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Volumn 153, Issue 2, 2013, Pages 480-492

Methylation-dependent and -independent genomic targeting principles of the mbd protein family

Author keywords

[No Author keywords available]

Indexed keywords

BIOTIN; METHYL CPG BINDING PROTEIN; METHYL CPG BINDING PROTEIN 2;

EID: 84876278080     PISSN: 00928674     EISSN: 10974172     Source Type: Journal    
DOI: 10.1016/j.cell.2013.03.011     Document Type: Article
Times cited : (268)

References (58)
  • 1
    • 0032830639 scopus 로고    scopus 로고
    • Rett syndrome is caused by mutations in X-linked MECP2, encoding methyl-CpG-binding protein 2
    • R.E. Amir, I.B. Van den Veyver, M. Wan, C.Q. Tran, U. Francke, and H.Y. Zoghbi Rett syndrome is caused by mutations in X-linked MECP2, encoding methyl-CpG-binding protein 2 Nat. Genet. 23 1999 185 188
    • (1999) Nat. Genet. , vol.23 , pp. 185-188
    • Amir, R.E.1    Van Den Veyver, I.B.2    Wan, M.3    Tran, C.Q.4    Francke, U.5    Zoghbi, H.Y.6
  • 2
    • 34250192881 scopus 로고    scopus 로고
    • Generation of a defined and uniform population of CNS progenitors and neurons from mouse embryonic stem cells
    • M. Bibel, J. Richter, E. Lacroix, and Y.-A. Barde Generation of a defined and uniform population of CNS progenitors and neurons from mouse embryonic stem cells Nat. Protoc. 2 2007 1034 1043
    • (2007) Nat. Protoc. , vol.2 , pp. 1034-1043
    • Bibel, M.1    Richter, J.2    Lacroix, E.3    Barde, Y.-A.4
  • 3
    • 0034634549 scopus 로고    scopus 로고
    • The minimal repression domain of MBD2b overlaps with the methyl-CpG-binding domain and binds directly to Sin3A
    • J. Boeke, O. Ammerpohl, S. Kegel, U. Moehren, and R. Renkawitz The minimal repression domain of MBD2b overlaps with the methyl-CpG-binding domain and binds directly to Sin3A J. Biol. Chem. 275 2000 34963 34967
    • (2000) J. Biol. Chem. , vol.275 , pp. 34963-34967
    • Boeke, J.1    Ammerpohl, O.2    Kegel, S.3    Moehren, U.4    Renkawitz, R.5
  • 4
    • 0026583975 scopus 로고
    • Repression of genes by DNA methylation depends on CpG density and promoter strength: Evidence for involvement of a methyl-CpG binding protein
    • J. Boyes, and A. Bird Repression of genes by DNA methylation depends on CpG density and promoter strength: evidence for involvement of a methyl-CpG binding protein EMBO J. 11 1992 327 333
    • (1992) EMBO J. , vol.11 , pp. 327-333
    • Boyes, J.1    Bird, A.2
  • 5
    • 45849105557 scopus 로고    scopus 로고
    • MeCP2, a key contributor to neurological disease, activates and represses transcription
    • M. Chahrour, S.Y. Jung, C. Shaw, X. Zhou, S.T.C. Wong, J. Qin, and H.Y. Zoghbi MeCP2, a key contributor to neurological disease, activates and represses transcription Science 320 2008 1224 1229
    • (2008) Science , vol.320 , pp. 1224-1229
    • Chahrour, M.1    Jung, S.Y.2    Shaw, C.3    Zhou, X.4    Wong, S.T.C.5    Qin, J.6    Zoghbi, H.Y.7
  • 12
    • 0031792779 scopus 로고    scopus 로고
    • Identification and characterization of a family of mammalian methyl-CpG binding proteins
    • B. Hendrich, and A. Bird Identification and characterization of a family of mammalian methyl-CpG binding proteins Mol. Cell. Biol. 18 1998 6538 6547
    • (1998) Mol. Cell. Biol. , vol.18 , pp. 6538-6547
    • Hendrich, B.1    Bird, A.2
  • 13
    • 0035868824 scopus 로고    scopus 로고
    • Closely related proteins MBD2 and MBD3 play distinctive but interacting roles in mouse development
    • B. Hendrich, J. Guy, B. Ramsahoye, V.A. Wilson, and A. Bird Closely related proteins MBD2 and MBD3 play distinctive but interacting roles in mouse development Genes Dev. 15 2001 710 723
    • (2001) Genes Dev. , vol.15 , pp. 710-723
    • Hendrich, B.1    Guy, J.2    Ramsahoye, B.3    Wilson, V.A.4    Bird, A.5
  • 14
    • 77954362183 scopus 로고    scopus 로고
    • Examination of the specificity of DNA methylation profiling techniques towards 5-methylcytosine and 5-hydroxymethylcytosine
    • S.-G. Jin, S. Kadam, and G.P. Pfeifer Examination of the specificity of DNA methylation profiling techniques towards 5-methylcytosine and 5-hydroxymethylcytosine Nucleic Acids Res. 38 2010 e125
    • (2010) Nucleic Acids Res. , vol.38 , pp. 125
    • Jin, S.-G.1    Kadam, S.2    Pfeifer, G.P.3
  • 15
    • 1842505317 scopus 로고    scopus 로고
    • Mbd1 is recruited to both methylated and nonmethylated CpGs via distinct DNA binding domains
    • H.F. Jørgensen, I. Ben-Porath, and A.P. Bird Mbd1 is recruited to both methylated and nonmethylated CpGs via distinct DNA binding domains Mol. Cell. Biol. 24 2004 3387 3395
    • (2004) Mol. Cell. Biol. , vol.24 , pp. 3387-3395
    • Jørgensen, H.F.1    Ben-Porath, I.2    Bird, A.P.3
  • 17
    • 0026747761 scopus 로고
    • Purification, sequence, and cellular localization of a novel chromosomal protein that binds to methylated DNA
    • J.D. Lewis, R.R. Meehan, W.J. Henzel, I. Maurer-Fogy, P. Jeppesen, F. Klein, and A. Bird Purification, sequence, and cellular localization of a novel chromosomal protein that binds to methylated DNA Cell 69 1992 905 914
    • (1992) Cell , vol.69 , pp. 905-914
    • Lewis, J.D.1    Meehan, R.R.2    Henzel, W.J.3    Maurer-Fogy, I.4    Jeppesen, P.5    Klein, F.6    Bird, A.7
  • 18
    • 80054994283 scopus 로고    scopus 로고
    • Identification of genetic elements that autonomously determine DNA methylation states
    • F. Lienert, C. Wirbelauer, I. Som, A. Dean, F. Mohn, and D. Schübeler Identification of genetic elements that autonomously determine DNA methylation states Nat. Genet. 43 2011 1091 1097
    • (2011) Nat. Genet. , vol.43 , pp. 1091-1097
    • Lienert, F.1    Wirbelauer, C.2    Som, I.3    Dean, A.4    Mohn, F.5    Schübeler, D.6
  • 20
    • 59849121326 scopus 로고    scopus 로고
    • The methyl-CpG binding proteins Mecp2, Mbd2 and Kaiso are dispensable for mouse embryogenesis, but play a redundant function in neural differentiation
    • I. Martín Caballero, J. Hansen, D. Leaford, S. Pollard, and B.D. Hendrich The methyl-CpG binding proteins Mecp2, Mbd2 and Kaiso are dispensable for mouse embryogenesis, but play a redundant function in neural differentiation PLoS ONE 4 2009 e4315
    • (2009) PLoS ONE , vol.4 , pp. 4315
    • Martín Caballero, I.1    Hansen, J.2    Leaford, D.3    Pollard, S.4    Hendrich, B.D.5
  • 21
    • 0024342686 scopus 로고
    • Identification of a mammalian protein that binds specifically to DNA containing methylated CpGs
    • R.R. Meehan, J.D. Lewis, S. McKay, E.L. Kleiner, and A.P. Bird Identification of a mammalian protein that binds specifically to DNA containing methylated CpGs Cell 58 1989 499 507
    • (1989) Cell , vol.58 , pp. 499-507
    • Meehan, R.R.1    Lewis, J.D.2    McKay, S.3    Kleiner, E.L.4    Bird, A.P.5
  • 22
    • 84871563384 scopus 로고    scopus 로고
    • MeCP2 binds to 5hmC enriched within active genes and accessible chromatin in the nervous system
    • M. Mellén, P. Ayata, S. Dewell, S. Kriaucionis, and N. Heintz MeCP2 binds to 5hmC enriched within active genes and accessible chromatin in the nervous system Cell 151 2012 1417 1430
    • (2012) Cell , vol.151 , pp. 1417-1430
    • Mellén, M.1    Ayata, P.2    Dewell, S.3    Kriaucionis, S.4    Heintz, N.5
  • 23
    • 51649129596 scopus 로고    scopus 로고
    • Lineage-specific polycomb targets and de novo DNA methylation define restriction and potential of neuronal progenitors
    • F. Mohn, M. Weber, M. Rebhan, T.C. Roloff, J. Richter, M.B. Stadler, M. Bibel, and D. Schübeler Lineage-specific polycomb targets and de novo DNA methylation define restriction and potential of neuronal progenitors Mol. Cell 30 2008 755 766
    • (2008) Mol. Cell , vol.30 , pp. 755-766
    • Mohn, F.1    Weber, M.2    Rebhan, M.3    Roloff, T.C.4    Richter, J.5    Stadler, M.B.6    Bibel, M.7    Schübeler, D.8
  • 24
    • 0342437491 scopus 로고    scopus 로고
    • MeCP2 is a transcriptional repressor with abundant binding sites in genomic chromatin
    • X. Nan, F.J. Campoy, and A. Bird MeCP2 is a transcriptional repressor with abundant binding sites in genomic chromatin Cell 88 1997 471 481
    • (1997) Cell , vol.88 , pp. 471-481
    • Nan, X.1    Campoy, F.J.2    Bird, A.3
  • 25
    • 0032574977 scopus 로고    scopus 로고
    • Transcriptional repression by the methyl-CpG-binding protein MeCP2 involves a histone deacetylase complex
    • X. Nan, H.H. Ng, C.A. Johnson, C.D. Laherty, B.M. Turner, R.N. Eisenman, and A. Bird Transcriptional repression by the methyl-CpG-binding protein MeCP2 involves a histone deacetylase complex Nature 393 1998 386 389
    • (1998) Nature , vol.393 , pp. 386-389
    • Nan, X.1    Ng, H.H.2    Johnson, C.A.3    Laherty, C.D.4    Turner, B.M.5    Eisenman, R.N.6    Bird, A.7
  • 27
    • 0035906936 scopus 로고    scopus 로고
    • Solution structure of the methyl-CpG binding domain of human MBD1 in complex with methylated DNA
    • I. Ohki, N. Shimotake, N. Fujita, J. Jee, T. Ikegami, M. Nakao, and M. Shirakawa Solution structure of the methyl-CpG binding domain of human MBD1 in complex with methylated DNA Cell 105 2001 487 497
    • (2001) Cell , vol.105 , pp. 487-497
    • Ohki, I.1    Shimotake, N.2    Fujita, N.3    Jee, J.4    Ikegami, T.5    Nakao, M.6    Shirakawa, M.7
  • 30
    • 0037144441 scopus 로고    scopus 로고
    • The mCpG-binding domain of human MBD3 does not bind to mCpG but interacts with NuRD/Mi2 components HDAC1 and MTA2
    • M. Saito, and F. Ishikawa The mCpG-binding domain of human MBD3 does not bind to mCpG but interacts with NuRD/Mi2 components HDAC1 and MTA2 J. Biol. Chem. 277 2002 35434 35439
    • (2002) J. Biol. Chem. , vol.277 , pp. 35434-35439
    • Saito, M.1    Ishikawa, F.2
  • 31
    • 4344685735 scopus 로고    scopus 로고
    • Methyl-CpG binding protein MBD1 couples histone H3 methylation at lysine 9 by SETDB1 to DNA replication and chromatin assembly
    • S.A. Sarraf, and I. Stancheva Methyl-CpG binding protein MBD1 couples histone H3 methylation at lysine 9 by SETDB1 to DNA replication and chromatin assembly Mol. Cell 15 2004 595 605
    • (2004) Mol. Cell , vol.15 , pp. 595-605
    • Sarraf, S.A.1    Stancheva, I.2
  • 32
    • 80052016907 scopus 로고    scopus 로고
    • Solution structure and dynamic analysis of chicken MBD2 methyl binding domain bound to a target-methylated DNA sequence
    • J.N. Scarsdale, H.D. Webb, G.D. Ginder, and D.C. Williams Jr. Solution structure and dynamic analysis of chicken MBD2 methyl binding domain bound to a target-methylated DNA sequence Nucleic Acids Res. 39 2011 6741 6752
    • (2011) Nucleic Acids Res. , vol.39 , pp. 6741-6752
    • Scarsdale, J.N.1    Webb, H.D.2    Ginder, G.D.3    Williams Jr., D.C.4
  • 33
    • 84990251443 scopus 로고    scopus 로고
    • A temporal threshold for formaldehyde crosslinking and fixation
    • L. Schmiedeberg, P. Skene, A. Deaton, and A. Bird A temporal threshold for formaldehyde crosslinking and fixation PLoS ONE 4 2009 e4636
    • (2009) PLoS ONE , vol.4 , pp. 4636
    • Schmiedeberg, L.1    Skene, P.2    Deaton, A.3    Bird, A.4
  • 38
    • 0037180492 scopus 로고    scopus 로고
    • Transcriptional profiling of a mouse model for Rett syndrome reveals subtle transcriptional changes in the brain
    • M. Tudor, S. Akbarian, R.Z. Chen, and R. Jaenisch Transcriptional profiling of a mouse model for Rett syndrome reveals subtle transcriptional changes in the brain Proc. Natl. Acad. Sci. USA 99 2002 15536 15541
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 15536-15541
    • Tudor, M.1    Akbarian, S.2    Chen, R.Z.3    Jaenisch, R.4
  • 41
    • 84455167621 scopus 로고    scopus 로고
    • Mbd3/NURD complex regulates expression of 5-hydroxymethylcytosine marked genes in embryonic stem cells
    • O. Yildirim, R. Li, J.-H. Hung, P.B. Chen, X. Dong, L.-S. Ee, Z. Weng, O.J. Rando, and T.G. Fazzio Mbd3/NURD complex regulates expression of 5-hydroxymethylcytosine marked genes in embryonic stem cells Cell 147 2011 1498 1510
    • (2011) Cell , vol.147 , pp. 1498-1510
    • Yildirim, O.1    Li, R.2    Hung, J.-H.3    Chen, P.B.4    Dong, X.5    Ee, L.-S.6    Weng, Z.7    Rando, O.J.8    Fazzio, T.G.9
  • 43
    • 0033180082 scopus 로고    scopus 로고
    • Analysis of the NuRD subunits reveals a histone deacetylase core complex and a connection with DNA methylation
    • Y. Zhang, H.H. Ng, H. Erdjument-Bromage, P. Tempst, A. Bird, and D. Reinberg Analysis of the NuRD subunits reveals a histone deacetylase core complex and a connection with DNA methylation Genes Dev. 13 1999 1924 1935
    • (1999) Genes Dev. , vol.13 , pp. 1924-1935
    • Zhang, Y.1    Ng, H.H.2    Erdjument-Bromage, H.3    Tempst, P.4    Bird, A.5    Reinberg, D.6
  • 45
    • 44649117905 scopus 로고    scopus 로고
    • Integration of external signaling pathways with the core transcriptional network in embryonic stem cells
    • X. Chen, H. Xu, P. Yuan, F. Fang, M. Huss, V.B. Vega, E. Wong, Y.L. Orlov, W. Zhang, and J. Jiang Integration of external signaling pathways with the core transcriptional network in embryonic stem cells Cell 133 2008 1106 1117
    • (2008) Cell , vol.133 , pp. 1106-1117
    • Chen, X.1    Xu, H.2    Yuan, P.3    Fang, F.4    Huss, M.5    Vega, V.B.6    Wong, E.7    Orlov, Y.L.8    Zhang, W.9    Jiang, J.10
  • 50
    • 79959853781 scopus 로고    scopus 로고
    • Genomic prevalence of heterochromatic H3K9me2 and transcription do not discriminate pluripotent from terminally differentiated cells
    • F. Lienert, F. Mohn, V.K. Tiwari, T. Baubec, T.C. Roloff, D. Gaidatzis, M.B. Stadler, and D. Schübeler Genomic prevalence of heterochromatic H3K9me2 and transcription do not discriminate pluripotent from terminally differentiated cells PLoS Genet. 7 2011 e1002090
    • (2011) PLoS Genet. , vol.7 , pp. 1002090
    • Lienert, F.1    Mohn, F.2    Tiwari, V.K.3    Baubec, T.4    Roloff, T.C.5    Gaidatzis, D.6    Stadler, M.B.7    Schübeler, D.8
  • 55
    • 34047116826 scopus 로고    scopus 로고
    • Distribution, silencing potential and evolutionary impact of promoter DNA methylation in the human genome
    • M. Weber, I. Hellmann, M.B. Stadler, L. Ramos, S. Pääbo, M. Rebhan, and D. Schübeler Distribution, silencing potential and evolutionary impact of promoter DNA methylation in the human genome Nat. Genet. 39 2007 457 466
    • (2007) Nat. Genet. , vol.39 , pp. 457-466
    • Weber, M.1    Hellmann, I.2    Stadler, M.B.3    Ramos, L.4    Pääbo, S.5    Rebhan, M.6    Schübeler, D.7
  • 57
    • 79956292024 scopus 로고    scopus 로고
    • Dual functions of Tet1 in transcriptional regulation in mouse embryonic stem cells
    • H. Wu, A.C. D'Alessio, S. Ito, K. Xia, Z. Wang, K. Cui, K. Zhao, Y.E. Sun, and Y. Zhang Dual functions of Tet1 in transcriptional regulation in mouse embryonic stem cells Nature 473 2011 389 393
    • (2011) Nature , vol.473 , pp. 389-393
    • Wu, H.1    D'Alessio, A.C.2    Ito, S.3    Xia, K.4    Wang, Z.5    Cui, K.6    Zhao, K.7    Sun, Y.E.8    Zhang, Y.9
  • 58
    • 70350686165 scopus 로고    scopus 로고
    • Eset partners with Oct4 to restrict extraembryonic trophoblast lineage potential in embryonic stem cells
    • P. Yuan, J. Han, G. Guo, Y.L. Orlov, M. Huss, Y.H. Loh, L.P. Yaw, P. Robson, B. Lim, and H.H. Ng Eset partners with Oct4 to restrict extraembryonic trophoblast lineage potential in embryonic stem cells Genes Dev. 23 2009 2507 2520
    • (2009) Genes Dev. , vol.23 , pp. 2507-2520
    • Yuan, P.1    Han, J.2    Guo, G.3    Orlov, Y.L.4    Huss, M.5    Loh, Y.H.6    Yaw, L.P.7    Robson, P.8    Lim, B.9    Ng, H.H.10


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.