-
1
-
-
38849088221
-
Diffusion of glycerol through Escherichia coli aquaglyceroporin GlpF
-
Hénin J, Tajkhorshid E, Schulten K, Chipot C. Diffusion of glycerol through Escherichia coli aquaglyceroporin GlpF. Biophys J 2008;94:832-840.
-
(2008)
Biophys J
, vol.94
, pp. 832-840
-
-
Hénin, J.1
Tajkhorshid, E.2
Schulten, K.3
Chipot, C.4
-
2
-
-
58049154645
-
Water as a biomolecule
-
Ball P. Water as a biomolecule. Chem Phys Chem 2008;9:2677-2685.
-
(2008)
Chem Phys Chem
, vol.9
, pp. 2677-2685
-
-
Ball, P.1
-
3
-
-
33750286994
-
Opinion-Do we underestimate the importance of water in cell biology?
-
Chaplin M. Opinion-Do we underestimate the importance of water in cell biology? Nat RevMol Cell Biol 2006;7:861-866.
-
(2006)
Nat RevMol Cell Biol
, vol.7
, pp. 861-866
-
-
Chaplin, M.1
-
4
-
-
33745032291
-
Water mediation in protein folding and molecular recognition
-
Levy Y, Onuchic JN. Water mediation in protein folding and molecular recognition. Annu Rev Biophys Biomol Struct 2006;35:389-415.
-
(2006)
Annu Rev Biophys Biomol Struct
, vol.35
, pp. 389-415
-
-
Levy, Y.1
Onuchic, J.N.2
-
5
-
-
78650190746
-
Force-clamp spectroscopy of single proteins
-
In: Gräslund A, Rigler R, Widengren J, editors, Heidelberg, Germany: Springer
-
Fernandez JM, Garcia-Manyes S, Dougan L. Force-clamp spectroscopy of single proteins. In: Gräslund A, Rigler R, Widengren J, editors. Single Molecule Spectroscopy in Chemistry, Physics and Biology. Nobel Symposium: Springer Series in Chemical Physics. Heidelberg, Germany: Springer; 2010.
-
(2010)
Single Molecule Spectroscopy in Chemistry, Physics and Biology
-
-
Fernandez, J.M.1
Garcia-Manyes, S.2
Dougan, L.3
-
6
-
-
79955534260
-
ClpX(P) generates mechanical force to unfold and translocate its protein substrates
-
Maillard RA, Chistol G, Sen M, Righini M, Tan J, Kaiser CM, Hodges C, Martin A, Bustamante C. ClpX(P) generates mechanical force to unfold and translocate its protein substrates. Cell 2011;145:459-469.
-
(2011)
Cell
, vol.145
, pp. 459-469
-
-
Maillard, R.A.1
Chistol, G.2
Sen, M.3
Righini, M.4
Tan, J.5
Kaiser, C.M.6
Hodges, C.7
Martin, A.8
Bustamante, C.9
-
7
-
-
79955544293
-
Protease power strokes force proteins to unfold
-
Alegre-Cebollada J, Kosuri P, Fernandez JM. Protease power strokes force proteins to unfold. Cell 2011;145:339-340.
-
(2011)
Cell
, vol.145
, pp. 339-340
-
-
Alegre-Cebollada, J.1
Kosuri, P.2
Fernandez, J.M.3
-
8
-
-
79953888421
-
Single-molecule protein unfolding and translocation by an ATP-fueled proteolytic machine
-
Aubin-Tam M-E, Olivares AO, Sauer RT, Baker TA, Lang MJ. Single-molecule protein unfolding and translocation by an ATP-fueled proteolytic machine. Cell 2011;145:257-267.
-
(2011)
Cell
, vol.145
, pp. 257-267
-
-
Aubin-Tam, M.-E.1
Olivares, A.O.2
Sauer, R.T.3
Baker, T.A.4
Lang, M.J.5
-
9
-
-
59149101169
-
Cell biology. The force is with us
-
Schwartz MA. Cell biology. The force is with us. Science 2009;323:588-589.
-
(2009)
Science
, vol.323
, pp. 588-589
-
-
Schwartz, M.A.1
-
10
-
-
0033617534
-
Chaperonin function: folding by forced unfolding
-
Shtilerman M, Lorimer GH, Englander SW. Chaperonin function: folding by forced unfolding. Science 1999;284:822-825.
-
(1999)
Science
, vol.284
, pp. 822-825
-
-
Shtilerman, M.1
Lorimer, G.H.2
Englander, S.W.3
-
11
-
-
0037010171
-
Structure and function of a protein folding machine: the eukaryotic cytosolic chaperonin CCT
-
Valpuesta JM, Martin-Benito J, Gomez-Puertas P, Carrascosa JL, Willison KR. Structure and function of a protein folding machine: the eukaryotic cytosolic chaperonin CCT. FEBS Lett 2002;529:11-16.
-
(2002)
FEBS Lett
, vol.529
, pp. 11-16
-
-
Valpuesta, J.M.1
Martin-Benito, J.2
Gomez-Puertas, P.3
Carrascosa, J.L.4
Willison, K.R.5
-
12
-
-
0028824480
-
Titins-giant proteins in charge of muscle ultrastructure and elasticity
-
Labeit S, Kolmerer B. Titins-giant proteins in charge of muscle ultrastructure and elasticity. Science 1995;270:293-296.
-
(1995)
Science
, vol.270
, pp. 293-296
-
-
Labeit, S.1
Kolmerer, B.2
-
13
-
-
0036443942
-
PEVK domain of titin: an entropic spring with actin-binding properties
-
Linke WA, Kulke M, Li HB, Fujita-Becker S, Neagoe C, Manstein DJ, Gautel M, Fernandez JM. PEVK domain of titin: an entropic spring with actin-binding properties. J Struct Biol 2002;137:194-205.
-
(2002)
J Struct Biol
, vol.137
, pp. 194-205
-
-
Linke, W.A.1
Kulke, M.2
Li, H.B.3
Fujita-Becker, S.4
Neagoe, C.5
Manstein, D.J.6
Gautel, M.7
Fernandez, J.M.8
-
14
-
-
0036343904
-
The protein import motor of mitochondria
-
Neupert W, Brunner M. The protein import motor of mitochondria. Nat RevMol Cell Biol 2002;3:555-565.
-
(2002)
Nat RevMol Cell Biol
, vol.3
, pp. 555-565
-
-
Neupert, W.1
Brunner, M.2
-
16
-
-
25444512161
-
Direct observation of the three-state folding of a single protein molecule
-
Bustamante C, Cecconi C, Shank EA, Marqusee S. Direct observation of the three-state folding of a single protein molecule. Science 2005;309:2057-2060.
-
(2005)
Science
, vol.309
, pp. 2057-2060
-
-
Bustamante, C.1
Cecconi, C.2
Shank, E.A.3
Marqusee, S.4
-
18
-
-
68949113917
-
Single Molecule Dynamics in Life Science
-
Germany: Wiley-VCH
-
Dougan L, Brujic J, Fernandez JM. Single Molecule Dynamics in Life Science. Germany: Wiley-VCH; 2008.
-
(2008)
-
-
Dougan, L.1
Brujic, J.2
Fernandez, J.M.3
-
19
-
-
0031011695
-
Reversible unfolding of individual titin immunoglobulin domains by AFM
-
Rief M, Gautel M, Oesterhelt F, Fernandez JM, Gaub HE. Reversible unfolding of individual titin immunoglobulin domains by AFM. Science 1997;276:1109-1112.
-
(1997)
Science
, vol.276
, pp. 1109-1112
-
-
Rief, M.1
Gautel, M.2
Oesterhelt, F.3
Fernandez, J.M.4
Gaub, H.E.5
-
20
-
-
0033214502
-
The study of protein mechanics with the atomic force microscope
-
Fisher TE, Oberhauser AF, Carrion-Vazquez M, Marszalek PE, Fernandez JM. The study of protein mechanics with the atomic force microscope. Trends Biochem Sci 1999;24:379-384.
-
(1999)
Trends Biochem Sci
, vol.24
, pp. 379-384
-
-
Fisher, T.E.1
Oberhauser, A.F.2
Carrion-Vazquez, M.3
Marszalek, P.E.4
Fernandez, J.M.5
-
21
-
-
0037194788
-
Reverse engineering of the giant muscle protein titin
-
Li HB, Linke WA, Oberhauser AF, Carrion-Vazquez M, Kerkviliet JG, Lu H, Marszalek PE, Fernandez JM. Reverse engineering of the giant muscle protein titin. Nature 2002;418:998-1002.
-
(2002)
Nature
, vol.418
, pp. 998-1002
-
-
Li, H.B.1
Linke, W.A.2
Oberhauser, A.F.3
Carrion-Vazquez, M.4
Kerkviliet, J.G.5
Lu, H.6
Marszalek, P.E.7
Fernandez, J.M.8
-
22
-
-
0032539909
-
The ubiquitin-proteasome pathway: the complexity and myriad functions of proteins death
-
Ciechanover A, Schwartz AL. The ubiquitin-proteasome pathway: the complexity and myriad functions of proteins death. Proc Natl Acad Sci USA 1998;95:2727-2730.
-
(1998)
Proc Natl Acad Sci USA
, vol.95
, pp. 2727-2730
-
-
Ciechanover, A.1
Schwartz, A.L.2
-
23
-
-
23244441268
-
Mechanically unfolding the small, topologically simple protein L
-
Brockwell DJ, Beddard GS, Paci E, West DK, Olmsted PD, Smith DA, Radford SE. Mechanically unfolding the small, topologically simple protein L. Biophys J 2005;89:506-519.
-
(2005)
Biophys J
, vol.89
, pp. 506-519
-
-
Brockwell, D.J.1
Beddard, G.S.2
Paci, E.3
West, D.K.4
Olmsted, P.D.5
Smith, D.A.6
Radford, S.E.7
-
24
-
-
0042508740
-
The mechanical stability of ubiquitin is linkage dependent
-
Carrion-Vazquez M, Li HB, Lu H, Marszalek PE, Oberhauser AF, Fernandez JM. The mechanical stability of ubiquitin is linkage dependent. Nat Struct Biol 2003;10:738-743.
-
(2003)
Nat Struct Biol
, vol.10
, pp. 738-743
-
-
Carrion-Vazquez, M.1
Li, H.B.2
Lu, H.3
Marszalek, P.E.4
Oberhauser, A.F.5
Fernandez, J.M.6
-
25
-
-
0033616713
-
Mechanical and chemical unfolding of a single protein: a comparison
-
Carrion-Vazquez M, Oberhauser AF, Fowler SB, Marszalek PE, Broedel SE, Clarke J, Fernandez JM. Mechanical and chemical unfolding of a single protein: a comparison. Proc Natl Acad Sci USA 1999;96:3694-3699.
-
(1999)
Proc Natl Acad Sci USA
, vol.96
, pp. 3694-3699
-
-
Carrion-Vazquez, M.1
Oberhauser, A.F.2
Fowler, S.B.3
Marszalek, P.E.4
Broedel, S.E.5
Clarke, J.6
Fernandez, J.M.7
-
26
-
-
33748028865
-
Cysteine engineering of polyproteins for single-molecule force spectroscopy
-
Dietz H, Bertz M, Schlierf M, Berkemeier F, Bornschlögl T, Junker JP, Rief M. Cysteine engineering of polyproteins for single-molecule force spectroscopy. Nat Protoc 2006;1:80-84.
-
(2006)
Nat Protoc
, vol.1
, pp. 80-84
-
-
Dietz, H.1
Bertz, M.2
Schlierf, M.3
Berkemeier, F.4
Bornschlögl, T.5
Junker, J.P.6
Rief, M.7
-
28
-
-
33846666463
-
Polyprotein of GB1 is an ideal artificial elastomeric protein
-
Cao Y, Li HB. Polyprotein of GB1 is an ideal artificial elastomeric protein. Nat Mater 2007;6:109-114.
-
(2007)
Nat Mater
, vol.6
, pp. 109-114
-
-
Cao, Y.1
Li, H.B.2
-
29
-
-
34547094880
-
Designing an extracellular matrix protein with enhanced mechanical stability
-
Ng SP, Billings KS, Ohashi T, Allen MD, Best RB, Randles LG, Erickson HP, Clarke J. Designing an extracellular matrix protein with enhanced mechanical stability. Proc Natl Acad Sci USA 2007;104:9633-9637.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 9633-9637
-
-
Ng, S.P.1
Billings, K.S.2
Ohashi, T.3
Allen, M.D.4
Best, R.B.5
Randles, L.G.6
Erickson, H.P.7
Clarke, J.8
-
30
-
-
17844377025
-
Response to comment on "Forceclamp spectroscopy monitors the folding trajectory of a single protein"
-
Brujic J, Fernandez JM. Response to comment on "Forceclamp spectroscopy monitors the folding trajectory of a single protein". Science 2005;308:498.
-
(2005)
Science
, vol.308
, pp. 498
-
-
Brujic, J.1
Fernandez, J.M.2
-
31
-
-
34848909232
-
Force-clamp spectroscopy of single protein monomers reveals the individual unfolding and folding pathways of 127 and ubiquitin
-
Garcia-Manyes S, Brujic J, Fernandez JM. Force-clamp spectroscopy of single protein monomers reveals the individual unfolding and folding pathways of 127 and ubiquitin. Biophys J 2007;93:2436-2446.
-
(2007)
Biophys J
, vol.93
, pp. 2436-2446
-
-
Garcia-Manyes, S.1
Brujic, J.2
Fernandez, J.M.3
-
32
-
-
0033669185
-
Point mutations alter the mechanical stability of immunoglobulin modules
-
Li HB, Carrion-Vazquez M, Oberhauser AF, Marszalek PE, Fernandez JM. Point mutations alter the mechanical stability of immunoglobulin modules. Nat Struct Biol 2000;7:1117-1120.
-
(2000)
Nat Struct Biol
, vol.7
, pp. 1117-1120
-
-
Li, H.B.1
Carrion-Vazquez, M.2
Oberhauser, A.F.3
Marszalek, P.E.4
Fernandez, J.M.5
-
33
-
-
10044247452
-
Mechanical unfolding intermediates observed by single-molecule force spectroscopy in a fibronectin type III module
-
Li LW, Huang HHL, Badilla CL, Fernandez JM. Mechanical unfolding intermediates observed by single-molecule force spectroscopy in a fibronectin type III module. J Mol Biol 2005;345:817-826.
-
(2005)
J Mol Biol
, vol.345
, pp. 817-826
-
-
Li, L.W.1
Huang, H.H.L.2
Badilla, C.L.3
Fernandez, J.M.4
-
34
-
-
0037468835
-
Hidden complexity in the mechanical properties of titin
-
Williams PM, Fowler SB, Best RB, Toca-Herrera JL, Scott KA, Steward A, Clarke J. Hidden complexity in the mechanical properties of titin. Nature 2003;422:446-449.
-
(2003)
Nature
, vol.422
, pp. 446-449
-
-
Williams, P.M.1
Fowler, S.B.2
Best, R.B.3
Toca-Herrera, J.L.4
Scott, K.A.5
Steward, A.6
Clarke, J.7
-
35
-
-
31944436148
-
Protein structure by mechanical triangulation
-
Dietz H, Rief M. Protein structure by mechanical triangulation. Proc Natl Acad Sci USA 2006;103:1244-1247.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 1244-1247
-
-
Dietz, H.1
Rief, M.2
-
36
-
-
69149105917
-
Single homopolypeptide chains collapse into mechanically rigid conformations
-
Dougan L, Li JY, Badilla CL, Berne BJ, Fernandez JM. Single homopolypeptide chains collapse into mechanically rigid conformations. Proc Natl Acad Sci USA 2009;106:12605-12610.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 12605-12610
-
-
Dougan, L.1
Li, J.Y.2
Badilla, C.L.3
Berne, B.J.4
Fernandez, J.M.5
-
37
-
-
33845980623
-
Mechanical unfolding pathways of the enhanced yellow fluorescent protein revealed by single molecule force spectroscopy
-
Perez-Jimenez R, Garcia-Manyes S, Ainavarapu SRK, Fernandez JM. Mechanical unfolding pathways of the enhanced yellow fluorescent protein revealed by single molecule force spectroscopy. J Biol Chem 2006;281:40010-40014.
-
(2006)
J Biol Chem
, vol.281
, pp. 40010-40014
-
-
Perez-Jimenez, R.1
Garcia-Manyes, S.2
Ainavarapu, S.R.K.3
Fernandez, J.M.4
-
38
-
-
70349233748
-
Identification of a mechanical rheostat in the hydrophobic core of protein L
-
Sadler DP, Petrik E, Taniguchi Y, Pullen JR, Kawakami M, Radford SE, Brockwell DJ. Identification of a mechanical rheostat in the hydrophobic core of protein L. J Mol Biol 2009;393:237-248.
-
(2009)
J Mol Biol
, vol.393
, pp. 237-248
-
-
Sadler, D.P.1
Petrik, E.2
Taniguchi, Y.3
Pullen, J.R.4
Kawakami, M.5
Radford, S.E.6
Brockwell, D.J.7
-
39
-
-
56049108131
-
Stabilization provided by neighboring strands is critical for the mechanical stability of proteins
-
Sharma D, Feng G, Khor D, Genchev GZ, Lu H, Li HB. Stabilization provided by neighboring strands is critical for the mechanical stability of proteins. Biophys J 2008;95:3935-3942.
-
(2008)
Biophys J
, vol.95
, pp. 3935-3942
-
-
Sharma, D.1
Feng, G.2
Khor, D.3
Genchev, G.Z.4
Lu, H.5
Li, H.B.6
-
40
-
-
27744581873
-
Ligand binding modulates the mechanical stability of dihydrofolate reductase (DHFR)
-
Koti ASR, Li L, Badilla CL, Fernandez JM. Ligand binding modulates the mechanical stability of dihydrofolate reductase (DHFR). Biophys J 2005;89:3337-3344.
-
(2005)
Biophys J
, vol.89
, pp. 3337-3344
-
-
Koti, A.S.R.1
Li, L.2
Badilla, C.L.3
Fernandez, J.M.4
-
42
-
-
67649774600
-
Direct observation of an ensemble of stable collapsed states in the mechanical folding of ubiquitin
-
Garcia-Manyes S, Dougan L, Badilla CL, Brujic J, Fernandez JM. Direct observation of an ensemble of stable collapsed states in the mechanical folding of ubiquitin. Proc Natl Acad Sci USA 2009;106:10534-10539.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 10534-10539
-
-
Garcia-Manyes, S.1
Dougan, L.2
Badilla, C.L.3
Brujic, J.4
Fernandez, J.M.5
-
43
-
-
79952273128
-
Contrasting the individual reactive pathways in protein unfolding and disulfide bond reduction observed within a single protein
-
Garcia-Manyes S, Kuo TL, Fernandez JM. Contrasting the individual reactive pathways in protein unfolding and disulfide bond reduction observed within a single protein. J Am Chem Soc 2011;133:3104-3113.
-
(2011)
J Am Chem Soc
, vol.133
, pp. 3104-3113
-
-
Garcia-Manyes, S.1
Kuo, T.L.2
Fernandez, J.M.3
-
44
-
-
68249144762
-
Diversity of chemical mechanisms in thioredoxin catalysis revealed by single-molecule force spectroscopy
-
Perez-Jimenez R, Li JY, Kosuri P, Sanchez-Romero I, Wiita AP, Rodriguez-Larrea D, Chueca A, Holmgren A, Miranda-Vizuete A, Becker K, Cho SH, Beckwith J, Gelhaye E, Jacquot JP, Gaucher E, Sanchez-Ruiz JM, Berne BJ, Fernandez JM. Diversity of chemical mechanisms in thioredoxin catalysis revealed by single-molecule force spectroscopy. Nat Struct Mol Biol 2009;16:890-896.
-
(2009)
Nat Struct Mol Biol
, vol.16
, pp. 890-896
-
-
Perez-Jimenez, R.1
Li, J.Y.2
Kosuri, P.3
Sanchez-Romero, I.4
Wiita, A.P.5
Rodriguez-Larrea, D.6
Chueca, A.7
Holmgren, A.8
Miranda-Vizuete, A.9
Becker, K.10
Cho, S.H.11
Beckwith, J.12
Gelhaye, E.13
Jacquot, J.P.14
Gaucher, E.15
Sanchez-Ruiz, J.M.16
Berne, B.J.17
Fernandez, J.M.18
-
45
-
-
0018101150
-
Models for specific adhesion of cells to cells
-
Bell GI. Models for specific adhesion of cells to cells. Science 1978;200:618-627.
-
(1978)
Science
, vol.200
, pp. 618-627
-
-
Bell, G.I.1
-
46
-
-
0031001349
-
Dynamic strength of molecular adhesion bonds
-
Evans E, Ritchie K. Dynamic strength of molecular adhesion bonds. Biophys J 1997;72:1541-1555.
-
(1997)
Biophys J
, vol.72
, pp. 1541-1555
-
-
Evans, E.1
Ritchie, K.2
-
47
-
-
0141816804
-
Beyond the conventional description of dynamic force spectroscopy of adhesion bonds
-
Dudko OK, Filippov AE, Klafter J, Urbakh M. Beyond the conventional description of dynamic force spectroscopy of adhesion bonds. Proc Natl Acad Sci USA 2003;100:11378-11381.
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 11378-11381
-
-
Dudko, O.K.1
Filippov, A.E.2
Klafter, J.3
Urbakh, M.4
-
48
-
-
33645004171
-
Intrinsic rates and activation free energies from single-molecule pulling experiments
-
Dudko OK, Hummer G, Szabo A. Intrinsic rates and activation free energies from single-molecule pulling experiments. Phys Rev Lett 2006;96:108101-108104.
-
(2006)
Phys Rev Lett
, vol.96
, pp. 108101-108104
-
-
Dudko, O.K.1
Hummer, G.2
Szabo, A.3
-
49
-
-
57349124448
-
Theory, analysis, and interpretation of single-molecule force spectroscopy experiments
-
Dudko OK, Hummer G, Szabo A. Theory, analysis, and interpretation of single-molecule force spectroscopy experiments. Proc Natl Acad Sci USA 2008;105:15755-15760.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 15755-15760
-
-
Dudko, O.K.1
Hummer, G.2
Szabo, A.3
-
50
-
-
78649690120
-
Hopping around an entropic barrier created by force
-
Berkovich R, Garcia-Manyes S, Klafter J, Urbakh M, Fernandez JM. Hopping around an entropic barrier created by force. Biochem Biophys Res Commun 2010;403:133-137.
-
(2010)
Biochem Biophys Res Commun
, vol.403
, pp. 133-137
-
-
Berkovich, R.1
Garcia-Manyes, S.2
Klafter, J.3
Urbakh, M.4
Fernandez, J.M.5
-
51
-
-
77953013756
-
Collapse dynamics of single proteins extended by force
-
Berkovich R, Garcia-Manyes S, Urbakh M, Klafter J, Fernandez JM. Collapse dynamics of single proteins extended by force. Biophys J 2010;98:2692-2701.
-
(2010)
Biophys J
, vol.98
, pp. 2692-2701
-
-
Berkovich, R.1
Garcia-Manyes, S.2
Urbakh, M.3
Klafter, J.4
Fernandez, J.M.5
-
52
-
-
33846839535
-
Characterizing the unfolded states of proteins using singlemolecule FRET spectroscopy and molecular simulations
-
Eaton WA, Merchant KA, Best RB, Louis JM, Gopich IV. Characterizing the unfolded states of proteins using singlemolecule FRET spectroscopy and molecular simulations. Proc Natl Acad Sci USA 2007;104:1528-1533.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 1528-1533
-
-
Eaton, W.A.1
Merchant, K.A.2
Best, R.B.3
Louis, J.M.4
Gopich, I.V.5
-
53
-
-
6944227839
-
Dynamical transition and proteinquake in photoactive yellow protein
-
Itoh K, Sasai M. Dynamical transition and proteinquake in photoactive yellow protein. Proc Natl Acad Sci USA 2004;101:14736-14741.
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 14736-14741
-
-
Itoh, K.1
Sasai, M.2
-
54
-
-
0041821716
-
Single-molecule kinetics of lambda exonuclease reveal base dependence and dynamic disorder
-
Xie XS, van Oijen AM, Blainey PC, Crampton DJ, Richardson CC, Ellenberger T. Single-molecule kinetics of lambda exonuclease reveal base dependence and dynamic disorder. Science 2003;301:1235-1238.
-
(2003)
Science
, vol.301
, pp. 1235-1238
-
-
Xie, X.S.1
Van Oijen, A.M.2
Blainey, P.C.3
Crampton, D.J.4
Richardson, C.C.5
Ellenberger, T.6
-
56
-
-
0038650860
-
Kinetics from nonequilibrium singlemolecule pulling experiments
-
Hummer G, Szabo A. Kinetics from nonequilibrium singlemolecule pulling experiments. Biophys J 2003;85:5-15.
-
(2003)
Biophys J
, vol.85
, pp. 5-15
-
-
Hummer, G.1
Szabo, A.2
-
57
-
-
67049117733
-
Characterizing the resistance generated by a molecular bond as it is forcibly separated
-
Freund LB. Characterizing the resistance generated by a molecular bond as it is forcibly separated. Proc Natl Acad Sci USA 2009;106:8818-8823.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 8818-8823
-
-
Freund, L.B.1
-
58
-
-
57949090593
-
New dynamical window onto the landscape for forced protein unfolding
-
Yew ZT, McLeish T, Paci E. New dynamical window onto the landscape for forced protein unfolding. Phys Rev Lett 2008;101.
-
(2008)
Phys Rev Lett
, pp. 101
-
-
Yew, Z.T.1
McLeish, T.2
Paci, E.3
-
59
-
-
0042508741
-
Pulling geometry defines the mechanical resistance of a beta-sheet protein
-
Brockwell DJ, Paci E, Zinober RC, Beddard GS, Olmsted PD, Smith DA, Perham RN, Radford SE. Pulling geometry defines the mechanical resistance of a beta-sheet protein. Nat Struct Biol 2003;10:731-737.
-
(2003)
Nat Struct Biol
, vol.10
, pp. 731-737
-
-
Brockwell, D.J.1
Paci, E.2
Zinober, R.C.3
Beddard, G.S.4
Olmsted, P.D.5
Smith, D.A.6
Perham, R.N.7
Radford, S.E.8
-
60
-
-
33645238592
-
The molecular elasticity of the insect flight muscle proteins projectin and kettin
-
Bullard B, Garcia T, Benes V, Leake MC, Linke WA, Oberhauser AF. The molecular elasticity of the insect flight muscle proteins projectin and kettin. Proc Natl Acad Sci USA 2006;103:4451-4456.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 4451-4456
-
-
Bullard, B.1
Garcia, T.2
Benes, V.3
Leake, M.C.4
Linke, W.A.5
Oberhauser, A.F.6
-
61
-
-
0036389817
-
Mechanical unfolding of a titin Ig domain: structure of unfolding intermediate revealed by combining AFM, molecular dynamics simulations, NMR and protein engineering
-
Fowler SB, Best RB, Herrera JLT, Rutherford TJ, Steward A, Paci E, Karplus M, Clarke J. Mechanical unfolding of a titin Ig domain: structure of unfolding intermediate revealed by combining AFM, molecular dynamics simulations, NMR and protein engineering. J Mol Biol 2002;322:841-849.
-
(2002)
J Mol Biol
, vol.322
, pp. 841-849
-
-
Fowler, S.B.1
Best, R.B.2
Herrera, J.L.T.3
Rutherford, T.J.4
Steward, A.5
Paci, E.6
Karplus, M.7
Clarke, J.8
-
62
-
-
0035103211
-
Fingerprinting polysaccharides with single-molecule atomic force microscopy
-
Marszalek PE, Li HB, Fernandez JM. Fingerprinting polysaccharides with single-molecule atomic force microscopy. Nat Biotechnol 2001;19:258-262.
-
(2001)
Nat Biotechnol
, vol.19
, pp. 258-262
-
-
Marszalek, P.E.1
Li, H.B.2
Fernandez, J.M.3
-
63
-
-
27644473726
-
Temperature softening of a protein in single-molecule experiments
-
Schlierf M, Rief M. Temperature softening of a protein in single-molecule experiments. J Mol Biol 2005;354:497-503.
-
(2005)
J Mol Biol
, vol.354
, pp. 497-503
-
-
Schlierf, M.1
Rief, M.2
-
64
-
-
0842313009
-
A mechanical unfolding intermediate in an actin-crosslinking protein
-
Schwaiger I, Kardinal A, Schleicher M, Noegel AA, Rief M. A mechanical unfolding intermediate in an actin-crosslinking protein. Nat Struct Mol Biol 2004;11:81-85.
-
(2004)
Nat Struct Mol Biol
, vol.11
, pp. 81-85
-
-
Schwaiger, I.1
Kardinal, A.2
Schleicher, M.3
Noegel, A.A.4
Rief, M.5
-
65
-
-
0032561384
-
Protein folding-Aglimpse of the holy grail?
-
Berendsen HJC. Protein folding-Aglimpse of the holy grail? Science 1998;282:642-643.
-
(1998)
Science
, vol.282
, pp. 642-643
-
-
Berendsen, H.J.C.1
-
66
-
-
34547648681
-
Collective Langevin dynamics of conformational motions in proteins
-
Lange OF, Grubmuller H. Collective Langevin dynamics of conformational motions in proteins. J Chem Phys 2006;124:214903-217918.
-
(2006)
J Chem Phys
, vol.124
, pp. 214903-217918
-
-
Lange, O.F.1
Grubmuller, H.2
-
67
-
-
0034984144
-
Protein folding theory: from lattice to all-atom models
-
Mirny L, Shakhnovich E. Protein folding theory: from lattice to all-atom models. Annu Rev Biophys Biomol Struct 2001;30:361-396.
-
(2001)
Annu Rev Biophys Biomol Struct
, vol.30
, pp. 361-396
-
-
Mirny, L.1
Shakhnovich, E.2
-
69
-
-
0031848099
-
Unfolding of titin immunoglobulin domains by steered molecular dynamics simulation
-
Lu H, Isralewitz B, Krammer A,Vogel V, Schulten K. Unfolding of titin immunoglobulin domains by steered molecular dynamics simulation. Biophys J 1998;74:662-671.
-
(1998)
Biophys J
, vol.74
, pp. 662-671
-
-
Lu, H.1
Isralewitz, B.2
Krammer, A.3
Vogel, V.4
Schulten, K.5
-
70
-
-
0033151955
-
Steered molecular dynamics simulations of force-induced protein domain unfolding
-
Lu H, Schulten K. Steered molecular dynamics simulations of force-induced protein domain unfolding. Prot Struct Funct Genet 1999;35:453-463.
-
(1999)
Prot Struct Funct Genet
, vol.35
, pp. 453-463
-
-
Lu, H.1
Schulten, K.2
-
71
-
-
0033917135
-
The key event in force-induced unfolding of titin's immunoglobulin domains
-
Lu H, Schulten K. The key event in force-induced unfolding of titin's immunoglobulin domains. Biophys J 2000;79:51-65.
-
(2000)
Biophys J
, vol.79
, pp. 51-65
-
-
Lu, H.1
Schulten, K.2
-
72
-
-
78650617915
-
Water's role in the forceinduced unfolding of ubiquitin
-
Berne BJ, Li JY, Fernandez JM. Water's role in the forceinduced unfolding of ubiquitin. Proc Natl Acad Sci USA 2010;107:19284-19289.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 19284-19289
-
-
Berne, B.J.1
Li, J.Y.2
Fernandez, J.M.3
-
73
-
-
76649112096
-
Computational and single-molecule force studies of a macro domain protein reveal a key molecular determinant for mechanical stability
-
Guzman DL, Randall A, Baldi P, Guan ZB. Computational and single-molecule force studies of a macro domain protein reveal a key molecular determinant for mechanical stability. Proc Natl Acad Sci USA 2010;107:1989-1994.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 1989-1994
-
-
Guzman, D.L.1
Randall, A.2
Baldi, P.3
Guan, Z.B.4
-
74
-
-
2442448427
-
The unfolding kinetics of ubiquitin captured with single-molecule force-clamp techniques
-
Schlierf M, Li H, Fernandez JM. The unfolding kinetics of ubiquitin captured with single-molecule force-clamp techniques. Proc Natl Acad Sci USA 2004;101:7299-7304.
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 7299-7304
-
-
Schlierf, M.1
Li, H.2
Fernandez, J.M.3
-
75
-
-
1542513548
-
Force-clamp spectroscopy monitors the folding trajectory of a single protein
-
Fernandez JM, Li H. Force-clamp spectroscopy monitors the folding trajectory of a single protein. Science 2004;303:1674-1678.
-
(2004)
Science
, vol.303
, pp. 1674-1678
-
-
Fernandez, J.M.1
Li, H.2
-
76
-
-
33845979460
-
Contour length and refolding rate of a small protein controlled by engineered disulfide bonds
-
Ainavarapu RK, Brujic J, Huang HH, Wiita AP, Lu H, Li LW,Walther KA, Carrion-Vazquez M, Li HB, Fernandez JM. Contour length and refolding rate of a small protein controlled by engineered disulfide bonds. Biophys J 2007;92:225-233.
-
(2007)
Biophys J
, vol.92
, pp. 225-233
-
-
Ainavarapu, R.K.1
Brujic, J.2
Huang, H.H.3
Wiita, A.P.4
Lu, H.5
Li, L.W.6
Walther, K.A.7
Carrion-Vazquez, M.8
Li, H.B.9
Fernandez, J.M.10
-
77
-
-
33645765218
-
Singlemolecule force spectroscopy reveals signatures of glassy dynamics in the energy landscape of ubiquitin
-
Brujic J, Hermans RI, Walther KA, Fernandez JM. Singlemolecule force spectroscopy reveals signatures of glassy dynamics in the energy landscape of ubiquitin. Nat Phys 2006;2:282-286.
-
(2006)
Nat Phys
, vol.2
, pp. 282-286
-
-
Brujic, J.1
Hermans, R.I.2
Walther, K.A.3
Fernandez, J.M.4
-
78
-
-
34147138772
-
Dwell-time distribution analysis of polyprotein unfolding using force-clamp spectroscopy
-
Brujic J, Hermans RIZ, Garcia-Manyes S, Walther KA, Fernandez JM. Dwell-time distribution analysis of polyprotein unfolding using force-clamp spectroscopy. Biophys J 2007;92:2896-2903.
-
(2007)
Biophys J
, vol.92
, pp. 2896-2903
-
-
Brujic, J.1
Hermans, R.I.Z.2
Garcia-Manyes, S.3
Walther, K.A.4
Fernandez, J.M.5
-
79
-
-
0020336190
-
Living with water-stress-evolution of osmolyte systems
-
Yancey PH, Clark ME, Hand SC, Bowlus RD, Somero GN. Living with water-stress-evolution of osmolyte systems. Science 1982;217:1214-1222.
-
(1982)
Science
, vol.217
, pp. 1214-1222
-
-
Yancey, P.H.1
Clark, M.E.2
Hand, S.C.3
Bowlus, R.D.4
Somero, G.N.5
-
80
-
-
27244437952
-
Predicting the energetics of osmolyteinduced protein folding/unfolding
-
Auton M, Bolen DW. Predicting the energetics of osmolyteinduced protein folding/unfolding. Proc Natl Acad Sci USA 2005;102:15065-15068.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 15065-15068
-
-
Auton, M.1
Bolen, D.W.2
-
81
-
-
77951669557
-
Chemistry of Hofmeister anions and osmolytes
-
Zhang YJ, Cremer PS. Chemistry of Hofmeister anions and osmolytes. Annu Rev Phys Chem 2010;61:63-83.
-
(2010)
Annu Rev Phys Chem
, vol.61
, pp. 63-83
-
-
Zhang, Y.J.1
Cremer, P.S.2
-
82
-
-
33749365298
-
A molecular mechanism for osmolyte-induced protein stability
-
Street TO, Bolen DW, Rose GD. A molecular mechanism for osmolyte-induced protein stability. Proc Natl Acad Sci USA 2006;103:13997-14002.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 13997-14002
-
-
Street, T.O.1
Bolen, D.W.2
Rose, G.D.3
-
83
-
-
0038370011
-
The molecular basis for the chemical denaturation of proteins by urea
-
Bennion BJ, Daggett V. The molecular basis for the chemical denaturation of proteins by urea. Proc Natl Acad Sci USA 2003;100:5142-5147.
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 5142-5147
-
-
Bennion, B.J.1
Daggett, V.2
-
84
-
-
16344389134
-
Molecular crowding enhances native state stability and refolding rates of globular proteins
-
Cheung MS, Klimov D, Thirumalai D. Molecular crowding enhances native state stability and refolding rates of globular proteins. Proc Natl Acad Sci USA 2005;102:4753-4758.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 4753-4758
-
-
Cheung, M.S.1
Klimov, D.2
Thirumalai, D.3
-
85
-
-
0019872622
-
Mechanism of protein stabilization by glycerol-preferential hydration in glycerol-water mixtures
-
Gekko K, Timasheff SN. Mechanism of protein stabilization by glycerol-preferential hydration in glycerol-water mixtures. Biochemistry 1981;20:4667-4676.
-
(1981)
Biochemistry
, vol.20
, pp. 4667-4676
-
-
Gekko, K.1
Timasheff, S.N.2
-
86
-
-
0030040794
-
On the role of surface tension in the stabilization of globular proteins
-
Lin TY, Timasheff SN. On the role of surface tension in the stabilization of globular proteins. Protein Sci 1996;5:372-381.
-
(1996)
Protein Sci
, vol.5
, pp. 372-381
-
-
Lin, T.Y.1
Timasheff, S.N.2
-
87
-
-
0028862864
-
The peptide backbone plays a dominant role in protein stabilization by naturally-occurring osmolytes
-
Liu YF, Bolen DW. The peptide backbone plays a dominant role in protein stabilization by naturally-occurring osmolytes. Biochemistry 1995;34:12884-12891.
-
(1995)
Biochemistry
, vol.34
, pp. 12884-12891
-
-
Liu, Y.F.1
Bolen, D.W.2
-
88
-
-
51649087154
-
Effects of denaturants and osmolytes on proteins are accurately predicted by the molecular transfer model
-
O'Brien EP, Ziv G, Haran G, Brooks BR, Thirumalai D. Effects of denaturants and osmolytes on proteins are accurately predicted by the molecular transfer model. Proc Natl Acad Sci USA 2008;105:13403-13408.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 13403-13408
-
-
O'Brien, E.P.1
Ziv, G.2
Haran, G.3
Brooks, B.R.4
Thirumalai, D.5
-
89
-
-
0037418635
-
Hammond behavior versus ground state effects in protein folding: evidence for narrow free energy barriers and residual structure in unfolded states
-
Sanchez IE, Kiefhaber T. Hammond behavior versus ground state effects in protein folding: evidence for narrow free energy barriers and residual structure in unfolded states. J Mol Biol 2003;327:867-884.
-
(2003)
J Mol Biol
, vol.327
, pp. 867-884
-
-
Sanchez, I.E.1
Kiefhaber, T.2
-
90
-
-
0001514211
-
Glycerol is a colligative antifreeze in some northern fishes
-
Raymond JA. Glycerol is a colligative antifreeze in some northern fishes. J Exp Zool 1992;262:347-352.
-
(1992)
J Exp Zool
, vol.262
, pp. 347-352
-
-
Raymond, J.A.1
-
91
-
-
0002615192
-
The mechanism of the protective action of glycerol against haemolysis by freezing and thawing
-
Lovelock JE. The mechanism of the protective action of glycerol against haemolysis by freezing and thawing. Biochim Biophys Acta 1953;11:28-36.
-
(1953)
Biochim Biophys Acta
, vol.11
, pp. 28-36
-
-
Lovelock, J.E.1
-
92
-
-
62549112667
-
Improved conception rates in sows inseminated with cryopreserved boar spermatozoa prepared with a more optimal combination of osmolality and glycerol in the freezing extender
-
Okazaki T, Abe S, Shimada M. Improved conception rates in sows inseminated with cryopreserved boar spermatozoa prepared with a more optimal combination of osmolality and glycerol in the freezing extender. Anim Sci J 2009;80:121-129.
-
(2009)
Anim Sci J
, vol.80
, pp. 121-129
-
-
Okazaki, T.1
Abe, S.2
Shimada, M.3
-
93
-
-
79959343218
-
Preference for isolated water molecules in a concentrated glycerol-water mixture
-
Towey JJ, Soper AK, Dougan L. Preference for isolated water molecules in a concentrated glycerol-water mixture. J Phys Chem B 2011;115:7799-7807.
-
(2011)
J Phys Chem B
, vol.115
, pp. 7799-7807
-
-
Towey, J.J.1
Soper, A.K.2
Dougan, L.3
-
94
-
-
79955585390
-
The structure of glycerol in the liquid state: a neutron diffraction study
-
Towey JJ, Soper AK, Dougan L. The structure of glycerol in the liquid state: a neutron diffraction study. Phys Chem Chem Phys 2011;13:9397-9406.
-
(2011)
Phys Chem Chem Phys
, vol.13
, pp. 9397-9406
-
-
Towey, J.J.1
Soper, A.K.2
Dougan, L.3
-
95
-
-
67649774601
-
Osmolyteinduced separation of the mechanical folding phases of ubiquitin
-
Garcia-Manyes S, Dougan L, Fernandez JM. Osmolyteinduced separation of the mechanical folding phases of ubiquitin. Proc Natl Acad Sci USA 2009;106:10540-10545.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 10540-10545
-
-
Garcia-Manyes, S.1
Dougan, L.2
Fernandez, J.M.3
-
96
-
-
79958767217
-
Observing the osmophobic effect in action at the single molecule level
-
Aioanei D, Tessari I, Bubacco L, Samorí B, Brucale M. Observing the osmophobic effect in action at the single molecule level. Prot Struct Funct Bioinform 2011;79:2214-2223.
-
(2011)
Prot Struct Funct Bioinform
, vol.79
, pp. 2214-2223
-
-
Aioanei, D.1
Tessari, I.2
Bubacco, L.3
Samorí, B.4
Brucale, M.5
-
97
-
-
56749155582
-
The effects of macromolecular crowding on the mechanical stability of protein molecules
-
Yang GL, Yuan JM, Chyan CL, Zhou HX, Chung TY, Peng HB, Ping GH. The effects of macromolecular crowding on the mechanical stability of protein molecules. Protein Sci 2008;17:2156-2166.
-
(2008)
Protein Sci
, vol.17
, pp. 2156-2166
-
-
Yang, G.L.1
Yuan, J.M.2
Chyan, C.L.3
Zhou, H.X.4
Chung, T.Y.5
Peng, H.B.6
Ping, G.H.7
-
98
-
-
36348998132
-
How do chemical denaturants affect the mechanical folding and unfolding of proteins?
-
Cao Y, Li H. How do chemical denaturants affect the mechanical folding and unfolding of proteins? J Mol Biol 2008;375:316-324.
-
(2008)
J Mol Biol
, vol.375
, pp. 316-324
-
-
Cao, Y.1
Li, H.2
-
99
-
-
78649677842
-
Naturally occurring osmolytes modulate the nano-mechanical properties of polycystic kidney disease (PKD) domain
-
Ma L, Xu M, Oberhauser A. Naturally occurring osmolytes modulate the nano-mechanical properties of polycystic kidney disease (PKD) domain. J Biol Chem 2010;285:38438-38443.
-
(2010)
J Biol Chem
, vol.285
, pp. 38438-38443
-
-
Ma, L.1
Xu, M.2
Oberhauser, A.3
-
100
-
-
79953899870
-
Single molecule force spectroscopy reveals that electrostatic interactions affect the mechanical stability of proteins
-
Li HB, Zheng P, Cao Y, Bu TJ, Straus SK. Single molecule force spectroscopy reveals that electrostatic interactions affect the mechanical stability of proteins. Biophys J 2011;100:1534-1541.
-
(2011)
Biophys J
, vol.100
, pp. 1534-1541
-
-
Li, H.B.1
Zheng, P.2
Cao, Y.3
Bu, T.J.4
Straus, S.K.5
-
101
-
-
0032510966
-
The aquaporins, blueprints for cellular plumbing systems
-
Agre P, Bonhivers M, Borgnia MJ. The aquaporins, blueprints for cellular plumbing systems. J Biol Chem 1998;273:14659-14662.
-
(1998)
J Biol Chem
, vol.273
, pp. 14659-14662
-
-
Agre, P.1
Bonhivers, M.2
Borgnia, M.J.3
-
102
-
-
0035861454
-
Water permeation across biological membranes: mechanism and dynamics of aquaporin-1 and GlpF
-
de Groot BL, Grubmuller H. Water permeation across biological membranes: mechanism and dynamics of aquaporin-1 and GlpF. Science 2001;294:2353-2357.
-
(2001)
Science
, vol.294
, pp. 2353-2357
-
-
De Groot, B.L.1
Grubmuller, H.2
-
103
-
-
0035183282
-
The mechanism of glycerol conduction in aquaglyceroporins
-
Jensen MO, Tajkhorshid E, Schulten K. The mechanism of glycerol conduction in aquaglyceroporins. Structure 2001;9:1083-1093.
-
(2001)
Structure
, vol.9
, pp. 1083-1093
-
-
Jensen, M.O.1
Tajkhorshid, E.2
Schulten, K.3
-
104
-
-
0003440781
-
Intermolecular and Surface Forces
-
NewYork: Academic Press
-
Israelachvili J. Intermolecular and Surface Forces. NewYork: Academic Press; 1991.
-
(1991)
-
-
Israelachvili, J.1
-
105
-
-
0003604014
-
The Hydrophobic Effect: Formation of Micelles and Biological Membranes
-
New York: Krieger Publishing Company
-
Tanford C. The Hydrophobic Effect: Formation of Micelles and Biological Membranes. New York: Krieger Publishing Company; 1991.
-
(1991)
-
-
Tanford, C.1
-
107
-
-
76549238253
-
The pleated sheet, a new layer configuration of polypeptide chains
-
Pauling L, Corey RB. The pleated sheet, a new layer configuration of polypeptide chains. Proc Natl Acad Sci USA 1951;37:251-256.
-
(1951)
Proc Natl Acad Sci USA
, vol.37
, pp. 251-256
-
-
Pauling, L.1
Corey, R.B.2
-
108
-
-
0001444341
-
Configuration of polypeptide chains
-
Pauling L, Corey RB. Configuration of polypeptide chains. Nature 1951;168:550-551.
-
(1951)
Nature
, vol.168
, pp. 550-551
-
-
Pauling, L.1
Corey, R.B.2
-
109
-
-
0001402095
-
Two rippled-sheet configurations of polypeptide chains, and a note about the pleated sheets
-
Pauling L, Corey RB. Two rippled-sheet configurations of polypeptide chains, and a note about the pleated sheets. Proc Natl Acad Sci USA 1953;39:253-256.
-
(1953)
Proc Natl Acad Sci USA
, vol.39
, pp. 253-256
-
-
Pauling, L.1
Corey, R.B.2
-
111
-
-
0027256739
-
Hydrogen-bonding, hydrophobicity, packing, and protein-folding
-
Rose GD, Wolfenden R. Hydrogen-bonding, hydrophobicity, packing, and protein-folding. Annu Rev Biophys Biomol Struct 1993;22:381-415.
-
(1993)
Annu Rev Biophys Biomol Struct
, vol.22
, pp. 381-415
-
-
Rose, G.D.1
Wolfenden, R.2
-
112
-
-
51749092455
-
Hydrogen bond networks determine emergent mechanical and thermodynamic properties across a protein family
-
Livesay DR, Huynh DH, Dallakyan S, Jacobs DJ. Hydrogen bond networks determine emergent mechanical and thermodynamic properties across a protein family. Chem Cent J 2008;2:17-24.
-
(2008)
Chem Cent J
, vol.2
, pp. 17-24
-
-
Livesay, D.R.1
Huynh, D.H.2
Dallakyan, S.3
Jacobs, D.J.4
-
113
-
-
0003178458
-
A deuterium isotope effect on excess enthalpy of methanol-water solutions
-
Benjamin L, Benson GC. A deuterium isotope effect on excess enthalpy of methanol-water solutions. J Phys Chem 1963;67:858-861.
-
(1963)
J Phys Chem
, vol.67
, pp. 858-861
-
-
Benjamin, L.1
Benson, G.C.2
-
114
-
-
0030010453
-
Relative stability of hydrogen and deuterium bonds
-
Scheiner S, Cuma M. Relative stability of hydrogen and deuterium bonds. J Am Chem Soc 1996;118:1511-1521.
-
(1996)
J Am Chem Soc
, vol.118
, pp. 1511-1521
-
-
Scheiner, S.1
Cuma, M.2
-
115
-
-
0013796956
-
Effect of D20 on thermal stability of proteins. Thermodynamic parameters for transfer of model compounds from H2O to D2O
-
Kresheck GC, Schneider H, Scheraga HA. Effect of D20 on thermal stability of proteins. Thermodynamic parameters for transfer of model compounds from H2O to D2O. J Phys Chem 1965;69:3132-3144.
-
(1965)
J Phys Chem
, vol.69
, pp. 3132-3144
-
-
Kresheck, G.C.1
Schneider, H.2
Scheraga, H.A.3
-
116
-
-
0032563742
-
Solvent isotope effect on thermodynamics of hydration
-
Lopez MM, Makhatadze GI. Solvent isotope effect on thermodynamics of hydration. Biophys Chem 1998;74:117-125.
-
(1998)
Biophys Chem
, vol.74
, pp. 117-125
-
-
Lopez, M.M.1
Makhatadze, G.I.2
-
117
-
-
0342750950
-
A study of the structure of water and its dependence on solutes, based on the isotope effects on solvation thermodynamics inwater
-
Marcus Y, Bennaim A. A study of the structure of water and its dependence on solutes, based on the isotope effects on solvation thermodynamics inwater. JChem Phys 1985;83:4744-4759.
-
(1985)
JChem Phys
, vol.83
, pp. 4744-4759
-
-
Marcus, Y.1
Bennaim, A.2
-
118
-
-
33847088763
-
Low-pressure solubility of gases in liquid water
-
Wilhelm E, Battino R, Wilcock RJ. Low-pressure solubility of gases in liquid water. Chem Rev 1977;77:219-262.
-
(1977)
Chem Rev
, vol.77
, pp. 219-262
-
-
Wilhelm, E.1
Battino, R.2
Wilcock, R.J.3
-
119
-
-
3442885636
-
Relationship between cohesive energy density and hydrophobicity
-
Graziano G. Relationship between cohesive energy density and hydrophobicity. J Chem Phys 2004;121:1878-1882.
-
(2004)
J Chem Phys
, vol.121
, pp. 1878-1882
-
-
Graziano, G.1
-
120
-
-
4344647036
-
Statistical thermodynamics of aqueous solutions. I.Water structure, solutions with non-polar solutes, and hydrophobic interactions
-
Griffith JH, Scheraga HA. Statistical thermodynamics of aqueous solutions. I.Water structure, solutions with non-polar solutes, and hydrophobic interactions. J Mol Struct-Theochem 2004;682:97-113.
-
(2004)
J Mol Struct-Theochem
, vol.682
, pp. 97-113
-
-
Griffith, J.H.1
Scheraga, H.A.2
-
122
-
-
0015523067
-
Effect of D2O on the association of beta-lactoglobulin A
-
Baghurst PA, Sawyer WH, Nichol LW. Effect of D2O on the association of beta-lactoglobulin A. J Biol Chem 1972;247:3199-3204.
-
(1972)
J Biol Chem
, vol.247
, pp. 3199-3204
-
-
Baghurst, P.A.1
Sawyer, W.H.2
Nichol, L.W.3
-
123
-
-
0033537662
-
Stabilization of tubulin by deuterium oxide
-
Chakrabarti G, Kim S, Gupta ML, Barton JS, Himes RH. Stabilization of tubulin by deuterium oxide. Biochemistry 1999;38:3067-3072.
-
(1999)
Biochemistry
, vol.38
, pp. 3067-3072
-
-
Chakrabarti, G.1
Kim, S.2
Gupta, M.L.3
Barton, J.S.4
Himes, R.H.5
-
124
-
-
0030716457
-
Deuterium oxide (heavy water) accelerates actin assembly in vitro and changes microfilament distribution in cultured cells
-
Omori H, Kuroda M, Naora H, Takeda H, Nio Y, Otani H, Tamura K. Deuterium oxide (heavy water) accelerates actin assembly in vitro and changes microfilament distribution in cultured cells. Eur J Cell Biol 1997;74:273-280.
-
(1997)
Eur J Cell Biol
, vol.74
, pp. 273-280
-
-
Omori, H.1
Kuroda, M.2
Naora, H.3
Takeda, H.4
Nio, Y.5
Otani, H.6
Tamura, K.7
-
125
-
-
0031010678
-
Amide backbone and water-related H/D isotope effects on the dynamics of a protein folding reaction
-
Parker MJ, Clarke AR. Amide backbone and water-related H/D isotope effects on the dynamics of a protein folding reaction. Biochemistry 1997;36:5786-5794.
-
(1997)
Biochemistry
, vol.36
, pp. 5786-5794
-
-
Parker, M.J.1
Clarke, A.R.2
-
126
-
-
58049172322
-
A single-molecule perspective on the role of solvent hydrogen bonds in protein folding and chemical reactions
-
Dougan L, Koti ASR, Genchev G, Lu H, Fernandez JM. A single-molecule perspective on the role of solvent hydrogen bonds in protein folding and chemical reactions. Chem Phys Chem 2008;9:2836-2847.
-
(2008)
Chem Phys Chem
, vol.9
, pp. 2836-2847
-
-
Dougan, L.1
Koti, A.S.R.2
Genchev, G.3
Lu, H.4
Fernandez, J.M.5
-
127
-
-
43449096360
-
Asymptotic strength limit of hydrogenbond assemblies in proteins at vanishing pulling rates
-
Keten S, Buehler MJ. Asymptotic strength limit of hydrogenbond assemblies in proteins at vanishing pulling rates. Phys Rev Lett 2008;100(19):198301.
-
(2008)
Phys Rev Lett
, vol.100
, Issue.19
, pp. 198301
-
-
Keten, S.1
Buehler, M.J.2
-
128
-
-
34249940831
-
Signatures of hydrophobic collapse in the extended proteins captured with force spectroscopy
-
Walther KA, Grater F, Dougan L, Badilla CL, Berne BJ, Fernandez JM. Signatures of hydrophobic collapse in the extended proteins captured with force spectroscopy. Proc Natl Acad Sci USA 2007;104:7916-7921.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 7916-7921
-
-
Walther, K.A.1
Grater, F.2
Dougan, L.3
Badilla, C.L.4
Berne, B.J.5
Fernandez, J.M.6
-
129
-
-
0032801806
-
Effect of solvents on interactions between hydrophobic self-assembled monolayers
-
Zukoski CF, Kokkoli E. Effect of solvents on interactions between hydrophobic self-assembled monolayers. J Colloid Interface Sci 1999;209:60-65.
-
(1999)
J Colloid Interface Sci
, vol.209
, pp. 60-65
-
-
Zukoski, C.F.1
Kokkoli, E.2
-
130
-
-
0037154268
-
Protein folding mediated by solvation: water expulsion and formation of the hydrophobic core occur after the structural collapse
-
Cheung MS, Garcia AE, Onuchic JN. Protein folding mediated by solvation: water expulsion and formation of the hydrophobic core occur after the structural collapse. Proc Natl Acad Sci USA 2002;99:685-690.
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 685-690
-
-
Cheung, M.S.1
Garcia, A.E.2
Onuchic, J.N.3
-
131
-
-
67649399290
-
Single molecule force spectroscopy of the cardiac titin N2B element
-
Zhu Y, Bogomolovas J, Labeit S, Granzier H. Single molecule force spectroscopy of the cardiac titin N2B element. J Biol Chem 2009;284:13914-13923.
-
(2009)
J Biol Chem
, vol.284
, pp. 13914-13923
-
-
Zhu, Y.1
Bogomolovas, J.2
Labeit, S.3
Granzier, H.4
-
132
-
-
49449106310
-
Engineered elastomeric proteins with dual elasticity can be controlled by a molecular regulator
-
Cao Y, Li HB. Engineered elastomeric proteins with dual elasticity can be controlled by a molecular regulator. Nat Nanotechnol 2008;3:512-516.
-
(2008)
Nat Nanotechnol
, vol.3
, pp. 512-516
-
-
Cao, Y.1
Li, H.B.2
-
133
-
-
35648958777
-
A functional single-molecule binding assay via force spectroscopy
-
Cao Y, Balamurali MM, Sharma D, Li HB. A functional single-molecule binding assay via force spectroscopy. Proc Natl Acad Sci USA 2007;104:15677-15681.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 15677-15681
-
-
Cao, Y.1
Balamurali, M.M.2
Sharma, D.3
Li, H.B.4
-
134
-
-
33748458112
-
Fingerprinting DHFR in single-molecule AFM studies-response to the comment by Ainavarapu et al
-
Rief M, Junker JP, Schlierf M, Hell K, Neupert W. Fingerprinting DHFR in single-molecule AFM studies-response to the comment by Ainavarapu et al. Biophys J 2006;91:2011-2012.
-
(2006)
Biophys J
, vol.91
, pp. 2011-2012
-
-
Rief, M.1
Junker, J.P.2
Schlierf, M.3
Hell, K.4
Neupert, W.5
-
135
-
-
77954378198
-
Mechanical unfolding of acylphosphatase studied by single-molecule force spectroscopy and MD simulations
-
Arad-Haase G, Chuartzman SG, Dagan S, Nevo R, Kouza M, Mai BK, Nguyen HT, Li MS, Reich Z. Mechanical unfolding of acylphosphatase studied by single-molecule force spectroscopy and MD simulations. Biophys J 2010;99:238-247.
-
(2010)
Biophys J
, vol.99
, pp. 238-247
-
-
Arad-Haase, G.1
Chuartzman, S.G.2
Dagan, S.3
Nevo, R.4
Kouza, M.5
Mai, B.K.6
Nguyen, H.T.7
Li, M.S.8
Reich, Z.9
-
136
-
-
79952584786
-
Kinetic measurements on singlemolecule disulfide bond cleavage
-
Liang J, Fernandez JM. Kinetic measurements on singlemolecule disulfide bond cleavage. J Am Chem Soc 2011;133:3528-3534.
-
(2011)
J Am Chem Soc
, vol.133
, pp. 3528-3534
-
-
Liang, J.1
Fernandez, J.M.2
-
137
-
-
33645870422
-
Production of the antimalarial drug precursor artemisinic acid in engineered yeast
-
Ro DK, Paradise EM, Ouellet M, Fisher KJ, Newman KL, Ndungu JM, Ho KA, Eachus RA, Ham TS, Kirby J, Chang MCY, Withers ST, Shiba Y, Sarpong R, Keasling JD. Production of the antimalarial drug precursor artemisinic acid in engineered yeast. Nature 2006;440:940-943.
-
(2006)
Nature
, vol.440
, pp. 940-943
-
-
Ro, D.K.1
Paradise, E.M.2
Ouellet, M.3
Fisher, K.J.4
Newman, K.L.5
Ndungu, J.M.6
Ho, K.A.7
Eachus, R.A.8
Ham, T.S.9
Kirby, J.10
Chang, M.C.Y.11
Withers, S.T.12
Shiba, Y.13
Sarpong, R.14
Keasling, J.D.15
-
139
-
-
57349109904
-
Biocatalyst activity in nonaqueous environments correlates with centisecond-range protein motions
-
Eppler RK, Hudson EP, Chase SD, Dordick JS, Reimer JA, Clark DS. Biocatalyst activity in nonaqueous environments correlates with centisecond-range protein motions. Proc Natl Acad Sci USA 2008;105:15672-15677.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 15672-15677
-
-
Eppler, R.K.1
Hudson, E.P.2
Chase, S.D.3
Dordick, J.S.4
Reimer, J.A.5
Clark, D.S.6
-
140
-
-
39749193968
-
Cardiac function and modulation of sarcomeric function by length
-
Hanft L, Korte FS, McDonald KS. Cardiac function and modulation of sarcomeric function by length. Cardiovasc Res 2008;77(4):627-636.
-
(2008)
Cardiovasc Res
, vol.77
, Issue.4
, pp. 627-636
-
-
Hanft, L.1
Korte, F.S.2
McDonald, K.S.3
|