메뉴 건너뛰기




Volumn 23, Issue 8, 2013, Pages 1235-1247

Social insect genomes exhibit dramatic evolution in gene composition and regulation while preserving regulatory features linked to sociality

(38)  Simola, Daniel F a,q   Wissler, Lothar b,q   Donahue, Greg a   Waterhouse, Robert M c   Helmkampf, Martin d   Roux, Julien a,e   Nygaard, Sanne f   Glastad, Karl M g   Hagen, Darren E h,s   Viljakainen, Lumi i   Reese, Justin T h,r   Hunt, Brendan G g   Graur, Dan j   Elhaik, Eran k,l   Kriventseva, Evgenia V c   Wen, Jiayu f   Parker, Brian J f   Cash, Elizabeth d   Privman, Eyal e   Childers, Christopher P h,s   more..


Author keywords

[No Author keywords available]

Indexed keywords

ACYL COENZYME A DESATURASE; CYTOCHROME; GENOMIC DNA; SMALL UNTRANSLATED RNA; TRANSCRIPTION FACTOR; UNTRANSLATED RNA;

EID: 84881151042     PISSN: 10889051     EISSN: 15495469     Source Type: Journal    
DOI: 10.1101/gr.155408.113     Document Type: Article
Times cited : (202)

References (66)
  • 1
    • 0037067641 scopus 로고    scopus 로고
    • Evolution of the gene network underlying the wing polyphenism in ants
    • Abouheif E, Wray GA. 2002. Evolution of the gene network underlying the wing polyphenism in ants. Science 297: 249-252.
    • (2002) Science , vol.297 , pp. 249-252
    • Abouheif, E.1    Wray, G.A.2
  • 2
    • 21644470638 scopus 로고    scopus 로고
    • Creba regulates secretory activity in the drosophila salivary gland and epidermis
    • Abrams EW, Andrew DJ. 2005. CrebA regulates secretory activity in the Drosophila salivary gland and epidermis. Development 132: 2743-2758.
    • (2005) Development , vol.132 , pp. 2743-2758
    • Abrams, E.W.1    Andrew, D.J.2
  • 4
    • 84867397446 scopus 로고    scopus 로고
    • Genome-wide and caste-specificdna methylomes of the ants camponotus floridanus and harpegnathos saltator
    • Bonasio R, Li Q, Lian J, Mutti NS, Jin L, Zhao H, Zhang P, Wen P, Xiang H, Ding Y, et al. 2012.Genome-wide and caste-specificDNA methylomes of the ants Camponotus floridanus and Harpegnathos saltator. Curr Biol 22: 1755-1764.
    • (2012) Curr Biol , vol.22 , pp. 1755-1764
    • Bonasio, R.1    Li, Q.2    Lian, J.3    Mutti, N.S.4    Jin, L.5    Zhao, H.6    Zhang, P.7    Wen, P.8    Xiang, H.9    Ding, Y.10
  • 5
    • 79958764212 scopus 로고    scopus 로고
    • The antiquity and evolutionary history of social behavior in bees
    • Cardinal S, Danforth BN. 2011. The antiquity and evolutionary history of social behavior in bees. PLoS ONE 66: E21086.
    • (2011) PLoS ONE , vol.66
    • Cardinal, S.1    Danforth, B.N.2
  • 6
    • 0034043778 scopus 로고    scopus 로고
    • Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
    • Castresana J. 2000. Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol Biol Evol 17: 540-552.
    • (2000) Mol Biol Evol , vol.17 , pp. 540-552
    • Castresana, J.1
  • 7
    • 0025160625 scopus 로고
    • Mediation of drosophila head development by gap-like segmentation genes
    • Cohen SM, Jurgens G. 1990. Mediation of Drosophila head development by gap-like segmentation genes. Nature 346: 482-485.
    • (1990) Nature , vol.346 , pp. 482-485
    • Cohen, S.M.1    Jurgens, G.2
  • 8
    • 1342312355 scopus 로고    scopus 로고
    • Nervous wreck, an sh3 adaptor protein that interacts with wsp, regulates synaptic growth in drosophila
    • Coyle IP, Koh YH, Lee WCM, Slind J, Fergestad T, Littleton JT, Ganetzky B. 2004. Nervous wreck, an SH3 adaptor protein that interacts with Wsp, regulates synaptic growth in Drosophila. Neuron 41: 521-534.
    • (2004) Neuron , vol.41 , pp. 521-534
    • Coyle, I.P.1    Koh, Y.H.2    Lee, W.C.M.3    Slind, J.4    Fergestad, T.5    Littleton, J.T.6    Ganetzky, B.7
  • 10
    • 47149117454 scopus 로고    scopus 로고
    • Evolution of genes and genomes on the drosophila phylogeny
    • Genomes Consortium
    • Genomes Consortium. 2007. Evolution of genes and genomes on the Drosophila phylogeny. Nature 450: 203-218.
    • (2007) Nature , vol.450 , pp. 203-218
  • 11
    • 67650488920 scopus 로고    scopus 로고
    • Dna methylation is widespread and associated with differential gene expression in castes of the honeybee, apis mellifera
    • Elango B, Hunt BG, Goodisman MAD, Yi SV. 2009. DNA methylation is widespread and associated with differential gene expression in castes of the honeybee, Apis mellifera. Proc Natl Acad Sci 106: 11206-11211.
    • (2009) Proc Natl Acad Sci , vol.106 , pp. 11206-11211
    • Elango, B.1    Hunt, B.G.2    Goodisman, M.A.D.3    Yi, S.V.4
  • 13
    • 66749086453 scopus 로고    scopus 로고
    • Reduced biological control and enhanced chemical pest management in the evolution of fungus farming in ants
    • Fernández-Marín H, Zimmerman JK, Nash DR, Boomsma JJ, Wcislo WT. 2009. Reduced biological control and enhanced chemical pest management in the evolution of fungus farming in ants. Proc Biol Sci 276: 2263-2269.
    • (2009) Proc Biol Sci , vol.276 , pp. 2263-2269
    • Fernández-Marín, H.1    Zimmerman, J.K.2    Nash, D.R.3    Boomsma, J.J.4    Wcislo, W.T.5
  • 14
    • 84874214846 scopus 로고    scopus 로고
    • Transcriptome analyses of primitively eusocial wasps reveal novel insights into the evolution of sociality and the origin of alternative phenotypes
    • Ferreira PG, Patalano S, Chauhan R, Ffrench-Constant R, Gabaldon T, Guigo R, Sumner S. 2013. Transcriptome analyses of primitively eusocial wasps reveal novel insights into the evolution of sociality and the origin of alternative phenotypes. Genome Biol 14: R20.
    • (2013) Genome Biol , vol.14
    • Ferreira, P.G.1    Patalano, S.2    Chauhan, R.3    Ffrench-Constant, R.4    Gabaldon, T.5    Guigo, R.6    Sumner, S.7
  • 17
    • 0029842918 scopus 로고    scopus 로고
    • Age-dependent and taskrelated morphological changes in the brain and the mushroom bodies of the ant camponotus floridanus
    • Gronenberg W, Heeren S, Holldobler B. 1996. Age-dependent and taskrelated morphological changes in the brain and the mushroom bodies of the ant Camponotus floridanus. J Exp Biol 199: 2011-2019.
    • (1996) J Exp Biol , vol.199 , pp. 2011-2019
    • Gronenberg, W.1    Heeren, S.2    Holldobler, B.3
  • 18
    • 77950806408 scopus 로고    scopus 로고
    • New algorithms and methods to estimate maximum-likelihood phylogenies: Assessing the performance of phyml 3.0
    • Guindon S, Dufayard JF, Lefort V, Anisimova M, HordijkW, Gascuel O. 2010. New algorithms and methods to estimate maximum-likelihood phylogenies: Assessing the performance of PhyML 3.0. Syst Biol 59: 307-321.
    • (2010) Syst Biol , vol.59 , pp. 307-321
    • Guindon, S.1    Dufayard, J.F.2    Lefort, V.3    Anisimova, M.4    HordijkW Gascuel, O.5
  • 19
    • 36048950933 scopus 로고    scopus 로고
    • Gene family evolution across 12 drosophila genomes
    • Hahn MW, Han MV, Han SG. 2007. Gene family evolution across 12 Drosophila genomes. PLoS Genet 3: E197.
    • (2007) PLoS Genet , vol.3
    • Hahn, M.W.1    Han, M.V.2    Han, S.G.3
  • 21
    • 33750460281 scopus 로고    scopus 로고
    • Insights into social insects from the genome of the honeybee apis mellifera
    • The Honeybee Genome Sequencing Consortium
    • The Honeybee Genome Sequencing Consortium. 2006. Insights into social insects from the genome of the honeybee Apis mellifera. Nature 443: 931-949.
    • (2006) Nature , vol.443 , pp. 931-949
  • 22
    • 58549112996 scopus 로고    scopus 로고
    • Bioinformatics enrichment tools: Paths toward the comprehensive functional analysis of large gene lists
    • Huang DW, Sherman BT, Lempicki RA. 2009a. Bioinformatics enrichment tools: Paths toward the comprehensive functional analysis of large gene lists. Nucleic Acids Res 37: 1-13.
    • (2009) Nucleic Acids Res , vol.37 , pp. 1-13
    • Huang, D.W.1    Sherman, B.T.2    Lempicki, R.A.3
  • 23
    • 61449172037 scopus 로고    scopus 로고
    • Systematic and integrative analysis of large gene lists usingdavid bioinformatics resources
    • Huang DW, Sherman BT, Lempicki RA. 2009b. Systematic and integrative analysis of large gene lists usingDAVID Bioinformatics Resources. Nature Protoc 4: 44-57.
    • (2009) Nature Protoc , vol.4 , pp. 44-57
    • Huang, D.W.1    Sherman, B.T.2    Lempicki, R.A.3
  • 24
    • 65549140182 scopus 로고    scopus 로고
    • Ecdysone signaling regulates the formation of long-term courtship memory in adult drosophila melanogaster
    • Ishimoto H, Sakai T, Kitamoto T. 2009. Ecdysone signaling regulates the formation of long-term courtship memory in adult Drosophila melanogaster. Proc Natl Acad Sci 106: 6381-6386.
    • (2009) Proc Natl Acad Sci , vol.106 , pp. 6381-6386
    • Ishimoto, H.1    Sakai, T.2    Kitamoto, T.3
  • 25
    • 79953071614 scopus 로고    scopus 로고
    • Taxonomically restricted genes are associated with the evolution of sociality in the honey bee
    • Johnson BR, Tsutsui ND. 2011. Taxonomically restricted genes are associated with the evolution of sociality in the honey bee. BMC Genomics 12: 164.
    • (2011) BMC Genomics , vol.12 , pp. 164
    • Johnson, B.R.1    Tsutsui, N.D.2
  • 26
    • 79957613433 scopus 로고    scopus 로고
    • Royalactin induces queen differentiation in honeybees
    • Kamakura M. 2011. Royalactin induces queen differentiation in honeybees. Nature 473: 478-483.
    • (2011) Nature , vol.473 , pp. 478-483
    • Kamakura, M.1
  • 27
    • 0037100671 scopus 로고    scopus 로고
    • Mafft: A novel method for rapid multiple sequence alignment based on fast fourier transform
    • Katoh K, Misawa K, Kuma K, Miyata T. 2002. MAFFT: A novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Res 30: 3059-3066.
    • (2002) Nucleic Acids Res , vol.30 , pp. 3059-3066
    • Katoh, K.1    Misawa, K.2    Kuma, K.3    Miyata, T.4
  • 28
    • 69449089723 scopus 로고    scopus 로고
    • More than just orphans: Are taxonomically-restricted genes important in evolution?
    • Khalturin K, Hemmrich G, Fraune S, Augustin R, Bosch TC. 2009. More than just orphans: Are taxonomically-restricted genes important in evolution? Trends Genet 25: 404-413.
    • (2009) Trends Genet , vol.25 , pp. 404-413
    • Khalturin, K.1    Hemmrich, G.2    Fraune, S.3    Augustin, R.4    Bosch, T.C.5
  • 30
    • 79957868920 scopus 로고    scopus 로고
    • Bismark: A flexible aligner and methylation caller for bisulfite-seq applications
    • Krueger F, Andrews SR. 2011. Bismark: A flexible aligner and methylation caller for Bisulfite-Seq applications. Bioinformatics 27: 1571-1572.
    • (2011) Bioinformatics , vol.27 , pp. 1571-1572
    • Krueger, F.1    Andrews, S.R.2
  • 31
    • 41349085806 scopus 로고    scopus 로고
    • Nutritional control of reproductive status in honeybees via dna methylation
    • Kucharski R, Maleszka J, Foret S, Maleszka R. 2008. Nutritional control of reproductive status in honeybees via DNA methylation. Science 319: 1827-1830.
    • (2008) Science , vol.319 , pp. 1827-1830
    • Kucharski, R.1    Maleszka, J.2    Foret, S.3    Maleszka, R.4
  • 32
    • 69849099700 scopus 로고    scopus 로고
    • Motif discovery and motif finding from genome-mapped dnase footprint data
    • Kulakovskiy IV, Favorov AF, Makeev VJ. 2009. Motif discovery and motif finding from genome-mapped DNase footprint data. Bioinformatics 25: 2318-2325.
    • (2009) Bioinformatics , vol.25 , pp. 2318-2325
    • Kulakovskiy, I.V.1    Favorov, A.F.2    Makeev, V.J.3
  • 33
    • 62349130698 scopus 로고    scopus 로고
    • Ultrafast and memoryefficient alignment of short dna sequences to the human genome
    • Langmead B, Trapnell C, Pop M, Salzberg SL. 2009. Ultrafast and memoryefficient alignment of short DNA sequences to the human genome. Genome Biol 10: R25.
    • (2009) Genome Biol , vol.10
    • Langmead, B.1    Trapnell, C.2    Pop, M.3    Salzberg, S.L.4
  • 34
    • 0036707816 scopus 로고    scopus 로고
    • Identification of transcription factor binding sites in the human genome
    • Levy S, Hannenhalli S. 2002. Identification of transcription factor binding sites in the human genome. Mamm Genome 13: 510-514.
    • (2002) Mamm Genome , vol.13 , pp. 510-514
    • Levy, S.1    Hannenhalli, S.2
  • 35
    • 0038010034 scopus 로고    scopus 로고
    • Tissue-specific gene expression and ecdysoneregulated genomic networks in drosophila
    • Li T-R, White KP. 2003. Tissue-specific gene expression and ecdysoneregulated genomic networks in Drosophila. Dev Cell 5: 59-72.
    • (2003) Dev Cell , vol.5 , pp. 59-72
    • Li, T.-R.1    White, K.P.2
  • 38
    • 0028906816 scopus 로고
    • Silk gland factor-1 involved in the regulation of bombyx sericin-1 gene contains fork head motif
    • Mach V, Takiya S, Ohno K, Handa H, Imai T, Suzuki Y. 1995. Silk Gland Factor-1 involved in the regulation of Bombyx Sericin-1 gene contains Fork Head motif. J Biol Chem 270: 9340-9346.
    • (1995) J Biol Chem , vol.270 , pp. 9340-9346
    • Mach, V.1    Takiya, S.2    Ohno, K.3    Handa, H.4    Imai, T.5    Suzuki, Y.6
  • 39
    • 76149135364 scopus 로고    scopus 로고
    • A review of ant cuticular hydrocarbons
    • Martin S, Drijfhout F. 2009. A review of ant cuticular hydrocarbons. J Chem Ecol 35: 1151-1161.
    • (2009) J Chem Ecol , vol.35 , pp. 1151-1161
    • Martin, S.1    Drijfhout, F.2
  • 40
    • 0001714217 scopus 로고
    • Comparative social behavior of bees
    • Michener CD. 1969. Comparative social behavior of bees. Annu Rev Entomol 14: 299-342.
    • (1969) Annu Rev Entomol , vol.14 , pp. 299-342
    • Michener, C.D.1
  • 41
    • 33645665925 scopus 로고    scopus 로고
    • Phylogeny of the ants: Diversification in the age of angiosperms
    • Moreau CS, Bell CD, Vila R, Archibald SB, Pierce NE. 2006. Phylogeny of the ants: Diversification in the age of angiosperms. Science 312: 101-104.
    • (2006) Science , vol.312 , pp. 101-104
    • Moreau, C.S.1    Bell, C.D.2    Vila, R.3    Archibald, S.B.4    Pierce, N.E.5
  • 43
    • 80051559742 scopus 로고    scopus 로고
    • The genome of the leaf-cutting ant acromyrmex echinatior suggests key adaptations to advanced social life and fungus farming
    • Nygaard S, Zhang G, Schiott M, Li C, Wurm Y, Hu H, Zhou J, Ji L, Qiu F, Rasmussen M, et al. 2011. The genome of the leaf-cutting ant Acromyrmex echinatior suggests key adaptations to advanced social life and fungus farming. Genome Res 21: 1339-1348.
    • (2011) Genome Res , vol.21 , pp. 1339-1348
    • Nygaard, S.1    Zhang, G.2    Schiott, M.3    Li, C.4    Wurm, Y.5    Hu, H.6    Zhou, J.7    Ji, L.8    Qiu, F.9    Rasmussen, M.10
  • 44
    • 80054990557 scopus 로고    scopus 로고
    • New families of human regulatory rna structures identified by comparative analysis of vertebrate genomes
    • Parker BJ, Moltke I, Roth A,Washietl S,Wen J, Kellis M, Breaker R, Pedersen JS. 2011. New families of human regulatory RNA structures identified by comparative analysis of vertebrate genomes. Genome Res 21: 1929-1943.
    • (2011) Genome Res , vol.21 , pp. 1929-1943
    • Parker, B.J.1    Moltke, I.2    Roth, A.3    Washietl, S.4    Wen, J.5    Kellis, M.6    Breaker, R.7    Pedersen, J.S.8
  • 45
    • 78751474118 scopus 로고    scopus 로고
    • Non-coding rnas as regulators of embryogenesis
    • Pauli A, Rinn JL, Schier AF. 2011. Non-coding RNAs as regulators of embryogenesis. Nat Rev Genet 12: 136-149.
    • (2011) Nat Rev Genet , vol.12 , pp. 136-149
    • Pauli, A.1    Rinn, J.L.2    Schier, A.F.3
  • 48
    • 79959944339 scopus 로고    scopus 로고
    • Evolutionary origin of novel gene expression pattern through co-option of the latent activities of existing regulatory sequences
    • Rebeiz M, Jikomes N, Kassner VA, Carroll SB. 2011. Evolutionary origin of novel gene expression pattern through co-option of the latent activities of existing regulatory sequences. Proc Natl Acad Sci 108: 10036-10043.
    • (2011) Proc Natl Acad Sci , vol.108 , pp. 10036-10043
    • Rebeiz, M.1    Jikomes, N.2    Kassner, V.A.3    Carroll, S.B.4
  • 50
    • 44449117871 scopus 로고    scopus 로고
    • Major evolutionary transitions in ant agriculture
    • Schultz TR, Brady SG. 2008. Major evolutionary transitions in ant agriculture. Proc Natl Acad Sci 105: 5435-5440.
    • (2008) Proc Natl Acad Sci , vol.105 , pp. 5435-5440
    • Schultz, T.R.1    Brady, S.G.2
  • 54
    • 79952064941 scopus 로고    scopus 로고
    • Origin and evolution of the dependent lineages in the genetic caste determination system of pogonomyrmex spp
    • Sirvio A, Pamilo P, Johnson RA, Page RE Jr, Gadau J. 2011. Origin and evolution of the dependent lineages in the genetic caste determination system of Pogonomyrmex spp. Evolution 65: 869-884.
    • (2011) Evolution , vol.65 , pp. 869-884
    • Sirvio, A.1    Pamilo, P.2    Johnson, R.A.3    Page Jr., R.E.4    Gadau, J.5
  • 57
    • 84864552167 scopus 로고    scopus 로고
    • Patterns of dna methylation in development, division of labor and hybridization in an ant with genetic caste determination
    • Smith CR, Mutti NS, Jasper WC, Naidu A, Smith CD, Gadau J. 2012. Patterns of DNA methylation in development, division of labor and hybridization in an ant with genetic caste determination. PLoS ONE 78: E42433.
    • (2012) PLoS ONE , vol.78
    • Smith, C.R.1    Mutti, N.S.2    Jasper, W.C.3    Naidu, A.4    Smith, C.D.5    Gadau, J.6
  • 59
    • 1242352089 scopus 로고    scopus 로고
    • Temporal patterns of fruit fly drosophila evolution revealed by mutation clocks
    • Tamura K, Subramanian S, Kumar S. 2004. Temporal patterns of fruit fly Drosophila evolution revealed by mutation clocks. Mol Biol Evol 21: 36-44.
    • (2004) Mol Biol Evol , vol.21 , pp. 36-44
    • Tamura, K.1    Subramanian, S.2    Kumar, S.3
  • 60
    • 80052969570 scopus 로고    scopus 로고
    • The evolutionary origin of orphan genes
    • Tautz D, Domazet-Loso T. 2011. The evolutionary origin of orphan genes. Nat Rev Genet 12: 692-702.
    • (2011) Nat Rev Genet , vol.12 , pp. 692-702
    • Tautz, D.1    Domazet-Loso, T.2
  • 62
    • 77954160731 scopus 로고    scopus 로고
    • Blending of heritable recognition cues among ant nestmates creates distinct colony gestalt odours but prevents withincolony nepotism
    • van Zweden JS, Brask JB, Christensen JH, Boomsma JJ, Linksvayer TA, d'Ettorre P. 2010. Blending of heritable recognition cues among ant nestmates creates distinct colony gestalt odours but prevents withincolony nepotism. J Evol Biol 23: 1498-1508.
    • (2010) J Evol Biol , vol.23 , pp. 1498-1508
    • Van Zweden, J.S.1    Brask, J.B.2    Christensen, J.H.3    Boomsma, J.J.4    Linksvayer, T.A.5    D'Ettorre, P.6
  • 63
    • 0037036628 scopus 로고    scopus 로고
    • Identifying the transition between single and multiple mating of queens in fungusgrowing ants
    • Villesen P, Murakami T, Schultz TR, Boomsma JJ. 2009. Identifying the transition between single and multiple mating of queens in fungusgrowing ants. Proc Biol Sci 269: 1541-1548.
    • (2009) Proc Biol Sci , vol.269 , pp. 1541-1548
    • Villesen, P.1    Murakami, T.2    Schultz, T.R.3    Boomsma, J.J.4
  • 66
    • 84866174382 scopus 로고    scopus 로고
    • Phylogenetic and transcriptomic analysis of chemosensory receptors in a pair of divergent ant species reveals sex-specific signatures of odor coding
    • Zhou X, Slone JD, Rokas A, Berger SL, Liebig J, Ray A, Reinberg D, Zwiebel L. 2012. Phylogenetic and transcriptomic analysis of chemosensory receptors in a pair of divergent ant species reveals sex-specific signatures of odor coding. PLoS Genet 8: E1002930.
    • (2012) PLoS Genet , vol.8
    • Zhou, X.1    Slone, J.D.2    Rokas, A.3    Berger, S.L.4    Liebig, J.5    Ray, A.6    Reinberg, D.7    Zwiebel, L.8


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.