-
1
-
-
33749369772
-
Solution structure of the nonmethyl-CpG-binding CXXC domain of the leukaemia-associated MLL histone methyltransferase
-
M.D. Allen, C.G. Grummitt, C. Hilcenko, S.Y. Min, L.M. Tonkin, C.M. Johnson, S.M. Freund, M. Bycroft, and A.J. Warren Solution structure of the nonmethyl-CpG-binding CXXC domain of the leukaemia-associated MLL histone methyltransferase EMBO J. 25 2006 4503 4512
-
(2006)
EMBO J.
, vol.25
, pp. 4503-4512
-
-
Allen, M.D.1
Grummitt, C.G.2
Hilcenko, C.3
Min, S.Y.4
Tonkin, L.M.5
Johnson, C.M.6
Freund, S.M.7
Bycroft, M.8
Warren, A.J.9
-
2
-
-
0000617895
-
Cytosine methylation: The pros and cons of DNA methylation
-
T.H. Bestor, and A. Coxon Cytosine methylation: the pros and cons of DNA methylation Curr. Biol. 3 1993 384 386
-
(1993)
Curr. Biol.
, vol.3
, pp. 384-386
-
-
Bestor, T.H.1
Coxon, A.2
-
3
-
-
0022540321
-
CpG-rich islands and the function of DNA methylation
-
A.P. Bird CpG-rich islands and the function of DNA methylation Nature 321 1986 209 213
-
(1986)
Nature
, vol.321
, pp. 209-213
-
-
Bird, A.P.1
-
4
-
-
83855163995
-
Uncovering the role of 5-hydroxymethylcytosine in the epigenome
-
M.R. Branco, G. Ficz, and W. Reik Uncovering the role of 5-hydroxymethylcytosine in the epigenome Nat. Rev. Genet. 13 2012 7 13
-
(2012)
Nat. Rev. Genet.
, vol.13
, pp. 7-13
-
-
Branco, M.R.1
Ficz, G.2
Reik, W.3
-
5
-
-
66249137734
-
Mutation in TET2 in myeloid cancers
-
F. Delhommeau, S. Dupont, V. Della Valle, C. James, S. Trannoy, A. Massé, O. Kosmider, J.P. Le Couedic, F. Robert, and A. Alberdi Mutation in TET2 in myeloid cancers N. Engl. J. Med. 360 2009 2289 2301
-
(2009)
N. Engl. J. Med.
, vol.360
, pp. 2289-2301
-
-
Delhommeau, F.1
Dupont, S.2
Della Valle, V.3
James, C.4
Trannoy, S.5
Massé, A.6
Kosmider, O.7
Le Couedic, J.P.8
Robert, F.9
Alberdi, A.10
-
6
-
-
79956323623
-
Dynamic regulation of 5-hydroxymethylcytosine in mouse ES cells and during differentiation
-
G. Ficz, M.R. Branco, S. Seisenberger, F. Santos, F. Krueger, T.A. Hore, C.J. Marques, S. Andrews, and W. Reik Dynamic regulation of 5- hydroxymethylcytosine in mouse ES cells and during differentiation Nature 473 2011 398 402
-
(2011)
Nature
, vol.473
, pp. 398-402
-
-
Ficz, G.1
Branco, M.R.2
Seisenberger, S.3
Santos, F.4
Krueger, F.5
Hore, T.A.6
Marques, C.J.7
Andrews, S.8
Reik, W.9
-
7
-
-
78650826181
-
Tissue distribution of 5-hydroxymethylcytosine and search for active demethylation intermediates
-
D. Globisch, M. Münzel, M. Müller, S. Michalakis, M. Wagner, S. Koch, T. Brückl, M. Biel, and T. Carell Tissue distribution of 5-hydroxymethylcytosine and search for active demethylation intermediates PLoS ONE 5 2010 e15367
-
(2010)
PLoS ONE
, vol.5
, pp. 15367
-
-
Globisch, D.1
Münzel, M.2
Müller, M.3
Michalakis, S.4
Wagner, M.5
Koch, S.6
Brückl, T.7
Biel, M.8
Carell, T.9
-
8
-
-
80053348585
-
The role of Tet3 DNA dioxygenase in epigenetic reprogramming by oocytes
-
T.-P. Gu, F. Guo, H. Yang, H.-P. Wu, G.-F. Xu, W. Liu, Z.-G. Xie, L. Shi, X. He, and S.G. Jin The role of Tet3 DNA dioxygenase in epigenetic reprogramming by oocytes Nature 477 2011 606 610
-
(2011)
Nature
, vol.477
, pp. 606-610
-
-
Gu, T.-P.1
Guo, F.2
Yang, H.3
Wu, H.-P.4
Xu, G.-F.5
Liu, W.6
Xie, Z.-G.7
Shi, L.8
He, X.9
Jin, S.G.10
-
9
-
-
80052495940
-
Tet-mediated formation of 5-carboxylcytosine and its excision by TDG in mammalian DNA
-
Y.-F. He, B.-Z. Li, Z. Li, P. Liu, Y. Wang, Q. Tang, J. Ding, Y. Jia, Z. Chen, and L. Li Tet-mediated formation of 5-carboxylcytosine and its excision by TDG in mammalian DNA Science 333 2011 1303 1307
-
(2011)
Science
, vol.333
, pp. 1303-1307
-
-
He, Y.-F.1
Li, B.-Z.2
Li, Z.3
Liu, P.4
Wang, Y.5
Tang, Q.6
Ding, J.7
Jia, Y.8
Chen, Z.9
Li, L.10
-
10
-
-
84866908544
-
TET1 Suppresses Cancer Invasion by Activating the Tissue Inhibitors of Metalloproteinases
-
C.-H. Hsu, K.-L. Peng, M.-L. Kang, Y.-R. Chen, Y.-C. Yang, C.-H. Tsai, C.-S. Chu, Y.-M. Jeng, Y.-T. Chen, and F.-M. Lin TET1 Suppresses Cancer Invasion by Activating the Tissue Inhibitors of Metalloproteinases Cell Rep. 2 2012 568 579
-
(2012)
Cell Rep.
, vol.2
, pp. 568-579
-
-
Hsu, C.-H.1
Peng, K.-L.2
Kang, M.-L.3
Chen, Y.-R.4
Yang, Y.-C.5
Tsai, C.-H.6
Chu, C.-S.7
Jeng, Y.-M.8
Chen, Y.-T.9
Lin, F.-M.10
-
11
-
-
79952763586
-
Reprogramming of the paternal genome upon fertilization involves genome-wide oxidation of 5-methylcytosine
-
K. Iqbal, S.-G. Jin, G.P. Pfeifer, and P.E. Szabó Reprogramming of the paternal genome upon fertilization involves genome-wide oxidation of 5-methylcytosine Proc. Natl. Acad. Sci. USA 108 2011 3642 3647
-
(2011)
Proc. Natl. Acad. Sci. USA
, vol.108
, pp. 3642-3647
-
-
Iqbal, K.1
Jin, S.-G.2
Pfeifer, G.P.3
Szabó, P.E.4
-
12
-
-
77956189495
-
Role of Tet proteins in 5mC to 5hmC conversion, ES-cell self-renewal and inner cell mass specification
-
S. Ito, A.C. D'Alessio, O.V. Taranova, K. Hong, L.C. Sowers, and Y. Zhang Role of Tet proteins in 5mC to 5hmC conversion, ES-cell self-renewal and inner cell mass specification Nature 466 2010 1129 1133
-
(2010)
Nature
, vol.466
, pp. 1129-1133
-
-
Ito, S.1
D'Alessio, A.C.2
Taranova, O.V.3
Hong, K.4
Sowers, L.C.5
Zhang, Y.6
-
13
-
-
80052461558
-
Tet proteins can convert 5-methylcytosine to 5-formylcytosine and 5-carboxylcytosine
-
S. Ito, L. Shen, Q. Dai, S.C. Wu, L.B. Collins, J.A. Swenberg, C. He, and Y. Zhang Tet proteins can convert 5-methylcytosine to 5-formylcytosine and 5-carboxylcytosine Science 333 2011 1300 1303
-
(2011)
Science
, vol.333
, pp. 1300-1303
-
-
Ito, S.1
Shen, L.2
Dai, Q.3
Wu, S.C.4
Collins, L.B.5
Swenberg, J.A.6
He, C.7
Zhang, Y.8
-
14
-
-
79551587102
-
Tet1 and Tet2 regulate 5-hydroxymethylcytosine production and cell lineage specification in mouse embryonic stem cells
-
K.P. Koh, A. Yabuuchi, S. Rao, Y. Huang, K. Cunniff, J. Nardone, A. Laiho, M. Tahiliani, C.A. Sommer, and G. Mostoslavsky Tet1 and Tet2 regulate 5-hydroxymethylcytosine production and cell lineage specification in mouse embryonic stem cells Cell Stem Cell 8 2011 200 213
-
(2011)
Cell Stem Cell
, vol.8
, pp. 200-213
-
-
Koh, K.P.1
Yabuuchi, A.2
Rao, S.3
Huang, Y.4
Cunniff, K.5
Nardone, J.6
Laiho, A.7
Tahiliani, M.8
Sommer, C.A.9
Mostoslavsky, G.10
-
15
-
-
67649876132
-
Acquired mutations in TET2 are common in myelodysplastic syndromes
-
S.M. Langemeijer, R.P. Kuiper, M. Berends, R. Knops, M.G. Aslanyan, M. Massop, E. Stevens-Linders, P. van Hoogen, A.G. van Kessel, and R.A. Raymakers Acquired mutations in TET2 are common in myelodysplastic syndromes Nat. Genet. 41 2009 838 842
-
(2009)
Nat. Genet.
, vol.41
, pp. 838-842
-
-
Langemeijer, S.M.1
Kuiper, R.P.2
Berends, M.3
Knops, R.4
Aslanyan, M.G.5
Massop, M.6
Stevens-Linders, E.7
Van Hoogen, P.8
Van Kessel, A.G.9
Raymakers, R.A.10
-
16
-
-
84866419591
-
Loss of 5-hydroxymethylcytosine is an epigenetic hallmark of melanoma
-
C.G. Lian, Y. Xu, C. Ceol, F. Wu, A. Larson, K. Dresser, W. Xu, L. Tan, Y. Hu, and Q. Zhan Loss of 5-hydroxymethylcytosine is an epigenetic hallmark of melanoma Cell 150 2012 1135 1146
-
(2012)
Cell
, vol.150
, pp. 1135-1146
-
-
Lian, C.G.1
Xu, Y.2
Ceol, C.3
Wu, F.4
Larson, A.5
Dresser, K.6
Xu, W.7
Tan, L.8
Hu, Y.9
Zhan, Q.10
-
18
-
-
79960064353
-
Tet2 loss leads to increased hematopoietic stem cell self-renewal and myeloid transformation
-
K. Moran-Crusio, L. Reavie, A. Shih, O. Abdel-Wahab, D. Ndiaye-Lobry, C. Lobry, M.E. Figueroa, A. Vasanthakumar, J. Patel, and X. Zhao Tet2 loss leads to increased hematopoietic stem cell self-renewal and myeloid transformation Cancer Cell 20 2011 11 24
-
(2011)
Cancer Cell
, vol.20
, pp. 11-24
-
-
Moran-Crusio, K.1
Reavie, L.2
Shih, A.3
Abdel-Wahab, O.4
Ndiaye-Lobry, D.5
Lobry, C.6
Figueroa, M.E.7
Vasanthakumar, A.8
Patel, J.9
Zhao, X.10
-
19
-
-
52249087526
-
CXXC domain of human DNMT1 is essential for enzymatic activity
-
M. Pradhan, P.-O. Estève, H.G. Chin, M. Samaranayke, G.-D. Kim, and S. Pradhan CXXC domain of human DNMT1 is essential for enzymatic activity Biochemistry 47 2008 10000 10009
-
(2008)
Biochemistry
, vol.47
, pp. 10000-10009
-
-
Pradhan, M.1
Estève, P.-O.2
Chin, H.G.3
Samaranayke, M.4
Kim, G.-D.5
Pradhan, S.6
-
20
-
-
79960062301
-
TET2 inactivation results in pleiotropic hematopoietic abnormalities in mouse and is a recurrent event during human lymphomagenesis
-
C. Quivoron, L. Couronné, V. Della Valle, C.K. Lopez, I. Plo, O. Wagner-Ballon, M. Do Cruzeiro, F. Delhommeau, B. Arnulf, and M.-H. Stern TET2 inactivation results in pleiotropic hematopoietic abnormalities in mouse and is a recurrent event during human lymphomagenesis Cancer Cell 20 2011 25 38
-
(2011)
Cancer Cell
, vol.20
, pp. 25-38
-
-
Quivoron, C.1
Couronné, L.2
Della Valle, V.3
Lopez, C.K.4
Plo, I.5
Wagner-Ballon, O.6
Do Cruzeiro, M.7
Delhommeau, F.8
Arnulf, B.9
Stern, M.-H.10
-
21
-
-
0035839126
-
Epigenetic reprogramming in mammalian development
-
W. Reik, W. Dean, and J. Walter Epigenetic reprogramming in mammalian development Science 293 2001 1089 1093
-
(2001)
Science
, vol.293
, pp. 1089-1093
-
-
Reik, W.1
Dean, W.2
Walter, J.3
-
22
-
-
77950550446
-
BCL6 canalizes Notch-dependent transcription, excluding Mastermind-like1 from selected target genes during left-right patterning
-
D. Sakano, A. Kato, N. Parikh, K. McKnight, D. Terry, B. Stefanovic, and Y. Kato BCL6 canalizes Notch-dependent transcription, excluding Mastermind-like1 from selected target genes during left-right patterning Dev. Cell 18 2010 450 462
-
(2010)
Dev. Cell
, vol.18
, pp. 450-462
-
-
Sakano, D.1
Kato, A.2
Parikh, N.3
McKnight, K.4
Terry, D.5
Stefanovic, B.6
Kato, Y.7
-
23
-
-
66149146320
-
Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1
-
M. Tahiliani, K.P. Koh, Y. Shen, W.A. Pastor, H. Bandukwala, Y. Brudno, S. Agarwal, L.M. Iyer, D.R. Liu, L. Aravind, and A. Rao Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1 Science 324 2009 930 935
-
(2009)
Science
, vol.324
, pp. 930-935
-
-
Tahiliani, M.1
Koh, K.P.2
Shen, Y.3
Pastor, W.A.4
Bandukwala, H.5
Brudno, Y.6
Agarwal, S.7
Iyer, L.M.8
Liu, D.R.9
Aravind, L.10
Rao, A.11
-
24
-
-
84860749868
-
Tet family proteins and 5-hydroxymethylcytosine in development and disease
-
L. Tan, and Y.G. Shi Tet family proteins and 5-hydroxymethylcytosine in development and disease Development 139 2012 1895 1902
-
(2012)
Development
, vol.139
, pp. 1895-1902
-
-
Tan, L.1
Shi, Y.G.2
-
25
-
-
79956302047
-
TET1 and hydroxymethylcytosine in transcription and DNA methylation fidelity
-
K. Williams, J. Christensen, M.T. Pedersen, J.V. Johansen, P.A.C. Cloos, J. Rappsilber, and K. Helin TET1 and hydroxymethylcytosine in transcription and DNA methylation fidelity Nature 473 2011 343 348
-
(2011)
Nature
, vol.473
, pp. 343-348
-
-
Williams, K.1
Christensen, J.2
Pedersen, M.T.3
Johansen, J.V.4
Cloos, P.A.C.5
Rappsilber, J.6
Helin, K.7
-
26
-
-
79952713567
-
5-Hydroxymethylcytosine in the mammalian zygote is linked with epigenetic reprogramming
-
M. Wossidlo, T. Nakamura, K. Lepikhov, C.J. Marques, V. Zakhartchenko, M. Boiani, J. Arand, T. Nakano, W. Reik, and J. Walter 5-Hydroxymethylcytosine in the mammalian zygote is linked with epigenetic reprogramming Nat. Commun. 2 2011 241
-
(2011)
Nat. Commun.
, vol.2
, pp. 241
-
-
Wossidlo, M.1
Nakamura, T.2
Lepikhov, K.3
Marques, C.J.4
Zakhartchenko, V.5
Boiani, M.6
Arand, J.7
Nakano, T.8
Reik, W.9
Walter, J.10
-
27
-
-
79956292024
-
Dual functions of Tet1 in transcriptional regulation in mouse embryonic stem cells
-
H. Wu, A.C. D'Alessio, S. Ito, K. Xia, Z. Wang, K. Cui, K. Zhao, Y.E. Sun, and Y. Zhang Dual functions of Tet1 in transcriptional regulation in mouse embryonic stem cells Nature 473 2011 389 393
-
(2011)
Nature
, vol.473
, pp. 389-393
-
-
Wu, H.1
D'Alessio, A.C.2
Ito, S.3
Xia, K.4
Wang, Z.5
Cui, K.6
Zhao, K.7
Sun, Y.E.8
Zhang, Y.9
-
28
-
-
79952473660
-
The structural basis for selective binding of non-methylated CpG islands by the CFP1 CXXC domain
-
C. Xu, C. Bian, R. Lam, A. Dong, and J. Min The structural basis for selective binding of non-methylated CpG islands by the CFP1 CXXC domain Nat. Commun. 2 2011 227
-
(2011)
Nat. Commun.
, vol.2
, pp. 227
-
-
Xu, C.1
Bian, C.2
Lam, R.3
Dong, A.4
Min, J.5
-
29
-
-
79955948324
-
Genome-wide regulation of 5hmC, 5mC, and gene expression by Tet1 hydroxylase in mouse embryonic stem cells
-
Y. Xu, F. Wu, L. Tan, L. Kong, L. Xiong, J. Deng, A.J. Barbera, L. Zheng, H. Zhang, and S. Huang Genome-wide regulation of 5hmC, 5mC, and gene expression by Tet1 hydroxylase in mouse embryonic stem cells Mol. Cell 42 2011 451 464
-
(2011)
Mol. Cell
, vol.42
, pp. 451-464
-
-
Xu, Y.1
Wu, F.2
Tan, L.3
Kong, L.4
Xiong, L.5
Deng, J.6
Barbera, A.J.7
Zheng, L.8
Zhang, H.9
Huang, S.10
-
30
-
-
84861990517
-
Base-resolution analysis of 5-hydroxymethylcytosine in the mammalian genome
-
M. Yu, G.C. Hon, K.E. Szulwach, C.-X. Song, L. Zhang, A. Kim, X. Li, Q. Dai, Y. Shen, and B. Park Base-resolution analysis of 5-hydroxymethylcytosine in the mammalian genome Cell 149 2012 1368 1380
-
(2012)
Cell
, vol.149
, pp. 1368-1380
-
-
Yu, M.1
Hon, G.C.2
Szulwach, K.E.3
Song, C.-X.4
Zhang, L.5
Kim, A.6
Li, X.7
Dai, Q.8
Shen, Y.9
Park, B.10
-
31
-
-
0028901204
-
Anterior neurectoderm is progressively induced during gastrulation: The role of the Xenopus homeobox gene orthodenticle
-
Blitz, I.L.; and Cho, K.W. (1995). Anterior neurectoderm is progressively induced during gastrulation: the role of the Xenopus homeobox gene orthodenticle. Development 121, 993-1004.
-
(1995)
Development
, vol.121
, pp. 993-1004
-
-
Blitz, I.L.1
Cho, K.W.2
-
32
-
-
66349110246
-
Chromatin immunoprecipitation in early Xenopus laevis embryos
-
Blythe, S.A.; Reid, C.D.; Kessler, D.S.; and Klein, P.S. (2009). Chromatin immunoprecipitation in early Xenopus laevis embryos. Dev. Dyn. 238, 1422-1432.
-
(2009)
Dev. Dyn.
, vol.238
, pp. 1422-1432
-
-
Blythe, S.A.1
Reid, C.D.2
Kessler, D.S.3
Klein, P.S.4
-
33
-
-
0031043386
-
Xrx1, a novel Xenopus homeobox gene expressed during eye and pineal gland development
-
Casarosa, S.; Andreazzoli, M.; Simeone, A.; and Barsacchi, G. (1997). Xrx1, a novel Xenopus homeobox gene expressed during eye and pineal gland development. Mech. Dev. 61, 187-198.
-
(1997)
Mech. Dev.
, vol.61
, pp. 187-198
-
-
Casarosa, S.1
Andreazzoli, M.2
Simeone, A.3
Barsacchi, G.4
-
34
-
-
74549178560
-
MolProbity: All-atom structure validation for macromolecular crystallography. Acta Crystallogr
-
Chen, V.B.; Arendall, W.B.; 3rd, Headd, J.J.; Keedy, D.A.; Immormino, R.M.; Kapral, G.J.; Murray, L.W.; Richardson, J.S.; and Richardson, D.C. (2010). MolProbity: all-atom structure validation for macromolecular crystallography. Acta Crystallogr. D Biol. Crystallogr. 66, 12-21.
-
(2010)
D Biol. Crystallogr.
, vol.66
, pp. 12-21
-
-
Chen, V.B.1
Arendall Iii, W.B.2
Headd, J.J.3
Keedy, D.A.4
Immormino, R.M.5
Kapral, G.J.6
Murray, L.W.7
Richardson, J.S.8
Richardson, D.C.9
-
35
-
-
0029024046
-
Distinct expression and shared activities of members of the hedgehog gene family of Xenopus laevis
-
Ekker, S.C.; McGrew, L.L.; Lai, C.J.; Lee, J.J.; von Kessler, D.P.; Moon, R.T.; and Beachy, P.A. (1995). Distinct expression and shared activities of members of the hedgehog gene family of Xenopus laevis. Development 121, 2337-2347.
-
(1995)
Development
, vol.121
, pp. 2337-2347
-
-
Ekker, S.C.1
McGrew, L.L.2
Lai, C.J.3
Lee, J.J.4
Von Kessler, D.P.5
Moon, R.T.6
Beachy, P.A.7
-
36
-
-
77949535720
-
Features and development of Coot. Acta Crystallogr
-
Emsley, P.; Lohkamp, B.; Scott, W.G.; and Cowtan, K. (2010). Features and development of Coot. Acta Crystallogr. D Biol. Crystallogr. 66, 486-501.
-
(2010)
D Biol. Crystallogr.
, vol.66
, pp. 486-501
-
-
Emsley, P.1
Lohkamp, B.2
Scott, W.G.3
Cowtan, K.4
-
37
-
-
79953747244
-
An introduction to data reduction: Space-group determination, scaling and intensity statistics
-
Evans, P.R. (2011). An introduction to data reduction: space-group determination, scaling and intensity statistics. Acta Crystallogr. D Biol. Crystallogr. 67, 282-292.
-
(2011)
Acta Crystallogr. D Biol. Crystallogr.
, vol.67
, pp. 282-292
-
-
Evans, P.R.1
-
38
-
-
79959549552
-
Beamline 08ID-1, the prime beamline of the Canadian Macromolecular Crystallography Facility
-
Grochulski, P.; Fodje, M.N.; Gorin, J.; Labiuk, S.L.; and Berg, R. (2011). Beamline 08ID-1, the prime beamline of the Canadian Macromolecular Crystallography Facility. J. Synchrotron Radiat. 18, 681-684.
-
(2011)
J. Synchrotron Radiat.
, vol.18
, pp. 681-684
-
-
Grochulski, P.1
Fodje, M.N.2
Gorin, J.3
Labiuk, S.L.4
Berg, R.5
-
39
-
-
80053348585
-
The role of Tet3 DNA dioxygenase in epigenetic reprogramming by oocytes
-
Gu, T.-P.; Guo, F.; Yang, H.; Wu, H.-P.; Xu, G.-F.; Liu, W.; Xie, Z.-G.; Shi, L.; He, X.; Jin, S.G.; et al. (2011). The role of Tet3 DNA dioxygenase in epigenetic reprogramming by oocytes. Nature 477, 606-610.
-
(2011)
Nature
, vol.477
, pp. 606-610
-
-
Gu, T.-P.1
Guo, F.2
Yang, H.3
Wu, H.-P.4
Xu, G.-F.5
Liu, W.6
Xie, Z.-G.7
Shi, L.8
He, X.9
Jin, S.G.10
-
40
-
-
80052495940
-
Tet-mediated formation of 5-carboxylcytosine and its excision by TDG in mammalian DNA
-
He, Y.-F.; Li, B.-Z.; Li, Z.; Liu, P.; Wang, Y.; Tang, Q.; Ding, J.; Jia, Y.; Chen, Z.; Li, L.; et al. (2011). Tet-mediated formation of 5-carboxylcytosine and its excision by TDG in mammalian DNA. Science 333, 1303-1307.
-
(2011)
Science
, vol.333
, pp. 1303-1307
-
-
He, Y.-F.1
Li, B.-Z.2
Li, Z.3
Liu, P.4
Wang, Y.5
Tang, Q.6
Ding, J.7
Jia, Y.8
Chen, Z.9
Li, L.10
-
41
-
-
76449099287
-
XDS. Acta Crystallogr
-
Kabsch, W. (2010). XDS. Acta Crystallogr. D Biol. Crystallogr. 66, 125-132.
-
(2010)
D Biol. Crystallogr.
, vol.66
, pp. 125-132
-
-
Kabsch, W.1
-
42
-
-
39949084307
-
The POU homeobox protein Oct-1 regulates radial glia formation downstream of Notch signaling
-
Kiyota, T.; Kato, A.; Altmann, C.R.; and Kato, Y. (2008). The POU homeobox protein Oct-1 regulates radial glia formation downstream of Notch signaling. Dev. Biol. 315, 579-592.
-
(2008)
Dev. Biol.
, vol.315
, pp. 579-592
-
-
Kiyota, T.1
Kato, A.2
Altmann, C.R.3
Kato, Y.4
-
43
-
-
84866419591
-
Loss of 5-hydroxymethylcytosine is an epigenetic hallmark of melanoma
-
Lian, C.G.; Xu, Y.; Ceol, C.; Wu, F.; Larson, A.; Dresser, K.; Xu, W.; Tan, L.; Hu, Y.; Zhan, Q.; et al. (2012). Loss of 5-hydroxymethylcytosine is an epigenetic hallmark of melanoma. Cell 150, 1135-1146.
-
(2012)
Cell
, vol.150
, pp. 1135-1146
-
-
Lian, C.G.1
Xu, Y.2
Ceol, C.3
Wu, F.4
Larson, A.5
Dresser, K.6
Xu, W.7
Tan, L.8
Hu, Y.9
Zhan, Q.10
-
44
-
-
80052022462
-
Cistrome: An integrative platform for transcriptional regulation studies
-
Liu, T.; Ortiz, J.A.; Taing, L.; Meyer, C.A.; Lee, B.; Zhang, Y.; Shin, H.; Wong, S.S.; Ma, J.; Lei, Y.; et al. (2011). Cistrome: an integrative platform for transcriptional regulation studies. Genome Biol. 12, R83.
-
(2011)
Genome Biol.
, vol.12
-
-
Liu, T.1
Ortiz, J.A.2
Taing, L.3
Meyer, C.A.4
Lee, B.5
Zhang, Y.6
Shin, H.7
Wong, S.S.8
Ma, J.9
Lei, Y.10
-
45
-
-
0037441653
-
Structure validation by Calpha geometry: φ,ψ and Cbeta deviation
-
Lovell, S.C.; Davis, I.W.; Arendall, W.B.; 3rd, de Bakker, P.I.W.; Word, J.M.; Prisant, M.G.; Richardson, J.S.; and Richardson, D.C. (2003). Structure validation by Calpha geometry: φ,ψ and Cbeta deviation. Proteins 50, 437-450.
-
(2003)
Proteins
, vol.50
, pp. 437-450
-
-
Lovell, S.C.1
Davis, I.W.2
Arendall, W.B.3
De Bakker III, P.I.W.4
Word, J.M.5
Prisant, M.G.6
Richardson, J.S.7
Richardson, D.C.8
-
46
-
-
0003073157
-
Identification of neurogenin, a vertebrate neuronal determination gene
-
Ma, Q.; Kintner, C.; and Anderson, D.J. (1996). Identification of neurogenin, a vertebrate neuronal determination gene. Cell 87, 43-52.
-
(1996)
Cell
, vol.87
, pp. 43-52
-
-
Ma, Q.1
Kintner, C.2
Anderson, D.J.3
-
47
-
-
34447508216
-
Phaser crystallographic software
-
McCoy, A.J.; Grosse-Kunstleve, R.W.; Adams, P.D.; Winn, M.D.; Storoni, L.C.; and Read, R.J. (2007). Phaser crystallographic software. J. Appl. Cryst. 40, 658-674.
-
(2007)
J. Appl. Cryst.
, vol.40
, pp. 658-674
-
-
McCoy, A.J.1
Grosse-Kunstleve, R.W.2
Adams, P.D.3
Winn, M.D.4
Storoni, L.C.5
Read, R.J.6
-
48
-
-
0031909463
-
Xenopus Zic-related-1 and Sox-2, two factors induced by chordin, have distinct activities in the initiation of neural induction
-
Mizuseki, K.; Kishi, M.; Matsui, M.; Nakanishi, S.; and Sasai, Y. (1998). Xenopus Zic-related-1 and Sox-2, two factors induced by chordin, have distinct activities in the initiation of neural induction. Development 125, 579-587.
-
(1998)
Development
, vol.125
, pp. 579-587
-
-
Mizuseki, K.1
Kishi, M.2
Matsui, M.3
Nakanishi, S.4
Sasai, Y.5
-
49
-
-
79953763877
-
REFMAC5 for the refinement of macromolecular crystal structures
-
Murshudov, G.N.; Skubák, P.; Lebedev, A.A.; Pannu, N.S.; Steiner, R.A.; Nicholls, R.A.; Winn, M.D.; Long, F.; and Vagin, A.A. (2011). REFMAC5 for the refinement of macromolecular crystal structures. Acta Crystallogr. D Biol. Crystallogr. 67, 355-367.
-
(2011)
Acta Crystallogr. D Biol. Crystallogr.
, vol.67
, pp. 355-367
-
-
Murshudov, G.N.1
Skubák, P.2
Lebedev, A.A.3
Pannu, N.S.4
Steiner, R.A.5
Nicholls, R.A.6
Winn, M.D.7
Long, F.8
Vagin, A.A.9
-
50
-
-
0023691575
-
Gene expression in the embryonic nervous system of Xenopus laevis
-
USA
-
Richter, K.; Grunz, H.; and Dawid, I.B. (1988). Gene expression in the embryonic nervous system of Xenopus laevis. Proc. Natl. Acad. Sci. USA 85, 8086-8090.
-
(1988)
Proc. Natl. Acad. Sci.
, vol.85
, pp. 8086-8090
-
-
Richter, K.1
Grunz, H.2
Dawid, I.B.3
-
51
-
-
33846811415
-
PP2A:B56epsilon is required for eye induction and eye field separation
-
Rorick, A.M.; Mei, W.; Liette, N.L.; Phiel, C.; El-Hodiri, H.M.; and Yang, J. (2007). PP2A:B56epsilon is required for eye induction and eye field separation. Dev. Biol. 302, 477-493.
-
(2007)
Dev. Biol.
, vol.302
, pp. 477-493
-
-
Rorick, A.M.1
Mei, W.2
Liette, N.L.3
Phiel, C.4
El-Hodiri, H.M.5
Yang, J.6
-
52
-
-
77950550446
-
BCL6 canalizes Notch-dependent transcription, excluding Mastermind-like1 from selected target genes during left-right patterning
-
Sakano, D.; Kato, A.; Parikh, N.; McKnight, K.; Terry, D.; Stefanovic, B.; and Kato, Y. (2010). BCL6 canalizes Notch-dependent transcription, excluding Mastermind-like1 from selected target genes during left-right patterning. Dev. Cell 18, 450-462.
-
(2010)
Dev. Cell
, vol.18
, pp. 450-462
-
-
Sakano, D.1
Kato, A.2
Parikh, N.3
McKnight, K.4
Terry, D.5
Stefanovic, B.6
Kato, Y.7
-
54
-
-
77952485887
-
Let it flow: Morpholino knockdown in zebrafish embryos reveals a pro-angiogenic effect of the metalloprotease meprin alpha2
-
Schütte, A.; Hedrich, J.; Stöcker, W.; and Becker-Pauly, C. (2010). Let it flow: Morpholino knockdown in zebrafish embryos reveals a pro-angiogenic effect of the metalloprotease meprin alpha2. PLoS ONE 5, e8835.
-
(2010)
PLoS ONE
, vol.5
-
-
Schütte, A.1
Hedrich, J.2
Stöcker, W.3
Becker-Pauly, C.4
-
55
-
-
0013054388
-
Macromolecular phasing with SHELXE
-
Sheldrick, G.M. (2002). Macromolecular phasing with SHELXE. Z. Kristallogr. 217, 644-650.
-
(2002)
Z. Kristallogr.
, vol.217
, pp. 644-650
-
-
Sheldrick, G.M.1
-
56
-
-
0036337980
-
The transcription factor Sox9 is required for cranial neural crest development in Xenopus
-
Spokony, R.F.; Aoki, Y.; Saint-Germain, N.; Magner-Fink, E.; and Saint-Jeannet, J.-P. (2002). The transcription factor Sox9 is required for cranial neural crest development in Xenopus. Development 129, 421-432.
-
(2002)
Development
, vol.129
, pp. 421-432
-
-
Spokony, R.F.1
Aoki, Y.2
Saint-Germain, N.3
Magner-Fink, E.4
Saint-Jeannet, J.-P.5
-
57
-
-
0000560808
-
MOLREP: An Automated Program for Molecular Replacement
-
Vagin, A.; and Teplyakov, A. (1997). MOLREP: an Automated Program for Molecular Replacement. J. Appl. Cryst. 30, 1022-1025.
-
(1997)
J. Appl. Cryst.
, vol.30
, pp. 1022-1025
-
-
Vagin, A.1
Teplyakov, A.2
-
58
-
-
0035980220
-
Constitutive genomic methylation during embryonic development of Xenopus
-
Veenstra, G.J.; and Wolffe, A.P. (2001). Constitutive genomic methylation during embryonic development of Xenopus. Biochim. Biophys. Acta 1521, 39-44.
-
(2001)
Biochim. Biophys. Acta
, vol.1521
, pp. 39-44
-
-
Veenstra, G.J.1
Wolffe, A.P.2
-
59
-
-
0022325950
-
Resolution of phase ambiguity in macromolecular crystallography
-
Wang, B.-C. (1985). Resolution of phase ambiguity in macromolecular crystallography. Methods Enzymol. 115, 90-112.
-
(1985)
Methods Enzymol.
, vol.115
, pp. 90-112
-
-
Wang, B.-C.1
-
60
-
-
79952473660
-
The structural basis for selective binding of non-methylated CpG islands by the CFP1 CXXC domain
-
Xu, C.; Bian, C.; Lam, R.; Dong, A.; and Min, J. (2011a). The structural basis for selective binding of non-methylated CpG islands by the CFP1 CXXC domain. Nat. Commun. 2, 227.
-
(2011)
Nat. Commun.
, vol.2
, pp. 227
-
-
Xu, C.1
Bian, C.2
Lam, R.3
Dong, A.4
Min, J.5
-
61
-
-
79955948324
-
Genome-wide regulation of 5hmC, 5mC, and gene expression by Tet1 hydroxylase in mouse embryonic stem cells
-
Xu, Y.; Wu, F.; Tan, L.; Kong, L.; Xiong, L.; Deng, J.; Barbera, A.J.; Zheng, L.; Zhang, H.; Huang, S.; et al. (2011b). Genome-wide regulation of 5hmC, 5mC, and gene expression by Tet1 hydroxylase in mouse embryonic stem cells. Mol. Cell 42, 451-464.
-
(2011)
Mol. Cell
, vol.42
, pp. 451-464
-
-
Xu, Y.1
Wu, F.2
Tan, L.3
Kong, L.4
Xiong, L.5
Deng, J.6
Barbera, A.J.7
Zheng, L.8
Zhang, H.9
Huang, S.10
-
62
-
-
84861990517
-
Base-resolution analysis of 5-hydroxymethylcytosine in the mammalian genome
-
Yu, M.; Hon, G.C.; Szulwach, K.E.; Song, C.-X.; Zhang, L.; Kim, A.; Li, X.; Dai, Q.; Shen, Y.; Park, B.; et al. (2012). Base-resolution analysis of 5-hydroxymethylcytosine in the mammalian genome. Cell 149, 1368-1380.
-
(2012)
Cell
, vol.149
, pp. 1368-1380
-
-
Yu, M.1
Hon, G.C.2
Szulwach, K.E.3
Song, C.-X.4
Zhang, L.5
Kim, A.6
Li, X.7
Dai, Q.8
Shen, Y.9
Park, B.10
-
63
-
-
53849146020
-
Model-based analysis of ChIP-Seq (MACS)
-
Zhang, Y.; Liu, T.; Meyer, C.A.; Eeckhoute, J.; Johnson, D.S.; Bernstein, B.E.; Nusbaum, C.; Myers, R.M.; Brown, M.; Li, W.; and Liu, X.S. (2008). Model-based analysis of ChIP-Seq (MACS). Genome Biol. 9, R137.
-
(2008)
Genome Biol
, vol.9
-
-
Zhang, Y.1
Liu, T.2
Meyer, C.A.3
Eeckhoute, J.4
Johnson, D.S.5
Bernstein, B.E.6
Nusbaum, C.7
Myers, R.M.8
Brown, M.9
Li, W.10
Liu, X.S.11
-
64
-
-
0242635513
-
Specification of the vertebrate eye by a network of eye field transcription factors
-
Zuber, M.E.; Gestri, G.; Viczian, A.S.; Barsacchi, G.; and Harris, W.A. (2003). Specification of the vertebrate eye by a network of eye field transcription factors. Development 130, 5155-5167.
-
(2003)
Development
, vol.130
, pp. 5155-5167
-
-
Zuber, M.E.1
Gestri, G.2
Viczian, A.S.3
Barsacchi, G.4
Harris, W.A.5
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