, Vinar T, da Fonseca RR, Hubisz MJ, Bustamante CD, Nielsen R, Siepel A. 2008. Patterns of positive selection in six mammalian genomes. PLoS Genet. 4:e1000144.
-
(2008)
PLoS Genet.
, vol.4
-
-
Kosiol, C.1
Vinar, T.2
Da Fonseca, R.R.3
Hubisz, M.J.4
Bustamante, C.D.5
Nielsen, R.6
Siepel, A.7
-
85
-
-
79959940178
-
Evolution of the mitochondrial fusionfission cycle and its role in aging
-
Kowald A, Kirkwood TB. 2011. Evolution of the mitochondrial fusionfission cycle and its role in aging. Proc Natl Acad Sci U S A. 108: 10237-10242.
-
(2011)
Proc Natl Acad Sci U S A.
, vol.108
, pp. 10237-10242
-
-
Kowald, A.1
Kirkwood, T.B.2
-
86
-
-
70350452120
-
Drosophila suppressor of sable protein [Su(s)] promotes degradation of aberrant and transposon-derived RNAs
-
Kuan YS, Brewer-Jensen P, Bai WL, Hunter C, Wilson CB, Bass S, Abernethy J, Wing JS, Searles LL. 2009. Drosophila suppressor of sable protein [Su(s)] promotes degradation of aberrant and transposon-derived RNAs. Mol Cell Biol. 29:5590-5603.
-
(2009)
Mol Cell Biol.
, vol.29
, pp. 5590-5603
-
-
Kuan, Y.S.1
Brewer-Jensen, P.2
Bai, W.L.3
Hunter, C.4
Wilson, C.B.5
Bass, S.6
Abernethy, J.7
Wing, J.S.8
Searles, L.L.9
-
87
-
-
79953027747
-
Stress and muscular dystrophy: A genetic screen for dystroglycan and dystrophin interactors in Drosophila identifies cellular stress response components
-
Kucherenko MM, Marrone AK, Rishko VM, Magliarelli Hde F, Shcherbata HR. 2011. Stress and muscular dystrophy: A genetic screen for dystroglycan and dystrophin interactors in Drosophila identifies cellular stress response components. Dev Biol. 352: 228-242.
-
(2011)
Dev Biol.
, vol.352
, pp. 228-242
-
-
Kucherenko, M.M.1
Marrone, A.K.2
Rishko, V.M.3
Magliarelli Hde, F.4
Shcherbata, H.R.5
-
88
-
-
84878548316
-
Comparative genomics of chemosensory protein genes reveals rapid evolution and positive selection in ant-specific duplicates
-
Kulmuni J, Wurm Y, Pamilo P. 2013. Comparative genomics of chemosensory protein genes reveals rapid evolution and positive selection in ant-specific duplicates. Heredity 110:538-547.
-
(2013)
Heredity
, vol.110
, pp. 538-547
-
-
Kulmuni, J.1
Wurm, Y.2
Pamilo, P.3
-
89
-
-
2442719045
-
Similar gene expression patterns characterize aging and oxidative stress in Drosophila melanogaster
-
DOI 10.1073/pnas.0307605101
-
Landis GN, Abdueva D, Skvortsov D, Yang J, Rabin BE, Carrick J, Tavare S, Tower J. 2004. Similar gene expression patterns characterize aging and oxidative stress in Drosophila melanogaster. Proc Natl Acad Sci U S A. 101:7663-7668. (Pubitemid 38658086)
-
(2004)
Proceedings of the National Academy of Sciences of the United States of America
, vol.101
, Issue.20
, pp. 7663-7668
-
-
Landis, G.N.1
Abdueva, D.2
Skvortsov, D.3
Yang, J.4
Rabin, B.E.5
Carrick, J.6
Tavare, S.7
Tower, J.8
-
90
-
-
58149182729
-
VectorBase: A data resource for invertebrate vector genomics
-
Lawson D, Arensburger P, Atkinson P, Besansky NJ, Bruggner RV, Butler R, Campbell KS, Christophides GK, Christley S, Dialynas E, et al. 2009. VectorBase: A data resource for invertebrate vector genomics. Nucleic Acids Res. 37:D583-D587.
-
(2009)
Nucleic Acids Res.
, vol.37
-
-
Lawson, D.1
Arensburger, P.2
Atkinson, P.3
Besansky, N.J.4
Bruggner, R.V.5
Butler, R.6
Campbell, K.S.7
Christophides, G.K.8
Christley, S.9
Dialynas, E.10
-
91
-
-
84872858771
-
The molecular basis of social behavior: Models, methods and advances
-
Leboeuf AC, Benton R, Keller L. 2013. The molecular basis of social behavior: Models, methods and advances. Curr Opin Neurobiol. 23: 3-10.
-
(2013)
Curr Opin Neurobiol.
, vol.23
, pp. 3-10
-
-
Leboeuf, A.C.1
Benton, R.2
Keller, L.3
-
92
-
-
57149133795
-
Incompatibility of nuclear and mitochondrial genomes causes hybrid sterility between two yeast species
-
Lee HY, Chou JY, Cheong L, Chang NH, Yang SY, Leu JY. 2008. Incompatibility of nuclear and mitochondrial genomes causes hybrid sterility between two yeast species. Cell 135:1065-1073.
-
(2008)
Cell
, vol.135
, pp. 1065-1073
-
-
Lee, H.Y.1
Chou, J.Y.2
Cheong, L.3
Chang, N.H.4
Yang, S.Y.5
Leu, J.Y.6
-
93
-
-
0032504657
-
Role of mitochondria in oxidative stress and ageing
-
DOI 10.1016/S0005-2728(98)00120-0, PII S0005272898001200
-
Lenaz G. 1998. Role of mitochondria in oxidative stress and ageing. Biochim Biophys Acta. 1366:53-67. (Pubitemid 28467022)
-
(1998)
Biochimica et Biophysica Acta-Bioenergetics
, vol.1366
, Issue.1-2
, pp. 53-67
-
-
Lenaz, G.1
-
94
-
-
84870941119
-
An exploration of the social brain hypothesis in insects
-
Lihoreau M, Latty T, Chittka L. 2012. An exploration of the social brain hypothesis in insects. Front Physiol. 3:442.
-
(2012)
Front Physiol.
, vol.3
, pp. 442
-
-
Lihoreau, M.1
Latty, T.2
Chittka, L.3
-
95
-
-
80054973803
-
A high-resolution map of human evolutionary constraint using 299 mammals
-
Lindblad-Toh K, Garber M, Zuk O, Lin MF, Parker BJ, Washietl S, Kheradpour P, Ernst J, Jordan G, Mauceli E, et al 2011. A high-resolution map of human evolutionary constraint using 299 mammals. Nature 478:476-482.
-
(2011)
Nature
, vol.478
, pp. 476-482
-
-
Lindblad-Toh, K.1
Garber, M.2
Zuk, O.3
Lin, M.F.4
Parker, B.J.5
Washietl, S.6
Kheradpour, P.7
Ernst, J.8
Jordan, G.9
Mauceli, E.10
-
96
-
-
67649447017
-
Genes with social effects are expected to harbor more sequence variation within and between species
-
Linksvayer TA,Wade MJ. 2009. Genes with social effects are expected to harbor more sequence variation within and between species. Evolution 63:1685-1696.
-
(2009)
Evolution
, vol.63
, pp. 1685-1696
-
-
Linksvayer, T.A.1
Wade, M.J.2
-
97
-
-
46249095233
-
Phylogeny-Aware gap placement prevents errors in sequence alignment and evolutionary analysis
-
DOI 10.1126/science.1158395
-
Loytynoja A, Goldman N. 2008. Phylogeny-Aware gap placement prevents errors in sequence alignment and evolutionary analysis. Science 320:1632-1635. (Pubitemid 351931252)
-
(2008)
Science
, vol.320
, Issue.5883
, pp. 1632-1635
-
-
Loytynoja, A.1
Goldman, N.2
-
98
-
-
84864006216
-
Accurate extension of multiple sequence alignments using a phylogeny-Aware graph algorithm
-
Loytynoja A, Vilella AJ, Goldman N. 2012. Accurate extension of multiple sequence alignments using a phylogeny-Aware graph algorithm. Bioinformatics 28:1684-1691.
-
(2012)
Bioinformatics
, vol.28
, pp. 1684-1691
-
-
Loytynoja, A.1
Vilella, A.J.2
Goldman, N.3
-
99
-
-
79957957884
-
High sensitivity to aligner and high rate of false positives in the estimates of positive selection in the 122 Drosophila genomes
-
Markova-Raina P, Petrov D 2011. High sensitivity to aligner and high rate of false positives in the estimates of positive selection in the 122 Drosophila genomes. Genome Res. 21:863-874.
-
(2011)
Genome Res.
, vol.21
, pp. 863-874
-
-
Markova-Raina, P.1
Petrov, D.2
-
101
-
-
34249062487
-
Positive and negative selection on the mitochondrial genome
-
Meiklejohn CD, Montooth KL, Rand DM. 2007. Positive and negative selection on the mitochondrial genome. Trends Genet. 23:259-263.
-
(2007)
Trends Genet.
, vol.23
, pp. 259-263
-
-
Meiklejohn, C.D.1
Montooth, K.L.2
Rand, D.M.3
-
102
-
-
0033571777
-
Overexpression of Mn-containing superoxide dismutase in transgenic Drosophila melanogaster
-
Mockett RJ, Orr WC, Rahmandar JJ, Benes JJ, Radyuk SN, Klichko VI, Sohal RS. 1999. Overexpression of Mn-containing superoxide dismutase in transgenic Drosophila melanogaster. Arch Biochem Biophys. 371:260-269.
-
(1999)
Arch Biochem Biophys.
, vol.371
, pp. 260-269
-
-
Mockett, R.J.1
Orr, W.C.2
Rahmandar, J.J.3
Benes, J.J.4
Radyuk, S.N.5
Klichko, V.I.6
Sohal, R.S.7
-
103
-
-
10744230972
-
Structural and functional diversity of lysyl oxidase and the LOX-like proteins
-
DOI 10.1016/S1570-9639(03)00053-0
-
Molnar J, Fong KSK, He QP, Hayashi K, Kim Y, Fong SFT, Fogelgren B, Molnarne Szauter K, Mink M, Csiszar K. 2003. Structural and functional diversity of lysyl oxidase and the LOX-like proteins. Biochim Biophys Acta. 1647:220-224. (Pubitemid 38234659)
-
(2003)
Biochimica et Biophysica Acta-Proteins and Proteomics
, vol.1647
, Issue.1-2
, pp. 220-224
-
-
Molnar, J.1
Fong, K.S.K.2
He, Q.P.3
Hayashi, K.4
Kim, Y.5
Fong, S.F.T.6
Fogelgren, B.7
Szauter, K.M.8
Mink, M.9
Csiszar, K.10
-
104
-
-
20744435140
-
Drosophila lysyl oxidases Dmloxl-1 and Dmloxl-2 are differentially expressed and the active DmLOXL-1 influences gene expression and development
-
DOI 10.1074/jbc.M503006200
-
Molnar J, Ujfaludi Z, Fong SF, Bollinger JA, Waro G, Fogelgren B, Dooley DM,MinkM, Csiszar K. 2005. Drosophila lysyl oxidases Dmloxl-1 and Dmloxl-2 are differentially expressed and the active DmLOXL-1 influences gene expression and development. J Biol Chem. 280: 22977-22985. (Pubitemid 40853207)
-
(2005)
Journal of Biological Chemistry
, vol.280
, Issue.24
, pp. 22977-22985
-
-
Molnar, J.1
Ujfaludi, Z.2
Fong, S.F.T.3
Bollinger, J.A.4
Waro, G.5
Fogelgren, B.6
Dooley, D.M.7
Mink, M.8
Csiszar, K.9
-
105
-
-
50249117097
-
The spectrum of mitochondrial mutation differs across species
-
Montooth KL, Rand DM. 2008. The spectrum of mitochondrial mutation differs across species. PLoS Biol. 6:e213.
-
(2008)
PLoS Biol.
, vol.6
-
-
Montooth, K.L.1
Rand, D.M.2
-
106
-
-
80052754502
-
Patterns of positive selection and neutral evolution in the protein-coding genes of Tetraodon and Takifugu
-
Montoya-Burgos JI. 2011. Patterns of positive selection and neutral evolution in the protein-coding genes of Tetraodon and Takifugu. PLoS One 6:e24800.
-
(2011)
PLoS One
, vol.6
-
-
Montoya-Burgos, J.I.1
-
107
-
-
33645665925
-
Phylogeny of the ants: Diversification in the age of angiosperms
-
Moreau CS, BellCD, Vila R, Archibald SB, PierceNE. 2006. Phylogeny of the ants: Diversification in the age of angiosperms. Science 312:101-104.
-
(2006)
Science
, vol.312
, pp. 101-104
-
-
Moreau, C.S.1
Bell, C.D.2
Vila, R.3
Archibald, S.B.4
Pierce, N.E.5
-
108
-
-
84891785243
-
Selectome update: Quality control and computational improvements to a database of positive selection
-
Moretti S, Laurenczy B, Gharib WH, Castella B, Kuzniar A, Schabauer H, Studer RA, Valle M, Salamin N, Stockinger H, et al. 2014. Selectome update: Quality control and computational improvements to a database of positive selection. Nucleic Acids Res. 42:D917-D921.
-
(2014)
Nucleic Acids Res.
, vol.42
-
-
Moretti, S.1
Laurenczy, B.2
Gharib, W.H.3
Castella, B.4
Kuzniar, A.5
Schabauer, H.6
Studer, R.A.7
Valle, M.8
Salamin, N.9
Stockinger, H.10
-
109
-
-
43949136460
-
Ageing in a eusocial insect: Molecular and physiological characteristics of life span plasticity in the honey bee
-
DOI 10.1111/j.1365-2435.2008.01419.x
-
Munch D, Amdam GV, Wolschin F. 2008. Ageing in a eusocial insect: Molecular and physiological characteristics of life span plasticity in the honey bee. Funct Ecol. 22:407-421. (Pubitemid 351703931)
-
(2008)
Functional Ecology
, vol.22
, Issue.3
, pp. 407-421
-
-
Munch, D.1
Amdam, G.V.2
Wolschin, F.3
-
110
-
-
78651276632
-
Hymenoptera Genome Database: Integrated community resources for insect species of the order Hymenoptera
-
Munoz-Torres MC, Reese JT, Childers CP, Bennett AK, Sundaram JP, Childs KL, Anzola JM, Milshina N, Elsik CG. 2011. Hymenoptera Genome Database: Integrated community resources for insect species of the order Hymenoptera. Nucleic Acids Res. 39:D658-D662.
-
(2011)
Nucleic Acids Res.
, vol.39
-
-
Munoz-Torres, M.C.1
Reese, J.T.2
Childers, C.P.3
Bennett, A.K.4
Sundaram, J.P.5
Childs, K.L.6
Anzola, J.M.7
Milshina, N.8
Elsik, C.G.9
-
111
-
-
79955682293
-
Genome-wide analysis of self-renewal in Drosophila neural stem cells by transgenic RNAi
-
Neumuller RA, Richter C, Fischer A, Novatchkova M, Neumuller KG, Knoblich JA. 2011. Genome-wide analysis of self-renewal in Drosophila neural stem cells by transgenic RNAi. Cell Stem Cell 8: 580-593.
-
(2011)
Cell Stem Cell
, vol.8
, pp. 580-593
-
-
Neumuller, R.A.1
Richter, C.2
Fischer, A.3
Novatchkova, M.4
Neumuller, K.G.5
Knoblich, J.A.6
-
112
-
-
25444497780
-
Do insect metabolic rates at rest and during flight scale with body mass?
-
Niven JE, Scharlemann JP 2005. Do insect metabolic rates at rest and during flight scale with body mass? Biol Lett. 1:346-349.
-
(2005)
Biol Lett.
, vol.1
, pp. 346-349
-
-
Niven, J.E.1
Scharlemann, J.P.2
-
113
-
-
0034623005
-
T-coffee: A novel method for fast and accurate multiple sequence alignment
-
Notredame C, Higgins DG, Heringa J. 2000. T-coffee: A novel method for fast and accurate multiple sequence alignment. J Mol Biol. 302: 205-217.
-
(2000)
J Mol Biol.
, vol.302
, pp. 205-217
-
-
Notredame, C.1
Higgins, D.G.2
Heringa, J.3
-
115
-
-
80051559742
-
The genome of the leaf-cutting ant Acromyrmex echinatior suggests key adaptations to advanced social life and fungus farming
-
Nygaard S, Zhang G, Schiøtt M, Li C, Wurm Y, Hu H, Zhou J, Ji L, Qiu F, Rasmussen M, et al. 2011. The genome of the leaf-cutting ant Acromyrmex echinatior suggests key adaptations to advanced social life and fungus farming. Genome Res. 21:1339-1348.
-
(2011)
Genome Res.
, vol.21
, pp. 1339-1348
-
-
Nygaard, S.1
Zhang, G.2
Schiøtt, M.3
Li, C.4
Wurm, Y.5
Hu, H.6
Zhou, J.7
Ji, L.8
Qiu, F.9
Rasmussen, M.10
-
116
-
-
52449104857
-
Rapidly evolving mitochondrial genome and directional selection in mitochondrial genes in the parasitic wasp nasonia (hymenoptera: Pteromalidae)
-
Oliveira DC, Raychoudhury R, Lavrov DV, Werren JH 2008. Rapidly evolving mitochondrial genome and directional selection in mitochondrial genes in the parasitic wasp nasonia (hymenoptera: Pteromalidae). Mol Biol Evol. 25:2167-2180.
-
(2008)
Mol Biol Evol.
, vol.25
, pp. 2167-2180
-
-
Oliveira, D.C.1
Raychoudhury, R.2
Lavrov, D.V.3
Werren, J.H.4
-
117
-
-
79952201506
-
Whole-genome positive selection and habitat-driven evolution in a shallow and a deep-sea urchin
-
Oliver TA, Garfield DA, Manier MK, Haygood R, Wray GA, Palumbi SR. 2010. Whole-genome positive selection and habitat-driven evolution in a shallow and a deep-sea urchin. Genome Biol Evol. 2: 800-814.
-
(2010)
Genome Biol Evol.
, vol.2
, pp. 800-814
-
-
Oliver, T.A.1
Garfield, D.A.2
Manier, M.K.3
Haygood, R.4
Wray, G.A.5
Palumbi, S.R.6
-
118
-
-
79952822299
-
Evolution of gene expression in fire ants: The effects of developmental stage, caste, and species
-
Ometto L, Shoemaker D, Ross KG, Keller L. 2011. Evolution of gene expression in fire ants: The effects of developmental stage, caste, and species. Mol Biol Evol. 28:1381-1392.
-
(2011)
Mol Biol Evol.
, vol.28
, pp. 1381-1392
-
-
Ometto, L.1
Shoemaker, D.2
Ross, K.G.3
Keller, L.4
-
119
-
-
84901327849
-
The Drosophila phenotype ontology
-
Osumi-Sutherland D, Marygold S, Millburn G, McQuilton P, Ponting L, Stefancsik R, Falls K, Brown N, Gkoutos G. 2013. The Drosophila phenotype ontology. J Biomed Semantics. 4:30.
-
(2013)
J Biomed Semantics.
, vol.4
, pp. 30
-
-
Osumi-Sutherland, D.1
Marygold, S.2
Millburn, G.3
McQuilton, P.4
Ponting, L.5
Stefancsik, R.6
Falls, K.7
Brown, N.8
Gkoutos, G.9
-
120
-
-
1542408999
-
Decreased expression of Cu-Zn superoxide dismutase 1 in ants with extreme lifespan
-
DOI 10.1073/pnas.0400222101
-
Parker JD, Parker KM, Sohal BH, Sohal RS, Keller L. 2004. Decreased expression of Cu-Zn superoxide dismutase 1 in ants with extreme lifespan. Proc Natl Acad Sci U S A. 101:3486-3489. (Pubitemid 38338221)
-
(2004)
Proceedings of the National Academy of Sciences of the United States of America
, vol.101
, Issue.10
, pp. 3486-3489
-
-
Parker, J.D.1
Parker, K.M.2
Sohal, B.H.3
Sohal, R.S.4
Keller, L.5
-
121
-
-
84870242118
-
Juvenile hormone induces queen development in late-stage larvae of the ant Harpegnathos saltator
-
Penick CA, Prager SS, Liebig J. 2012. Juvenile hormone induces queen development in late-stage larvae of the ant Harpegnathos saltator. J Insect Physiol. 58:1643-1649.
-
(2012)
J Insect Physiol.
, vol.58
, pp. 1643-1649
-
-
Penick, C.A.1
Prager, S.S.2
Liebig, J.3
-
122
-
-
77954288890
-
An alignment confidence score capturing robustness to guide tree uncertainty
-
Penn O, Privman E, Landan G, Graur D, Pupko T. 2010. An alignment confidence score capturing robustness to guide tree uncertainty. Mol Biol Evol. 27:1759-1767.
-
(2010)
Mol Biol Evol.
, vol.27
, pp. 1759-1767
-
-
Penn, O.1
Privman, E.2
Landan, G.3
Graur, D.4
Pupko, T.5
-
123
-
-
1542563727
-
The rate of free radical production as a determinant of the rate of aging: Evidence from the comparative approach
-
DOI 10.1007/s003600050131
-
Perez-Campo R, Lopez-Torres M, Cadenas S, Rojas C, Barja G. 1998. The rate of free radical production as a determinant of the rate of aging: Evidence from the comparative approach. J Comp Physiol B Biochem Syst Environ Physiol. 168:149-158. (Pubitemid 28202995)
-
(1998)
Journal of Comparative Physiology-B Biochemical, Systemic, and Environmental Physiology
, vol.168
, Issue.3
, pp. 149-158
-
-
Perez-Campo, R.1
Lopez-Torres, M.2
Cadenas, S.3
Rojas, C.4
Barja, G.5
-
124
-
-
84858383488
-
Improving the performance of positive selection inference by filtering unreliable alignment regions
-
Privman E, Penn O, Pupko T. 2012. Improving the performance of positive selection inference by filtering unreliable alignment regions. Mol Biol Evol. 29:1-5.
-
(2012)
Mol Biol Evol.
, vol.29
, pp. 1-5
-
-
Privman, E.1
Penn, O.2
Pupko, T.3
-
126
-
-
6344225311
-
Megator, an essential coiled-coil protein that localizes to the putative spindle matrix during mitosis in Drosophila
-
DOI 10.1091/mbc.E04-07-0579
-
Qi H, Rath U, Wang D, Xu YZ, Ding Y, Zhang W, Blacketer MJ, Paddy MR, Girton J, Johansen J, et al. 2004. Megator, an essential coiled-coil protein that localizes to the putative spindle matrix during mitosis in Drosophila. Mol Biol Cell. 15:4854-4865. (Pubitemid 39392202)
-
(2004)
Molecular Biology of the Cell
, vol.15
, Issue.11
, pp. 4854-4865
-
-
Qi, H.1
Rath, U.2
Wang, D.3
Xu, Y.-Z.4
Ding, Y.5
Zhang, W.6
Blacketer, M.J.7
Paddy, M.R.8
Girton, J.9
Johansen, J.10
Johansen, K.M.11
-
127
-
-
84855515046
-
Ancestral developmental potential facilitates parallel evolution in ants
-
Rajakumar R, San Mauro D, Dijkstra MB, Huang MH,Wheeler DE, Hiou-Tim F, Khila A, Cournoyea M, Abouheif E. 2012. Ancestral developmental potential facilitates parallel evolution in ants. Science 335: 79-82.
-
(2012)
Science
, vol.335
, pp. 79-82
-
-
Rajakumar, R.1
San Mauro, D.2
Dijkstra, M.B.3
Huang, M.H.4
Wheeler, D.E.5
Hiou-Tim, F.6
Khila, A.7
Cournoyea, M.8
Abouheif, E.9
-
128
-
-
84868134353
-
Genomic basis of aging and life-history evolution in Drosophila melanogaster
-
Remolina SC, Chang PL, Leips J, Nuzhdin SV, Hughes KA. 2012. Genomic basis of aging and life-history evolution in Drosophila melanogaster. Evolution 66:3390-3403.
-
(2012)
Evolution
, vol.66
, pp. 3390-3403
-
-
Remolina, S.C.1
Chang, P.L.2
Leips, J.3
Nuzhdin, S.V.4
Hughes, K.A.5
-
129
-
-
0038015611
-
Evolutionary diversification of mitochondrial proteomes: Implications for human disease
-
DOI 10.1016/S0168-9525(03)00137-9
-
Richly E, Chinnery PF, Leister D. 2003. Evolutionary diversification of mitochondrial proteomes: Implications for human disease. Trends Genet. 19:356-362. (Pubitemid 36794534)
-
(2003)
Trends in Genetics
, vol.19
, Issue.7
, pp. 356-362
-
-
Richly, E.1
Chinnery, P.F.2
Leister, D.3
-
130
-
-
33750500530
-
The chemoreceptor superfamily in the honey bee, Apis mellifera: Expansion of the odorant, but not gustatory, receptor family
-
DOI 10.1101/gr.5057506
-
Robertson HM, Wanner KW. 2006. The chemoreceptor superfamily in the honey bee, Apis mellifera: Expansion of the odorant, but not gustatory, receptor family. Genome Res. 16:1395-1403. (Pubitemid 44664682)
-
(2006)
Genome Research
, vol.16
, Issue.11
, pp. 1395-1403
-
-
Robertson, H.M.1
Wanner, K.W.2
-
131
-
-
0344736809
-
The Drosophila nucleoporin DNup88 localizes DNup214 and CRM11 on the nuclear envelope and attenuates NES-mediated nuclear export
-
Roth P, Xylourgidis N, Sabri N, Uv A, Fornerod M, Samakovlis C 2003. The Drosophila nucleoporin DNup88 localizes DNup214 and CRM11 on the nuclear envelope and attenuates NES-mediated nuclear export. J Cell Biol. 163:701-706.
-
(2003)
J Cell Biol.
, vol.163
, pp. 701-706
-
-
Roth, P.1
Xylourgidis, N.2
Sabri, N.3
Uv, A.4
Fornerod, M.5
Samakovlis, C.6
-
132
-
-
84867416874
-
SlimCodeML: An optimized version of CodeML for the branch-site model 2012
-
Schabauer H, Valle M, Pacher C, Stockinger H, Stamatakis A, Robinson-Rechavi M, Yang Z, Salamin N. 2012. SlimCodeML: An optimized version of CodeML for the branch-site model. 2012 IEEE 26th International Parallel and Distributed Processing Symposium Workshops & PhD Forum. Shanghai. p. 706-714.
-
(2012)
IEEE 26th International Parallel and Distributed Processing Symposium Workshops & PhD Forum Shanghai.
, pp. 706-714
-
-
Schabauer, H.1
Valle, M.2
Pacher, C.3
Stockinger, H.4
Stamatakis, A.5
Robinson-Rechavi, M.6
Yang, Z.7
Salamin, N.8
-
133
-
-
72149107901
-
Estimates of positive Darwinian selection are inflated by errors in sequencing, annotation, and alignment
-
Schneider A, Souvorov A, Sabath N, Landan G, Gonnet GH, Graur D. 2009. Estimates of positive Darwinian selection are inflated by errors in sequencing, annotation, and alignment. Genome Biol Evol. 1: 114-118.
-
(2009)
Genome Biol Evol.
, vol.1
, pp. 114-118
-
-
Schneider, A.1
Souvorov, A.2
Sabath, N.3
Landan, G.4
Gonnet, G.H.5
Graur, D.6
-
134
-
-
77950628524
-
Nature versus nurture in social insect caste differentiation
-
Schwander T, Lo N, Beekman M, Oldroyd BP, Keller L. 2010. Nature versus nurture in social insect caste differentiation. Trends Ecol Evol. 25:275-282.
-
(2010)
Trends Ecol Evol.
, vol.25
, pp. 275-282
-
-
Schwander, T.1
Lo, N.2
Beekman, M.3
Oldroyd, B.P.4
Keller, L.5
-
135
-
-
77952698523
-
Adaptive evolution of energy metabolism genes and the origin of flight in bats
-
Shen YY, Liang L, Zhu ZH, Zhou WP, Irwin DM, Zhang YP. 2010. Adaptive evolution of energy metabolism genes and the origin of flight in bats. Proc Natl Acad Sci U S A. 107:8666-8671.
-
(2010)
Proc Natl Acad Sci U S A.
, vol.107
, pp. 8666-8671
-
-
Shen, Y.Y.1
Liang, L.2
Zhu, Z.H.3
Zhou, W.P.4
Irwin, D.M.5
Zhang, Y.P.6
-
136
-
-
84881151042
-
Social insect genomes exhibit dramatic evolution in gene composition and regulation while preserving regulatory features linked to sociality
-
Simola DF,Wissler L, Donahue G, Waterhouse RM, Helmkampf M, Roux J, Nygaard S, Glastad KM, Hagen DE, Viljakainen L, et al. 2013. Social insect genomes exhibit dramatic evolution in gene composition and regulation while preserving regulatory features linked to sociality. Genome Res. 23:1235-1247.
-
(2013)
Genome Res.
, vol.23
, pp. 1235-1247
-
-
Simola, D.F.1
Wissler, L.2
Donahue, G.3
Waterhouse, R.M.4
Helmkampf, M.5
Roux, J.6
Nygaard, S.7
Glastad, K.M.8
Hagen, D.E.9
Viljakainen, L.10
-
137
-
-
35948989284
-
The obo foundry: Coordinated evolution of ontologies to support biomedical data integration
-
DOI 10.1038/nbt1346, PII NBT1346
-
Smith B, Ashburner M, Rosse C, Bard J, Bug W, Ceusters W, Goldberg LJ, Eilbeck K, Ireland A, Mungall CJ, et al. 2007. The OBO Foundry: Coordinated evolution of ontologies to support biomedical data integration. Nat Biotechnol. 25:1251-1255. (Pubitemid 350076511)
-
(2007)
Nature Biotechnology
, vol.25
, Issue.11
, pp. 1251-1255
-
-
Smith, B.1
Ashburner, M.2
Rosse, C.3
Bard, J.4
Bug, W.5
Ceusters, W.6
Goldberg, L.J.7
Eilbeck, K.8
Ireland, A.9
Mungall, C.J.10
Leontis, N.11
Rocca-Serra, P.12
Ruttenberg, A.13
Sansone, S.-A.14
Scheuermann, R.H.15
Shah, N.16
Whetzel, P.L.17
Lewis, S.18
-
138
-
-
79954986915
-
Draft genome of the globally widespread and invasive Argentine ant (Linepithema humile)
-
Smith CD, Zimin A, Holt C, Abouheif E, Benton R, Cash E, Croset V, Currie CR, Elhaik E, Elsik CG, et al. 2011. Draft genome of the globally widespread and invasive Argentine ant (Linepithema humile). Proc Natl Acad Sci U S A. 108:5673-5678.
-
(2011)
Proc Natl Acad Sci U S A.
, vol.108
, pp. 5673-5678
-
-
Smith, C.D.1
Zimin, A.2
Holt, C.3
Abouheif, E.4
Benton, R.5
Cash, E.6
Croset, V.7
Currie, C.R.8
Elhaik, E.9
Elsik, C.G.10
-
139
-
-
79955002712
-
Draft genome of the red harvester ant Pogonomyrmex barbatus
-
Smith CR, Smith CD, Robertson HM, Helmkampf M, Zimin A, Yandell M, Holt C, Hu H, Abouheif E, Benton R, et al. 2011. Draft genome of the red harvester ant Pogonomyrmex barbatus. Proc Natl Acad Sci U S A. 108:5667-5672.
-
(2011)
Proc Natl Acad Sci U S A.
, vol.108
, pp. 5667-5672
-
-
Smith, C.R.1
Smith, C.D.2
Robertson, H.M.3
Helmkampf, M.4
Zimin, A.5
Yandell, M.6
Holt, C.7
Hu, H.8
Abouheif, E.9
Benton, R.10
-
140
-
-
52149099478
-
Genetic and genomic analyses of the division of labour in insect societies
-
Smith CR, Toth AL, Suarez AV, Robinson GE. 2008. Genetic and genomic analyses of the division of labour in insect societies. Nat Rev Genet. 9: 735-748.
-
(2008)
Nat Rev Genet.
, vol.9
, pp. 735-748
-
-
Smith, C.R.1
Toth, A.L.2
Suarez, A.V.3
Robinson, G.E.4
-
141
-
-
33750403801
-
RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
-
DOI 10.1093/bioinformatics/btl446
-
Stamatakis A. 2006. RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22:2688-2690. (Pubitemid 44642609)
-
(2006)
Bioinformatics
, vol.22
, Issue.21
, pp. 2688-2690
-
-
Stamatakis, A.1
-
143
-
-
50649104620
-
Pervasive positive selection on duplicated and nonduplicated vertebrate protein coding genes
-
Studer RA, Penel S, Duret L, Robinson-Rechavi M. 2008. Pervasive positive selection on duplicated and nonduplicated vertebrate protein coding genes. Genome Res. 18:1393-1402.
-
(2008)
Genome Res.
, vol.18
, pp. 1393-1402
-
-
Studer, R.A.1
Penel, S.2
Duret, L.3
Robinson-Rechavi, M.4
-
144
-
-
0034494266
-
Energy metabolism during insect flight: Biochemical design and physiological performance
-
DOI 10.1086/318112
-
Suarez RK. 2000. Energy metabolism during insect flight: Biochemical design and physiological performance. Physiol Biochem Zool. 73: 765-771. (Pubitemid 32116930)
-
(2000)
Physiological and Biochemical Zoology
, vol.73
, Issue.6
, pp. 765-771
-
-
Suarez, R.K.1
-
145
-
-
27344435774
-
Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles
-
DOI 10.1073/pnas.0506580102
-
Subramanian A, Tamayo P, Mootha VK, Mukherjee S, Ebert BL, Gillette MA, Paulovich A, Pomeroy SL, Golub TR, Lander ES, et al. 2005. Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles. Proc Natl Acad Sci U S A. 102: 15545-15550. (Pubitemid 41528093)
-
(2005)
Proceedings of the National Academy of Sciences of the United States of America
, vol.102
, Issue.43
, pp. 15545-15550
-
-
Subramanian, A.1
Tamayo, P.2
Mootha, V.K.3
Mukherjee, S.4
Ebert, B.L.5
Gillette, M.A.6
Paulovich, A.7
Pomeroy, S.L.8
Golub, T.R.9
Lander, E.S.10
Mesirov, J.P.11
-
146
-
-
79952270451
-
The genome sequence of the leaf-cutter ant Atta cephalotes reveals insights into its obligate symbiotic lifestyle
-
Suen G, Teiling C, Li L, Holt C, Abouheif E, Bornberg-Bauer E, Bouffard P, Caldera EJ, Cash E, Cavanaugh A, et al. 2011. The genome sequence of the leaf-cutter ant Atta cephalotes reveals insights into its obligate symbiotic lifestyle. PLoS Genet. 7:e1002007.
-
(2011)
PLoS Genet.
, vol.7
-
-
Suen, G.1
Teiling, C.2
Li, L.3
Holt, C.4
Abouheif, E.5
Bornberg-Bauer, E.6
Bouffard, P.7
Caldera, E.J.8
Cash, E.9
Cavanaugh, A.10
-
147
-
-
0037230001
-
Pervasive adaptive evolution in mammalian fertilization proteins
-
Swanson WJ, Nielsen R, Yang Q. 2003. Pervasive adaptive evolution in mammalian fertilization proteins. Mol Biol Evol. 20:18-20. (Pubitemid 36077894)
-
(2003)
Molecular Biology and Evolution
, vol.20
, Issue.1
, pp. 18-20
-
-
Swanson, W.J.1
Nielsen, R.2
Yang, Q.3
-
148
-
-
34547489084
-
Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments
-
DOI 10.1080/10635150701472164, PII 780704285
-
Talavera G, Castresana J. 2007. Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments. Syst Biol. 56:564-577. (Pubitemid 47171631)
-
(2007)
Systematic Biology
, vol.56
, Issue.4
, pp. 564-577
-
-
Talavera, G.1
Castresana, J.2
-
149
-
-
80051653324
-
The complete mitochondrial genome of the Asiatic cavity-nesting honeybee Apis cerana (Hymenoptera: Apidae)
-
Tan H-W, Liu G-H, Dong X, Lin R-Q, Song H-Q, Huang S-Y, Yuan Z-G, Zhao G-H, Zhu X-Q. 2011. The complete mitochondrial genome of the Asiatic cavity-nesting honeybee Apis cerana (Hymenoptera: Apidae). PLoS One 6:e23008.
-
(2011)
PLoS One
, vol.6
-
-
Tan, H.-W.1
Liu, G.-H.2
Dong, X.3
Lin, R.-Q.4
Song, H.-Q.5
Huang, S.-Y.6
Yuan, Z.-G.7
Zhao, G.-H.8
Zhu, X.-Q.9
-
151
-
-
71249124573
-
Comparing gene set analysis methods on single-nucleotide polymorphism data from genetic analysis workshop 16
-
Tintle N, Borchers B, Brown M, Bekmetjev A. 2009. Comparing gene set analysis methods on single-nucleotide polymorphism data from Genetic Analysis Workshop 16. BMC Proc. 3:S96.
-
(2009)
BMC Proc.
, vol.3
-
-
Tintle, N.1
Borchers, B.2
Brown, M.3
Bekmetjev, A.4
-
152
-
-
41949090434
-
The genome of the model beetle and pest Tribolium castaneum
-
Tribolium Genome Sequencing Consortium.
-
Tribolium Genome Sequencing Consortium. 2008. The genome of the model beetle and pest Tribolium castaneum. Nature 452:949-955.
-
(2008)
Nature
, vol.452
, pp. 949-955
-
-
-
153
-
-
29144458899
-
Somatic mtDNA mutations cause aging phenotypes without affecting reactive oxygen species production
-
DOI 10.1073/pnas.0508886102
-
Trifunovic A, Hansson A, Wredenberg A, Rovio AT, Dufour E, Khvorostov I, Spelbrink JN, Wibom R, Jacobs HT, Larsson NG. 2005. Somatic mtDNA mutations cause aging phenotypes without affecting reactive oxygen species production. Proc Natl Acad Sci U S A. 102:17993-17998. (Pubitemid 41798490)
-
(2005)
Proceedings of the National Academy of Sciences of the United States of America
, vol.102
, Issue.50
, pp. 17993-17998
-
-
Trifunovic, A.1
Hansson, A.2
Wredenberg, A.3
Rovio, A.T.4
Dufour, E.5
Khvorostov, I.6
Spelbrink, J.N.7
Wibom, R.8
Jacobs, H.T.9
Larsson, N.-G.10
-
154
-
-
2642580016
-
Premature ageing in mice expressing defective mitochondrial DNA polymerase
-
DOI 10.1038/nature02517
-
Trifunovic A, Wredenberg A, Falkenberg M, Spelbrink JN, Rovio AT, Bruder CE, Bohlooly-Y M, Gidlof S, Oldfors A, Wibom R, et al. 2004. Premature ageing in mice expressing defective mitochondrial DNA polymerase. Nature 429:417-423. (Pubitemid 38715133)
-
(2004)
Nature
, vol.429
, Issue.6990
, pp. 417-423
-
-
Trifunovic, A.1
Wredenberg, A.2
Falkenberg, M.3
Spelbrink, J.N.4
Rovio, A.T.5
Bruder, C.E.6
Bohlooly-Y, M.7
Gldlof, S.8
Oldfors, A.9
Wibom, R.10
Tornell, J.11
Jacobs, H.T.12
Larsson, N.-G.13
-
155
-
-
58149199579
-
FlyBase: Enhancing Drosophila Gene Ontology annotations
-
Tweedie S, Ashburner M, Falls K, Leyland P, McQuilton P, Marygold S, Millburn G, Osumi-Sutherland D, Schroeder A, Seal R, et al. 2009. FlyBase: Enhancing Drosophila Gene Ontology annotations. Nucleic Acids Res. 37:D555-D559.
-
(2009)
Nucleic Acids Res.
, vol.37
-
-
Tweedie, S.1
Ashburner, M.2
Falls, K.3
Leyland, P.4
McQuilton, P.5
Marygold, S.6
Millburn, G.7
Osumi-Sutherland, D.8
Schroeder, A.9
Seal, R.10
-
156
-
-
55149097875
-
The role of positive selection in determining the molecular cause of species differences in disease
-
Vamathevan J, Hasan S, Emes R, Amrine-Madsen H, Rajagopalan D, Topp SD, Kumar V, Word M, Simmons MD, Foord SM, et al. 2008. The role of positive selection in determining the molecular cause of species differences in disease. BMC Evol Biol. 8:273.
-
(2008)
BMC Evol Biol.
, vol.8
, pp. 273
-
-
Vamathevan, J.1
Hasan, S.2
Emes, R.3
Amrine-Madsen, H.4
Rajagopalan, D.5
Topp, S.D.6
Kumar, V.7
Word, M.8
Simmons, M.D.9
Foord, S.M.10
-
157
-
-
59949096873
-
Ensembl compara genetrees: Complete, duplication-Aware phylogenetic trees in vertebrates
-
Vilella AJ, Severin J, Ureta-Vidal A, Heng L, Durbin R, Birney E. 2009. EnsemblCompara GeneTrees: Complete, duplication-Aware phylogenetic trees in vertebrates. Genome Res. 19:327-335.
-
(2009)
Genome Res.
, vol.19
, pp. 327-335
-
-
Vilella, A.J.1
Severin, J.2
Ureta-Vidal, A.3
Heng, L.4
Durbin, R.5
Birney, E.6
-
158
-
-
67749113400
-
Rapid evolution of immune proteins in social insects
-
Viljakainen L, Evans JD, Hasselmann M, Rueppell O, Tingek S, Pamilo P. 2009. Rapid evolution of immune proteins in social insects. Mol Biol Evol. 26:1791-1801.
-
(2009)
Mol Biol Evol.
, vol.26
, pp. 1791-1801
-
-
Viljakainen, L.1
Evans, J.D.2
Hasselmann, M.3
Rueppell, O.4
Tingek, S.5
Pamilo, P.6
-
160
-
-
33845421982
-
A phosphoinositide synthase required for a sustained light response
-
DOI 10.1523/JNEUROSCI.3673-06.2006
-
Wang T, Montell C. 2006. A phosphoinositide synthase required for a sustained light response. J Neurosci. 26:12816-12825. (Pubitemid 44904577)
-
(2006)
Journal of Neuroscience
, vol.26
, Issue.49
, pp. 12816-12825
-
-
Wang, T.1
Montell, C.2
-
161
-
-
79953324603
-
Correlating traits of gene retention, sequence divergence, duplicability and essentiality in vertebrates, arthropods, and fungi
-
Waterhouse RM, Zdobnov EM, Kriventseva EV. 2011. Correlating traits of gene retention, sequence divergence, duplicability and essentiality in vertebrates, arthropods, and fungi. Genome Biol Evol. 3:75-86.
-
(2011)
Genome Biol Evol.
, vol.3
, pp. 75-86
-
-
Waterhouse, R.M.1
Zdobnov, E.M.2
Kriventseva, E.V.3
-
162
-
-
78651305141
-
OrthoDB: The hierarchical catalog of eukaryotic orthologs in 2011
-
Waterhouse RM, Zdobnov EM, Tegenfeldt F, Li J, Kriventseva EV 2011. OrthoDB: The hierarchical catalog of eukaryotic orthologs in 2011. Nucleic Acids Res. 39:D283-D288.
-
(2011)
Nucleic Acids Res.
, vol.39
-
-
Waterhouse, R.M.1
Zdobnov, E.M.2
Tegenfeldt, F.3
Li, J.4
Kriventseva, E.V.5
-
163
-
-
80755144062
-
DroPhEA: Drosophila phenotype enrichment analysis for insect functional genomics
-
Weng MP, Liao BY. 2011. DroPhEA: Drosophila phenotype enrichment analysis for insect functional genomics. Bioinformatics 27:3218-3219.
-
(2011)
Bioinformatics
, vol.27
, pp. 3218-3219
-
-
Weng, M.P.1
Liao, B.Y.2
-
164
-
-
0030890625
-
Biology of wolbachia
-
Werren JH. 1997. Biology of Wolbachia. Annu Rev Entomol. 42:587-609.
-
(1997)
Annu Rev Entomol.
, vol.42
, pp. 587-609
-
-
Werren, J.H.1
-
165
-
-
74549184089
-
Functional and evolutionary insights from the genomes of three parasitoid Nasonia species
-
The Nasonia Genome Working Group
-
Werren JH, Richards S, Desjardins CA, Niehuis O, Gadau J, Colbourne JK The Nasonia Genome Working Group. 2010. Functional and evolutionary insights
-
(2010)
Science
, vol.327
, pp. 343-348
-
-
Werren, J.H.1
Richards, S.2
Desjardins, C.A.3
Niehuis, O.4
Gadau, J.5
Colbourne, J.K.6
-
166
-
-
8544225780
-
Accuracy and power of statistical methods for detecting adaptive evolution in protein coding sequences and for identifying positively selected sites
-
DOI 10.1534/genetics.104.031153
-
Wong WS, Yang Z, Goldman N, Nielsen R. 2004. Accuracy and power of statistical methods for detecting adaptive evolution in protein coding sequences and for identifying positively selected sites. Genetics 168:1041-1051. (Pubitemid 39491478)
-
(2004)
Genetics
, vol.168
, Issue.2
, pp. 1041-1051
-
-
Wong, W.S.W.1
Yang, Z.2
Goldman, N.3
Nielsen, R.4
-
167
-
-
79956306832
-
Genes involved in convergent evolution of eusociality in bees
-
Woodard SH, Fischman BJ, Venkat A, Hudson ME, Varala K, Cameron SA, Clark AG, Robinson GE. 2011. Genes involved in convergent evolution of eusociality in bees. Proc Natl Acad Sci U S A. 108: 7472-7477.
-
(2011)
Proc Natl Acad Sci U S A.
, vol.108
, pp. 7472-7477
-
-
Woodard, S.H.1
Fischman, B.J.2
Venkat, A.3
Hudson, M.E.4
Varala, K.5
Cameron, S.A.6
Clark, A.G.7
Robinson, G.E.8
-
168
-
-
79954989004
-
The genome of the fire ant Solenopsis invicta
-
Wurm Y, Wang J, Riba-Grognuz O, Corona M, Nygaard S, Hunt BG, Ingram KK, Falquet L, Nipitwattanaphon M, Gotzek D, et al. 2011. The genome of the fire ant Solenopsis invicta. Proc Natl Acad Sci U S A. 108:5679-5684.
-
(2011)
Proc Natl Acad Sci U S A.
, vol.108
, pp. 5679-5684
-
-
Wurm, Y.1
Wang, J.2
Riba-Grognuz, O.3
Corona, M.4
Nygaard, S.5
Hunt, B.G.6
Ingram, K.K.7
Falquet, L.8
Nipitwattanaphon, M.9
Gotzek, D.10
-
169
-
-
0031897964
-
Likelihood ratio tests for detecting positive selection and application to primate lysozyme evolution
-
Yang Z. 1998. Likelihood ratio tests for detecting positive selection and application to primate lysozyme evolution. Mol Biol Evol. 15: 568-573. (Pubitemid 28194621)
-
(1998)
Molecular Biology and Evolution
, vol.15
, Issue.5
, pp. 568-573
-
-
Yang, Z.1
-
170
-
-
34547803197
-
PAML 4: Phylogenetic analysis by maximum likelihood
-
DOI 10.1093/molbev/msm088
-
Yang Z. 2007. PAML 4: Phylogenetic analysis by maximum likelihood. Mol Biol Evol. 24:1586-1591. (Pubitemid 47236688)
-
(2007)
Molecular Biology and Evolution
, vol.24
, Issue.8
, pp. 1586-1591
-
-
Yang, Z.1
-
171
-
-
79952136825
-
Statistical properties of the branch-site test of positive selection
-
Yang Z, dos Reis M. 2011. Statistical properties of the branch-site test of positive selection. Mol Biol Evol. 28:1217-1228.
-
(2011)
Mol Biol Evol.
, vol.28
, pp. 1217-1228
-
-
Yang, Z.1
Dos Reis, M.2
-
172
-
-
0034097381
-
Codon-substitution models for heterogeneous selection pressure at amino acid sites
-
Yang Z, Nielsen R, Goldman N, Pedersen A-MK. 2000. Codon-substitution models for heterogeneous selection pressure at amino acid sites. Genetics 155:431-449. (Pubitemid 30257141)
-
(2000)
Genetics
, vol.155
, Issue.1
, pp. 431-449
-
-
Yang, Z.1
Nielsen, R.2
Goldman, N.3
Pedersen, A.-M.K.4
-
173
-
-
16344378246
-
Bayes empirical Bayes inference of amino acid sites under positive selection
-
DOI 10.1093/molbev/msi097
-
Yang Z, Wong WSW, Nielsen R. 2005. Bayes empirical bayes inference of amino acid sites under positive selection. Mol Biol Evol. 22: 1107-1118. (Pubitemid 40471423)
-
(2005)
Molecular Biology and Evolution
, vol.22
, Issue.4
, pp. 1107-1118
-
-
Yang, Z.1
Wong, W.S.W.2
Nielsen, R.3
-
174
-
-
0042471736
-
Accumulation of deleted mitochondrial DNA in aging Drosophila melanogaster
-
DOI 10.1266/ggs.78.245
-
Yui R, Ohno Y, Matsuura ET. 2003. Accumulation of deleted mitochondrial DNA in aging Drosophila melanogaster. Genes Genet Syst. 78: 245-251. (Pubitemid 37010406)
-
(2003)
Genes and Genetic Systems
, vol.78
, Issue.3
, pp. 245-251
-
-
Yui, R.1
Ohno, Y.2
Matsuura, E.T.3
-
175
-
-
84872783004
-
Comparative analysis of bat genomes provides insight into the evolution of flight and immunity
-
Zhang G, Cowled C, Shi Z, Huang Z, Bishop-Lilly KA, Fang X,Wynne JW, Xiong Z, Baker ML, Zhao W, et al. 2013. Comparative analysis of bat genomes provides insight into the evolution of flight and immunity. Science 339:456-460.
-
(2013)
Science
, vol.339
, pp. 456-460
-
-
Zhang, G.1
Cowled, C.2
Shi, Z.3
Huang, Z.4
Bishop-Lilly, K.A.5
Fang, X.6
Wynne, J.W.7
Xiong, Z.8
Baker, M.L.9
Zhao, W.10
-
176
-
-
3042637218
-
Frequent false detection of positive selection by the likelihood method with branch-site models
-
DOI 10.1093/molbev/msh117
-
Zhang J. 2004. Frequent false detection of positive selection by the likelihood method with branch-site models. Mol Biol Evol. 21: 1332-1339. (Pubitemid 38823736)
-
(2004)
Molecular Biology and Evolution
, vol.21
, Issue.7
, pp. 1332-1339
-
-
Zhang, J.1
-
177
-
-
27844439855
-
Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level
-
DOI 10.1093/molbev/msi237
-
Zhang J, Nielsen R, Yang Z. 2005. Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level. Mol Biol Evol. 22:2472-2479. (Pubitemid 41661383)
-
(2005)
Molecular Biology and Evolution
, vol.22
, Issue.12
, pp. 2472-2479
-
-
Zhang, J.1
Nielsen, R.2
Yang, Z.3
-
178
-
-
84866174382
-
Phylogenetic and transcriptomic analysis of chemosensory receptors in a pair of divergent ant species reveals sex-specific signatures of odor coding
-
Zhou X, Slone JD, Rokas A, Berger SL, Liebig J, Ray A, Reinberg D, Zwiebel LJ. 2012. Phylogenetic and transcriptomic analysis of chemosensory receptors in a pair of divergent ant species reveals sex-specific signatures of odor coding. PLoS Genet. 8:e1002930..
-
(2012)
PLoS Genet.
, vol.8
-
-
Zhou, X.1
Slone, J.D.2
Rokas, A.3
Berger, S.L.4
Liebig, J.5
Ray, A.6
Reinberg, D.7
Zwiebel, L.J.8
|