-
1
-
-
84863986133
-
Functions of DNA methylation: Islands, start sites, gene bodies and beyond
-
10.1038/nrg3230 22641018
-
Functions of DNA methylation: islands, start sites, gene bodies and beyond. Jones PA, Nat Rev Genet 2012 13 484 492 10.1038/nrg3230 22641018
-
(2012)
Nat Rev Genet
, vol.13
, pp. 484-492
-
-
Jones, P.A.1
-
2
-
-
79953163378
-
Chromatin higher-order structures and gene regulation
-
10.1016/j.gde.2011.01.022 21342762
-
Chromatin higher-order structures and gene regulation. Li G, Reinberg D, Curr Opin Genet Dev 2011 21 175 186 10.1016/j.gde.2011.01.022 21342762
-
(2011)
Curr Opin Genet Dev
, vol.21
, pp. 175-186
-
-
Li, G.1
Reinberg, D.2
-
3
-
-
84861916932
-
Bisulfite sequencing of chromatin immunoprecipitated DNA (BisChIP-seq) directly informs methylation status of histone-modified DNA
-
10.1101/gr.132076.111 22466171
-
Bisulfite sequencing of chromatin immunoprecipitated DNA (BisChIP-seq) directly informs methylation status of histone-modified DNA. Statham AL, Robinson MD, Song JZ, Coolen MW, Stirzaker C, Clark SJ, Genome Res 2012 22 1120 1127 10.1101/gr.132076.111 22466171
-
(2012)
Genome Res
, vol.22
, pp. 1120-1127
-
-
Statham, A.L.1
Robinson, M.D.2
Song, J.Z.3
Coolen, M.W.4
Stirzaker, C.5
Clark, S.J.6
-
4
-
-
84861883921
-
Sequential ChIP-bisulfite sequencing enables direct genome-scale investigation of chromatin and DNA methylation cross-talk
-
10.1101/gr.133728.111 22466170
-
Sequential ChIP-bisulfite sequencing enables direct genome-scale investigation of chromatin and DNA methylation cross-talk. Brinkman AB, Gu H, Bartels SJJ, Zhang Y, Matarese F, Simmer F, Marks H, Bock C, Gnirke A, Meissner A, Stunnenberg HG, Genome Res 2012 22 1128 1138 10.1101/gr.133728.111 22466170
-
(2012)
Genome Res
, vol.22
, pp. 1128-1138
-
-
Brinkman, A.B.1
Gu, H.2
Bartels, S.J.J.3
Zhang, Y.4
Matarese, F.5
Simmer, F.6
Marks, H.7
Bock, C.8
Gnirke, A.9
Meissner, A.10
Stunnenberg, H.G.11
-
5
-
-
77954688477
-
5-azacytidine treatment reorganizes genomic histone modification patterns
-
10.4161/epi.5.3.11409
-
5-azacytidine treatment reorganizes genomic histone modification patterns. Komashko VM, Farnham PJ, Epigenetics 2010 5 229 240 10.4161/epi.5.3.11409
-
(2010)
Epigenetics
, vol.5
, pp. 229-240
-
-
Komashko, V.M.1
Farnham, P.J.2
-
6
-
-
84865790047
-
An integrated encyclopedia of DNA elements in the human genome
-
10.1038/nature11247 22955616
-
An integrated encyclopedia of DNA elements in the human genome. Dunham I, Kundaje A, Aldred SF, Collins PJ, Davis CA, Doyle F, Epstein CB, Frietze S, Harrow J, Kaul R, Khatun J, Lajoie BR, Landt SG, Lee B-K, Pauli F, Rosenbloom KR, Sabo P, Safi A, Sanyal A, Shoresh N, Simon JM, Song L, Trinklein ND, Altshuler RC, Birney E, Brown JB, Cheng C, Djebali S, Dong X, Dunham I, Nature 2012 489 57 74 10.1038/nature11247 22955616
-
(2012)
Nature
, vol.489
, pp. 57-74
-
-
Dunham, I.1
Kundaje, A.2
Aldred, S.F.3
Collins, P.J.4
Davis, C.A.5
Doyle, F.6
Epstein, C.B.7
Frietze, S.8
Harrow, J.9
Kaul, R.10
Khatun, J.11
Lajoie, B.R.12
Landt, S.G.13
Lee, B.-K.14
Pauli, F.15
Rosenbloom, K.R.16
Sabo, P.17
Safi, A.18
Sanyal, A.19
Shoresh, N.20
Simon, J.M.21
Song, L.22
Trinklein, N.D.23
Altshuler, R.C.24
Birney, E.25
Brown, J.B.26
Cheng, C.27
Djebali, S.28
Dong, X.29
Dunham, I.30
more..
-
7
-
-
33645218438
-
A family of human zinc finger proteins that bind methylated DNA and repress transcription
-
10.1128/MCB.26.1.169-181.2006 16354688
-
A family of human zinc finger proteins that bind methylated DNA and repress transcription. Filion GJP, Zhenilo S, Salozhin S, Yamada D, Prokhortchouk E, Defossez P-A, Mol Cell Biol 2006 26 169 181 10.1128/MCB.26.1.169-181.2006 16354688
-
(2006)
Mol Cell Biol
, vol.26
, pp. 169-181
-
-
Filion, G.J.P.1
Zhenilo, S.2
Salozhin, S.3
Yamada, D.4
Prokhortchouk, E.5
Defossez, P.-A.6
-
8
-
-
0035394961
-
The p120 catenin partner Kaiso is a DNA methylation-dependent transcriptional repressor
-
10.1101/gad.198501 11445535
-
The p120 catenin partner Kaiso is a DNA methylation-dependent transcriptional repressor. Prokhortchouk A, Hendrich B, Jørgensen H, Ruzov A, Wilm M, Georgiev G, Bird A, Prokhortchouk E, Genes Dev 2001 15 1613 1618 10.1101/gad.198501 11445535
-
(2001)
Genes Dev
, vol.15
, pp. 1613-1618
-
-
Prokhortchouk, A.1
Hendrich, B.2
Jørgensen, H.3
Ruzov, A.4
Wilm, M.5
Georgiev, G.6
Bird, A.7
Prokhortchouk, E.8
-
9
-
-
0036640736
-
The p120(ctn)-binding partner Kaiso is a bi-modal DNA-binding protein that recognizes both a sequence-specific consensus and methylated CpG dinucleotides
-
10.1093/nar/gkf398 12087177
-
The p120(ctn)-binding partner Kaiso is a bi-modal DNA-binding protein that recognizes both a sequence-specific consensus and methylated CpG dinucleotides. Daniel JM, Spring CM, Crawford HC, Reynolds AB, Baig A, Nucleic Acids Res 2002 30 2911 2919 10.1093/nar/gkf398 12087177
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 2911-2919
-
-
Daniel, J.M.1
Spring, C.M.2
Crawford, H.C.3
Reynolds, A.B.4
Baig, A.5
-
10
-
-
0141638426
-
N-CoR mediates DNA methylation-dependent repression through a methyl CpG-binding protein Kaiso
-
10.1016/j.molcel.2003.08.008 14527417
-
N-CoR mediates DNA methylation-dependent repression through a methyl CpG-binding protein Kaiso. Yoon H-G, Chan DW, Reynolds AB, Qin J, Wong J, Mol Cell 2003 12 723 734 10.1016/j.molcel.2003.08.008 14527417
-
(2003)
Mol Cell
, vol.12
, pp. 723-734
-
-
Yoon, H.-G.1
Chan, D.W.2
Reynolds, A.B.3
Qin, J.4
Wong, J.5
-
11
-
-
77951230100
-
Sole-Search: An integrated analysis program for peak detection and functional annotation using ChIP-seq data
-
10.1093/nar/gkp1012 19906703
-
Sole-Search: an integrated analysis program for peak detection and functional annotation using ChIP-seq data. Blahnik KR, Dou L, O'geen H, McPhillips T, Xu X, Cao AR, Iyengar S, Nicolet CM, Ludäscher B, Korf I, Farnham PJ, Nucleic Acids Res 2010 38 13 10.1093/nar/gkp1012 19906703
-
(2010)
Nucleic Acids Res
, vol.38
, pp. 513
-
-
Blahnik, K.R.1
Dou, L.2
O'Geen, H.3
McPhillips, T.4
Xu, X.5
Cao, A.R.6
Iyengar, S.7
Nicolet, C.M.8
Ludäscher, B.9
Korf, I.10
Farnham, P.J.11
-
12
-
-
79951874562
-
Characterization of the contradictory chromatin signatures at the 3′ exons of zinc finger genes
-
10.1371/journal.pone.0017121 21347206
-
Characterization of the contradictory chromatin signatures at the 3′ exons of zinc finger genes. Blahnik KR, Dou L, Echipare L, Iyengar S, O'geen H, Sanchez E, Zhao Y, Marra MA, Hirst M, Costello JF, Korf I, Farnham PJ, PLoS One 2011 6 17121 10.1371/journal.pone.0017121 21347206
-
(2011)
PLoS One
, vol.6
, pp. 517121
-
-
Blahnik, K.R.1
Dou, L.2
Echipare, L.3
Iyengar, S.4
O'Geen, H.5
Sanchez, E.6
Zhao, Y.7
Marra, M.A.8
Hirst, M.9
Costello, J.F.10
Korf, I.11
Farnham, P.J.12
-
13
-
-
84865777819
-
ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia
-
10.1101/gr.136184.111 22955991
-
ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia. Landt SG, Marinov GK, Kundaje A, Kheradpour P, Pauli F, Batzoglou S, Bernstein BE, Bickel P, Brown JB, Cayting P, Chen Y, DeSalvo G, Epstein C, Fisher-Aylor KI, Euskirchen G, Gerstein M, Gertz J, Hartemink AJ, Hoffman MM, Iyer VR, Jung YL, Karmakar S, Kellis M, Kharchenko PV, Li Q, Liu T, Liu XS, Ma L, Milosavljevic A, Myers RM, Genome Res 2012 22 1813 1831 10.1101/gr.136184.111 22955991
-
(2012)
Genome Res
, vol.22
, pp. 1813-1831
-
-
Landt, S.G.1
Marinov, G.K.2
Kundaje, A.3
Kheradpour, P.4
Pauli, F.5
Batzoglou, S.6
Bernstein, B.E.7
Bickel, P.8
Brown, J.B.9
Cayting, P.10
Chen, Y.11
Desalvo, G.12
Epstein, C.13
Fisher-Aylor, K.I.14
Euskirchen, G.15
Gerstein, M.16
Gertz, J.17
Hartemink, A.J.18
Hoffman, M.M.19
Iyer, V.R.20
Jung, Y.L.21
Karmakar, S.22
Kellis, M.23
Kharchenko, P.V.24
Li, Q.25
Liu, T.26
Liu, X.S.27
Ma, L.28
Milosavljevic, A.29
Myers, R.M.30
more..
-
14
-
-
79955564639
-
Measuring reproducibility of high-throughput experiments
-
10.1214/11-AOAS466
-
Measuring reproducibility of high-throughput experiments. Li Q, Brown JB, Huang H, Bickel PJ, The Annals of Applied Statistics 2011 5 1752 1779 10.1214/11-AOAS466
-
(2011)
The Annals of Applied Statistics
, vol.5
, pp. 1752-1779
-
-
Li, Q.1
Brown, J.B.2
Huang, H.3
Bickel, P.J.4
-
15
-
-
54749110669
-
Kaiso contributes to DNA methylation-dependent silencing of tumor suppressor genes in colon cancer cell lines
-
10.1158/0008-5472.CAN-08-0344 18794111
-
Kaiso contributes to DNA methylation-dependent silencing of tumor suppressor genes in colon cancer cell lines. Lopes EC, Valls E, Figueroa ME, Mazur A, Meng F-G, Chiosis G, Laird PW, Schreiber-Agus N, Greally JM, Prokhortchouk E, Melnick A, Cancer Res 2008 68 7258 7263 10.1158/0008-5472.CAN- 08-0344 18794111
-
(2008)
Cancer Res
, vol.68
, pp. 7258-7263
-
-
Lopes, E.C.1
Valls, E.2
Figueroa, M.E.3
Mazur, A.4
Meng, F.-G.5
Chiosis, G.6
Laird, P.W.7
Schreiber-Agus, N.8
Greally, J.M.9
Prokhortchouk, E.10
Melnick, A.11
-
16
-
-
77953228178
-
Kaiso regulates Znf131-mediated transcriptional activation
-
10.1016/j.yexcr.2010.03.011 20303951
-
Kaiso regulates Znf131-mediated transcriptional activation. Donaldson NS, Nordgaard CL, Pierre CC, Kelly KF, Robinson SC, Swystun L, Henriquez R, Graham M, Daniel JM, Exp Cell Res 2010 316 1692 1705 10.1016/j.yexcr.2010.03.011 20303951
-
(2010)
Exp Cell Res
, vol.316
, pp. 1692-1705
-
-
Donaldson, N.S.1
Nordgaard, C.L.2
Pierre, C.C.3
Kelly, K.F.4
Robinson, S.C.5
Swystun, L.6
Henriquez, R.7
Graham, M.8
Daniel, J.M.9
-
17
-
-
12344317313
-
Nuclear import of the BTB/POZ transcriptional regulator Kaiso
-
10.1242/jcs.01541 15564377
-
Nuclear import of the BTB/POZ transcriptional regulator Kaiso. Kelly KF, Otchere AA, Graham M, Daniel JM, J Cell Sci 2004 117 6143 6152 10.1242/jcs.01541 15564377
-
(2004)
J Cell Sci
, vol.117
, pp. 6143-6152
-
-
Kelly, K.F.1
Otchere, A.A.2
Graham, M.3
Daniel, J.M.4
-
18
-
-
84860783115
-
Integrative genomics identifies the corepressor SMRT as a gatekeeper of adipogenesis through the transcription factors C/EBPβ and KAISO
-
10.1016/j.molcel.2012.03.017 22521691
-
Integrative genomics identifies the corepressor SMRT as a gatekeeper of adipogenesis through the transcription factors C/EBPβ and KAISO. Raghav SK, Waszak SM, Krier I, Gubelmann C, Isakova A, Mikkelsen TS, Deplancke B, Mol Cell 2012 46 335 350 10.1016/j.molcel.2012.03.017 22521691
-
(2012)
Mol Cell
, vol.46
, pp. 335-350
-
-
Raghav, S.K.1
Waszak, S.M.2
Krier, I.3
Gubelmann, C.4
Isakova, A.5
Mikkelsen, T.S.6
Deplancke, B.7
-
19
-
-
84862908850
-
Extensive promoter-centered chromatin interactions provide a topological basis for transcription regulation
-
10.1016/j.cell.2011.12.014 22265404
-
Extensive promoter-centered chromatin interactions provide a topological basis for transcription regulation. Li G, Ruan X, Auerbach RK, Sandhu KS, Zheng M, Wang P, Poh HM, Goh Y, Lim J, Zhang J, Sim HS, Peh SQ, Mulawadi FH, Ong CT, Orlov YL, Hong S, Zhang Z, Landt S, Raha D, Euskirchen G, Wei C-L, Ge W, Wang H, Davis C, Fisher-Aylor KI, Mortazavi A, Gerstein M, Gingeras T, Wold B, Sun Y, Cell 2012 148 84 98 10.1016/j.cell.2011.12.014 22265404
-
(2012)
Cell
, vol.148
, pp. 84-98
-
-
Li, G.1
Ruan, X.2
Auerbach, R.K.3
Sandhu, K.S.4
Zheng, M.5
Wang, P.6
Poh, H.M.7
Goh, Y.8
Lim, J.9
Zhang, J.10
Sim, H.S.11
Peh, S.Q.12
Mulawadi, F.H.13
Ong, C.T.14
Orlov, Y.L.15
Hong, S.16
Zhang, Z.17
Landt, S.18
Raha, D.19
Euskirchen, G.20
Wei, C.-L.21
Ge, W.22
Wang, H.23
Davis, C.24
Fisher-Aylor, K.I.25
Mortazavi, A.26
Gerstein, M.27
Gingeras, T.28
Wold, B.29
Sun, Y.30
more..
-
20
-
-
84866108697
-
Genome-wide studies of CCCTC-binding factor (CTCF) and cohesin provide insight into chromatin structure and regulation
-
10.1074/jbc.R111.324962 22952237
-
Genome-wide studies of CCCTC-binding factor (CTCF) and cohesin provide insight into chromatin structure and regulation. Lee B-K, Iyer VR, J Biol Chem 2012 287 30906 30913 10.1074/jbc.R111.324962 22952237
-
(2012)
J Biol Chem
, vol.287
, pp. 30906-30913
-
-
Lee, B.-K.1
Iyer, V.R.2
-
21
-
-
84870552401
-
Genome-wide mapping of nucleosome positioning and DNA methylation within individual DNA molecules
-
10.1101/gr.143008.112 22960375
-
Genome-wide mapping of nucleosome positioning and DNA methylation within individual DNA molecules. Kelly TK, Liu Y, Lay FD, Liang G, Berman BP, Jones PA, Genome Res 2012 22 2497 2506 10.1101/gr.143008.112 22960375
-
(2012)
Genome Res
, vol.22
, pp. 2497-2506
-
-
Kelly, T.K.1
Liu, Y.2
Lay, F.D.3
Liang, G.4
Berman, B.P.5
Jones, P.A.6
-
22
-
-
77952567987
-
Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities
-
10.1016/j.molcel.2010.05.004 20513432
-
Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities. Heinz S, Benner C, Spann N, Bertolino E, Lin YC, Laslo P, Cheng JX, Murre C, Singh H, Glass CK, Mol Cell 2010 38 576 589 10.1016/j.molcel.2010.05.004 20513432
-
(2010)
Mol Cell
, vol.38
, pp. 576-589
-
-
Heinz, S.1
Benner, C.2
Spann, N.3
Bertolino, E.4
Lin, Y.C.5
Laslo, P.6
Cheng, J.X.7
Murre, C.8
Singh, H.9
Glass, C.K.10
-
23
-
-
65549160578
-
The non-methylated DNA-binding function of Kaiso is not required in early Xenopus laevis development
-
10.1242/dev.025569 19158185
-
The non-methylated DNA-binding function of Kaiso is not required in early Xenopus laevis development. Ruzov A, Savitskaya E, Hackett JA, Reddington JP, Prokhortchouk A, Madej MJ, Chekanov N, Li M, Dunican DS, Prokhortchouk E, Pennings S, Meehan RR, Development 2009 136 729 738 10.1242/dev.025569 19158185
-
(2009)
Development
, vol.136
, pp. 729-738
-
-
Ruzov, A.1
Savitskaya, E.2
Hackett, J.A.3
Reddington, J.P.4
Prokhortchouk, A.5
Madej, M.J.6
Chekanov, N.7
Li, M.8
Dunican, D.S.9
Prokhortchouk, E.10
Pennings, S.11
Meehan, R.R.12
-
24
-
-
30044435328
-
The human enhancer blocker CTC-binding factor interacts with the transcription factor Kaiso
-
10.1074/jbc.M510802200 16230345
-
The human enhancer blocker CTC-binding factor interacts with the transcription factor Kaiso. Defossez PA, J Biol Chem 2005 280 43017 43023 10.1074/jbc.M510802200 16230345
-
(2005)
J Biol Chem
, vol.280
, pp. 43017-43023
-
-
Defossez, P.A.1
-
25
-
-
84865852567
-
Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors
-
10.1101/gr.139105.112 22955990
-
Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors. Wang J, Zhuang J, Iyer S, Lin X, Whitfield TW, Greven MC, Pierce BG, Dong X, Kundaje A, Cheng Y, Rando OJ, Birney E, Myers RM, Noble WS, Snyder M, Weng Z, Genome Res 2012 22 1798 1812 10.1101/gr.139105.112 22955990
-
(2012)
Genome Res
, vol.22
, pp. 1798-1812
-
-
Wang, J.1
Zhuang, J.2
Iyer, S.3
Lin, X.4
Whitfield, T.W.5
Greven, M.C.6
Pierce, B.G.7
Dong, X.8
Kundaje, A.9
Cheng, Y.10
Rando, O.J.11
Birney, E.12
Myers, R.M.13
Noble, W.S.14
Snyder, M.15
Weng, Z.16
-
26
-
-
84858701418
-
Kaiso uses all three zinc fingers and adjacent sequence motifs for high affinity binding to sequence-specific and methyl-CpG DNA targets
-
10.1016/j.febslet.2012.01.045 22300642
-
Kaiso uses all three zinc fingers and adjacent sequence motifs for high affinity binding to sequence-specific and methyl-CpG DNA targets. Buck-Koehntop BA, Martinez-Yamout MA, Dyson HJ, Wright PE, FEBS Lett 2012 586 734 739 10.1016/j.febslet.2012.01.045 22300642
-
(2012)
FEBS Lett
, vol.586
, pp. 734-739
-
-
Buck-Koehntop, B.A.1
Martinez-Yamout, M.A.2
Dyson, H.J.3
Wright, P.E.4
-
27
-
-
80053443628
-
A SILAC-based screen for Methyl-CpG binding proteins identifies RBP-J as a DNA methylation and sequence-specific binding protein
-
10.1371/journal.pone.0025884 21991380
-
A SILAC-based screen for Methyl-CpG binding proteins identifies RBP-J as a DNA methylation and sequence-specific binding protein. Bartels SJJ, Spruijt CG, Brinkman AB, Jansen PWTC, Vermeulen M, Stunnenberg HG, PLoS One 2011 6 25884 10.1371/journal.pone.0025884 21991380
-
(2011)
PLoS One
, vol.6
, pp. 525884
-
-
Bartels, S.J.J.1
Spruijt, C.G.2
Brinkman, A.B.3
Jansen, P.4
Vermeulen, M.5
Stunnenberg, H.G.6
-
28
-
-
84866544521
-
Molecular basis for recognition of methylated and specific DNA sequences by the zinc finger protein Kaiso
-
10.1073/pnas.1213726109 22949637
-
Molecular basis for recognition of methylated and specific DNA sequences by the zinc finger protein Kaiso. Buck-Koehntop BA, Stanfield RL, Ekiert DC, Martinez-Yamout MA, Dyson HJ, Wilson IA, Wright PE, Proc Natl Acad Sci USA 2012 109 15229 15234 10.1073/pnas.1213726109 22949637
-
(2012)
Proc Natl Acad Sci USA
, vol.109
, pp. 15229-15234
-
-
Buck-Koehntop, B.A.1
Stanfield, R.L.2
Ekiert, D.C.3
Martinez-Yamout, M.A.4
Dyson, H.J.5
Wilson, I.A.6
Wright, P.E.7
-
29
-
-
79551590211
-
W-ChIPeaks: A comprehensive web application tool for processing ChIP-chip and ChIP-seq data
-
10.1093/bioinformatics/btq669 21138948
-
W-ChIPeaks: a comprehensive web application tool for processing ChIP-chip and ChIP-seq data. Lan X, Bonneville R, Apostolos J, Wu W, Jin VX, Bioinformatics 2011 27 428 430 10.1093/bioinformatics/btq669 21138948
-
(2011)
Bioinformatics
, vol.27
, pp. 428-430
-
-
Lan, X.1
Bonneville, R.2
Apostolos, J.3
Wu, W.4
Jin, V.X.5
-
30
-
-
55549103719
-
E2F in vivo binding specificity: Comparison of consensus versus nonconsensus binding sites
-
10.1101/gr.080622.108 18836037
-
E2F in vivo binding specificity: comparison of consensus versus nonconsensus binding sites. Rabinovich A, Jin VX, Rabinovich R, Xu X, Farnham PJ, Genome Res 2008 18 1763 1777 10.1101/gr.080622.108 18836037
-
(2008)
Genome Res
, vol.18
, pp. 1763-1777
-
-
Rabinovich, A.1
Jin, V.X.2
Rabinovich, R.3
Xu, X.4
Farnham, P.J.5
-
31
-
-
68949213578
-
Insights from genomic profiling of transcription factors
-
10.1038/nrg2636 19668247
-
Insights from genomic profiling of transcription factors. Farnham PJ, Nat Rev Genet 2009 10 605 616 10.1038/nrg2636 19668247
-
(2009)
Nat Rev Genet
, vol.10
, pp. 605-616
-
-
Farnham, P.J.1
-
32
-
-
84865755978
-
The accessible chromatin landscape of the human genome
-
10.1038/nature11232 22955617
-
The accessible chromatin landscape of the human genome. Thurman RE, Rynes E, Humbert R, Vierstra J, Maurano MT, Haugen E, Sheffield NC, Stergachis AB, Wang H, Vernot B, Garg K, John S, Sandstrom R, Bates D, Boatman L, Canfield TK, Diegel M, Dunn D, Ebersol AK, Frum T, Giste E, Johnson AK, Johnson EM, Kutyavin T, Lajoie B, Lee B-K, Lee K, London D, Lotakis D, Neph S, Nature 2012 489 75 82 10.1038/nature11232 22955617
-
(2012)
Nature
, vol.489
, pp. 75-82
-
-
Thurman, R.E.1
Rynes, E.2
Humbert, R.3
Vierstra, J.4
Maurano, M.T.5
Haugen, E.6
Sheffield, N.C.7
Stergachis, A.B.8
Wang, H.9
Vernot, B.10
Garg, K.11
John, S.12
Sandstrom, R.13
Bates, D.14
Boatman, L.15
Canfield, T.K.16
Diegel, M.17
Dunn, D.18
Ebersol, A.K.19
Frum, T.20
Giste, E.21
Johnson, A.K.22
Johnson, E.M.23
Kutyavin, T.24
Lajoie, B.25
Lee, B.-K.26
Lee, K.27
London, D.28
Lotakis, D.29
Neph, S.30
more..
-
33
-
-
84870674869
-
Controls of nucleosome positioning in the human genome
-
10.1371/journal.pgen.1003036 23166509
-
Controls of nucleosome positioning in the human genome. Gaffney DJ, McVicker G, Pai AA, Fondufe-Mittendorf YN, Lewellen N, Michelini K, Widom J, Gilad Y, Pritchard JK, PLoS Genet 2012 8 1003036 10.1371/journal.pgen.1003036 23166509
-
(2012)
PLoS Genet
, vol.8
, pp. 51003036
-
-
Gaffney, D.J.1
McVicker, G.2
Pai, A.A.3
Fondufe-Mittendorf, Y.N.4
Lewellen, N.5
Michelini, K.6
Widom, J.7
Gilad, Y.8
Pritchard, J.K.9
-
34
-
-
33847070442
-
The role of chromatin during transcription
-
10.1016/j.cell.2007.01.015 17320508
-
The role of chromatin during transcription. Li B, Carey M, Workman JL, Cell 2007 128 707 719 10.1016/j.cell.2007.01.015 17320508
-
(2007)
Cell
, vol.128
, pp. 707-719
-
-
Li, B.1
Carey, M.2
Workman, J.L.3
-
35
-
-
80555156105
-
In embryonic stem cells, ZFP57/KAP1 recognize a methylated hexanucleotide to affect chromatin and DNA methylation of imprinting control regions
-
10.1016/j.molcel.2011.08.032 22055183
-
In embryonic stem cells, ZFP57/KAP1 recognize a methylated hexanucleotide to affect chromatin and DNA methylation of imprinting control regions. Quenneville S, Verde G, Corsinotti A, Kapopoulou A, Jakobsson J, Offner S, Baglivo I, Pedone PV, Grimaldi G, Riccio A, Trono D, Mol Cell 2011 44 361 372 10.1016/j.molcel.2011.08.032 22055183
-
(2011)
Mol Cell
, vol.44
, pp. 361-372
-
-
Quenneville, S.1
Verde, G.2
Corsinotti, A.3
Kapopoulou, A.4
Jakobsson, J.5
Offner, S.6
Baglivo, I.7
Pedone, P.V.8
Grimaldi, G.9
Riccio, A.10
Trono, D.11
-
36
-
-
84874771985
-
Dynamic readers for 5-(hydroxy)methylcytosine and its oxidized derivatives
-
10.1016/j.cell.2013.02.004 23434322
-
Dynamic readers for 5-(hydroxy)methylcytosine and its oxidized derivatives. Spruijt CG, Gnerlich F, Smits AH, Pfaffeneder T, Jansen PWTC, Bauer C, Münzel M, Wagner M, Müller M, Khan F, Eberl HC, Mensinga A, Brinkman AB, Lephikov K, Müller U, Walter J, Boelens R, van Ingen H, Leonhardt H, Carell T, Vermeulen M, Cell 2013 152 1146 1159 10.1016/j.cell.2013. 02.004 23434322
-
(2013)
Cell
, vol.152
, pp. 1146-1159
-
-
Spruijt, C.G.1
Gnerlich, F.2
Smits, A.H.3
Pfaffeneder, T.4
Jansen, P.5
Bauer, C.6
Münzel, M.7
Wagner, M.8
Müller, M.9
Khan, F.10
Eberl, H.C.11
Mensinga, A.12
Brinkman, A.B.13
Lephikov, K.14
Müller, U.15
Walter, J.16
Boelens, R.17
Van Ingen, H.18
Leonhardt, H.19
Carell, T.20
Vermeulen, M.21
more..
-
37
-
-
84870617693
-
Kaiso represses the cell cycle gene cyclin D1 via sequence-specific and methyl-CpG-dependent mechanisms
-
10.1371/journal.pone.0050398 23226276
-
Kaiso represses the cell cycle gene cyclin D1 via sequence-specific and methyl-CpG-dependent mechanisms. Donaldson NS, Pierre CC, Anstey MI, Robinson SC, Weerawardane SM, Daniel JM, PLoS One 2012 7 50398 10.1371/journal.pone. 0050398 23226276
-
(2012)
PLoS One
, vol.7
, pp. 550398
-
-
Donaldson, N.S.1
Pierre, C.C.2
Anstey, M.I.3
Robinson, S.C.4
Weerawardane, S.M.5
Daniel, J.M.6
-
38
-
-
84875505675
-
A common mode of recognition for methylated CpG
-
10.1016/j.tibs.2012.12.005 23352388
-
A common mode of recognition for methylated CpG. Liu Y, Zhang X, Blumenthal RM, Cheng X, Trends Biochem Sci 2013 38 177 183 10.1016/j.tibs.2012. 12.005 23352388
-
(2013)
Trends Biochem Sci
, vol.38
, pp. 177-183
-
-
Liu, Y.1
Zhang, X.2
Blumenthal, R.M.3
Cheng, X.4
|