-
1
-
-
15744401773
-
Eukaryotic cytosine methyltransferases
-
Goll M.G., Bestor T.H. Eukaryotic cytosine methyltransferases. Annu Rev Biochem 2005, 74:481-514.
-
(2005)
Annu Rev Biochem
, vol.74
, pp. 481-514
-
-
Goll, M.G.1
Bestor, T.H.2
-
2
-
-
0034625064
-
Non-CpG methylation is prevalent in embryonic stem cells and may be mediated by DNA methyltransferase 3a
-
Ramsahoye B.H., Biniszkiewicz D., Lyko F., Clark V., Bird A.P., Jaenisch R. Non-CpG methylation is prevalent in embryonic stem cells and may be mediated by DNA methyltransferase 3a. Proc Natl Acad Sci U S A 2000, 97:5237-5242.
-
(2000)
Proc Natl Acad Sci U S A
, vol.97
, pp. 5237-5242
-
-
Ramsahoye, B.H.1
Biniszkiewicz, D.2
Lyko, F.3
Clark, V.4
Bird, A.P.5
Jaenisch, R.6
-
3
-
-
70450217879
-
Human DNA methylomes at base resolution show widespread epigenomic differences
-
Lister R., Pelizzola M., Dowen R.H., Hawkins R.D., Hon G., Tonti-Filippini J., Nery J.R., Lee L., Ye Z., Ngo Q.-M., et al. Human DNA methylomes at base resolution show widespread epigenomic differences. Nature 2009, 462:315-322.
-
(2009)
Nature
, vol.462
, pp. 315-322
-
-
Lister, R.1
Pelizzola, M.2
Dowen, R.H.3
Hawkins, R.D.4
Hon, G.5
Tonti-Filippini, J.6
Nery, J.R.7
Lee, L.8
Ye, Z.9
Ngo, Q.-M.10
-
4
-
-
84879663784
-
Global epigenomic reconfiguration during mammalian brain development
-
Lister R., Mukamel E.A., Nery J.R., Urich M., Puddifoot C.A., Johnson N.D., Lucero J., Huang Y., Dwork A.J., Schultz M.D., et al. Global epigenomic reconfiguration during mammalian brain development. Science 2013, 341. 1237905.
-
(2013)
Science
, vol.341
, pp. 1237905
-
-
Lister, R.1
Mukamel, E.A.2
Nery, J.R.3
Urich, M.4
Puddifoot, C.A.5
Johnson, N.D.6
Lucero, J.7
Huang, Y.8
Dwork, A.J.9
Schultz, M.D.10
-
5
-
-
36849072573
-
The SRA protein Np95 mediates epigenetic inheritance by recruiting Dnmt1 to methylated DNA
-
Sharif J., Muto M., Takebayashi S-I., Suetake I., Iwamatsu A., Endo T.A., Shinga J., Mizutani-Koseki Y., Toyoda T., Okamura K., et al. The SRA protein Np95 mediates epigenetic inheritance by recruiting Dnmt1 to methylated DNA. Nature 2007, 450:908-912.
-
(2007)
Nature
, vol.450
, pp. 908-912
-
-
Sharif, J.1
Muto, M.2
Takebayashi, S.-I.3
Suetake, I.4
Iwamatsu, A.5
Endo, T.A.6
Shinga, J.7
Mizutani-Koseki, Y.8
Toyoda, T.9
Okamura, K.10
-
6
-
-
0033615717
-
DNA methyltransferases Dnmt3a and Dnmt3b are essential for de novo methylation and mammalian development
-
Okano M., Bell D.W., Haber D.A., Li E. DNA methyltransferases Dnmt3a and Dnmt3b are essential for de novo methylation and mammalian development. Cell 1999, 99:247-257.
-
(1999)
Cell
, vol.99
, pp. 247-257
-
-
Okano, M.1
Bell, D.W.2
Haber, D.A.3
Li, E.4
-
7
-
-
0016439429
-
DNA modification mechanisms and gene activity during development
-
Holliday R., Pugh J.E. DNA modification mechanisms and gene activity during development. Science 1975, 187:226-232.
-
(1975)
Science
, vol.187
, pp. 226-232
-
-
Holliday, R.1
Pugh, J.E.2
-
8
-
-
0016692220
-
X inactivation, differentiation, and DNA methylation
-
Riggs A.D. X inactivation, differentiation, and DNA methylation. Cytogenet Cell Genet 1975, 14:9-25.
-
(1975)
Cytogenet Cell Genet
, vol.14
, pp. 9-25
-
-
Riggs, A.D.1
-
9
-
-
0026708177
-
Targeted mutation of the DNA methyltransferase gene results in embryonic lethality
-
Li E., Bestor T.H., Jaenisch R. Targeted mutation of the DNA methyltransferase gene results in embryonic lethality. Cell 1992, 69:915-926.
-
(1992)
Cell
, vol.69
, pp. 915-926
-
-
Li, E.1
Bestor, T.H.2
Jaenisch, R.3
-
10
-
-
0018860957
-
Cellular differentiation, cytidine analogs and DNA methylation
-
Jones P.A., Taylor S.M. Cellular differentiation, cytidine analogs and DNA methylation. Cell 1980, 20:85-93.
-
(1980)
Cell
, vol.20
, pp. 85-93
-
-
Jones, P.A.1
Taylor, S.M.2
-
11
-
-
0027378582
-
Role for DNA methylation in genomic imprinting
-
Li E., Beard C., Jaenisch R. Role for DNA methylation in genomic imprinting. Nature 1993, 366:362-365.
-
(1993)
Nature
, vol.366
, pp. 362-365
-
-
Li, E.1
Beard, C.2
Jaenisch, R.3
-
12
-
-
0029956442
-
DNA hypomethylation can activate Xist expression and silence X-linked genes
-
Panning B., Jaenisch R. DNA hypomethylation can activate Xist expression and silence X-linked genes. Genes Dev 1996, 10:1991-2002.
-
(1996)
Genes Dev
, vol.10
, pp. 1991-2002
-
-
Panning, B.1
Jaenisch, R.2
-
13
-
-
0031662164
-
Transcription of IAP endogenous retroviruses is constrained by cytosine methylation
-
Walsh C.P., Chaillet J.R., Bestor T.H. Transcription of IAP endogenous retroviruses is constrained by cytosine methylation. Nat Genet 1998, 20:116-117.
-
(1998)
Nat Genet
, vol.20
, pp. 116-117
-
-
Walsh, C.P.1
Chaillet, J.R.2
Bestor, T.H.3
-
14
-
-
84355163093
-
DNA-binding factors shape the mouse methylome at distal regulatory regions
-
Stadler M.B., Murr R., Burger L., Ivanek R., Lienert F., Schöler A., Wirbelauer C., Oakeley E.J., Gaidatzis D., Tiwari V.K., et al. DNA-binding factors shape the mouse methylome at distal regulatory regions. Nature 2011, 480:490-495.
-
(2011)
Nature
, vol.480
, pp. 490-495
-
-
Stadler, M.B.1
Murr, R.2
Burger, L.3
Ivanek, R.4
Lienert, F.5
Schöler, A.6
Wirbelauer, C.7
Oakeley, E.J.8
Gaidatzis, D.9
Tiwari, V.K.10
-
15
-
-
80052918929
-
Directional DNA methylation changes and complex intermediate states accompany lineage specificity in the adult hematopoietic compartment
-
Hodges E., Molaro A., Santos Dos C.O., Thekkat P., Song Q., Uren P.J., Park J., Butler J., Rafii S., McCombie W.R., et al. Directional DNA methylation changes and complex intermediate states accompany lineage specificity in the adult hematopoietic compartment. Mol Cell 2011, 44:17-28.
-
(2011)
Mol Cell
, vol.44
, pp. 17-28
-
-
Hodges, E.1
Molaro, A.2
Santos Dos, C.O.3
Thekkat, P.4
Song, Q.5
Uren, P.J.6
Park, J.7
Butler, J.8
Rafii, S.9
McCombie, W.R.10
-
16
-
-
84885021247
-
Epigenetic memory at embryonic enhancers identified in DNA methylation maps from adult mouse tissues
-
Hon G.C., Rajagopal N., Shen Y., McCleary D.F., Yue F., Dang M.D., Ren B. Epigenetic memory at embryonic enhancers identified in DNA methylation maps from adult mouse tissues. Nat Genet 2013, 45:1198-1206.
-
(2013)
Nat Genet
, vol.45
, pp. 1198-1206
-
-
Hon, G.C.1
Rajagopal, N.2
Shen, Y.3
McCleary, D.F.4
Yue, F.5
Dang, M.D.6
Ren, B.7
-
17
-
-
84882884517
-
Charting a dynamic DNA methylation landscape of the human genome
-
Ziller M.J., Gu H., Müller F., Donaghey J., Tsai L.T.Y., Kohlbacher O., De Jager P.L., Rosen E.D., Bennett D.A., Bernstein B.E., et al. Charting a dynamic DNA methylation landscape of the human genome. Nature 2013, 500:477-481.
-
(2013)
Nature
, vol.500
, pp. 477-481
-
-
Ziller, M.J.1
Gu, H.2
Müller, F.3
Donaghey, J.4
Tsai, L.T.Y.5
Kohlbacher, O.6
De Jager, P.L.7
Rosen, E.D.8
Bennett, D.A.9
Bernstein, B.E.10
-
18
-
-
62549128139
-
A census of human transcription factors: function, expression and evolution
-
Vaquerizas J.M., Kummerfeld S.K., Teichmann S.A., Luscombe N.M. A census of human transcription factors: function, expression and evolution. Nat Rev Genet 2009, 10:252-263.
-
(2009)
Nat Rev Genet
, vol.10
, pp. 252-263
-
-
Vaquerizas, J.M.1
Kummerfeld, S.K.2
Teichmann, S.A.3
Luscombe, N.M.4
-
19
-
-
0024673303
-
CpG methylation of the cAMP-responsive enhancer/promoter sequence TGACGTCA abolishes specific factor binding as well as transcriptional activation
-
Iguchi-Ariga S.M., Schaffner W. CpG methylation of the cAMP-responsive enhancer/promoter sequence TGACGTCA abolishes specific factor binding as well as transcriptional activation. Genes Dev 1989, 3:612-619.
-
(1989)
Genes Dev
, vol.3
, pp. 612-619
-
-
Iguchi-Ariga, S.M.1
Schaffner, W.2
-
21
-
-
0037322797
-
Methylation-sensitive binding of transcription factor YY1 to an insulator sequence within the paternally expressed imprinted gene, Peg3
-
Kim J., Kollhoff A., Bergmann A., Stubbs L. Methylation-sensitive binding of transcription factor YY1 to an insulator sequence within the paternally expressed imprinted gene, Peg3. Hum Mol Genet 2003, 12:233-245.
-
(2003)
Hum Mol Genet
, vol.12
, pp. 233-245
-
-
Kim, J.1
Kollhoff, A.2
Bergmann, A.3
Stubbs, L.4
-
22
-
-
0024121584
-
Cytosine methylation does not affect binding of transcription factor Sp1
-
Harrington M.A., Jones P.A., Imagawa M., Karin M. Cytosine methylation does not affect binding of transcription factor Sp1. Proc Natl Acad Sci U S A 1988, 85:2066-2070.
-
(1988)
Proc Natl Acad Sci U S A
, vol.85
, pp. 2066-2070
-
-
Harrington, M.A.1
Jones, P.A.2
Imagawa, M.3
Karin, M.4
-
23
-
-
0027535235
-
Effects of DNA methylation on DNA-binding proteins and gene expression
-
Tate P.H., Bird A.P. Effects of DNA methylation on DNA-binding proteins and gene expression. Curr Opin Genet Dev 1993, 3:226-231.
-
(1993)
Curr Opin Genet Dev
, vol.3
, pp. 226-231
-
-
Tate, P.H.1
Bird, A.P.2
-
24
-
-
84874771985
-
Dynamic readers for 5-(hydroxy)methylcytosine and its oxidized derivatives
-
Spruijt C.G., Gnerlich F., Smits A.H., Pfaffeneder T., Jansen P.W.T.C., Bauer C., Münzel M., Wagner M., Müller M., Khan F., et al. Dynamic readers for 5-(hydroxy)methylcytosine and its oxidized derivatives. Cell 2013, 152:1146-1159.
-
(2013)
Cell
, vol.152
, pp. 1146-1159
-
-
Spruijt, C.G.1
Gnerlich, F.2
Smits, A.H.3
Pfaffeneder, T.4
Jansen, P.W.T.C.5
Bauer, C.6
Münzel, M.7
Wagner, M.8
Müller, M.9
Khan, F.10
-
25
-
-
84884692057
-
DNA methylation presents distinct binding sites for human transcription factors
-
e00726
-
Hu S., Wan J., Su Y., Song Q., Zeng Y., Nguyen H.N., Shin J., Cox E., Rho H.S., Woodard C., et al. DNA methylation presents distinct binding sites for human transcription factors. eLife 2013, 2. e00726.
-
(2013)
eLife
, vol.2
-
-
Hu, S.1
Wan, J.2
Su, Y.3
Song, Q.4
Zeng, Y.5
Nguyen, H.N.6
Shin, J.7
Cox, E.8
Rho, H.S.9
Woodard, C.10
-
26
-
-
0024342686
-
Identification of a mammalian protein that binds specifically to DNA containing methylated CpGs
-
Meehan R.R., Lewis J.D., McKay S., Kleiner E.L., Bird A.P. Identification of a mammalian protein that binds specifically to DNA containing methylated CpGs. Cell 1989, 58:499-507.
-
(1989)
Cell
, vol.58
, pp. 499-507
-
-
Meehan, R.R.1
Lewis, J.D.2
McKay, S.3
Kleiner, E.L.4
Bird, A.P.5
-
27
-
-
0031792779
-
Identification and characterization of a family of mammalian methyl-CpG binding proteins
-
Hendrich B., Bird A. Identification and characterization of a family of mammalian methyl-CpG binding proteins. Mol Cell Biol 1998, 18:6538-6547.
-
(1998)
Mol Cell Biol
, vol.18
, pp. 6538-6547
-
-
Hendrich, B.1
Bird, A.2
-
28
-
-
0036241916
-
Molecular mechanisms of gene silencing mediated by DNA methylation
-
Curradi M., Izzo A., Badaracco G., Landsberger N. Molecular mechanisms of gene silencing mediated by DNA methylation. Mol Cell Biol 2002, 22:3157-3173.
-
(2002)
Mol Cell Biol
, vol.22
, pp. 3157-3173
-
-
Curradi, M.1
Izzo, A.2
Badaracco, G.3
Landsberger, N.4
-
29
-
-
0032574977
-
Transcriptional repression by the methyl-CpG-binding protein MeCP2 involves a histone deacetylase complex
-
Nan X., Ng H.H., Johnson C.A., Laherty C.D., Turner B.M., Eisenman R.N., Bird A. Transcriptional repression by the methyl-CpG-binding protein MeCP2 involves a histone deacetylase complex. Nature 1998, 393:386-389.
-
(1998)
Nature
, vol.393
, pp. 386-389
-
-
Nan, X.1
Ng, H.H.2
Johnson, C.A.3
Laherty, C.D.4
Turner, B.M.5
Eisenman, R.N.6
Bird, A.7
-
30
-
-
0031837109
-
Methylated DNA and MeCP2 recruit histone deacetylase to repress transcription
-
Jones P.L., Veenstra G.J., Wade P.A., Vermaak D., Kass S.U., Landsberger N., Strouboulis J., Wolffe A.P. Methylated DNA and MeCP2 recruit histone deacetylase to repress transcription. Nat Genet 1998, 19:187-191.
-
(1998)
Nat Genet
, vol.19
, pp. 187-191
-
-
Jones, P.L.1
Veenstra, G.J.2
Wade, P.A.3
Vermaak, D.4
Kass, S.U.5
Landsberger, N.6
Strouboulis, J.7
Wolffe, A.P.8
-
31
-
-
0033180082
-
Analysis of the NuRD subunits reveals a histone deacetylase core complex and a connection with DNA methylation
-
Zhang Y., Ng H.H., Erdjument-Bromage H., Tempst P., Bird A., Reinberg D. Analysis of the NuRD subunits reveals a histone deacetylase core complex and a connection with DNA methylation. Genes Dev 1999, 13:1924-1935.
-
(1999)
Genes Dev
, vol.13
, pp. 1924-1935
-
-
Zhang, Y.1
Ng, H.H.2
Erdjument-Bromage, H.3
Tempst, P.4
Bird, A.5
Reinberg, D.6
-
32
-
-
0032871399
-
MBD2 is a transcriptional repressor belonging to the MeCP1 histone deacetylase complex
-
Ng H.H., Zhang Y., Hendrich B., Johnson C.A., Turner B.M., Erdjument-Bromage H., Tempst P., Reinberg D., Bird A. MBD2 is a transcriptional repressor belonging to the MeCP1 histone deacetylase complex. Nat Genet 1999, 23:58-61.
-
(1999)
Nat Genet
, vol.23
, pp. 58-61
-
-
Ng, H.H.1
Zhang, Y.2
Hendrich, B.3
Johnson, C.A.4
Turner, B.M.5
Erdjument-Bromage, H.6
Tempst, P.7
Reinberg, D.8
Bird, A.9
-
33
-
-
0026583975
-
Repression of genes by DNA methylation depends on CpG density and promoter strength: evidence for involvement of a methyl-CpG binding protein
-
Boyes J., Bird A. Repression of genes by DNA methylation depends on CpG density and promoter strength: evidence for involvement of a methyl-CpG binding protein. EMBO J 1992, 11:327-333.
-
(1992)
EMBO J
, vol.11
, pp. 327-333
-
-
Boyes, J.1
Bird, A.2
-
34
-
-
34047116826
-
Distribution, silencing potential and evolutionary impact of promoter DNA methylation in the human genome
-
Weber M., Hellmann I., Stadler M.B., Ramos L., Pääbo S., Rebhan M., Schübeler D. Distribution, silencing potential and evolutionary impact of promoter DNA methylation in the human genome. Nat Genet 2007, 39:457-466.
-
(2007)
Nat Genet
, vol.39
, pp. 457-466
-
-
Weber, M.1
Hellmann, I.2
Stadler, M.B.3
Ramos, L.4
Pääbo, S.5
Rebhan, M.6
Schübeler, D.7
-
35
-
-
0027960055
-
Sp1 sites in the mouse aprt gene promoter are required to prevent methylation of the CpG island
-
Macleod D., Charlton J., Mullins J., Bird A.P. Sp1 sites in the mouse aprt gene promoter are required to prevent methylation of the CpG island. Genes Dev 1994, 8:2282-2292.
-
(1994)
Genes Dev
, vol.8
, pp. 2282-2292
-
-
Macleod, D.1
Charlton, J.2
Mullins, J.3
Bird, A.P.4
-
36
-
-
0028104109
-
Sp1 elements protect a CpG island from de novo methylation
-
Brandeis M., Frank D., Keshet I., Siegfried Z., Mendelsohn M., Nemes A., Temper V., Razin A., Cedar H. Sp1 elements protect a CpG island from de novo methylation. Nature 1994, 371:435-438.
-
(1994)
Nature
, vol.371
, pp. 435-438
-
-
Brandeis, M.1
Frank, D.2
Keshet, I.3
Siegfried, Z.4
Mendelsohn, M.5
Nemes, A.6
Temper, V.7
Razin, A.8
Cedar, H.9
-
37
-
-
0032992224
-
DNA methylation represses transcription in vivo
-
Siegfried Z., Eden S., Mendelsohn M., Feng X., Tsuberi B.Z., Cedar H. DNA methylation represses transcription in vivo. Nat Genet 1999, 22:203-206.
-
(1999)
Nat Genet
, vol.22
, pp. 203-206
-
-
Siegfried, Z.1
Eden, S.2
Mendelsohn, M.3
Feng, X.4
Tsuberi, B.Z.5
Cedar, H.6
-
38
-
-
80054994283
-
Identification of genetic elements that autonomously determine DNA methylation states
-
Lienert F., Wirbelauer C., Som I., Dean A., Mohn F., Schübeler D. Identification of genetic elements that autonomously determine DNA methylation states. Nat Genet 2011, 43:1091-1097.
-
(2011)
Nat Genet
, vol.43
, pp. 1091-1097
-
-
Lienert, F.1
Wirbelauer, C.2
Som, I.3
Dean, A.4
Mohn, F.5
Schübeler, D.6
-
39
-
-
79961022522
-
DNA methylation status predicts cell type-specific enhancer activity
-
Wiench M., John S., Baek S., Johnson T.A., Sung M-H., Escobar T., Simmons C.A., Pearce K.H., Biddie S.C., Sabo P.J., et al. DNA methylation status predicts cell type-specific enhancer activity. EMBO J 2011, 30:3028-3039.
-
(2011)
EMBO J
, vol.30
, pp. 3028-3039
-
-
Wiench, M.1
John, S.2
Baek, S.3
Johnson, T.A.4
Sung, M.-H.5
Escobar, T.6
Simmons, C.A.7
Pearce, K.H.8
Biddie, S.C.9
Sabo, P.J.10
-
41
-
-
84872522528
-
Latent enhancers activated by stimulation in differentiated cells
-
Ostuni R., Piccolo V., Barozzi I., Polletti S., Termanini A., Bonifacio S., Curina A., Prosperini E., Ghisletti S., Natoli G. Latent enhancers activated by stimulation in differentiated cells. Cell 2013, 152:157-171.
-
(2013)
Cell
, vol.152
, pp. 157-171
-
-
Ostuni, R.1
Piccolo, V.2
Barozzi, I.3
Polletti, S.4
Termanini, A.5
Bonifacio, S.6
Curina, A.7
Prosperini, E.8
Ghisletti, S.9
Natoli, G.10
-
42
-
-
59149084538
-
The human colon cancer methylome shows similar hypo- and hypermethylation at conserved tissue-specific CpG island shores
-
Irizarry R.A., Ladd-Acosta C., Wen B., Wu Z., Montano C., Onyango P., Cui H., Gabo K., Rongione M., Webster M., et al. The human colon cancer methylome shows similar hypo- and hypermethylation at conserved tissue-specific CpG island shores. Nat Genet 2009, 41:178-186.
-
(2009)
Nat Genet
, vol.41
, pp. 178-186
-
-
Irizarry, R.A.1
Ladd-Acosta, C.2
Wen, B.3
Wu, Z.4
Montano, C.5
Onyango, P.6
Cui, H.7
Gabo, K.8
Rongione, M.9
Webster, M.10
-
43
-
-
66149123748
-
The nuclear DNA base 5-hydroxymethylcytosine is present in Purkinje neurons and the brain
-
Kriaucionis S., Heintz N. The nuclear DNA base 5-hydroxymethylcytosine is present in Purkinje neurons and the brain. Science 2009, 324:929-930.
-
(2009)
Science
, vol.324
, pp. 929-930
-
-
Kriaucionis, S.1
Heintz, N.2
-
44
-
-
66149146320
-
Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1
-
Tahiliani M., Koh K.P., Shen Y., Pastor W.A., Bandukwala H., Brudno Y., Agarwal S., Iyer L.M., Liu D.R., Aravind L., et al. Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1. Science 2009, 324:930-935.
-
(2009)
Science
, vol.324
, pp. 930-935
-
-
Tahiliani, M.1
Koh, K.P.2
Shen, Y.3
Pastor, W.A.4
Bandukwala, H.5
Brudno, Y.6
Agarwal, S.7
Iyer, L.M.8
Liu, D.R.9
Aravind, L.10
-
45
-
-
79959209733
-
5-Hydroxymethylcytosine is associated with enhancers and gene bodies in human embryonic stem cells
-
Stroud H., Feng S., Morey Kinney S., Pradhan S., Jacobsen S.E. 5-Hydroxymethylcytosine is associated with enhancers and gene bodies in human embryonic stem cells. Genome Biol 2011, 12:R54.
-
(2011)
Genome Biol
, vol.12
-
-
Stroud, H.1
Feng, S.2
Morey Kinney, S.3
Pradhan, S.4
Jacobsen, S.E.5
-
46
-
-
79959859654
-
Integrating 5-hydroxymethylcytosine into the epigenomic landscape of human embryonic stem cells
-
Szulwach K.E., Li X., Li Y., Song C-X., Han J.W., Kim S., Namburi S., Hermetz K., Kim J.J., Rudd M.K., et al. Integrating 5-hydroxymethylcytosine into the epigenomic landscape of human embryonic stem cells. PLoS Genet 2011, 7:e1002154.
-
(2011)
PLoS Genet
, vol.7
-
-
Szulwach, K.E.1
Li, X.2
Li, Y.3
Song, C.-X.4
Han, J.W.5
Kim, S.6
Namburi, S.7
Hermetz, K.8
Kim, J.J.9
Rudd, M.K.10
-
47
-
-
79956330964
-
CpG islands and the regulation of transcription
-
Deaton A.M., Bird A. CpG islands and the regulation of transcription. Genes Dev 2011, 25:1010-1022.
-
(2011)
Genes Dev
, vol.25
, pp. 1010-1022
-
-
Deaton, A.M.1
Bird, A.2
-
48
-
-
34547725157
-
DNMT3L connects unmethylated lysine 4 of histone H3 to de novo methylation of DNA
-
Ooi S.K.T., Qiu C., Bernstein E., Li K., Jia D., Yang Z., Erdjument-Bromage H., Tempst P., Lin S-P., Allis C.D., et al. DNMT3L connects unmethylated lysine 4 of histone H3 to de novo methylation of DNA. Nature 2007, 448:714-717.
-
(2007)
Nature
, vol.448
, pp. 714-717
-
-
Ooi, S.K.T.1
Qiu, C.2
Bernstein, E.3
Li, K.4
Jia, D.5
Yang, Z.6
Erdjument-Bromage, H.7
Tempst, P.8
Lin, S.-P.9
Allis, C.D.10
-
49
-
-
70449099301
-
Structural basis for recognition of H3K4 methylation status by the DNA methyltransferase 3A ATRX-DNMT3-DNMT3L domain
-
Otani J., Nankumo T., Arita K., Inamoto S., Ariyoshi M., Shirakawa M. Structural basis for recognition of H3K4 methylation status by the DNA methyltransferase 3A ATRX-DNMT3-DNMT3L domain. EMBO Rep 2009, 10:1235-1241.
-
(2009)
EMBO Rep
, vol.10
, pp. 1235-1241
-
-
Otani, J.1
Nankumo, T.2
Arita, K.3
Inamoto, S.4
Ariyoshi, M.5
Shirakawa, M.6
-
50
-
-
77951116072
-
CpG islands influence chromatin structure via the CpG-binding protein Cfp1
-
Thomson J.P., Skene P.J., Selfridge J., Clouaire T., Guy J., Webb S., Kerr A.R.W., Deaton A., Andrews R., James K.D., et al. CpG islands influence chromatin structure via the CpG-binding protein Cfp1. Nature 2010, 464:1082-1086.
-
(2010)
Nature
, vol.464
, pp. 1082-1086
-
-
Thomson, J.P.1
Skene, P.J.2
Selfridge, J.3
Clouaire, T.4
Guy, J.5
Webb, S.6
Kerr, A.R.W.7
Deaton, A.8
Andrews, R.9
James, K.D.10
-
51
-
-
84878292464
-
ZF-CxxC domain-containing proteins, CpG islands and the chromatin connection
-
Long H.K., Blackledge N.P., Klose R.J. ZF-CxxC domain-containing proteins, CpG islands and the chromatin connection. Biochem Soc Trans 2013, 41:727-740.
-
(2013)
Biochem Soc Trans
, vol.41
, pp. 727-740
-
-
Long, H.K.1
Blackledge, N.P.2
Klose, R.J.3
-
52
-
-
84878260646
-
TETonic shift: biological roles of TET proteins in DNA demethylation and transcription
-
Pastor W.A., Aravind L., Rao A. TETonic shift: biological roles of TET proteins in DNA demethylation and transcription. Nat Rev Mol Cell Biol 2013, 14:341-356.
-
(2013)
Nat Rev Mol Cell Biol
, vol.14
, pp. 341-356
-
-
Pastor, W.A.1
Aravind, L.2
Rao, A.3
-
53
-
-
67650095160
-
CXXC finger protein 1 contains redundant functional domains that support embryonic stem cell cytosine methylation, histone methylation, and differentiation
-
Tate C.M., Lee J.H., Skalnik D.G. CXXC finger protein 1 contains redundant functional domains that support embryonic stem cell cytosine methylation, histone methylation, and differentiation. Mol Cell Biol 2009, 29:3817-3831.
-
(2009)
Mol Cell Biol
, vol.29
, pp. 3817-3831
-
-
Tate, C.M.1
Lee, J.H.2
Skalnik, D.G.3
-
54
-
-
84864752375
-
Cfp1 integrates both CpG content and gene activity for accurate H3K4me3 deposition in embryonic stem cells
-
Clouaire T., Webb S., Skene P., Illingworth R., Kerr A., Andrews R., Lee J.H., Skalnik D., Bird A. Cfp1 integrates both CpG content and gene activity for accurate H3K4me3 deposition in embryonic stem cells. Genes Dev 2012, 26:1714-1728.
-
(2012)
Genes Dev
, vol.26
, pp. 1714-1728
-
-
Clouaire, T.1
Webb, S.2
Skene, P.3
Illingworth, R.4
Kerr, A.5
Andrews, R.6
Lee, J.H.7
Skalnik, D.8
Bird, A.9
-
55
-
-
84873707539
-
Combined deficiency of Tet1 and Tet2 causes epigenetic abnormalities but is compatible with postnatal development
-
Dawlaty M.M., Breiling A., Le T., Raddatz G., Barrasa M.I., Cheng A.W., Gao Q., Powell B.E., Li Z., Xu M., et al. Combined deficiency of Tet1 and Tet2 causes epigenetic abnormalities but is compatible with postnatal development. Dev Cell 2013, 24:310-323.
-
(2013)
Dev Cell
, vol.24
, pp. 310-323
-
-
Dawlaty, M.M.1
Breiling, A.2
Le, T.3
Raddatz, G.4
Barrasa, M.I.5
Cheng, A.W.6
Gao, Q.7
Powell, B.E.8
Li, Z.9
Xu, M.10
-
56
-
-
70350069495
-
The presence of RNA polymerase II, active or stalled, predicts epigenetic fate of promoter CpG islands
-
Takeshima H., Yamashita S., Shimazu T., Niwa T., Ushijima T. The presence of RNA polymerase II, active or stalled, predicts epigenetic fate of promoter CpG islands. Genome Res 2009, 19:1974-1982.
-
(2009)
Genome Res
, vol.19
, pp. 1974-1982
-
-
Takeshima, H.1
Yamashita, S.2
Shimazu, T.3
Niwa, T.4
Ushijima, T.5
-
57
-
-
84859087611
-
R-loop formation is a distinctive characteristic of unmethylated human CpG island promoters
-
Ginno P.A., Lott P.L., Christensen H.C., Korf I., Chédin F. R-loop formation is a distinctive characteristic of unmethylated human CpG island promoters. Mol Cell 2012, 45:814-825.
-
(2012)
Mol Cell
, vol.45
, pp. 814-825
-
-
Ginno, P.A.1
Lott, P.L.2
Christensen, H.C.3
Korf, I.4
Chédin, F.5
-
58
-
-
38649126918
-
Promoter CpG methylation contributes to ES cell gene regulation in parallel with Oct4/Nanog, PcG complex, and histone H3 K4/K27 trimethylation
-
Fouse S.D., Shen Y., Pellegrini M., Cole S., Meissner A., Van Neste L., Jaenisch R., Fan G. Promoter CpG methylation contributes to ES cell gene regulation in parallel with Oct4/Nanog, PcG complex, and histone H3 K4/K27 trimethylation. Cell Stem Cell 2008, 2:160-169.
-
(2008)
Cell Stem Cell
, vol.2
, pp. 160-169
-
-
Fouse, S.D.1
Shen, Y.2
Pellegrini, M.3
Cole, S.4
Meissner, A.5
Van Neste, L.6
Jaenisch, R.7
Fan, G.8
-
59
-
-
77957824513
-
DNA methylation is dispensable for the growth and survival of the extraembryonic lineages
-
Sakaue M., Ohta H., Kumaki Y., Oda M., Sakaide Y., Matsuoka C., Yamagiwa A., Niwa H., Wakayama T., Okano M. DNA methylation is dispensable for the growth and survival of the extraembryonic lineages. Curr Biol 2010, 20:1452-1457.
-
(2010)
Curr Biol
, vol.20
, pp. 1452-1457
-
-
Sakaue, M.1
Ohta, H.2
Kumaki, Y.3
Oda, M.4
Sakaide, Y.5
Matsuoka, C.6
Yamagiwa, A.7
Niwa, H.8
Wakayama, T.9
Okano, M.10
-
60
-
-
77952695371
-
Dnmt3b recruitment through E2F6 transcriptional repressor mediates germ-line gene silencing in murine somatic tissues
-
Velasco G., Hubé F., Rollin J., Neuillet D., Philippe C., Bouzinba-Segard H., Galvani A., Viegas-Péquignot E., Francastel C. Dnmt3b recruitment through E2F6 transcriptional repressor mediates germ-line gene silencing in murine somatic tissues. Proc Natl Acad Sci U S A 2010, 107:9281-9286.
-
(2010)
Proc Natl Acad Sci U S A
, vol.107
, pp. 9281-9286
-
-
Velasco, G.1
Hubé, F.2
Rollin, J.3
Neuillet, D.4
Philippe, C.5
Bouzinba-Segard, H.6
Galvani, A.7
Viegas-Péquignot, E.8
Francastel, C.9
-
61
-
-
84865843074
-
Promoter DNA methylation couples genome-defence mechanisms to epigenetic reprogramming in the mouse germline
-
Hackett J.A., Reddington J.P., Nestor C.E., Dunican D.S., Branco M.R., Reichmann J., Reik W., Surani M.A., Adams I.R., Meehan R.R. Promoter DNA methylation couples genome-defence mechanisms to epigenetic reprogramming in the mouse germline. Development 2012, 139:3623-3632.
-
(2012)
Development
, vol.139
, pp. 3623-3632
-
-
Hackett, J.A.1
Reddington, J.P.2
Nestor, C.E.3
Dunican, D.S.4
Branco, M.R.5
Reichmann, J.6
Reik, W.7
Surani, M.A.8
Adams, I.R.9
Meehan, R.R.10
-
62
-
-
84876278080
-
Methylation-dependent and -independent genomic targeting principles of the MBD protein family
-
Baubec T., Ivanek R., Lienert F., Schübeler D. Methylation-dependent and -independent genomic targeting principles of the MBD protein family. Cell 2013, 153:480-492.
-
(2013)
Cell
, vol.153
, pp. 480-492
-
-
Baubec, T.1
Ivanek, R.2
Lienert, F.3
Schübeler, D.4
-
63
-
-
0035868824
-
Closely related proteins MBD2 and MBD3 play distinctive but interacting roles in mouse development
-
Hendrich B., Guy J., Ramsahoye B., Wilson V.A., Bird A. Closely related proteins MBD2 and MBD3 play distinctive but interacting roles in mouse development. Genes Dev 2001, 15:710-723.
-
(2001)
Genes Dev
, vol.15
, pp. 710-723
-
-
Hendrich, B.1
Guy, J.2
Ramsahoye, B.3
Wilson, V.A.4
Bird, A.5
-
64
-
-
0037180492
-
Transcriptional profiling of a mouse model for Rett syndrome reveals subtle transcriptional changes in the brain
-
Tudor M., Akbarian S., Chen R.Z., Jaenisch R. Transcriptional profiling of a mouse model for Rett syndrome reveals subtle transcriptional changes in the brain. Proc Natl Acad Sci U S A 2002, 99:15536-15541.
-
(2002)
Proc Natl Acad Sci U S A
, vol.99
, pp. 15536-15541
-
-
Tudor, M.1
Akbarian, S.2
Chen, R.Z.3
Jaenisch, R.4
-
65
-
-
0037636512
-
Mice lacking methyl-CpG binding protein 1 have deficits in adult neurogenesis and hippocampal function
-
Zhao X., Ueba T., Christie B.R., Barkho B., McConnell M.J., Nakashima K., Lein E.S., Eadie B.D., Willhoite A.R., Muotri A.R., et al. Mice lacking methyl-CpG binding protein 1 have deficits in adult neurogenesis and hippocampal function. Proc Natl Acad Sci U S A 2003, 100:6777-6782.
-
(2003)
Proc Natl Acad Sci U S A
, vol.100
, pp. 6777-6782
-
-
Zhao, X.1
Ueba, T.2
Christie, B.R.3
Barkho, B.4
McConnell, M.J.5
Nakashima, K.6
Lein, E.S.7
Eadie, B.D.8
Willhoite, A.R.9
Muotri, A.R.10
-
66
-
-
59849121326
-
The methyl-CpG binding proteins Mecp2, Mbd2 and Kaiso are dispensable for mouse embryogenesis, but play a redundant function in neural differentiation
-
Martín Caballero I., Hansen J., Leaford D., Pollard S., Hendrich B.D. The methyl-CpG binding proteins Mecp2, Mbd2 and Kaiso are dispensable for mouse embryogenesis, but play a redundant function in neural differentiation. PLoS ONE 2009, 4:e4315.
-
(2009)
PLoS ONE
, vol.4
-
-
Martín Caballero, I.1
Hansen, J.2
Leaford, D.3
Pollard, S.4
Hendrich, B.D.5
-
67
-
-
0342437491
-
MeCP2 is a transcriptional repressor with abundant binding sites in genomic chromatin
-
Nan X., Campoy F.J., Bird A. MeCP2 is a transcriptional repressor with abundant binding sites in genomic chromatin. Cell 1997, 88:471-481.
-
(1997)
Cell
, vol.88
, pp. 471-481
-
-
Nan, X.1
Campoy, F.J.2
Bird, A.3
-
68
-
-
84860647928
-
NuRD suppresses pluripotency gene expression to promote transcriptional heterogeneity and lineage commitment
-
Reynolds N., Latos P., Hynes-Allen A., Loos R., Leaford D., O'Shaughnessy A., Mosaku O., Signolet J., Brennecke P., Kalkan T., et al. NuRD suppresses pluripotency gene expression to promote transcriptional heterogeneity and lineage commitment. Stem Cell 2012, 10:583-594.
-
(2012)
Stem Cell
, vol.10
, pp. 583-594
-
-
Reynolds, N.1
Latos, P.2
Hynes-Allen, A.3
Loos, R.4
Leaford, D.5
O'Shaughnessy, A.6
Mosaku, O.7
Signolet, J.8
Brennecke, P.9
Kalkan, T.10
-
69
-
-
84856962477
-
Enhancer decommissioning by LSD1 during embryonic stem cell differentiation
-
Whyte W.A., Bilodeau S., Orlando D.A., Hoke H.A., Frampton G.M., Foster C.T., Cowley S.M., Young R.A. Enhancer decommissioning by LSD1 during embryonic stem cell differentiation. Nature 2012, 482:221-225.
-
(2012)
Nature
, vol.482
, pp. 221-225
-
-
Whyte, W.A.1
Bilodeau, S.2
Orlando, D.A.3
Hoke, H.A.4
Frampton, G.M.5
Foster, C.T.6
Cowley, S.M.7
Young, R.A.8
-
70
-
-
79956302047
-
TET1 and hydroxymethylcytosine in transcription and DNA methylation fidelity
-
Williams K., Christensen J., Pedersen M.T., Johansen J.V., Cloos P.A.C., Rappsilber J., Helin K. TET1 and hydroxymethylcytosine in transcription and DNA methylation fidelity. Nature 2011, 473:343-348.
-
(2011)
Nature
, vol.473
, pp. 343-348
-
-
Williams, K.1
Christensen, J.2
Pedersen, M.T.3
Johansen, J.V.4
Cloos, P.A.C.5
Rappsilber, J.6
Helin, K.7
-
71
-
-
84880418481
-
Activity-dependent phosphorylation of MeCP2 threonine 308 regulates interaction with NCoR
-
Ebert D.H., Gabel H.W., Robinson N.D., Kastan N.R., Hu L.S., Cohen S., Navarro A.J., Lyst M.J., Ekiert R., Bird A.P., et al. Activity-dependent phosphorylation of MeCP2 threonine 308 regulates interaction with NCoR. Nature 2013, 499:341-345.
-
(2013)
Nature
, vol.499
, pp. 341-345
-
-
Ebert, D.H.1
Gabel, H.W.2
Robinson, N.D.3
Kastan, N.R.4
Hu, L.S.5
Cohen, S.6
Navarro, A.J.7
Lyst, M.J.8
Ekiert, R.9
Bird, A.P.10
-
72
-
-
84883462358
-
-
Nature Neuroscience
-
Lyst M.J., Ekiert R., Ebert D.H., Merusi C., Nowak J., Selfridge J., Guy J., Kastan N.R., Robinson N.D., de Lima Alves F., et al. Rett syndrome mutations abolish the interaction of MeCP2 with the NCoR/SMRT co-repressor 2013, 16:898-902. Nature Neuroscience.
-
(2013)
Rett syndrome mutations abolish the interaction of MeCP2 with the NCoR/SMRT co-repressor
, vol.16
, pp. 898-902
-
-
Lyst, M.J.1
Ekiert, R.2
Ebert, D.H.3
Merusi, C.4
Nowak, J.5
Selfridge, J.6
Guy, J.7
Kastan, N.R.8
Robinson, N.D.9
de Lima Alves, F.10
-
73
-
-
34248195006
-
CpG methylation is targeted to transcription units in an invertebrate genome
-
Suzuki M.M., Kerr A.R.W., De Sousa D., Bird A. CpG methylation is targeted to transcription units in an invertebrate genome. Genome Res 2007, 17:625-631.
-
(2007)
Genome Res
, vol.17
, pp. 625-631
-
-
Suzuki, M.M.1
Kerr, A.R.W.2
De Sousa, D.3
Bird, A.4
-
74
-
-
77952355762
-
Genome-wide evolutionary analysis of eukaryotic DNA methylation
-
Zemach A., McDaniel I.E., Silva P., Zilberman D. Genome-wide evolutionary analysis of eukaryotic DNA methylation. Science 2010, 328:916-919.
-
(2010)
Science
, vol.328
, pp. 916-919
-
-
Zemach, A.1
McDaniel, I.E.2
Silva, P.3
Zilberman, D.4
-
75
-
-
33847292797
-
An unmethylated 3' promoter-proximal region is required for efficient transcription initiation
-
Appanah R., Dickerson D.R., Goyal P., Groudine M., Lorincz M.C. An unmethylated 3' promoter-proximal region is required for efficient transcription initiation. PLoS Genet 2007, 3:e27.
-
(2007)
PLoS Genet
, vol.3
-
-
Appanah, R.1
Dickerson, D.R.2
Goyal, P.3
Groudine, M.4
Lorincz, M.C.5
-
76
-
-
80555156105
-
In embryonic stem cells, ZFP57/KAP1 recognize a methylated hexanucleotide to affect chromatin and DNA methylation of imprinting control regions
-
Quenneville S., Verde G., Corsinotti A., Kapopoulou A., Jakobsson J., Offner S., Baglivo I., Pedone P.V., Grimaldi G., Riccio A., et al. In embryonic stem cells, ZFP57/KAP1 recognize a methylated hexanucleotide to affect chromatin and DNA methylation of imprinting control regions. Mol Cell 2011, 44:361-372.
-
(2011)
Mol Cell
, vol.44
, pp. 361-372
-
-
Quenneville, S.1
Verde, G.2
Corsinotti, A.3
Kapopoulou, A.4
Jakobsson, J.5
Offner, S.6
Baglivo, I.7
Pedone, P.V.8
Grimaldi, G.9
Riccio, A.10
-
77
-
-
0038136913
-
Methyl-CpG-binding protein, MeCP2, is a target molecule for maintenance DNA methyltransferase, Dnmt1
-
Kimura H., Shiota K. Methyl-CpG-binding protein, MeCP2, is a target molecule for maintenance DNA methyltransferase, Dnmt1. J Biol Chem 2003, 278:4806-4812.
-
(2003)
J Biol Chem
, vol.278
, pp. 4806-4812
-
-
Kimura, H.1
Shiota, K.2
-
78
-
-
10744230544
-
Suv39h-mediated histone H3 lysine 9 methylation directs DNA methylation to major satellite repeats at pericentric heterochromatin
-
Lehnertz B., Ueda Y., Derijck A.A.H.A., Braunschweig U., Perez-Burgos L., Kubicek S., Chen T., Li E., Jenuwein T., Peters A.H.F.M. Suv39h-mediated histone H3 lysine 9 methylation directs DNA methylation to major satellite repeats at pericentric heterochromatin. Curr Biol 2003, 13:1192-1200.
-
(2003)
Curr Biol
, vol.13
, pp. 1192-1200
-
-
Lehnertz, B.1
Ueda, Y.2
Derijck, A.A.H.A.3
Braunschweig, U.4
Perez-Burgos, L.5
Kubicek, S.6
Chen, T.7
Li, E.8
Jenuwein, T.9
Peters, A.H.F.M.10
-
79
-
-
77956193814
-
The Dnmt3a PWWP domain reads histone 3 lysine 36 trimethylation and guides DNA methylation
-
Dhayalan A., Rajavelu A., Rathert P., Tamas R., Jurkowska R.Z., Ragozin S., Jeltsch A. The Dnmt3a PWWP domain reads histone 3 lysine 36 trimethylation and guides DNA methylation. J Biol Chem 2010, 285:26114-26120.
-
(2010)
J Biol Chem
, vol.285
, pp. 26114-26120
-
-
Dhayalan, A.1
Rajavelu, A.2
Rathert, P.3
Tamas, R.4
Jurkowska, R.Z.5
Ragozin, S.6
Jeltsch, A.7
-
80
-
-
79955042533
-
Lysine methyltransferase G9a is required for de novo DNA methylation and the establishment, but not the maintenance, of proviral silencing
-
Leung D.C., Dong K.B., Maksakova I.A., Goyal P., Appanah R., Lee S., Tachibana M., Shinkai Y., Lehnertz B., Mager D.L., et al. Lysine methyltransferase G9a is required for de novo DNA methylation and the establishment, but not the maintenance, of proviral silencing. Proc Natl Acad Sci U S A 2011, 108:5718-5723.
-
(2011)
Proc Natl Acad Sci U S A
, vol.108
, pp. 5718-5723
-
-
Leung, D.C.1
Dong, K.B.2
Maksakova, I.A.3
Goyal, P.4
Appanah, R.5
Lee, S.6
Tachibana, M.7
Shinkai, Y.8
Lehnertz, B.9
Mager, D.L.10
-
81
-
-
84869087517
-
Association of UHRF1 with methylated H3K9 directs the maintenance of DNA methylation
-
Rothbart S.B., Krajewski K., Nady N., Tempel W., Xue S., Badeaux A.I., Barsyte-Lovejoy D., Martinez J.Y., Bedford M.T., Fuchs S.M., et al. Association of UHRF1 with methylated H3K9 directs the maintenance of DNA methylation. Nat Struct Mol Biol 2012, 19:1155-1160.
-
(2012)
Nat Struct Mol Biol
, vol.19
, pp. 1155-1160
-
-
Rothbart, S.B.1
Krajewski, K.2
Nady, N.3
Tempel, W.4
Xue, S.5
Badeaux, A.I.6
Barsyte-Lovejoy, D.7
Martinez, J.Y.8
Bedford, M.T.9
Fuchs, S.M.10
-
82
-
-
84875883306
-
UHRF1 targets DNMT1 for DNA methylation through cooperative binding of hemi-methylated DNA and methylated H3K9
-
Liu X., Gao Q., Li P., Zhao Q., Zhang J., Li J., Koseki H., Wong J. UHRF1 targets DNMT1 for DNA methylation through cooperative binding of hemi-methylated DNA and methylated H3K9. Nat Commun 2013, 4:1563.
-
(2013)
Nat Commun
, vol.4
, pp. 1563
-
-
Liu, X.1
Gao, Q.2
Li, P.3
Zhao, Q.4
Zhang, J.5
Li, J.6
Koseki, H.7
Wong, J.8
-
83
-
-
34547400458
-
Active and repressive chromatin are interspersed without spreading in an imprinted gene cluster in the mammalian genome
-
Regha K., Sloane M.A., Huang R., Pauler F.M., Warczok K.E., Melikant B., Radolf M., Martens J.H.A., Schotta G., Jenuwein T., et al. Active and repressive chromatin are interspersed without spreading in an imprinted gene cluster in the mammalian genome. Mol Cell 2007, 27:353-366.
-
(2007)
Mol Cell
, vol.27
, pp. 353-366
-
-
Regha, K.1
Sloane, M.A.2
Huang, R.3
Pauler, F.M.4
Warczok, K.E.5
Melikant, B.6
Radolf, M.7
Martens, J.H.A.8
Schotta, G.9
Jenuwein, T.10
-
84
-
-
15444372817
-
The profile of repeat-associated histone lysine methylation states in the mouse epigenome
-
Martens J.H.A., O'Sullivan R.J., Braunschweig U., Opravil S., Radolf M., Steinlein P., Jenuwein T. The profile of repeat-associated histone lysine methylation states in the mouse epigenome. EMBO J 2005, 24:800-812.
-
(2005)
EMBO J
, vol.24
, pp. 800-812
-
-
Martens, J.H.A.1
O'Sullivan, R.J.2
Braunschweig, U.3
Opravil, S.4
Radolf, M.5
Steinlein, P.6
Jenuwein, T.7
-
85
-
-
84875201183
-
Naive pluripotency is associated with global DNA hypomethylation
-
Leitch H.G., McEwen K.R., Turp A., Encheva V., Carroll T., Grabole N., Mansfield W., Nashun B., Knezovich J.G., Smith A., et al. Naive pluripotency is associated with global DNA hypomethylation. Nat Struct Mol Biol 2013, 20:311-316.
-
(2013)
Nat Struct Mol Biol
, vol.20
, pp. 311-316
-
-
Leitch, H.G.1
McEwen, K.R.2
Turp, A.3
Encheva, V.4
Carroll, T.5
Grabole, N.6
Mansfield, W.7
Nashun, B.8
Knezovich, J.G.9
Smith, A.10
-
86
-
-
84884133672
-
Whole-genome bisulfite sequencing of two distinct interconvertible DNA methylomes of mouse embryonic stem cells
-
Habibi E., Brinkman A.B., Arand J., Kroeze L.I., Kerstens H.H.D., Matarese F., Lepikhov K., Gut M., Brun-Heath I., Hubner N.C., et al. Whole-genome bisulfite sequencing of two distinct interconvertible DNA methylomes of mouse embryonic stem cells. Cell Stem Cell 2013, 13:360-369.
-
(2013)
Cell Stem Cell
, vol.13
, pp. 360-369
-
-
Habibi, E.1
Brinkman, A.B.2
Arand, J.3
Kroeze, L.I.4
Kerstens, H.H.D.5
Matarese, F.6
Lepikhov, K.7
Gut, M.8
Brun-Heath, I.9
Hubner, N.C.10
-
87
-
-
84884164554
-
FGF signaling inhibition in ESCs drives rapid genome-wide demethylation to the epigenetic ground state of pluripotency
-
Ficz G., Hore T.A., Santos F., Lee H.J., Dean W., Arand J., Krueger F., Oxley D., Paul Y.-L., Walter J., et al. FGF signaling inhibition in ESCs drives rapid genome-wide demethylation to the epigenetic ground state of pluripotency. Cell Stem Cell 2013, 13:351-359.
-
(2013)
Cell Stem Cell
, vol.13
, pp. 351-359
-
-
Ficz, G.1
Hore, T.A.2
Santos, F.3
Lee, H.J.4
Dean, W.5
Arand, J.6
Krueger, F.7
Oxley, D.8
Paul, Y.-L.9
Walter, J.10
-
88
-
-
0035394961
-
The p120 catenin partner Kaiso is a DNA methylation-dependent transcriptional repressor
-
Prokhortchouk A., Hendrich B., Jorgensen H., Ruzov A., Wilm M., Georgiev G., Bird A., Prokhortchouk E. The p120 catenin partner Kaiso is a DNA methylation-dependent transcriptional repressor. Genes Dev 2001, 15:1613-1618.
-
(2001)
Genes Dev
, vol.15
, pp. 1613-1618
-
-
Prokhortchouk, A.1
Hendrich, B.2
Jorgensen, H.3
Ruzov, A.4
Wilm, M.5
Georgiev, G.6
Bird, A.7
Prokhortchouk, E.8
-
89
-
-
33645218438
-
A family of human zinc finger proteins that bind methylated DNA and repress transcription
-
Filion G.J.P., Zhenilo S., Salozhin S., Yamada D., Prokhortchouk E., Defossez P-A. A family of human zinc finger proteins that bind methylated DNA and repress transcription. Mol Cell Biol 2006, 26:169-181.
-
(2006)
Mol Cell Biol
, vol.26
, pp. 169-181
-
-
Filion, G.J.P.1
Zhenilo, S.2
Salozhin, S.3
Yamada, D.4
Prokhortchouk, E.5
Defossez, P.-A.6
-
90
-
-
84877877569
-
ZBTB33 binds unmethylated regions of the genome associated with actively expressed genes
-
Blattler A., Yao L., Wang Y., Ye Z., Jin V.X., Farnham P.J. ZBTB33 binds unmethylated regions of the genome associated with actively expressed genes. Epigenet Chromat 2013, 6:13.
-
(2013)
Epigenet Chromat
, vol.6
, pp. 13
-
-
Blattler, A.1
Yao, L.2
Wang, Y.3
Ye, Z.4
Jin, V.X.5
Farnham, P.J.6
-
91
-
-
79957577720
-
Primate CpG islands are maintained by heterogeneous evolutionary regimes involving minimal selection
-
Cohen N.M., Kenigsberg E., Tanay A. Primate CpG islands are maintained by heterogeneous evolutionary regimes involving minimal selection. Cell 2011, 145:773-786.
-
(2011)
Cell
, vol.145
, pp. 773-786
-
-
Cohen, N.M.1
Kenigsberg, E.2
Tanay, A.3
-
92
-
-
0035930660
-
Dnmt3L and the establishment of maternal genomic imprints
-
Bourc'his D., Xu G.L., Lin C.S., Bollman B., Bestor T.H. Dnmt3L and the establishment of maternal genomic imprints. Science 2001, 294:2536-2539.
-
(2001)
Science
, vol.294
, pp. 2536-2539
-
-
Bourc'his, D.1
Xu, G.L.2
Lin, C.S.3
Bollman, B.4
Bestor, T.H.5
-
93
-
-
3042641718
-
DNMT3L stimulates the DNA methylation activity of Dnmt3a and Dnmt3b through a direct interaction
-
Suetake I., Shinozaki F., Miyagawa J., Takeshima H., Tajima S. DNMT3L stimulates the DNA methylation activity of Dnmt3a and Dnmt3b through a direct interaction. J Biol Chem 2004, 279:27816-27823.
-
(2004)
J Biol Chem
, vol.279
, pp. 27816-27823
-
-
Suetake, I.1
Shinozaki, F.2
Miyagawa, J.3
Takeshima, H.4
Tajima, S.5
-
94
-
-
0026439115
-
A targeting sequence directs DNA methyltransferase to sites of DNA replication in mammalian nuclei
-
Leonhardt H., Page A.W., Weier H.U., Bestor T.H. A targeting sequence directs DNA methyltransferase to sites of DNA replication in mammalian nuclei. Cell 1992, 71:865-873.
-
(1992)
Cell
, vol.71
, pp. 865-873
-
-
Leonhardt, H.1
Page, A.W.2
Weier, H.U.3
Bestor, T.H.4
-
95
-
-
4744372577
-
Severe global DNA hypomethylation blocks differentiation and induces histone hyperacetylation in embryonic stem cells
-
Jackson M., Krassowska A., Gilbert N., Chevassut T., Forrester L., Ansell J., Ramsahoye B. Severe global DNA hypomethylation blocks differentiation and induces histone hyperacetylation in embryonic stem cells. Mol Cell Biol 2004, 24:8862-8871.
-
(2004)
Mol Cell Biol
, vol.24
, pp. 8862-8871
-
-
Jackson, M.1
Krassowska, A.2
Gilbert, N.3
Chevassut, T.4
Forrester, L.5
Ansell, J.6
Ramsahoye, B.7
-
96
-
-
84863889319
-
In vivo control of CpG and non-CpG DNA methylation by DNA methyltransferases
-
Arand J., Spieler D., Karius T., Branco M.R., Meilinger D., Meissner A., Jenuwein T., Xu G., Leonhardt H., Wolf V., et al. In vivo control of CpG and non-CpG DNA methylation by DNA methyltransferases. PLoS Genet 2012, 8:e1002750.
-
(2012)
PLoS Genet
, vol.8
-
-
Arand, J.1
Spieler, D.2
Karius, T.3
Branco, M.R.4
Meilinger, D.5
Meissner, A.6
Jenuwein, T.7
Xu, G.8
Leonhardt, H.9
Wolf, V.10
-
97
-
-
0037074009
-
ROS1, a repressor of transcriptional gene silencing in Arabidopsis, encodes a DNA glycosylase/lyase
-
Gong Z., Morales-Ruiz T., Ariza R.R., Roldán-Arjona T., David L., Zhu J.-K. ROS1, a repressor of transcriptional gene silencing in Arabidopsis, encodes a DNA glycosylase/lyase. Cell 2002, 111:803-814.
-
(2002)
Cell
, vol.111
, pp. 803-814
-
-
Gong, Z.1
Morales-Ruiz, T.2
Ariza, R.R.3
Roldán-Arjona, T.4
David, L.5
Zhu, J.-K.6
-
98
-
-
77956095231
-
Active DNA demethylation: many roads lead to Rome
-
Wu S.C., Zhang Y. Active DNA demethylation: many roads lead to Rome. Nat Rev Mol Cell Biol 2010, 11:607-620.
-
(2010)
Nat Rev Mol Cell Biol
, vol.11
, pp. 607-620
-
-
Wu, S.C.1
Zhang, Y.2
-
99
-
-
80052495940
-
Tet-mediated formation of 5-carboxylcytosine and its excision by TDG in mammalian DNA
-
He Y-F., Li B-Z., Li Z., Liu P., Wang Y., Tang Q., Ding J., Jia Y., Chen Z., Li L., et al. Tet-mediated formation of 5-carboxylcytosine and its excision by TDG in mammalian DNA. Science 2011, 333:1303-1307.
-
(2011)
Science
, vol.333
, pp. 1303-1307
-
-
He, Y.-F.1
Li, B.-Z.2
Li, Z.3
Liu, P.4
Wang, Y.5
Tang, Q.6
Ding, J.7
Jia, Y.8
Chen, Z.9
Li, L.10
-
100
-
-
84884827480
-
Dnmt3L antagonizes DNA methylationat bivalent promoters and favors DNA methylation at Gene bodies in ESCs
-
Neri F., Krepelova A., Incarnato D., Maldotti M., Parlato C., Galvagni F., Matarese F., Stunnenberg H.G., Oliviero S. Dnmt3L antagonizes DNA methylationat bivalent promoters and favors DNA methylation at Gene bodies in ESCs. Cell 2013, 155:121-134.
-
(2013)
Cell
, vol.155
, pp. 121-134
-
-
Neri, F.1
Krepelova, A.2
Incarnato, D.3
Maldotti, M.4
Parlato, C.5
Galvagni, F.6
Matarese, F.7
Stunnenberg, H.G.8
Oliviero, S.9
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