메뉴 건너뛰기




Volumn 10, Issue 1, 2010, Pages

Mitochondrial genome evolution in fire ants (Hymenoptera: Formicidae)

Author keywords

[No Author keywords available]

Indexed keywords

ANT; EVOLUTIONARY BIOLOGY; GENETIC ANALYSIS; GENOME; MITOCHONDRIAL DNA; PHYLOGENY; PROTEIN; TAXONOMY;

EID: 77957341496     PISSN: None     EISSN: 14712148     Source Type: Journal    
DOI: 10.1186/1471-2148-10-300     Document Type: Article
Times cited : (58)

References (115)
  • 1
    • 48349115697 scopus 로고    scopus 로고
    • Mitogenomic relationships of placental mammals and molecular estimates of their divergences
    • 10.1016/j.gene.2008.05.024. 18590805
    • Mitogenomic relationships of placental mammals and molecular estimates of their divergences. U Arnason JA Adegoke A Gullberg EH Harley A Janke M Kullberg, Gene 2008 421 37 51 10.1016/j.gene.2008.05.024 18590805
    • (2008) Gene , vol.421 , pp. 37-51
    • Arnason, U.1    Adegoke, J.A.2    Gullberg, A.3    Harley, E.H.4    Janke, A.5    Kullberg, M.6
  • 2
    • 23944461017 scopus 로고    scopus 로고
    • Complete mitochondrial DNA sequences of six snakes: Phylogenetic relationships and molecular evolution of genomic features
    • 10.1007/s00239-004-0190-9. 16007493
    • Complete mitochondrial DNA sequences of six snakes: phylogenetic relationships and molecular evolution of genomic features. S Dong Y Kumazawa, J Mol Evol 2005 61 12 22 10.1007/s00239-004-0190-9 16007493
    • (2005) J Mol Evol , vol.61 , pp. 12-22
    • Dong, S.1    Kumazawa, Y.2
  • 3
    • 33845866870 scopus 로고    scopus 로고
    • A mitochondrial genome phylogeny of Diptera: Whole genome sequence data accurately resolve relationships over broad timescales with high precision
    • DOI 10.1111/j.1365-3113.2006.00355.x
    • A mitochondrial genome phylogeny of Diptera: whole genome sequence data accurately resolve relationships over broad timescales with high precision. SL Cameron CL Lambkin SC Barker MF Whiting, Syst Entomol 2007 32 40 59 10.1111/j.1365-3113.2006.00355.x (Pubitemid 46016028)
    • (2007) Systematic Entomology , vol.32 , Issue.1 , pp. 40-59
    • Cameron, S.L.1    Lambkin, C.L.2    Barker, S.C.3    Whiting, M.F.4
  • 4
    • 70349434888 scopus 로고    scopus 로고
    • Nonstationary evolution and compositional heterogeneity in beetle mitochondrial phylogenomics
    • 10.1093/sysbio/syp037. 20525592
    • Nonstationary evolution and compositional heterogeneity in beetle mitochondrial phylogenomics. NC Sheffield H Song SL Cameron MF Whiting, Syst Biol 2009 58 381 394 10.1093/sysbio/syp037 20525592
    • (2009) Syst Biol , vol.58 , pp. 381-394
    • Sheffield, N.C.1    Song, H.2    Cameron, S.L.3    Whiting, M.F.4
  • 5
    • 52049118280 scopus 로고    scopus 로고
    • A preliminary mitochondrial genome phylogeny of Orthoptera (Insecta) and approaches to maximizing phylogenetic signal found within mitochondrial genome data
    • 10.1016/j.ympev.2008.07.004. 18672078
    • A preliminary mitochondrial genome phylogeny of Orthoptera (Insecta) and approaches to maximizing phylogenetic signal found within mitochondrial genome data. JD Fenn H Song SL Cameron MF Whiting, Mol Phylogenet Evol 2008 49 59 68 10.1016/j.ympev.2008.07.004 18672078
    • (2008) Mol Phylogenet Evol , vol.49 , pp. 59-68
    • Fenn, J.D.1    Song, H.2    Cameron, S.L.3    Whiting, M.F.4
  • 6
    • 67349206083 scopus 로고    scopus 로고
    • Phylogenetic approaches for the analysis of mitochondrial genome sequence data in the Hymenoptera - A lineage with both rapidly and slowly evolving mitochondrial sequences
    • 10.1016/j.ympev.2009.04.001
    • Phylogenetic approaches for the analysis of mitochondrial genome sequence data in the Hymenoptera - A lineage with both rapidly and slowly evolving mitochondrial sequences. M Dowton SL Cameron AD Austin MF Whiting, Mol Phyl Evol 2009 52 512 519 10.1016/j.ympev.2009.04.001
    • (2009) Mol Phyl Evol , vol.52 , pp. 512-519
    • Dowton, M.1    Cameron, S.L.2    Austin, A.D.3    Whiting, M.F.4
  • 7
    • 0032537194 scopus 로고    scopus 로고
    • Gene translocation links insects and crustaceans
    • 10.1038/33577. 9565028
    • Gene translocation links insects and crustaceans. JL Boore DV Lavrov WM Brown, Nature 1998 392 667 668 10.1038/33577 9565028
    • (1998) Nature , vol.392 , pp. 667-668
    • Boore, J.L.1    Lavrov, D.V.2    Brown, W.M.3
  • 8
    • 0033088439 scopus 로고    scopus 로고
    • Relationships among the cyclostomebraconid (Hymenoptera: Braconidae) subfamilies inferred from a mitochondrial tRNA gene rearrangement
    • 10.1006/mpev.1998.0580. 10191072
    • Relationships among the cyclostomebraconid (Hymenoptera: Braconidae) subfamilies inferred from a mitochondrial tRNA gene rearrangement. M Dowton, Mol Phylogenet Evol 1999 11 283 287 10.1006/mpev.1998.0580 10191072
    • (1999) Mol Phylogenet Evol , vol.11 , pp. 283-287
    • Dowton, M.1
  • 9
    • 36148999042 scopus 로고    scopus 로고
    • The mitochondrial genome of the screamer louse Bothriometopus (Phthiraptera: Ischnocera): effects of extensive gene rearrangements on the evolution of the genome
    • 10.1007/s00239-007-9042-8. 17925995
    • The mitochondrial genome of the screamer louse Bothriometopus (Phthiraptera: Ischnocera): effects of extensive gene rearrangements on the evolution of the genome. SL Cameron KP Johnson MF Whiting, J Mol Evol 2007 65 589 604 10.1007/s00239-007-9042-8 17925995
    • (2007) J Mol Evol , vol.65 , pp. 589-604
    • Cameron, S.L.1    Johnson, K.P.2    Whiting, M.F.3
  • 10
    • 78049243599 scopus 로고    scopus 로고
    • Evolution of the mitochondrial genomes of gall midge (Diptera: Cecidomyiidae): Rearrangements and several truncation of the tRNA genes
    • 10.1093/gbe/evp027. 20333197
    • Evolution of the mitochondrial genomes of gall midge (Diptera: Cecidomyiidae): Rearrangements and several truncation of the tRNA genes. AT Beckenbach JB Joy, Genome Biol Evol 2009 1 278 287 10.1093/gbe/evp027 20333197
    • (2009) Genome Biol Evol , vol.1 , pp. 278-287
    • Beckenbach, A.T.1    Joy, J.B.2
  • 11
    • 67649347914 scopus 로고    scopus 로고
    • Characterization of 67 mitochondrial tRNA gene rearrangements in the Hymenoptera suggests that mitochondrial tRNA gene position is selectively neutral
    • 10.1093/molbev/msp072. 19359443
    • Characterization of 67 mitochondrial tRNA gene rearrangements in the Hymenoptera suggests that mitochondrial tRNA gene position is selectively neutral. M Dowton SL Cameron JI Dowavic AD Austin MJ Whiting, Mol Biol Evol 2009 26 1607 1617 10.1093/molbev/msp072 19359443
    • (2009) Mol Biol Evol , vol.26 , pp. 1607-1617
    • Dowton, M.1    Cameron, S.L.2    Dowavic, J.I.3    Austin, A.D.4    Whiting, M.J.5
  • 12
    • 0031769998 scopus 로고    scopus 로고
    • Big trees from little genomes: Mitochondrial gene order as a phylogenetic tool
    • 10.1016/S0959-437X(98)80035-X. 9914213
    • Big trees from little genomes: mitochondrial gene order as a phylogenetic tool. JL Boore WM Brown, Curr Opin Genet Dev 1998 8 668 674 10.1016/S0959-437X(98)80035-X 9914213
    • (1998) Curr Opin Genet Dev , vol.8 , pp. 668-674
    • Boore, J.L.1    Brown, W.M.2
  • 13
    • 0027301017 scopus 로고
    • The phylogeny of echinoderm classes based on mitochondrial gene arrangements
    • 10.1007/BF00556359. 8350349
    • The phylogeny of echinoderm classes based on mitochondrial gene arrangements. MJ Smith A Arndt S Gorski E Fajber, J Mol Evol 1993 36 545 54 10.1007/BF00556359 8350349
    • (1993) J Mol Evol , vol.36 , pp. 545-54
    • Smith, M.J.1    Arndt, A.2    Gorski, S.3    Fajber, E.4
  • 14
    • 0028976102 scopus 로고
    • Deducing the pattern of arthropod phylogeny from mitochondrial DNA rearrangements
    • 10.1038/376163a0. 7603565
    • Deducing the pattern of arthropod phylogeny from mitochondrial DNA rearrangements. JL Boore TM Collins D Stanton LL Daehler WM Brown, Nature 1995 376 163 165 10.1038/376163a0 7603565
    • (1995) Nature , vol.376 , pp. 163-165
    • Boore, J.L.1    Collins, T.M.2    Stanton, D.3    Daehler, L.L.4    Brown, W.M.5
  • 15
    • 0029096503 scopus 로고
    • Variations in mitochondrial tRNA gene organization of reptiles as phylogenetic markers
    • 7476123
    • Variations in mitochondrial tRNA gene organization of reptiles as phylogenetic markers. Y Kumazawa M Nishida, Mol Biol Evol 1995 12 759 772 7476123
    • (1995) Mol Biol Evol , vol.12 , pp. 759-772
    • Kumazawa, Y.1    Nishida, M.2
  • 16
    • 0033213874 scopus 로고    scopus 로고
    • Mitogenomics: Digging deeper with complete mitochondrial genomes
    • 10.1016/S0169-5347(99)01660-2. 10481201
    • Mitogenomics: digging deeper with complete mitochondrial genomes. JP Curole TD Kocher, Trends Ecol Evol 1999 14 394 398 10.1016/S0169-5347(99)01660-2 10481201
    • (1999) Trends Ecol Evol , vol.14 , pp. 394-398
    • Curole, J.P.1    Kocher, T.D.2
  • 17
    • 0000821712 scopus 로고    scopus 로고
    • Hymenopteran biodiversity: Some alien notions
    • Hymenopteran biodiversity: some alien notions. EE Grissell, Am Entomol 1999 45 235 244
    • (1999) Am Entomol , vol.45 , pp. 235-244
    • Grissell, E.E.1
  • 18
    • 52549130466 scopus 로고    scopus 로고
    • Evolution of the mitochondrial genome of Metazoa as exemplified by the comparison of congeneric species
    • 10.1038/hdy.2008.62. 18612321
    • Evolution of the mitochondrial genome of Metazoa as exemplified by the comparison of congeneric species. C Gissi F Iannelli G Pesole, Heredity 2008 101 301 320 10.1038/hdy.2008.62 18612321
    • (2008) Heredity , vol.101 , pp. 301-320
    • Gissi, C.1    Iannelli, F.2    Pesole, G.3
  • 19
    • 0001767512 scopus 로고
    • A revision of the fire ants, Solenopsis geminata group (Hymenoptera: Formicidae: Myrmicinae)
    • A revision of the fire ants, Solenopsis geminata group (Hymenoptera: Formicidae: Myrmicinae). JC Trager, J New York Entomol Soc 1991 99 141 198
    • (1991) J New York Entomol Soc , vol.99 , pp. 141-198
    • Trager, J.C.1
  • 20
    • 24744443419 scopus 로고    scopus 로고
    • Cladistic analysis of the fire ants of the Solenopsis saevissima species-group (Hymenoptera: Formicidae)
    • DOI 10.1111/j.1463-6409.2005.00203.x
    • Cladistic analysis of the fire ants of the Solenopsis saevissima species-group (Hymenoptera: Formicidae). J Pitts KG McHugh Ross, Zool Scripta 2005 34 493 505 10.1111/j.1463-6409.2005.00203.x (Pubitemid 41765253)
    • (2005) Zoologica Scripta , vol.34 , Issue.5 , pp. 493-505
    • Pitts, J.P.1    McHugh, J.V.2    Ross, K.G.3
  • 21
    • 52449104857 scopus 로고    scopus 로고
    • Rapidly evolving mitochondrial genome and directional selection in mitochondrial genes in the parasitic wasp Nasonia (Hymenoptera: Pteromalidae)
    • 10.1093/molbev/msn159. 18653734
    • Rapidly evolving mitochondrial genome and directional selection in mitochondrial genes in the parasitic wasp Nasonia (Hymenoptera: Pteromalidae). DC Oliveira R Raychoudhury DV Lavrov JH Werren, Mol Biol Evol 2008 25 2167 2180 10.1093/molbev/msn159 18653734
    • (2008) Mol Biol Evol , vol.25 , pp. 2167-2180
    • Oliveira, D.C.1    Raychoudhury, R.2    Lavrov, D.V.3    Werren, J.H.4
  • 22
    • 0031972161 scopus 로고    scopus 로고
    • Likelihood models for detecting positively selected amino acid sites and applications to the HIV-1 envelope gene
    • 9539414
    • Likelihood models for detecting positively selected amino acid sites and applications to the HIV-1 envelope gene. R Nielsen Z Yang, Genetics 1998 148 929 936 9539414
    • (1998) Genetics , vol.148 , pp. 929-936
    • Nielsen, R.1    Yang, Z.2
  • 23
    • 0034097381 scopus 로고    scopus 로고
    • Codon-substitution models for heterogeneous selection pressure at amino acid sites
    • Codon-substitution models for heterogeneous selection pressure at amino acid sites. Z Yang R Nielsen N Goldman A-MK Pedersen, Genetics 2000 155 341 449
    • (2000) Genetics , vol.155 , pp. 341-449
    • Yang, Z.1    Nielsen, R.2    Goldman, N.3    A-Mk, P.4
  • 24
    • 15944409594 scopus 로고    scopus 로고
    • The position of the Hymenoptera within the Holometabola as inferred from the mitochondrial genome of Perga condei (Hymenoptera: Symphyta: Pergidae)
    • DOI 10.1016/j.ympev.2004.11.005
    • The position of the Hymenoptera within the Holometabola as inferred from the mitochondrial genome of Perga condei (Hymeoptera: Symphyta: Pergidae). LR Castro M Dowton, Mol Phyl Evol 2005 14 469 479 10.1016/j.ympev.2004.11.005 (Pubitemid 40427960)
    • (2005) Molecular Phylogenetics and Evolution , vol.34 , Issue.3 , pp. 469-479
    • Castro, L.R.1    Dowton, M.2
  • 26
    • 65349117585 scopus 로고    scopus 로고
    • The complete mitochondrial genome of Diadegma semiclausum (Hymenoptera: Ichneumonidae) indicates extensive independent evolutionary events
    • 10.1139/G09-008. 19370087
    • The complete mitochondrial genome of Diadegma semiclausum (Hymenoptera: Ichneumonidae) indicates extensive independent evolutionary events. S-J Wei M Shi J-H He M Sharkey X-X Chen, Genome 2009 52 308 319 10.1139/G09-008 19370087
    • (2009) Genome , vol.52 , pp. 308-319
    • Wei, S.-J.1    Shi, M.2    He, J.-H.3    Sharkey, M.4    Chen, X.-X.5
  • 27
    • 0027398565 scopus 로고
    • The mitochondrial genome of the honeybee Apis mellifera - Complete sequence and genome organization
    • 8417993
    • The mitochondrial genome of the honeybee Apis mellifera - complete sequence and genome organization. RH Crozier YC Crozier, Genetics 1993 133 97 117 8417993
    • (1993) Genetics , vol.133 , pp. 97-117
    • Crozier, R.H.1    Crozier, Y.C.2
  • 28
    • 0037403369 scopus 로고    scopus 로고
    • Frequent mitochondrial gene rearrangements at the hymenopteran nad3-nad5 junction
    • 10.1007/s00239-002-2420-3. 12698290
    • Frequent mitochondrial gene rearrangements at the hymenopteran nad3-nad5 junction. M Dowton LR Castro SL Campbell SD Bargon AD Austin, J Mol Evol 2003 56 517 526 10.1007/s00239-002-2420-3 12698290
    • (2003) J Mol Evol , vol.56 , pp. 517-526
    • Dowton, M.1    Castro, L.R.2    Campbell, S.L.3    Bargon, S.D.4    Austin, A.D.5
  • 29
    • 0033062252 scopus 로고    scopus 로고
    • Evolutionary dynamics of a mitochondrial rearrangement "hot spot" in the Hymenoptera
    • 10028295
    • Evolutionary dynamics of a mitochondrial rearrangement "hot spot" in the Hymenoptera. M Dowton AD Austin, Mol Biol Evol 1999 16 298 309 10028295
    • (1999) Mol Biol Evol , vol.16 , pp. 298-309
    • Dowton, M.1    Austin, A.D.2
  • 30
    • 33750898067 scopus 로고    scopus 로고
    • Mitochondrial genomes of Vanhornia eucnemidarum (Apocrita: Vanhorniidae) and Primeuchroeus spp. (Aculeata: Chrysididae): evidence of rearranged mitochondrial genomes within the Apocrita (Insecta: Hymenoptera)
    • 10.1139/G06-030. 16936784
    • Mitochondrial genomes of Vanhornia eucnemidarum (Apocrita: Vanhorniidae) and Primeuchroeus spp. (Aculeata: Chrysididae): evidence of rearranged mitochondrial genomes within the Apocrita (Insecta: Hymenoptera). LR Castro K Ruberu M Dowton, Genome 2006 49 752 766 10.1139/G06-030 16936784
    • (2006) Genome , vol.49 , pp. 752-766
    • Castro, L.R.1    Ruberu, K.2    Dowton, M.3
  • 31
    • 33947577385 scopus 로고    scopus 로고
    • The complete nucleotide sequence and gene organization of the mitochondrial genome of the bumblebee, Bombus ignitus (Hymenoptera: Apidae)
    • 10.1016/j.gene.2006.12.031. 17321076
    • The complete nucleotide sequence and gene organization of the mitochondrial genome of the bumblebee, Bombus ignitus (Hymenoptera: Apidae). SY Cha HJ Yoon EM Lee MH Yoon JS Hwang BR Jin YS Han I Kim, Gene 2007 392 206 220 10.1016/j.gene.2006.12.031 17321076
    • (2007) Gene , vol.392 , pp. 206-220
    • Cha, S.Y.1    Yoon, H.J.2    Lee, E.M.3    Yoon, M.H.4    Hwang, J.S.5    Jin, B.R.6    Han, Y.S.7    Kim, I.8
  • 32
    • 46649109951 scopus 로고    scopus 로고
    • The mitochondrial genome of the stingless bee Melipona bicolor (Hymenoptera, Apidae, Meliponini): Sequence, gene organization and a unique tRNA translocation event conserved across the tribe Meliponini
    • 10.1590/S1415-47572008000300010
    • The mitochondrial genome of the stingless bee Melipona bicolor (Hymenoptera, Apidae, Meliponini): Sequence, gene organization and a unique tRNA translocation event conserved across the tribe Meliponini. D Silvestre M Dowton MC Arias, Genet Mol Biol 2008 31 451 460 10.1590/S1415-47572008000300010
    • (2008) Genet Mol Biol , vol.31 , pp. 451-460
    • Silvestre, D.1    Dowton, M.2    Arias, M.C.3
  • 33
    • 0023231203 scopus 로고
    • Duplication and remoulding of tRNA genes during the evolutionary rearrangement of mitochondrial genomes
    • 10.1038/329853a0. 3670390
    • Duplication and remoulding of tRNA genes during the evolutionary rearrangement of mitochondrial genomes. P Cantatore MN Gadaleta M Roberti C Saccne AC Wilson, Nature 1987 329 853 855 10.1038/329853a0 3670390
    • (1987) Nature , vol.329 , pp. 853-855
    • Cantatore, P.1    Gadaleta, M.N.2    Roberti, M.3    Saccne, C.4    Wilson, A.C.5
  • 34
    • 3643114575 scopus 로고    scopus 로고
    • Universal rules and idiosyncratic features in tRNA identity
    • 10.1093/nar/26.22.5017
    • Universal rules and idiosyncratic features in tRNA identity. R Giegé M Sissler C Florentz, Nucl Acid Res 1998 26 5017 5035 10.1093/nar/26.22.5017
    • (1998) Nucl Acid Res , vol.26 , pp. 5017-5035
    • Giegé, R.1    Sissler, M.2    Florentz, C.3
  • 35
    • 0032513368 scopus 로고    scopus 로고
    • Evolution of a transfer RNA gene through a point mutation in the anticodon
    • 10.1126/science.279.5357.1665. 9497276
    • Evolution of a transfer RNA gene through a point mutation in the anticodon. ME Saks JR Sampson J Abelson, Science 1998 279 1665 1670 10.1126/science.279.5357.1665 9497276
    • (1998) Science , vol.279 , pp. 1665-1670
    • Saks, M.E.1    Sampson, J.R.2    Abelson, J.3
  • 36
    • 0034685609 scopus 로고    scopus 로고
    • TRNA Leucine identity and recognition sets
    • 10.1006/jmbi.2000.3694. 10801348
    • tRNA Leucine identity and recognition sets. G Tocchini-Valentini ME Saks J Abelson, J Mol Biol 2000 298 779 793 10.1006/jmbi.2000.3694 10801348
    • (2000) J Mol Biol , vol.298 , pp. 779-793
    • Tocchini-Valentini, G.1    Saks, M.E.2    Abelson, J.3
  • 37
    • 0142075820 scopus 로고    scopus 로고
    • The evolution of tRNA-Leu genes in animal mitochondrial genomes
    • 10.1007/s00239-003-2494-6. 14708576
    • The evolution of tRNA-Leu genes in animal mitochondrial genomes. PG Higgs D Jameson H Jow M Rattray, J Mol Evol 2003 57 435 445 10.1007/s00239-003-2494-6 14708576
    • (2003) J Mol Evol , vol.57 , pp. 435-445
    • Higgs, P.G.1    Jameson, D.2    Jow, H.3    Rattray, M.4
  • 39
    • 0037498150 scopus 로고    scopus 로고
    • Transfer RNA paralogs: Evidence for genetic code-amino acid biosynthesis coevolution and an archeal root of life
    • 10.1016/S0378-1119(03)00552-3. 12801633
    • Transfer RNA paralogs: evidence for genetic code-amino acid biosynthesis coevolution and an archeal root of life. H Xue KL Tong C Marck H Grosjean JT Wong, Gene 2003 310 59 66 10.1016/S0378-1119(03)00552-3 12801633
    • (2003) Gene , vol.310 , pp. 59-66
    • Xue, H.1    Tong, K.L.2    Marck, C.3    Grosjean, H.4    Wong, J.T.5
  • 40
    • 13944278871 scopus 로고    scopus 로고
    • Transfer RNA recruitment in mitochondrial DNA
    • 10.1016/j.tig.2005.01.004. 15734570
    • Transfer RNA recruitment in mitochondrial DNA. DV Lavrov BF Lang, Trends Genet 2005 21 129 133 10.1016/j.tig.2005.01.004 15734570
    • (2005) Trends Genet , vol.21 , pp. 129-133
    • Lavrov, D.V.1    Lang, B.F.2
  • 41
    • 65649136238 scopus 로고    scopus 로고
    • Dalrymple: Analysis of the complement and molecular evolution of tRNA genes in cow
    • 10.1186/1471-2164-10-188. 19393063
    • Dalrymple: Analysis of the complement and molecular evolution of tRNA genes in cow. DTP Tang EA Glazov SM McWilliam WC Barris, BMC Genomics 2009 10 188 10.1186/1471-2164-10-188 19393063
    • (2009) BMC Genomics , vol.10 , pp. 188
    • Tang, D.T.P.1    Glazov, E.A.2    McWilliam, S.M.3    Barris, W.C.4
  • 42
    • 77958449472 scopus 로고    scopus 로고
    • The evolution of tRNA genes in Drosophila
    • 10.1093/gbe/evq034. 20624748
    • The evolution of tRNA genes in Drosophila. HH Rogers CM Bergman S Griffiths-Jones, Genome Biol Evol 2010 2 467 477 10.1093/gbe/evq034 20624748
    • (2010) Genome Biol Evol , vol.2 , pp. 467-477
    • Rogers, H.H.1    Bergman, C.M.2    Griffiths-Jones, S.3
  • 43
    • 77953481682 scopus 로고    scopus 로고
    • Undetected antisense tRNAs in mitochondrial genomes?
    • 10.1186/1745-6150-5-39. 20553583
    • Undetected antisense tRNAs in mitochondrial genomes? H Seligmann, Biology Direct 2010 5 39 10.1186/1745-6150-5-39 20553583
    • (2010) Biology Direct , vol.5 , pp. 39
    • Seligmann, H.1
  • 44
    • 77953162605 scopus 로고    scopus 로고
    • The complete mitochondrial genome of Evania appendigaster (Hymenoptera: Evaniidae) has low A+T content and a long intergenic spacer between atp8 and atp6
    • 10.1007/s11033-009-9640-1. 19655273
    • The complete mitochondrial genome of Evania appendigaster (Hymenoptera: Evaniidae) has low A+T content and a long intergenic spacer between atp8 and atp6. S-J Wei P Tang L-H Zheng M Shi X-X Chen, Mol Biol Rep 2010 37 1931 1942 10.1007/s11033-009-9640-1 19655273
    • (2010) Mol Biol Rep , vol.37 , pp. 1931-1942
    • Wei, S.-J.1    Tang, P.2    Zheng, L.-H.3    Shi, M.4    Chen, X.-X.5
  • 45
    • 16344387680 scopus 로고    scopus 로고
    • Widespread recombination in published animal mtDNA sequences
    • 10.1093/molbev/msi084. 15647518
    • Widespread recombination in published animal mtDNA sequences. AD Tsaousis DP Martin ED Ladoukakis D Posada E Zouros, Mol Biol Evol 2005 22 925 933 10.1093/molbev/msi084 15647518
    • (2005) Mol Biol Evol , vol.22 , pp. 925-933
    • Tsaousis, A.D.1    Martin, D.P.2    Ladoukakis, E.D.3    Posada, D.4    Zouros, E.5
  • 46
    • 8444235408 scopus 로고    scopus 로고
    • A broad survey of recombination in animal mitochondria
    • 10.1093/molbev/msh244. 15342796
    • A broad survey of recombination in animal mitochondria. G Piganeau M Gardner A Eyre-Walker, Mol Biol Evol 2004 21 2319 2325 10.1093/molbev/msh244 15342796
    • (2004) Mol Biol Evol , vol.21 , pp. 2319-2325
    • Piganeau, G.1    Gardner, M.2    Eyre-Walker, A.3
  • 47
    • 35248880386 scopus 로고    scopus 로고
    • Mitochondrial DNA recombination in a free-ranging Australian lizard
    • 10.1098/rsbl.2006.0587. 17251121
    • Mitochondrial DNA recombination in a free-ranging Australian lizard. B Ujvari Dowton M Madsen T., Biol Lett 2007 3 189 192 10.1098/rsbl.2006.0587 17251121
    • (2007) Biol Lett , vol.3 , pp. 189-192
    • Ujvari Dowton, B.1    Madsen, M.2
  • 48
    • 0036097812 scopus 로고    scopus 로고
    • Evaluation of methods for detecting recombination from DNA sequences: Empirical data
    • 11961104
    • Evaluation of methods for detecting recombination from DNA sequences: empirical data. D Posada, Mol Biol Evol 2002 19 708 717 11961104
    • (2002) Mol Biol Evol , vol.19 , pp. 708-717
    • Posada, D.1
  • 49
    • 28844438842 scopus 로고    scopus 로고
    • Molecular phylogeny of fire ants of the Solenopsis saevissima species-group based on mtDNA sequences
    • 10.1016/j.ympev.2005.07.014. 16172006
    • Molecular phylogeny of fire ants of the Solenopsis saevissima species-group based on mtDNA sequences. DD Shoemaker ME Ahrens KG Ross, Mol Phylogenet Evol 2006 38 200 215 10.1016/j.ympev.2005.07.014 16172006
    • (2006) Mol Phylogenet Evol , vol.38 , pp. 200-215
    • Shoemaker, D.D.1    Ahrens, M.E.2    Ross, K.G.3
  • 50
    • 33750052881 scopus 로고    scopus 로고
    • Molecular analyses of the Apocrita (Insecta : Hymenoptera) suggest that the Chalcidoidea are sister to the diaprioid complex
    • DOI 10.1071/IS06002
    • Molecular analyses of the Apocrita (Insecta: Hymenoptera) suggests that the Chalcidoidea are sister to the diaprioid complex. LR Castro M Dowton, Invert Syst 2006 20 603 614 10.1071/IS06002 (Pubitemid 44579365)
    • (2006) Invertebrate Systematics , vol.20 , Issue.5 , pp. 603-614
    • Castro, L.R.1    Dowton, M.2
  • 51
    • 0027941868 scopus 로고
    • Molecular phylogeny of the insect order Hymenoptera: Apocritan relationships
    • 10.1073/pnas.91.21.9911. 7937916
    • Molecular phylogeny of the insect order Hymenoptera: Apocritan relationships. M Dowton AD Austin, Proc Natl Acad Sci USA 1994 91 9911 9915 10.1073/pnas.91.21.9911 7937916
    • (1994) Proc Natl Acad Sci USA , vol.91 , pp. 9911-9915
    • Dowton, M.1    Austin, A.D.2
  • 52
    • 0344368034 scopus 로고    scopus 로고
    • Bartowsky: Molecular phylogeny of the apocritan wasps: The Proctotrupomorpha and Evaniamorpha
    • 10.1046/j.1365-3113.1997.d01-42.x
    • Bartowsky: Molecular phylogeny of the apocritan wasps: the Proctotrupomorpha and Evaniamorpha. M Dowton AD Austin N Dillon, Syst Entomol 1997 22 245 255 10.1046/j.1365-3113.1997.d01-42.x
    • (1997) Syst Entomol , vol.22 , pp. 245-255
    • Dowton, M.1    Austin, A.D.2    Dillon, N.3
  • 53
    • 0001634444 scopus 로고
    • An outline of evolution of the hymenopterous insects (Order Vespida)
    • An outline of evolution of the hymenopterous insects (Order Vespida). AP Rasnitsyn, Oriental Insects 1988 22 115 145
    • (1988) Oriental Insects , vol.22 , pp. 115-145
    • Rasnitsyn, A.P.1
  • 54
    • 38349102183 scopus 로고    scopus 로고
    • Phylogeny and classification of Hymenoptera
    • Phylogeny and classification of Hymenoptera. MJ Sharkey, Zootaxa 2007 1668 521 548
    • (2007) Zootaxa , vol.1668 , pp. 521-548
    • Sharkey, M.J.1
  • 55
    • 0032857898 scopus 로고    scopus 로고
    • Phylogeny and evolution of wasps, ants and bees (Hymenoptera, Chrysidoidea, Vespoidea and Apoidea)
    • DOI 10.1046/j.1463-6409.1999.00003.x
    • Phylogeny and evolution of wasps, ants and bees (Hymenoptera, Chrysidoidea, Vespoidea, and Apoidea). DJ Brothers, Zool Scripta 1999 28 233 249 10.1046/j.1463-6409.1999.00003.x (Pubitemid 29447889)
    • (1999) Zoologica Scripta , vol.28 , Issue.1-2 , pp. 233-249
    • Brothers, D.J.1
  • 56
    • 49749148749 scopus 로고    scopus 로고
    • Molecular phylogenetics of Vespoidea indicate paraphyly of the superfamily and novel relationships of its component families and subfamilies
    • 10.1111/j.1463-6409.2008.00340.x
    • Molecular phylogenetics of Vespoidea indicate paraphyly of the superfamily and novel relationships of its component families and subfamilies. EM Pilgrim CD von Dohlen JP Pitts, Zool Scripta 2008 37 539 560 10.1111/j.1463-6409.2008.00340.x
    • (2008) Zool Scripta , vol.37 , pp. 539-560
    • Pilgrim, E.M.1    Von Dohlen, C.D.2    Pitts, J.P.3
  • 57
    • 0031829758 scopus 로고    scopus 로고
    • Inferring pattern and process: Maximum-likelihood implementation of a nonhomogeneous model of DNA sequence evolution for phylogenetic analysis
    • 9656487
    • Inferring pattern and process: maximum-likelihood implementation of a nonhomogeneous model of DNA sequence evolution for phylogenetic analysis. N Galtier M Gouy, Mol Biol Evol 1998 15 871 879 9656487
    • (1998) Mol Biol Evol , vol.15 , pp. 871-879
    • Galtier, N.1    Gouy, M.2
  • 58
    • 35248857403 scopus 로고    scopus 로고
    • Efficient likelihood computations with non-reversible models of evolution
    • 10.1080/10635150600975218. 17060197
    • Efficient likelihood computations with non-reversible models of evolution. B Boussau M Gouy, Syst Biol 2006 55 756 768 10.1080/10635150600975218 17060197
    • (2006) Syst Biol , vol.55 , pp. 756-768
    • Boussau, B.1    Gouy, M.2
  • 59
    • 0036097894 scopus 로고    scopus 로고
    • Testing a covariotide model of DNA substitution
    • 11961103
    • Testing a covariotide model of DNA substitution. JP Huelsenbeck, Mol Biol Evol 2002 19 698 707 11961103
    • (2002) Mol Biol Evol , vol.19 , pp. 698-707
    • Huelsenbeck, J.P.1
  • 60
    • 44649184070 scopus 로고    scopus 로고
    • A mixed branch length model of heterotachy improves phylogenetic accuracy
    • 10.1093/molbev/msn042. 18319244
    • A mixed branch length model of heterotachy improves phylogenetic accuracy. B Kolaczkowski JW Thornton, Mol Biol Evol 2008 25 1054 1066 10.1093/molbev/msn042 18319244
    • (2008) Mol Biol Evol , vol.25 , pp. 1054-1066
    • Kolaczkowski, B.1    Thornton, J.W.2
  • 61
    • 0035986877 scopus 로고    scopus 로고
    • Contrasting rates of mitochondrial molecular evolution in parasitic Diptera and Hymenoptera
    • 12082129
    • Contrasting rates of mitochondrial molecular evolution in parasitic Diptera and Hymenoptera. LR Castro AD Austin M Dowton, Mol Biol Evol 2002 19 1100 1113 12082129
    • (2002) Mol Biol Evol , vol.19 , pp. 1100-1113
    • Castro, L.R.1    Austin, A.D.2    Dowton, M.3
  • 62
    • 0029619002 scopus 로고
    • Increased genetic diversity in mitochondrial genes is correlated with the evolution of parasitism in the Hymenoptera
    • 10.1007/BF00173176. 8587141
    • Increased genetic diversity in mitochondrial genes is correlated with the evolution of parasitism in the Hymenoptera. M Dowton AD Austin, J Mol Evol 1995 41 958 965 10.1007/BF00173176 8587141
    • (1995) J Mol Evol , vol.41 , pp. 958-965
    • Dowton, M.1    Austin, A.D.2
  • 63
    • 33845900956 scopus 로고    scopus 로고
    • Testing for covarion-like evolution in protein sequences
    • 10.1093/molbev/msl155. 17056642
    • Testing for covarion-like evolution in protein sequences. H-C Wang M Specer E Susko AJ Roger, Mol Biol Evol 2006 24 294 305 10.1093/molbev/msl155 17056642
    • (2006) Mol Biol Evol , vol.24 , pp. 294-305
    • Wang, H.-C.1    Specer, M.2    Susko, E.3    Roger, A.J.4
  • 64
    • 7244221755 scopus 로고    scopus 로고
    • Performance of maximum parsimony and likelihood phylogenetics when evolution is heterogeneous
    • 10.1038/nature02917. 15496922
    • Performance of maximum parsimony and likelihood phylogenetics when evolution is heterogeneous. B Kolaczkowski JW Thornton, Nature 2004 431 980 984 10.1038/nature02917 15496922
    • (2004) Nature , vol.431 , pp. 980-984
    • Kolaczkowski, B.1    Thornton, J.W.2
  • 65
    • 38949188205 scopus 로고    scopus 로고
    • An independent heterotachy model and its implications for phylogeny and divergence time estimation
    • DOI 10.1016/j.ympev.2007.06.020, PII S1055790307002424
    • An independent heterotachy model and its implications for phylogeny and divergence time estimation. J Wu E Susko AJ Roger, Mol Phyl Evol 2008 46 801 806 10.1016/j.ympev.2007.06.020 (Pubitemid 351215914)
    • (2008) Molecular Phylogenetics and Evolution , vol.46 , Issue.2 , pp. 801-806
    • Wu, J.1    Susko, E.2    Roger, A.J.3
  • 66
    • 39649096708 scopus 로고    scopus 로고
    • Evaluation of the model handling heterotachy in phylogenetic inference
    • 10.1186/1471-2148-7-206. 17974035
    • Evaluation of the model handling heterotachy in phylogenetic inference. Y Zhou N Rodrigue N Lartillot H Philippe, BMC Evol Biol 2007 7 206 10.1186/1471-2148-7-206 17974035
    • (2007) BMC Evol Biol , vol.7 , pp. 206
    • Zhou, Y.1    Rodrigue, N.2    Lartillot, N.3    Philippe, H.4
  • 68
    • 77950596302 scopus 로고    scopus 로고
    • Bees, ants, and stinging wasps (Aculeata)
    • Oxford: Oxford University Press Hedges SB, Kumar S
    • Bees, ants, and stinging wasps (Aculeata). SG Brady L Larkin BN Danforth, The Timetree of Life Oxford: Oxford University Press, Hedges SB, Kumar S, 2009 264 269
    • (2009) The Timetree of Life , pp. 264-269
    • Brady, S.G.1    Larkin, L.2    Danforth, B.N.3
  • 69
    • 40349084441 scopus 로고    scopus 로고
    • Ancient rapid radiations of insects: Challenges for phylogenetic analysis
    • DOI 10.1146/annurev.ento.53.103106.093304
    • Ancient rapid radiations of insects: Challenges for phylogenetic analysis. JB Whitfield KM Kjer, Ann Rev Entomol 2008 53 449 472 10.1146/annurev.ento.53.103106.093304 (Pubitemid 351341950)
    • (2008) Annual Review of Entomology , vol.53 , pp. 449-472
    • Whitfield, J.B.1    Kjer, K.M.2
  • 70
    • 26244452955 scopus 로고    scopus 로고
    • Problems with mitochondrial DNA as a marker in population, phylogeographic and phylogenetic studies: The effects of inherited symbionts
    • 10.1098/rspb.2005.3056. 16048766
    • Problems with mitochondrial DNA as a marker in population, phylogeographic and phylogenetic studies: the effects of inherited symbionts. GDD Hurst FM Jiggins, Proc R Soc B 2005 272 1525 1534 10.1098/rspb.2005.3056 16048766
    • (2005) Proc R Soc B , vol.272 , pp. 1525-1534
    • Hurst, G.D.D.1    Jiggins, F.M.2
  • 71
    • 33750460281 scopus 로고    scopus 로고
    • Insights into social insects from the genome of the honeybee Apis mellifera
    • Honeybee Genome Sequencing Consortium, 10.1038/nature05260. 17073008
    • Insights into social insects from the genome of the honeybee Apis mellifera. Honeybee Genome Sequencing Consortium, Nature 2006 443 931 49 10.1038/nature05260 17073008
    • (2006) Nature , vol.443 , pp. 931-49
  • 72
    • 33750526053 scopus 로고    scopus 로고
    • Phylogenomic analysis reveals bees and wasps (Hymenoptera) at the base of the radiation of Holometabolous insects
    • 10.1101/gr.5204306. 17065606
    • Phylogenomic analysis reveals bees and wasps (Hymenoptera) at the base of the radiation of Holometabolous insects. J Savard D Tautz S Richards GM Weinstock RA Gibbs JH Werren H Tettelin MJ Lercher, Genome Res 2006 16 1334 1338 10.1101/gr.5204306 17065606
    • (2006) Genome Res , vol.16 , pp. 1334-1338
    • Savard, J.1    Tautz, D.2    Richards, S.3    Weinstock, G.M.4    Gibbs, R.A.5    Werren, J.H.6    Tettelin, H.7    Lercher, M.J.8
  • 73
    • 74549184089 scopus 로고    scopus 로고
    • Functional and Evolutionary Insights from the Genomes of Three Parasitoid Nasonia Species
    • Nasonia Genome Working Group 10.1126/science.1178028. 20075255
    • Functional and Evolutionary Insights from the Genomes of Three Parasitoid Nasonia Species. Nasonia Genome Working Group, Science 2010 327 343 348 10.1126/science.1178028 20075255
    • (2010) Science , vol.327 , pp. 343-348
  • 74
    • 60149092736 scopus 로고    scopus 로고
    • Construction and characterization of a BAC-library for a key pollinator, the bumblebee Bombus terrestris L
    • 10.1007/s00040-008-1034-1 - 48
    • Construction and characterization of a BAC-library for a key pollinator, the bumblebee Bombus terrestris L. L Wilfert M Mũoz-Torres C Reber-Funk R Schmid-Hempel J Tomkins J Gadau P Schmid-Hempel, Insect Soc 2009 56 44 - 48 10.1007/s00040-008-1034-1
    • (2009) Insect Soc , vol.56 , pp. 44
    • Wilfert, L.1    Mũoz-Torres, M.2    Reber-Funk, C.3    Schmid-Hempel, R.4    Tomkins, J.5    Gadau, J.6    Schmid-Hempel, P.7
  • 75
    • 34147104315 scopus 로고    scopus 로고
    • An annotated cDNA library and microarray for large-scale gene-expression studies in the ant, Solenopsis invicta
    • 10.1186/gb-2007-8-1-r9. 17224046
    • An annotated cDNA library and microarray for large-scale gene-expression studies in the ant, Solenopsis invicta. J Wang S Jemielity P Uva Y Wurm J Gräff L Keller, Genome Biol 2007 8 9 10.1186/gb-2007-8-1-r9 17224046
    • (2007) Genome Biol , vol.8 , pp. 189
    • Wang, J.1    Jemielity, S.2    Uva, P.3    Wurm, Y.4    Gräff, J.5    Keller, L.6
  • 76
    • 17844402014 scopus 로고    scopus 로고
    • Evolution of insect metamorphosis: A microarray-based study of larval and adult gene expression in the ant Camponotus festinatus
    • 15926695
    • Evolution of insect metamorphosis: A microarray-based study of larval and adult gene expression in the ant Camponotus festinatus. MAD Goodisman J Isoe DE Wheeler MA Wells, Evolution 2005 59 858 870 15926695
    • (2005) Evolution , vol.59 , pp. 858-870
    • Goodisman, M.A.D.1    Isoe, J.2    Wheeler, D.E.3    Wells, M.A.4
  • 77
    • 34249907545 scopus 로고    scopus 로고
    • Gene expression and the evolution of phenotypic diversity in social wasps
    • 10.1186/1741-7007-5-23. 17504526
    • Gene expression and the evolution of phenotypic diversity in social wasps. EA Hoffman MAD Goodisman, BMC Biology 2007 5 23 10.1186/1741-7007-5-23 17504526
    • (2007) BMC Biology , vol.5 , pp. 23
    • Hoffman, E.A.1    Goodisman, M.A.D.2
  • 79
    • 35448934071 scopus 로고    scopus 로고
    • Genetic variation and structure in native populations of the fire ant Solenopsis invicta: Evolutionary and demographic implications
    • DOI 10.1111/j.1095-8312.2007.00853.x
    • Genetic variation and structure in native populations of the fire ant Solenopsis invicta: evolutionary and demographic implications. KG Ross MJB Krieger L Keller DD Shoemaker, Biol J Linn Soc 2007 92 541 560 10.1111/j.1095-8312.2007.00853.x (Pubitemid 47620863)
    • (2007) Biological Journal of the Linnean Society , vol.92 , Issue.3 , pp. 541-560
    • Ross, K.G.1    Krieger, M.J.B.2    Keller, L.3    Shoemaker, D.D.4
  • 80
    • 0028251187 scopus 로고
    • Evolution, weighting, and phylogenetic utility of mitochondrial gene sequences and a compilation of conserved polymerase chain reaction primers
    • Evolution, weighting, and phylogenetic utility of mitochondrial gene sequences and a compilation of conserved polymerase chain reaction primers. C Simon F Frati A Beckenbach B Crespi H Liu P Flook, Ann Entomol Soc Am 1994 87 651 701
    • (1994) Ann Entomol Soc Am , vol.87 , pp. 651-701
    • Simon, C.1    Frati, F.2    Beckenbach, A.3    Crespi, B.4    Liu, H.5    Flook, P.6
  • 81
    • 37349096337 scopus 로고    scopus 로고
    • Nuclear mitochondrial-like sequences in ants: Evidence from Atta cephalotes (Formicidae: Attini)
    • 10.1111/j.1365-2583.2007.00771.x. 18093006
    • Nuclear mitochondrial-like sequences in ants: evidence from Atta cephalotes (Formicidae: Attini). J Martins SE Solomon AS Mikheyev UG Mueller A Ortiz M Bacci, Insect Mol Biol 2007 16 777 784 10.1111/j.1365-2583.2007.00771.x 18093006
    • (2007) Insect Mol Biol , vol.16 , pp. 777-784
    • Martins, J.1    Solomon, S.E.2    Mikheyev, A.S.3    Mueller, U.G.4    Ortiz, A.5    Bacci, M.6
  • 82
    • 34547657301 scopus 로고    scopus 로고
    • Analysis of nuclear copies of mitochondrial sequences in honeybee (Apis mellifera) genome
    • DOI 10.1093/molbev/msm068
    • Analysis of nuclear copies of mitochondrial sequences in honeybee (Apis mellifera) genome. SK Behura, Mol Evol Biol 2007 24 1492 1505 10.1093/molbev/msm068 (Pubitemid 47216598)
    • (2007) Molecular Biology and Evolution , vol.24 , Issue.7 , pp. 1492-1505
    • Behura, S.K.1
  • 83
    • 34548127994 scopus 로고    scopus 로고
    • Exceptionally High Density of NUMTs in the Honeybee Genome
    • 10.1093/molbev/msm055. 17383971
    • Exceptionally High Density of NUMTs in the Honeybee Genome. P Pamilo L Viljakainen A Vihavainen, Mol Biol Evol 2007 24 1340 1346 10.1093/molbev/msm055 17383971
    • (2007) Mol Biol Evol , vol.24 , pp. 1340-1346
    • Pamilo, P.1    Viljakainen, L.2    Vihavainen, A.3
  • 84
    • 10244240599 scopus 로고    scopus 로고
    • Automatic annotation of organellar genomes with DOGMA
    • 10.1093/bioinformatics/bth352. 15180927
    • Automatic annotation of organellar genomes with DOGMA. SK Wyman RK Jansen JL Boore, Bioinformatics 2004 20 3252 3255 10.1093/bioinformatics/bth352 15180927
    • (2004) Bioinformatics , vol.20 , pp. 3252-3255
    • Wyman, S.K.1    Jansen, R.K.2    Boore, J.L.3
  • 85
    • 38349180130 scopus 로고    scopus 로고
    • ARWEN: A program to detect tRNA genes in metazoan mitochondrial nucleotide sequences
    • 10.1093/bioinformatics/btm573. 18033792
    • ARWEN: a program to detect tRNA genes in metazoan mitochondrial nucleotide sequences. D Laslett B Canbäck, Bioinformatics 2008 24 172 175 10.1093/bioinformatics/btm573 18033792
    • (2008) Bioinformatics , vol.24 , pp. 172-175
    • Laslett, D.1    Canbäck, B.2
  • 86
    • 0030854739 scopus 로고    scopus 로고
    • TRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence
    • 10.1093/nar/25.5.955. 9023104
    • tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. TM Lowe SR Eddy, Nucleic Acids Res 1997 25 955 964 10.1093/nar/25.5.955 9023104
    • (1997) Nucleic Acids Res , vol.25 , pp. 955-964
    • Lowe, T.M.1    Eddy, S.R.2
  • 87
    • 0028272315 scopus 로고
    • RNA sequence analysis using covariance models
    • 10.1093/nar/22.11.2079. 8029015
    • RNA sequence analysis using covariance models. SR Eddy R Durbin, Nucleic Acids Res 1994 22 2079 2088 10.1093/nar/22.11.2079 8029015
    • (1994) Nucleic Acids Res , vol.22 , pp. 2079-2088
    • Eddy, S.R.1    Durbin, R.2
  • 88
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: Multiple sequence alignment with high accuracy and high throughput
    • 10.1093/nar/gkh340. 15034147
    • MUSCLE: multiple sequence alignment with high accuracy and high throughput. RC Edgar, Nucleic Acids Res 2004 32 1792 97 10.1093/nar/gkh340 15034147
    • (2004) Nucleic Acids Res , vol.32 , pp. 1792-97
    • Edgar, R.C.1
  • 89
    • 45849154165 scopus 로고    scopus 로고
    • JModeltest: Phylogenetic model averaging
    • 10.1093/molbev/msn083. 18397919
    • jModeltest: phylogenetic model averaging. D Posada, Mol Biol Evol 2008 25 1253 1256 10.1093/molbev/msn083 18397919
    • (2008) Mol Biol Evol , vol.25 , pp. 1253-1256
    • Posada, D.1
  • 90
    • 0347513220 scopus 로고    scopus 로고
    • DnaSP, DNA polymorphism analyses by the coalescent and other methods
    • 10.1093/bioinformatics/btg359. 14668244
    • DnaSP, DNA polymorphism analyses by the coalescent and other methods. J Rozas JC Snchez-DelBarrio X Messeguer R Rozas, Bioinformatics 2003 19 2496 2497 10.1093/bioinformatics/btg359 14668244
    • (2003) Bioinformatics , vol.19 , pp. 2496-2497
    • Rozas, J.1    Snchez-Delbarrio, J.C.2    Messeguer, X.3    Rozas, R.4
  • 91
    • 0027328291 scopus 로고
    • Chloroplast DNA codon use: Evidence for selection at the psb A locus based on tRNA availability
    • 10.1007/BF00175504. 8230251
    • Chloroplast DNA codon use: Evidence for selection at the psb A locus based on tRNA availability. BR Morton, J Mol Evol 1993 37 273 280 10.1007/BF00175504 8230251
    • (1993) J Mol Evol , vol.37 , pp. 273-280
    • Morton, B.R.1
  • 92
    • 0025318864 scopus 로고
    • The "effective number of codons" used in a gene
    • 10.1016/0378-1119(90)90491-9. 2110097
    • The "effective number of codons" used in a gene. F Wright, Gene 1990 87 23 29 10.1016/0378-1119(90)90491-9 2110097
    • (1990) Gene , vol.87 , pp. 23-29
    • Wright, F.1
  • 93
    • 0024116811 scopus 로고
    • "Silent" sites in Drosophila genes are not neutral: Evidence of selection among synonymous codons
    • 3146682
    • "Silent"sites in Drosophila genes are not neutral: Evidence of selection among synonymous codons. DC Shields PM Sharp DG Higgins F Wright, Mol Biol Evol 1988 5 704 716 3146682
    • (1988) Mol Biol Evol , vol.5 , pp. 704-716
    • Shields, D.C.1    Sharp, P.M.2    Higgins, D.G.3    Wright, F.4
  • 94
    • 34547803197 scopus 로고    scopus 로고
    • PAML 4: A program package for phylogenetic analysis by maximum likelihood
    • 10.1093/molbev/msm088. 17483113
    • PAML 4: a program package for phylogenetic analysis by maximum likelihood. Z Yang, Mol Biol Evol 2007 24 1586 1591 10.1093/molbev/msm088 17483113
    • (2007) Mol Biol Evol , vol.24 , pp. 1586-1591
    • Yang, Z.1
  • 95
    • 56449102033 scopus 로고    scopus 로고
    • Uncorrected nucleotide bias in mtDNA can mimic the effects of positive Darwinian selection
    • 10.1093/molbev/msn224. 18842686
    • Uncorrected nucleotide bias in mtDNA can mimic the effects of positive Darwinian selection. M Albu XJ Min D Hickey B Golding, Mol Biol Evol 2008 25 2521 2524 10.1093/molbev/msn224 18842686
    • (2008) Mol Biol Evol , vol.25 , pp. 2521-2524
    • Albu, M.1    Min, X.J.2    Hickey, D.3    Golding, B.4
  • 96
    • 58049218990 scopus 로고    scopus 로고
    • TOPALi v2: A rich graphical interface for evolutionary analyses of multiple alignments on HPC clusters and multi-core desktops
    • 10.1093/bioinformatics/btn575. 18984599
    • TOPALi v2: a rich graphical interface for evolutionary analyses of multiple alignments on HPC clusters and multi-core desktops. I Milne D Lindner M Bayer D Husmeier G McGuire DF Marshall F Wright, Bioinformatics 2009 25 126 127 10.1093/bioinformatics/btn575 18984599
    • (2009) Bioinformatics , vol.25 , pp. 126-127
    • Milne, I.1    Lindner, D.2    Bayer, M.3    Husmeier, D.4    McGuire, G.5    Marshall, D.F.6    Wright, F.7
  • 97
    • 13444251528 scopus 로고    scopus 로고
    • RDP2: Recombination detection and analysis from sequence alignments
    • 10.1093/bioinformatics/bth490. 15377507
    • RDP2: recombination detection and analysis from sequence alignments. DP Martin C Williamson D Posada, Bioinformatics 2005 21 260 262 10.1093/bioinformatics/bth490 15377507
    • (2005) Bioinformatics , vol.21 , pp. 260-262
    • Martin, D.P.1    Williamson, C.2    Posada, D.3
  • 98
    • 56549131066 scopus 로고    scopus 로고
    • Revealing the hidden complexities of mtDNA inheritance
    • 10.1111/j.1365-294X.2008.03982.x. 19120984
    • Revealing the hidden complexities of mtDNA inheritance. DJ White JN Wolff M Pierson NJ Gemmell, Mol Ecol 2008 17 4925 4942 10.1111/j.1365-294X.2008. 03982.x 19120984
    • (2008) Mol Ecol , vol.17 , pp. 4925-4942
    • White, D.J.1    Wolff, J.N.2    Pierson, M.3    Gemmell, N.J.4
  • 99
    • 0034849408 scopus 로고    scopus 로고
    • MRBAYES: Bayesian inference of phylogenetic trees
    • 10.1093/bioinformatics/17.8.754. 11524383
    • MRBAYES: Bayesian inference of phylogenetic trees. JP Huelsenbeck F Ronquist, Bioinformatics 2001 17 754 755 10.1093/bioinformatics/17.8.754 11524383
    • (2001) Bioinformatics , vol.17 , pp. 754-755
    • Huelsenbeck, J.P.1    Ronquist, F.2
  • 100
    • 0242578620 scopus 로고    scopus 로고
    • A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
    • 10.1080/10635150390235520. 14530136
    • A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. S Guindon O Gascuel, Syst Biol 2003 52 696 704 10.1080/10635150390235520 14530136
    • (2003) Syst Biol , vol.52 , pp. 696-704
    • Guindon, S.1    Gascuel, O.2
  • 101
    • 33745256005 scopus 로고    scopus 로고
    • Approximate Likelihood-Ratio Test for Branches: A Fast, Accurate, and Powerful Alternative
    • 10.1080/10635150600755453. 16785212
    • Approximate Likelihood-Ratio Test for Branches: A Fast, Accurate, and Powerful Alternative. M Anisimova O Gascuel, Syst Biol 2006 55 539 552 10.1080/10635150600755453 16785212
    • (2006) Syst Biol , vol.55 , pp. 539-552
    • Anisimova, M.1    Gascuel, O.2
  • 102
    • 38549135938 scopus 로고    scopus 로고
    • Alignment uncertainty and genomic analysis
    • 10.1126/science.1151532. 18218900
    • Alignment uncertainty and genomic analysis. KM Wong MA Suchard JP Huelsenbeck, Science 2008 319 473 476 10.1126/science.1151532 18218900
    • (2008) Science , vol.319 , pp. 473-476
    • Wong, K.M.1    Suchard, M.A.2    Huelsenbeck, J.P.3
  • 103
    • 0033824415 scopus 로고    scopus 로고
    • RDP: Detection of recombination amongst aligned sequences
    • 10.1093/bioinformatics/16.6.562. 10980155
    • RDP: detection of recombination amongst aligned sequences. D Martin E Rybicki, Bioinformatics 2000 16 562 563 10.1093/bioinformatics/16.6.562 10980155
    • (2000) Bioinformatics , vol.16 , pp. 562-563
    • Martin, D.1    Rybicki, E.2
  • 104
    • 0033590220 scopus 로고    scopus 로고
    • Possible emergence of new gemini viruses by frequent recombination
    • 10.1006/viro.1999.0056. 10600594
    • Possible emergence of new gemini viruses by frequent recombination. M Padidam S Sawyer CM Fauquet, Virology 1999 265 218 225 10.1006/viro.1999.0056 10600594
    • (1999) Virology , vol.265 , pp. 218-225
    • Padidam, M.1    Sawyer, S.2    Fauquet, C.M.3
  • 105
    • 13144283628 scopus 로고    scopus 로고
    • A modified bootscan algorithm for automated identification of recombinant sequences and recombination breakpoints
    • 10.1089/aid.2005.21.98. 15665649
    • A modified bootscan algorithm for automated identification of recombinant sequences and recombination breakpoints. DP Martin D Posada KA Crandall C Williamson, AIDS Res Hum Retroviruses 2005 21 98 102 10.1089/aid.2005.21.98 15665649
    • (2005) AIDS Res Hum Retroviruses , vol.21 , pp. 98-102
    • Martin, D.P.1    Posada, D.2    Crandall, K.A.3    Williamson, C.4
  • 106
    • 0026708873 scopus 로고
    • Analyzing the mosaic structure of genes
    • 1556748
    • Analyzing the mosaic structure of genes. J Maynard Smith, J Mol Evol 1992 34 126 129 1556748
    • (1992) J Mol Evol , vol.34 , pp. 126-129
    • Maynard Smith, J.1
  • 107
    • 0035923699 scopus 로고    scopus 로고
    • Evaluation of methods for detecting recombination from DNA sequences: Computer simulations
    • 10.1073/pnas.241370698. 11717435
    • Evaluation of methods for detecting recombination from DNA sequences: Computer simulations. D Posada KA Crandall, Proc Natl Acad Sci USA 2001 98 13757 13762 10.1073/pnas.241370698 11717435
    • (2001) Proc Natl Acad Sci USA , vol.98 , pp. 13757-13762
    • Posada, D.1    Crandall, K.A.2
  • 108
    • 0033753825 scopus 로고    scopus 로고
    • Sister-Scanning: A Monte Carlo procedure for assessing signals in recombinant sequences
    • 10.1093/bioinformatics/16.7.573. 11038328
    • Sister-Scanning: a Monte Carlo procedure for assessing signals in recombinant sequences. MJ Gibbs JS Armstrong AJ Gibbs, Bioinformatics 2000 16 573 582 10.1093/bioinformatics/16.7.573 11038328
    • (2000) Bioinformatics , vol.16 , pp. 573-582
    • Gibbs, M.J.1    Armstrong, J.S.2    Gibbs, A.J.3
  • 109
    • 34250757252 scopus 로고    scopus 로고
    • An exact nonparametric method for inferring mosaic structure in sequence triplets
    • 10.1534/genetics.106.068874. 17409078
    • An exact nonparametric method for inferring mosaic structure in sequence triplets. MF Boni D Posada MW Feldman, Genetics 2007 176 1035 1047 10.1534/genetics.106.068874 17409078
    • (2007) Genetics , vol.176 , pp. 1035-1047
    • Boni, M.F.1    Posada, D.2    Feldman, M.W.3
  • 110
    • 0031892518 scopus 로고    scopus 로고
    • Phylogenetic profiles: A graphical method for detecting genetic recombinations in homologous sequences
    • 9501499
    • Phylogenetic profiles: a graphical method for detecting genetic recombinations in homologous sequences. GF Weiller, Mol Biol Evol 1998 15 326 335 9501499
    • (1998) Mol Biol Evol , vol.15 , pp. 326-335
    • Weiller, G.F.1
  • 111
    • 0033021298 scopus 로고    scopus 로고
    • Phylogenetic evidence for recombination in dengue virus
    • 10331266
    • Phylogenetic evidence for recombination in dengue virus. EC Holmes M Worobey A Rambaut, Mol Biol Evol 1999 16 405 409 10331266
    • (1999) Mol Biol Evol , vol.16 , pp. 405-409
    • Holmes, E.C.1    Worobey, M.2    Rambaut, A.3
  • 112
    • 0034097468 scopus 로고    scopus 로고
    • TOPAL 2.0: Improved detection of mosaic sequences within multiple alignments
    • 10.1093/bioinformatics/16.2.130. 10842734
    • TOPAL 2.0: Improved detection of mosaic sequences within multiple alignments. G McGuire F Wright, Bioinformatics 2000 16 130 134 10.1093/bioinformatics/16.2.130 10842734
    • (2000) Bioinformatics , vol.16 , pp. 130-134
    • McGuire, G.1    Wright, F.2
  • 113
    • 0002459241 scopus 로고    scopus 로고
    • Probabilistic Divergence Measures for Detecting Interspecies Recombination
    • 11473001
    • Probabilistic Divergence Measures for Detecting Interspecies Recombination. D Husmeier F Wright, Bioinformatics 2001 17 Suppl 1 123 S131 11473001
    • (2001) Bioinformatics , vol.17 , Issue.SUPPL. 1
    • Husmeier, D.1    Wright, F.2
  • 114
    • 0037358827 scopus 로고    scopus 로고
    • Detecting Recombination in 4-Taxa DNA Sequence Alignments with Bayesian Hidden Markov Models and Markov Chain Monte Carlo
    • 10.1093/molbev/msg039. 12644553
    • Detecting Recombination in 4-Taxa DNA Sequence Alignments with Bayesian Hidden Markov Models and Markov Chain Monte Carlo. D Husmeier G McGuire, Mol Biol Evol 2003 20 315 337 10.1093/molbev/msg039 12644553
    • (2003) Mol Biol Evol , vol.20 , pp. 315-337
    • Husmeier, D.1    McGuire, G.2
  • 115
    • 0024356449 scopus 로고
    • Statistical tests for detecting gene conversion
    • 2677599
    • Statistical tests for detecting gene conversion. SA Sawyer, Mol Biol Evol 1989 6 526 538 2677599
    • (1989) Mol Biol Evol , vol.6 , pp. 526-538
    • Sawyer, S.A.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.