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Volumn 105, Issue , 2013, Pages 125-132

On the potential role of active DNA demethylation in establishing epigenetic states associated with neural plasticity and memory

Author keywords

Active DNA demethylation; Epigenetic; Memory

Indexed keywords

ACTIVATION INDUCED CYTIDINE DEAMINASE; DNA; GROWTH ARREST AND DNA DAMAGE INDUCIBLE PROTEIN 45; METHYL CPG BINDING PROTEIN; METHYL CPG BINDING PROTEIN 4; THYMINE DNA GLYCOSYLASE; TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR TET; UNCLASSIFIED DRUG;

EID: 84884129306     PISSN: 10747427     EISSN: 10959564     Source Type: Journal    
DOI: 10.1016/j.nlm.2013.06.009     Document Type: Article
Times cited : (37)

References (105)
  • 1
    • 84871716362 scopus 로고    scopus 로고
    • Dynamic DNA methylation: A prime candidate for genomic metaplasticity and behavioral adaptation
    • Baker-Andresen D., Ratnu V.S., Bredy T.W. Dynamic DNA methylation: A prime candidate for genomic metaplasticity and behavioral adaptation. Trends in Neurosciences 2013, 36:3-13.
    • (2013) Trends in Neurosciences , vol.36 , pp. 3-13
    • Baker-Andresen, D.1    Ratnu, V.S.2    Bredy, T.W.3
  • 2
    • 37549068891 scopus 로고    scopus 로고
    • Visualizing circuits and system using trangenic reporters of neural activity
    • Barth A.L. Visualizing circuits and system using trangenic reporters of neural activity. Current Opinion in Neurobiology 2007, 17(5):567-571.
    • (2007) Current Opinion in Neurobiology , vol.17 , Issue.5 , pp. 567-571
    • Barth, A.L.1
  • 3
    • 34249299791 scopus 로고    scopus 로고
    • The complex language of chromatin regulation during transcription
    • Berger S.L. The complex language of chromatin regulation during transcription. Nature 2007, 447:407-412.
    • (2007) Nature , vol.447 , pp. 407-412
    • Berger, S.L.1
  • 4
    • 77649104794 scopus 로고    scopus 로고
    • Reprogramming towards pluripotency requires AID-dependent DNA demethylation
    • Bhutani N., Bredy J.J., Damian M., Sacco A., Corbel S.Y., Blau H.M. Reprogramming towards pluripotency requires AID-dependent DNA demethylation. Nature 2010, 463:1042-1047.
    • (2010) Nature , vol.463 , pp. 1042-1047
    • Bhutani, N.1    Bredy, J.J.2    Damian, M.3    Sacco, A.4    Corbel, S.Y.5    Blau, H.M.6
  • 5
    • 0036144048 scopus 로고    scopus 로고
    • DNA methylation patterns and epigenetic memory
    • Bird A. DNA methylation patterns and epigenetic memory. Genes & Development 2002, 16:6-21.
    • (2002) Genes & Development , vol.16 , pp. 6-21
    • Bird, A.1
  • 7
    • 43449097507 scopus 로고    scopus 로고
    • Characterization of Dnmt3b:Thymine-DNA glycosylase interaction and stimulation of thymine glycosylase-mediated repair by DNA methyltransferase(s) and RNA
    • Boland M.J., Christman J.K. Characterization of Dnmt3b:Thymine-DNA glycosylase interaction and stimulation of thymine glycosylase-mediated repair by DNA methyltransferase(s) and RNA. Journal of Molecular Biology 2008, 379:492-504.
    • (2008) Journal of Molecular Biology , vol.379 , pp. 492-504
    • Boland, M.J.1    Christman, J.K.2
  • 8
    • 84875165863 scopus 로고    scopus 로고
    • Epigenetic programming and reprogramming during development
    • Cantone I., Fisher A.G. Epigenetic programming and reprogramming during development. Nature Structure & Molecular Biology 2013, 20(3):282-289.
    • (2013) Nature Structure & Molecular Biology , vol.20 , Issue.3 , pp. 282-289
    • Cantone, I.1    Fisher, A.G.2
  • 9
    • 84866940776 scopus 로고    scopus 로고
    • The mammalian de novo DNA methyltransferases DNMT3A and DNMT3B are also DNA 5-hydroxymethylcytosine dehydroxymethylases
    • Chen C.-C., Wang K.-Y., Shen C.-K.J. The mammalian de novo DNA methyltransferases DNMT3A and DNMT3B are also DNA 5-hydroxymethylcytosine dehydroxymethylases. Journal of Biological Chemistry 2012, 287:33116-33121.
    • (2012) Journal of Biological Chemistry , vol.287 , pp. 33116-33121
    • Chen, C.-C.1    Wang, K.-Y.2    Shen, C.-K.J.3
  • 10
    • 84875990730 scopus 로고    scopus 로고
    • DNA 5-methylcytosine demethylation activities of the mammalian DNA methyltransferases
    • Chen C.-C., Wang K.-Y., Shen C.-K.J. DNA 5-methylcytosine demethylation activities of the mammalian DNA methyltransferases. Journal of Biological Chemistry 2013, M122:445585.
    • (2013) Journal of Biological Chemistry , vol.M122 , pp. 445585
    • Chen, C.-C.1    Wang, K.-Y.2    Shen, C.-K.J.3
  • 11
    • 84864752375 scopus 로고    scopus 로고
    • Cfp1 integrates both CpG content and gene activity for accurate H3K4me3 deposition in embryonic stem cells
    • Clouaire T., Webb S., Skene P., Illingworth R., Kerr A., Andrews R., et al. Cfp1 integrates both CpG content and gene activity for accurate H3K4me3 deposition in embryonic stem cells. Genes & Development 2012, 26:1714-1728.
    • (2012) Genes & Development , vol.26 , pp. 1714-1728
    • Clouaire, T.1    Webb, S.2    Skene, P.3    Illingworth, R.4    Kerr, A.5    Andrews, R.6
  • 12
    • 79951810964 scopus 로고    scopus 로고
    • Embryonic lethal phenotype reveals a function of TDG in maintaining epigenetic stability
    • Cortázar D., Kunz C., Selfridge J., Lettieri T., Saito Y., MacDougall E., et al. Embryonic lethal phenotype reveals a function of TDG in maintaining epigenetic stability. Nature 2011, 470:419-423.
    • (2011) Nature , vol.470 , pp. 419-423
    • Cortázar, D.1    Kunz, C.2    Selfridge, J.3    Lettieri, T.4    Saito, Y.5    MacDougall, E.6
  • 13
    • 7044278257 scopus 로고    scopus 로고
    • The base excision repair enzyme MED1 mediates DNA damage response to antitumor drugs and is associated with mismatch repair system integrity
    • Cortellino S., Turner D., Masciullo V., Schepis F., Albino D., Daniel R., et al. The base excision repair enzyme MED1 mediates DNA damage response to antitumor drugs and is associated with mismatch repair system integrity. Proceedings of the National Academy of Science 2003, 100:15071-15076.
    • (2003) Proceedings of the National Academy of Science , vol.100 , pp. 15071-15076
    • Cortellino, S.1    Turner, D.2    Masciullo, V.3    Schepis, F.4    Albino, D.5    Daniel, R.6
  • 14
    • 79959937861 scopus 로고    scopus 로고
    • Thymine DNA glycosylase is essential for active DNA demethylation by linked deamination-base excision repair
    • Cortellino S., Xu J., Sannai M., Moore R., Caretti E., Cigliano A., et al. Thymine DNA glycosylase is essential for active DNA demethylation by linked deamination-base excision repair. Cell 2011, 146:67-79.
    • (2011) Cell , vol.146 , pp. 67-79
    • Cortellino, S.1    Xu, J.2    Sannai, M.3    Moore, R.4    Caretti, E.5    Cigliano, A.6
  • 15
    • 3142719181 scopus 로고    scopus 로고
    • DNA methylation in brain development and gliomagenesis
    • Costello J.F. DNA methylation in brain development and gliomagenesis. Frontiers in Bioscience 2003, 8S:175-184.
    • (2003) Frontiers in Bioscience , vol.8 S , pp. 175-184
    • Costello, J.F.1
  • 16
    • 77958580776 scopus 로고    scopus 로고
    • DNA methylation and memory formation
    • Day J.J., Sweatt J.D. DNA methylation and memory formation. Nature Neuroscience 2010, 13:1319-1323.
    • (2010) Nature Neuroscience , vol.13 , pp. 1319-1323
    • Day, J.J.1    Sweatt, J.D.2
  • 18
    • 84875218124 scopus 로고    scopus 로고
    • TET2 and TET3 regulate GlcNAcylation and H3K4 methylation through OGT and SET1/COMPASS
    • Deplus R., Delatte B., Schwinn M.K., Defrance M., Méndez J., Murphy N., et al. TET2 and TET3 regulate GlcNAcylation and H3K4 methylation through OGT and SET1/COMPASS. EMBO Journal 2013, 32:645-655.
    • (2013) EMBO Journal , vol.32 , pp. 645-655
    • Deplus, R.1    Delatte, B.2    Schwinn, M.K.3    Defrance, M.4    Méndez, J.5    Murphy, N.6
  • 19
    • 34248370579 scopus 로고    scopus 로고
    • Demethylation of reelin and glutamic acid decarboxylase 67 brain promoters is induced by hyperacetylation of histones
    • Dong E., Guidotti A., Grayson D.R., Costa E. Demethylation of reelin and glutamic acid decarboxylase 67 brain promoters is induced by hyperacetylation of histones. Proceedings of the National Academy of Science 2007, 104:4676-4681.
    • (2007) Proceedings of the National Academy of Science , vol.104 , pp. 4676-4681
    • Dong, E.1    Guidotti, A.2    Grayson, D.R.3    Costa, E.4
  • 20
    • 0035933336 scopus 로고    scopus 로고
    • The activity of the murine DNA methyltransferase Dnmt1 is controlled by interaction of the catalytic domain with the N-terminal art of the enzyme leading to an allosteric activation of the enzyme after binding to methylated DNA
    • Fatemi M., Hermann A., Pradhan S., Jeltsch A. The activity of the murine DNA methyltransferase Dnmt1 is controlled by interaction of the catalytic domain with the N-terminal art of the enzyme leading to an allosteric activation of the enzyme after binding to methylated DNA. Journal of Molecular Biology 2001, 309:1189-1199.
    • (2001) Journal of Molecular Biology , vol.309 , pp. 1189-1199
    • Fatemi, M.1    Hermann, A.2    Pradhan, S.3    Jeltsch, A.4
  • 21
    • 16444381345 scopus 로고    scopus 로고
    • Dynamic expression of de novo DNA methyltransferases Dnmt3a and Dnmt3b in the central nervous system
    • Feng J., Chang H., Fan G.P. Dynamic expression of de novo DNA methyltransferases Dnmt3a and Dnmt3b in the central nervous system. Journal of Neuroscience Research 2005, 79:734-746.
    • (2005) Journal of Neuroscience Research , vol.79 , pp. 734-746
    • Feng, J.1    Chang, H.2    Fan, G.P.3
  • 22
    • 77950187447 scopus 로고    scopus 로고
    • Dnmt1 and Dnmt3a maintain DNA methylation and regulate synaptic function in adult forebrain neurons
    • Feng J., Zhou Y., Campbell S.L., Le T., Li E., Sweatt J.D., et al. Dnmt1 and Dnmt3a maintain DNA methylation and regulate synaptic function in adult forebrain neurons. Nature Neuroscience 2010, 13:423-430.
    • (2010) Nature Neuroscience , vol.13 , pp. 423-430
    • Feng, J.1    Zhou, Y.2    Campbell, S.L.3    Le, T.4    Li, E.5    Sweatt, J.D.6
  • 23
    • 78650019179 scopus 로고    scopus 로고
    • Leukemic IDH1 and IDH2 mutations result ina Hypermethylation phenotype, disrupt TET2 function, and impair hematopoietic differentiation
    • Figueroa M.E., et al. Leukemic IDH1 and IDH2 mutations result ina Hypermethylation phenotype, disrupt TET2 function, and impair hematopoietic differentiation. Cancer Cell 2010, 18:553-567.
    • (2010) Cancer Cell , vol.18 , pp. 553-567
    • Figueroa, M.E.1
  • 25
    • 78650826181 scopus 로고    scopus 로고
    • Tissue distribution of 5-hydroxymethylcytosine and search for active demethylation intermediates
    • Globisch D., Münzel M., Müller M., Michalakis S., Wagner M., Koch S., et al. Tissue distribution of 5-hydroxymethylcytosine and search for active demethylation intermediates. PLoS ONE 2010, 5:e15367.
    • (2010) PLoS ONE , vol.5
    • Globisch, D.1    Münzel, M.2    Müller, M.3    Michalakis, S.4    Wagner, M.5    Koch, S.6
  • 26
    • 80053348585 scopus 로고    scopus 로고
    • The role of Tet3 DNA dioxygenase in epigenetic reprogramming by oocytes
    • Gu T.-P., Guo F., Yang H., Wu H.-P., Xu G.-F., Liu W., et al. The role of Tet3 DNA dioxygenase in epigenetic reprogramming by oocytes. Nature 2011, 477:606-610.
    • (2011) Nature , vol.477 , pp. 606-610
    • Gu, T.-P.1    Guo, F.2    Yang, H.3    Wu, H.-P.4    Xu, G.-F.5    Liu, W.6
  • 28
    • 79955538247 scopus 로고    scopus 로고
    • Hydroxylation of 5-methylcytosine by TET1 promotes active DNA demethylation in the adult brain
    • Guo J.U., Su Y., Zhong C., Ming G.-L., Song H. Hydroxylation of 5-methylcytosine by TET1 promotes active DNA demethylation in the adult brain. Cell 2011, 145:423-434.
    • (2011) Cell , vol.145 , pp. 423-434
    • Guo, J.U.1    Su, Y.2    Zhong, C.3    Ming, G.-L.4    Song, H.5
  • 29
    • 84874252793 scopus 로고    scopus 로고
    • Dynamics of 5-hydroxymethylcytosine and chromatin marks in mammalian neurogenesis
    • Hahn M.A., Qiu R., Wu X., Li A.X., Zhang H., Wang J., et al. Dynamics of 5-hydroxymethylcytosine and chromatin marks in mammalian neurogenesis. Cell Reports 2013, 3:291-300.
    • (2013) Cell Reports , vol.3 , pp. 291-300
    • Hahn, M.A.1    Qiu, R.2    Wu, X.3    Li, A.X.4    Zhang, H.5    Wang, J.6
  • 30
    • 77954345408 scopus 로고    scopus 로고
    • Genome-wide reprogramming in the mouse germ line entails the base excision repair pathway
    • Hajkova P., Jeffries S.J., Lee C., Miller N., Jackson S.P., Surani M.A. Genome-wide reprogramming in the mouse germ line entails the base excision repair pathway. Science 2010, 329:78-82.
    • (2010) Science , vol.329 , pp. 78-82
    • Hajkova, P.1    Jeffries, S.J.2    Lee, C.3    Miller, N.4    Jackson, S.P.5    Surani, M.A.6
  • 31
    • 77954624378 scopus 로고    scopus 로고
    • Effect of 5-aza-2-deoxycytidine microinjecting into hippocampus and prelimbic cortex on acquisition and retrieval of cocaine-induced place preference in C57BL/6 mice
    • Han J., Li Y., Wang D., Yang X., Sui N. Effect of 5-aza-2-deoxycytidine microinjecting into hippocampus and prelimbic cortex on acquisition and retrieval of cocaine-induced place preference in C57BL/6 mice. European Journal of Pharmacology 2010, 642(1-3):93-98.
    • (2010) European Journal of Pharmacology , vol.642 , Issue.1-3 , pp. 93-98
    • Han, J.1    Li, Y.2    Wang, D.3    Yang, X.4    Sui, N.5
  • 32
    • 84860221291 scopus 로고    scopus 로고
    • Recognition and potential mechanisms for replication and erasure of cytosine hydroxymethylation
    • Hashimoto H., Liu Y., Upadhyay A.K., Chang Y., Howerton S.B., Vertino P.M., et al. Recognition and potential mechanisms for replication and erasure of cytosine hydroxymethylation. Nucleic Acids Research 2012, 40:4841-4849.
    • (2012) Nucleic Acids Research , vol.40 , pp. 4841-4849
    • Hashimoto, H.1    Liu, Y.2    Upadhyay, A.K.3    Chang, Y.4    Howerton, S.B.5    Vertino, P.M.6
  • 33
    • 84866887356 scopus 로고    scopus 로고
    • Excision of thymine and 5-hydroxymethyluracil by the MBD4 DNA glycosylase domain: Structural basis and implications for active DNA demethylation
    • Hashimoto H., Zhang X., Cheng X. Excision of thymine and 5-hydroxymethyluracil by the MBD4 DNA glycosylase domain: Structural basis and implications for active DNA demethylation. Nucleic Acids Research 2012, 40(17):8276-8284.
    • (2012) Nucleic Acids Research , vol.40 , Issue.17 , pp. 8276-8284
    • Hashimoto, H.1    Zhang, X.2    Cheng, X.3
  • 34
    • 0033575886 scopus 로고    scopus 로고
    • The thymine glycosylase MBD4 can bind to the product of deamination at methylated CpG sites
    • Hendrich B., Hardeland U., Ng H.H., Jiricny J., Bird A. The thymine glycosylase MBD4 can bind to the product of deamination at methylated CpG sites. Nature 1999, 401:301-304.
    • (1999) Nature , vol.401 , pp. 301-304
    • Hendrich, B.1    Hardeland, U.2    Ng, H.H.3    Jiricny, J.4    Bird, A.5
  • 35
    • 77649177097 scopus 로고    scopus 로고
    • Predictive chromatin signatures in the mammalian genome
    • Hon G.C., Hawkins R.D., Ren B. Predictive chromatin signatures in the mammalian genome. Human Molecular Genetics 2009, 18:195-201.
    • (2009) Human Molecular Genetics , vol.18 , pp. 195-201
    • Hon, G.C.1    Hawkins, R.D.2    Ren, B.3
  • 36
    • 79952763586 scopus 로고    scopus 로고
    • Reprogramming of the paternal genome upon fertilization involves genome-wide oxidation of 5-methylcytosine
    • Iqbal K., Jin S.-G., Pfeifer G.P., Szabó P.E. Reprogramming of the paternal genome upon fertilization involves genome-wide oxidation of 5-methylcytosine. Proceedings of the National Academy of Sciences 2011, 108:3642-3647.
    • (2011) Proceedings of the National Academy of Sciences , vol.108 , pp. 3642-3647
    • Iqbal, K.1    Jin, S.-G.2    Pfeifer, G.P.3    Szabó, P.E.4
  • 37
    • 77956189495 scopus 로고    scopus 로고
    • Role of Tet proteins in 5mC to 5hmC conversion, ES-cell self-renewal and inner cell mass specification
    • Ito S., D'Alessio A.C., Taranova O.V., Hong K., Sowers L.C., Zhang Y. Role of Tet proteins in 5mC to 5hmC conversion, ES-cell self-renewal and inner cell mass specification. Nature 2010, 466:1129-1133.
    • (2010) Nature , vol.466 , pp. 1129-1133
    • Ito, S.1    D'Alessio, A.C.2    Taranova, O.V.3    Hong, K.4    Sowers, L.C.5    Zhang, Y.6
  • 38
    • 80052461558 scopus 로고    scopus 로고
    • Tet proteins can convert 5-methylcytosine to 5-formylcytosine and 5-carboxylcytosine
    • Ito S., Shen L., Dai Q., Wu S.C., Collins L.B., Swenberg J.A., et al. Tet proteins can convert 5-methylcytosine to 5-formylcytosine and 5-carboxylcytosine. Science 2011, 333:1300-1303.
    • (2011) Science , vol.333 , pp. 1300-1303
    • Ito, S.1    Shen, L.2    Dai, Q.3    Wu, S.C.4    Collins, L.B.5    Swenberg, J.A.6
  • 39
    • 0027310491 scopus 로고
    • Nuclear extracts of chicken embryos promote an active demethylation of DNA by excision repair of 5-methyldeoxycytidine
    • Jost J.P. Nuclear extracts of chicken embryos promote an active demethylation of DNA by excision repair of 5-methyldeoxycytidine. Proceedings of the National Academy of Science 1993, 90(10):4684-4688.
    • (1993) Proceedings of the National Academy of Science , vol.90 , Issue.10 , pp. 4684-4688
    • Jost, J.P.1
  • 40
    • 0028934977 scopus 로고
    • Mechanisms of DNA demethylation in chicken embryos purification and properties of a 5-methylcytosine-DNA glycosylase
    • Jost J.P., Siegmann Sun.L., Leung R. Mechanisms of DNA demethylation in chicken embryos purification and properties of a 5-methylcytosine-DNA glycosylase. Journal of Biological Chemistry 1995, 270:9734-9739.
    • (1995) Journal of Biological Chemistry , vol.270 , pp. 9734-9739
    • Jost, J.P.1    Siegmann, S.2    Leung, R.3
  • 43
    • 80052284526 scopus 로고    scopus 로고
    • Ten-Eleven-Translocation 2 (TET2) negatively regulates homeostasis and differentiation of hematopoietic stem cells in mice
    • Ko M., Bandukwala H.S., An J., Lamperti E.D., Thompson E.C., Hastie R., et al. Ten-Eleven-Translocation 2 (TET2) negatively regulates homeostasis and differentiation of hematopoietic stem cells in mice. Proceedings of the National Academy of Science 2011, 108(35):14566-14571.
    • (2011) Proceedings of the National Academy of Science , vol.108 , Issue.35 , pp. 14566-14571
    • Ko, M.1    Bandukwala, H.S.2    An, J.3    Lamperti, E.D.4    Thompson, E.C.5    Hastie, R.6
  • 44
    • 66149123748 scopus 로고    scopus 로고
    • The nuclear DNA base 5-hydroxymethylcytosine is present in purkinje neurons and the brain
    • Kriaucionis S., Heintz N. The nuclear DNA base 5-hydroxymethylcytosine is present in purkinje neurons and the brain. Science 2009, 324:929-930.
    • (2009) Science , vol.324 , pp. 929-930
    • Kriaucionis, S.1    Heintz, N.2
  • 45
    • 59449101948 scopus 로고    scopus 로고
    • The Reelin and GAD67 promoters are activated by epigenetic drugs that facilitate the disruption of local repressor complexes
    • Kundakovic M., Chen Y., Guidotti A., Grayson D. The Reelin and GAD67 promoters are activated by epigenetic drugs that facilitate the disruption of local repressor complexes. Molecular Pharmacology 2009, 75(2):342-354.
    • (2009) Molecular Pharmacology , vol.75 , Issue.2 , pp. 342-354
    • Kundakovic, M.1    Chen, Y.2    Guidotti, A.3    Grayson, D.4
  • 47
    • 77950443318 scopus 로고    scopus 로고
    • NER factors are recruited to active promoters and facilitate chromatin modification for transcription in the absence of exogenous genotoxic attack
    • Le May N., Mota-Fernandes D., VElez-Cruz R., Iltis I., Biard D., Egly J.M. NER factors are recruited to active promoters and facilitate chromatin modification for transcription in the absence of exogenous genotoxic attack. Molecular Cell 2010, 38:54-66.
    • (2010) Molecular Cell , vol.38 , pp. 54-66
    • Le May, N.1    Mota-Fernandes, D.2    VElez-Cruz, R.3    Iltis, I.4    Biard, D.5    Egly, J.M.6
  • 49
    • 84859364201 scopus 로고    scopus 로고
    • Gadd45a inhibition of DNMT1 dependent DNA methylation during homology directed DNA repair
    • Lee B., Morano A., Procellini A., Muller M.R. Gadd45a inhibition of DNMT1 dependent DNA methylation during homology directed DNA repair. Nucleic Acids Research 2012, 40(6):2481-2493.
    • (2012) Nucleic Acids Research , vol.40 , Issue.6 , pp. 2481-2493
    • Lee, B.1    Morano, A.2    Procellini, A.3    Muller, M.R.4
  • 50
    • 33744920106 scopus 로고    scopus 로고
    • Evidence that DNA (cytosine-5) methyltransferase regulates synaptic plasticity in the hippocampus
    • Levenson J.M., Roth T.L., Lubin F.D., Miller C.A., Huang I.C., Desai P., et al. Evidence that DNA (cytosine-5) methyltransferase regulates synaptic plasticity in the hippocampus. Journal of Biological Chemistry 2006, 281(23):15763-15773.
    • (2006) Journal of Biological Chemistry , vol.281 , Issue.23 , pp. 15763-15773
    • Levenson, J.M.1    Roth, T.L.2    Lubin, F.D.3    Miller, C.A.4    Huang, I.C.5    Desai, P.6
  • 51
    • 33846909036 scopus 로고    scopus 로고
    • Association of Dnmt3a and thymine DNA glycosylase links DNA methylation with base-excision repair
    • Li Y.Q., Zhou P.Z., Zheng X.D., Walsh C.P., Xu G.L. Association of Dnmt3a and thymine DNA glycosylase links DNA methylation with base-excision repair. Nucleic Acids Research 2006, 35:390-400.
    • (2006) Nucleic Acids Research , vol.35 , pp. 390-400
    • Li, Y.Q.1    Zhou, P.Z.2    Zheng, X.D.3    Walsh, C.P.4    Xu, G.L.5
  • 52
    • 54849426071 scopus 로고    scopus 로고
    • Epigenetic regulation of bdnf gene transcription in the consolidation of fear memory
    • Lubin F.D., Roth T.L., Sweatt J.D. Epigenetic regulation of bdnf gene transcription in the consolidation of fear memory. Journal of Neuroscience 2008, 28(42):10576-10586.
    • (2008) Journal of Neuroscience , vol.28 , Issue.42 , pp. 10576-10586
    • Lubin, F.D.1    Roth, T.L.2    Sweatt, J.D.3
  • 53
    • 60749094831 scopus 로고    scopus 로고
    • Neuronal activity-induced Gadd45b promotes epigenetic DNA demethylation and adult neurogenesis
    • Ma D.K., Jang M.H., Guo J.U., Kitabatake Y., Chang M.L., Pow-anpongkul N., et al. Neuronal activity-induced Gadd45b promotes epigenetic DNA demethylation and adult neurogenesis. Science 2009, 323:1074-1077.
    • (2009) Science , vol.323 , pp. 1074-1077
    • Ma, D.K.1    Jang, M.H.2    Guo, J.U.3    Kitabatake, Y.4    Chang, M.L.5    Pow-anpongkul, N.6
  • 54
    • 80053917872 scopus 로고    scopus 로고
    • Thymine DNA glycosylase can rapidly excise 5-formaylcytosine and 5-carboxylcytosine: Potential implications for active demethylation of CpG sites
    • Maiti A., Drohat A. Thymine DNA glycosylase can rapidly excise 5-formaylcytosine and 5-carboxylcytosine: Potential implications for active demethylation of CpG sites. Journal of Biological Chemistry 2011, 286:35334-35338.
    • (2011) Journal of Biological Chemistry , vol.286 , pp. 35334-35338
    • Maiti, A.1    Drohat, A.2
  • 56
    • 0031883948 scopus 로고    scopus 로고
    • Expression of long-patch and short-Patch DNA mismatch repair proteins in the embryonic and adult mammalian brain
    • Marietta C., Palombo P., Jiricny J., Brooks P.J. Expression of long-patch and short-Patch DNA mismatch repair proteins in the embryonic and adult mammalian brain. Brain Research Molecular Brain Research 1998, 53:317-320.
    • (1998) Brain Research Molecular Brain Research , vol.53 , pp. 317-320
    • Marietta, C.1    Palombo, P.2    Jiricny, J.3    Brooks, P.J.4
  • 57
    • 58849166199 scopus 로고    scopus 로고
    • Effect of 5-azacytidine on the methylation aspects of NMDA receptor NR2B gene in the cultured cortical neurons of mice
    • Marutha Ravindran C.R., Ticku M.K. Effect of 5-azacytidine on the methylation aspects of NMDA receptor NR2B gene in the cultured cortical neurons of mice. Neurochemical Research 2009, 34(2):342-350.
    • (2009) Neurochemical Research , vol.34 , Issue.2 , pp. 342-350
    • Marutha Ravindran, C.R.1    Ticku, M.K.2
  • 58
    • 79959320022 scopus 로고    scopus 로고
    • Activation of group II metabotropic glutamate receptors promotes DNA demethylation in the mouse brain
    • Matrisciano F., Dong E., Gavin D.P., Nicoletti F., Guidotti A. Activation of group II metabotropic glutamate receptors promotes DNA demethylation in the mouse brain. Molecular Pharmacology 2011, 80:174-182.
    • (2011) Molecular Pharmacology , vol.80 , pp. 174-182
    • Matrisciano, F.1    Dong, E.2    Gavin, D.P.3    Nicoletti, F.4    Guidotti, A.5
  • 59
    • 84856733701 scopus 로고    scopus 로고
    • Symmetric dimethylation of H3R2 is a newly identified histone mark that supports euchromatin maintenance
    • Migliori V., Müller J., Phalke S., Low D., Bezzi M., Mok W.C., et al. Symmetric dimethylation of H3R2 is a newly identified histone mark that supports euchromatin maintenance. Nature Structural & Molecular Biology 2012, 19:136-144.
    • (2012) Nature Structural & Molecular Biology , vol.19 , pp. 136-144
    • Migliori, V.1    Müller, J.2    Phalke, S.3    Low, D.4    Bezzi, M.5    Mok, W.C.6
  • 61
    • 33847614418 scopus 로고    scopus 로고
    • Covalent modification of DNA regulates memory formation
    • Miller C.A., Sweatt J.D. Covalent modification of DNA regulates memory formation. Neuron 2007, 53(6):857-869.
    • (2007) Neuron , vol.53 , Issue.6 , pp. 857-869
    • Miller, C.A.1    Sweatt, J.D.2
  • 62
    • 79956209852 scopus 로고    scopus 로고
    • Adult neurogenesis in the mammalian brain: Significant answers and significant questions
    • Ming G., Song H. Adult neurogenesis in the mammalian brain: Significant answers and significant questions. Neuron 2011, 70(4):687-702.
    • (2011) Neuron , vol.70 , Issue.4 , pp. 687-702
    • Ming, G.1    Song, H.2
  • 63
    • 84864127740 scopus 로고    scopus 로고
    • Long-lasting regulation of hippocampal Bdnf gene transcription after contextual conditioning
    • Mizuno K., Dempster E., Mill J., Giese K.P. Long-lasting regulation of hippocampal Bdnf gene transcription after contextual conditioning. Genes, Brain, and Behaviour 2012, (6):651-659.
    • (2012) Genes, Brain, and Behaviour , Issue.6 , pp. 651-659
    • Mizuno, K.1    Dempster, E.2    Mill, J.3    Giese, K.P.4
  • 64
    • 84868153286 scopus 로고    scopus 로고
    • Biochemical and structural characterization of the glycosylase domain of MBD4 bound to thymine and 5-hydroxymethyuracil-containing DNA
    • Morera S., Grin I., Vigouroux A., Couve S., Henriot V., Saparbaev M., et al. Biochemical and structural characterization of the glycosylase domain of MBD4 bound to thymine and 5-hydroxymethyuracil-containing DNA. Nucleic Acids Research 2012, 40:9917-9926.
    • (2012) Nucleic Acids Research , vol.40 , pp. 9917-9926
    • Morera, S.1    Grin, I.2    Vigouroux, A.3    Couve, S.4    Henriot, V.5    Saparbaev, M.6
  • 65
    • 10644282845 scopus 로고    scopus 로고
    • Activation-induced cytidine deaminase deaminates 5-methylcytosine in DNA and is expressed in pluripotent tissues: Implications for epigenetic reprogramming
    • Morgan H.D., Dean W., Coker H.A., Reik W., Petersen-Mahrt S.K. Activation-induced cytidine deaminase deaminates 5-methylcytosine in DNA and is expressed in pluripotent tissues: Implications for epigenetic reprogramming. The Journal of Biological Chemistry 2004, 279:52353-52360.
    • (2004) The Journal of Biological Chemistry , vol.279 , pp. 52353-52360
    • Morgan, H.D.1    Dean, W.2    Coker, H.A.3    Reik, W.4    Petersen-Mahrt, S.K.5
  • 66
    • 67649872341 scopus 로고    scopus 로고
    • TET2 mutations in myelodysplasia and myeloid malignancies
    • Mullighan C.G. TET2 mutations in myelodysplasia and myeloid malignancies. Nature Genetics 2009, 41:766-767.
    • (2009) Nature Genetics , vol.41 , pp. 766-767
    • Mullighan, C.G.1
  • 67
    • 0034268780 scopus 로고    scopus 로고
    • Class switch recombination and hypermutation require activation-induced cytidine deaminase (AID), a potential RNA editing enzyme
    • Muramatsu M., Kinoshita K., Fagarasan S., Yamada S., Shinkai Y., Honjo T. Class switch recombination and hypermutation require activation-induced cytidine deaminase (AID), a potential RNA editing enzyme. Cell 2000, 102:553-563.
    • (2000) Cell , vol.102 , pp. 553-563
    • Muramatsu, M.1    Kinoshita, K.2    Fagarasan, S.3    Yamada, S.4    Shinkai, Y.5    Honjo, T.6
  • 69
    • 38349044361 scopus 로고    scopus 로고
    • Activity-dependent suppression of miniature neurotransmission through the regulation of DNA methylation
    • Nelson E.D., Kavalali E.T., Monteggia L.M. Activity-dependent suppression of miniature neurotransmission through the regulation of DNA methylation. Journal of Neuroscience 2008, 28(2):395-406.
    • (2008) Journal of Neuroscience , vol.28 , Issue.2 , pp. 395-406
    • Nelson, E.D.1    Kavalali, E.T.2    Monteggia, L.M.3
  • 70
    • 84859265962 scopus 로고    scopus 로고
    • Active DNA demethylation by Gadd45 and DNA repair
    • Niehrs C., Schafer A. Active DNA demethylation by Gadd45 and DNA repair. Trends in Cell Biology 2012, 22(4):220-227.
    • (2012) Trends in Cell Biology , vol.22 , Issue.4 , pp. 220-227
    • Niehrs, C.1    Schafer, A.2
  • 72
    • 77649286162 scopus 로고    scopus 로고
    • The site specific demethylation in the 5'-regulatory area of NMDA receptor 2B subunit gene associated with CIE-induced up-regulation of transcription
    • Qiang M., Denny A., Chen J., Ticku M.K., Yan B., Henderson G. The site specific demethylation in the 5'-regulatory area of NMDA receptor 2B subunit gene associated with CIE-induced up-regulation of transcription. PLoS ONE 2010, 5(1):e8798.
    • (2010) PLoS ONE , vol.5 , Issue.1
    • Qiang, M.1    Denny, A.2    Chen, J.3    Ticku, M.K.4    Yan, B.5    Henderson, G.6
  • 73
    • 57649196594 scopus 로고    scopus 로고
    • DNA demethylation in zebrafish involves the coupling of a deaminase, a glycosylase, and Gadd45
    • Rai K., Huggins I.J., James S.R., Karpf A.R., Jones D.A., Cairns B.R. DNA demethylation in zebrafish involves the coupling of a deaminase, a glycosylase, and Gadd45. Cell 2008, 135:1201-1212.
    • (2008) Cell , vol.135 , pp. 1201-1212
    • Rai, K.1    Huggins, I.J.2    James, S.R.3    Karpf, A.R.4    Jones, D.A.5    Cairns, B.R.6
  • 77
    • 78649505459 scopus 로고    scopus 로고
    • Gemcitabine functions epigenetically by inhibiting repair Mediated DNA demethylation navarro A
    • Schäfer A., Schomacher L., Barreto G., Döderlein G., Niehrs C. Gemcitabine functions epigenetically by inhibiting repair Mediated DNA demethylation navarro A. PLoS ONE 2010, 5:e14060.
    • (2010) PLoS ONE , vol.5
    • Schäfer, A.1    Schomacher, L.2    Barreto, G.3    Döderlein, G.4    Niehrs, C.5
  • 78
    • 59849090498 scopus 로고    scopus 로고
    • TAF12 recruits and the nucleotide excision repair complex to the promoter of rRNA genes leading to active DNA demethylation
    • Schmitz K.-M., Schmitt N., Hoffmann-Rohrer U., Schäfer A., Grummt I., Mayer C. TAF12 recruits and the nucleotide excision repair complex to the promoter of rRNA genes leading to active DNA demethylation. Molecular Cell 2009, 33:344-353.
    • (2009) Molecular Cell , vol.33 , pp. 344-353
    • Schmitz, K.-M.1    Schmitt, N.2    Hoffmann-Rohrer, U.3    Schäfer, A.4    Grummt, I.5    Mayer, C.6
  • 80
    • 66049129496 scopus 로고    scopus 로고
    • The activation-induced cytidine deaminase (AID) efficiently targets DNA in nucleosomes but only during transcription
    • Shen M.H., Poirier M.G., Allen M.J., North J., Lal R., Windom J., et al. The activation-induced cytidine deaminase (AID) efficiently targets DNA in nucleosomes but only during transcription. Journal of Experimental Medicine 2009, 206(5):1057-1071.
    • (2009) Journal of Experimental Medicine , vol.206 , Issue.5 , pp. 1057-1071
    • Shen, M.H.1    Poirier, M.G.2    Allen, M.J.3    North, J.4    Lal, R.5    Windom, J.6
  • 81
  • 82
    • 84870184296 scopus 로고    scopus 로고
    • Genetic deletion of gadd45b, a regulator of active DNA demethylation, enhances long-term memory and synaptic plasticity
    • Sultan F.A., Wang J., Tront J., Liebermann D.A., Sweatt J.D. Genetic deletion of gadd45b, a regulator of active DNA demethylation, enhances long-term memory and synaptic plasticity. Journal of Neuroscience 2012, 32:17059-17066.
    • (2012) Journal of Neuroscience , vol.32 , pp. 17059-17066
    • Sultan, F.A.1    Wang, J.2    Tront, J.3    Liebermann, D.A.4    Sweatt, J.D.5
  • 83
    • 43749098985 scopus 로고    scopus 로고
    • DNA methylation landscapes: Provocative insights from epigenomics
    • Suzuki M.M., Bird A. DNA methylation landscapes: Provocative insights from epigenomics. Nature Reviews Genetics 2008, 9:465-476.
    • (2008) Nature Reviews Genetics , vol.9 , pp. 465-476
    • Suzuki, M.M.1    Bird, A.2
  • 84
    • 82255192294 scopus 로고    scopus 로고
    • 5-hmC-mediated epigenetic dynamics during postnatal neurodevelopment and aging
    • Szulwach K.E., Li X., Li Y., Song C.-X., Wu H., Dai Q., et al. 5-hmC-mediated epigenetic dynamics during postnatal neurodevelopment and aging. Nature Neuroscience 2011, 1-12.
    • (2011) Nature Neuroscience , pp. 1-12
    • Szulwach, K.E.1    Li, X.2    Li, Y.3    Song, C.-X.4    Wu, H.5    Dai, Q.6
  • 85
    • 78049401678 scopus 로고    scopus 로고
    • Sensitive enzymatic quantification of 5-hydroxymethylcytosine in genomic DNA
    • Szwagierczak A., Bultmann S., Schmidt C.S., Leonhardt H. Sensitive enzymatic quantification of 5-hydroxymethylcytosine in genomic DNA. Nucleic Acids Research 2010, 38(19):2181.
    • (2010) Nucleic Acids Research , vol.38 , Issue.19 , pp. 2181
    • Szwagierczak, A.1    Bultmann, S.2    Schmidt, C.S.3    Leonhardt, H.4
  • 86
    • 66149146320 scopus 로고    scopus 로고
    • Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1
    • Tahiliani M., Koh K.P., Shen Y., Pastor W.A., Bandukwala H., Brudno Y., et al. Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1. Science 2009, 324:930-935.
    • (2009) Science , vol.324 , pp. 930-935
    • Tahiliani, M.1    Koh, K.P.2    Shen, Y.3    Pastor, W.A.4    Bandukwala, H.5    Brudno, Y.6
  • 87
    • 67349124376 scopus 로고    scopus 로고
    • TET2 mutations and their clinical correlates in polycythemia vera, essential thrombocythemia and myelofibrosis
    • Tefferi A., Pardanani A., Lim K.-H., Abdel-Wahab O., Lasho T.L., Patel J., et al. TET2 mutations and their clinical correlates in polycythemia vera, essential thrombocythemia and myelofibrosis. Leukemia 2009, 23:905-911.
    • (2009) Leukemia , vol.23 , pp. 905-911
    • Tefferi, A.1    Pardanani, A.2    Lim, K.-H.3    Abdel-Wahab, O.4    Lasho, T.L.5    Patel, J.6
  • 88
    • 0034595638 scopus 로고    scopus 로고
    • Characterization of MyD118, Gadd45, and proliferating cell nuclear antigen (PCNA) interacting domains PCNA impedes MyD118 and Gadd45-mediated negative growth control
    • Vairapandi M., Azam N., Balliet A.G., Hofman B., Liebermann D.A. Characterization of MyD118, Gadd45, and proliferating cell nuclear antigen (PCNA) interacting domains PCNA impedes MyD118 and Gadd45-mediated negative growth control. Journal of Biological Chemistry 2000, 275(22):16810-16819.
    • (2000) Journal of Biological Chemistry , vol.275 , Issue.22 , pp. 16810-16819
    • Vairapandi, M.1    Azam, N.2    Balliet, A.G.3    Hofman, B.4    Liebermann, D.A.5
  • 89
    • 0027495023 scopus 로고
    • Enzymic removal of 5-methylcytosine from DNA by a human DNA-glycosylase
    • Vairapandi M., Duker N.J. Enzymic removal of 5-methylcytosine from DNA by a human DNA-glycosylase. Nucleic Acids Research 1993, 21(23):5323-5327.
    • (1993) Nucleic Acids Research , vol.21 , Issue.23 , pp. 5323-5327
    • Vairapandi, M.1    Duker, N.J.2
  • 90
    • 84865472870 scopus 로고    scopus 로고
    • P300/CBP-associated factor selectively regulates the extinction of conditioned fear
    • Wei W., Coelho C.M., Li X., Marek R., Yan S., Anderson S., et al. P300/CBP-associated factor selectively regulates the extinction of conditioned fear. Journal of Neuroscience 2012, 32(35):11930-11941.
    • (2012) Journal of Neuroscience , vol.32 , Issue.35 , pp. 11930-11941
    • Wei, W.1    Coelho, C.M.2    Li, X.3    Marek, R.4    Yan, S.5    Anderson, S.6
  • 91
    • 84555189745 scopus 로고    scopus 로고
    • DNA methylation: TET proteins-guardians of CpG islands?
    • Williams K., Christensen J., Helin K. DNA methylation: TET proteins-guardians of CpG islands?. EMBO Journal 2012, 13:28-35.
    • (2012) EMBO Journal , vol.13 , pp. 28-35
    • Williams, K.1    Christensen, J.2    Helin, K.3
  • 95
    • 77954842322 scopus 로고    scopus 로고
    • Dnmt3a-dependent non-promoter DNA methylation facilitates transcription of neurogenic genes
    • Wu H., Coskun V., Tao J.F., Xie W., Ge W.H., Yoshikawa K., et al. Dnmt3a-dependent non-promoter DNA methylation facilitates transcription of neurogenic genes. Science 2010, 329:444-448.
    • (2010) Science , vol.329 , pp. 444-448
    • Wu, H.1    Coskun, V.2    Tao, J.F.3    Xie, W.4    Ge, W.H.5    Yoshikawa, K.6
  • 96
    • 79954457998 scopus 로고    scopus 로고
    • Genome-wide analysis of 5-hydroxymethylcytosine distribution reveals its dual function in transcriptional regulation in mouse embryonic stem cells
    • Wu H., D'Alessio A.C., Ito S., Wang Z., Cui K., Zhao K., et al. Genome-wide analysis of 5-hydroxymethylcytosine distribution reveals its dual function in transcriptional regulation in mouse embryonic stem cells. Genes & Development 2011, 25:679-684.
    • (2011) Genes & Development , vol.25 , pp. 679-684
    • Wu, H.1    D'Alessio, A.C.2    Ito, S.3    Wang, Z.4    Cui, K.5    Zhao, K.6
  • 97
    • 79956292024 scopus 로고    scopus 로고
    • Dual functions of Tet1 in transcriptional regulation in mouse embryonic stem cells
    • Wu H., D'Alessio A.C., Ito S., Xia K., Wang Z., Cui K., et al. Dual functions of Tet1 in transcriptional regulation in mouse embryonic stem cells. Nature 2011, 473:389-393.
    • (2011) Nature , vol.473 , pp. 389-393
    • Wu, H.1    D'Alessio, A.C.2    Ito, S.3    Xia, K.4    Wang, Z.5    Cui, K.6
  • 98
    • 82955207588 scopus 로고    scopus 로고
    • Mechanisms and functions of Tet protein-mediated 5-methylcytosine oxidation
    • Wu H., Zhang Y. Mechanisms and functions of Tet protein-mediated 5-methylcytosine oxidation. Genes & Development 2010, 25:2436-2452.
    • (2010) Genes & Development , vol.25 , pp. 2436-2452
    • Wu, H.1    Zhang, Y.2
  • 99
  • 100
    • 84857331867 scopus 로고    scopus 로고
    • Base-resolution analyses of sequence and parent-of-origin dependent DNA methylation in the mouse genome
    • Xie W., Barr C.L., Kim A., Yue F., Lee A.Y., Eubanks J., et al. Base-resolution analyses of sequence and parent-of-origin dependent DNA methylation in the mouse genome. Cell 2012, 148:816-831.
    • (2012) Cell , vol.148 , pp. 816-831
    • Xie, W.1    Barr, C.L.2    Kim, A.3    Yue, F.4    Lee, A.Y.5    Eubanks, J.6
  • 101
    • 84870883633 scopus 로고    scopus 로고
    • Tet3 CXXC domain and dioxygenase activity cooperatively regulate key genes for Xenopus Eye and neural development
    • Xu Y., et al. Tet3 CXXC domain and dioxygenase activity cooperatively regulate key genes for Xenopus Eye and neural development. Cell 2012, 151:1200-1213.
    • (2012) Cell , vol.151 , pp. 1200-1213
    • Xu, Y.1
  • 102
    • 79952473660 scopus 로고    scopus 로고
    • The structural basis for selective binding of non-methylated CpG islands by the CFP1 CXXC domain
    • Xu C., Bian C., Lam R., Dong A., Min J. The structural basis for selective binding of non-methylated CpG islands by the CFP1 CXXC domain. Nature Communications 2011, 2:227.
    • (2011) Nature Communications , vol.2 , pp. 227
    • Xu, C.1    Bian, C.2    Lam, R.3    Dong, A.4    Min, J.5
  • 103
    • 78651472592 scopus 로고    scopus 로고
    • DNA methylation-mediated control of learning and memory
    • Yu N.-K., Baek S.H., Kaang B.-K. DNA methylation-mediated control of learning and memory. Molecular Brain 2011, 4:5.
    • (2011) Molecular Brain , vol.4 , pp. 5
    • Yu, N.-K.1    Baek, S.H.2    Kaang, B.-K.3
  • 104
    • 84861990517 scopus 로고    scopus 로고
    • Base-resolution analysis of 5-hydroxymethylcytosine in the mammlian genome
    • Yu M., Hon G.S., Szulwash K.E., Song C.X., Zhang L., Kim A., et al. Base-resolution analysis of 5-hydroxymethylcytosine in the mammlian genome. Cells 2012, 149:1368-1380.
    • (2012) Cells , vol.149 , pp. 1368-1380
    • Yu, M.1    Hon, G.S.2    Szulwash, K.E.3    Song, C.X.4    Zhang, L.5    Kim, A.6
  • 105
    • 0034326849 scopus 로고    scopus 로고
    • 5-Methylcytosine DNA glycosylase activity is also present in the human MBD4 (G/T mismatch glycosylase) and in a related avian sequence
    • Zhu B., Zheng Y., Angliker H., Schwarz S., Thiry S., Siegmann M., et al. 5-Methylcytosine DNA glycosylase activity is also present in the human MBD4 (G/T mismatch glycosylase) and in a related avian sequence. Nucleic Acids Research 2000, 28:4157-4165.
    • (2000) Nucleic Acids Research , vol.28 , pp. 4157-4165
    • Zhu, B.1    Zheng, Y.2    Angliker, H.3    Schwarz, S.4    Thiry, S.5    Siegmann, M.6


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