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Volumn 288, Issue 12, 2013, Pages 8667-8678

Ligand binding to anion-binding exosites regulates conformational properties of thrombin

Author keywords

[No Author keywords available]

Indexed keywords

ANTI-COAGULATION; CONFORMATIONAL PROPERTIES; CURRENT PROJECTS; HYDROGEN-DEUTERIUM EXCHANGE; LIGAND COMPLEXES; LONG RANGE EFFECTS; MALDI-TOF MASS SPECTROMETRY; PLATELET ACTIVATION;

EID: 84875430212     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M112.410829     Document Type: Article
Times cited : (37)

References (55)
  • 2
    • 27144518463 scopus 로고    scopus 로고
    • Directing thrombin
    • DOI 10.1182/blood-2005-04-1710
    • Lane, D. A., Philippou, H., and Huntington, J. A. (2005) Directing thrombin. Blood 106, 2605-2612 (Pubitemid 41510730)
    • (2005) Blood , vol.106 , Issue.8 , pp. 2605-2612
    • Lane, D.A.1    Philippou, H.2    Huntington, J.A.3
  • 3
    • 34250778996 scopus 로고    scopus 로고
    • Exosites in the substrate specificity of blood coagulation reactions
    • DOI 10.1111/j.1538-7836.2007.02496.x, State of the Art 2007: XXI Congress of the International Society on Thrombosis and Haemostasis
    • Bock, P. E., Panizzi, P., and Verhamme, I. M. (2007) Exosites in the substrate specificity of blood coagulation reactions. J. Thromb. Haemost. 5, 81-94 (Pubitemid 46958821)
    • (2007) Journal of Thrombosis and Haemostasis , vol.5 , Issue.SUPPL. 1 , pp. 81-94
    • Bock, P.E.1    Panizzi, P.2    Verhamme, I.M.A.3
  • 4
    • 0030877442 scopus 로고    scopus 로고
    • Selective loss of fibrinogen clotting in a loop-less thrombin
    • DOI 10.1074/jbc.272.32.19649
    • Dang, Q. D., Sabetta, M., and Di Cera, E. (1997) Selective loss of fibrinogen clotting in a loop-less thrombin. J. Biol. Chem. 272, 19649-19651 (Pubitemid 27340051)
    • (1997) Journal of Biological Chemistry , vol.272 , Issue.32 , pp. 19649-19651
    • Dang, Q.D.1    Sabetta, M.2    Di Cera, E.3
  • 5
    • 0027050807 scopus 로고
    • The refined 1.9-A x-ray crystal structure of D-Phe-Pro-Arg chloromethylketone-inhibited human -thrombin. Structure analysis, overall structure, electrostatic properties, detailed active-site geometry, and structure-function relationships
    • Bode, W., Turk, D., and Karshikov, A. (1992) The refined 1.9-A x-ray crystal structure of D-Phe-Pro-Arg chloromethylketone-inhibited human -thrombin. Structure analysis, overall structure, electrostatic properties, detailed active-site geometry, and structure-function relationships. Protein Sci. 1, 426-471
    • (1992) Protein Sci. , vol.1 , pp. 426-471
    • Bode, W.1    Turk, D.2    Karshikov, A.3
  • 6
    • 79961220817 scopus 로고    scopus 로고
    • Rational design of potent, small, synthetic allosteric inhibitors of thrombin
    • Sidhu, P. S., Liang, A., Mehta, A. Y., Abdel Aziz, M. H., Zhou, Q., and Desai, U. R. (2011) Rational design of potent, small, synthetic allosteric inhibitors of thrombin. J. Med. Chem. 54, 5522-5531
    • (2011) J. Med. Chem. , vol.54 , pp. 5522-5531
    • Sidhu, P.S.1    Liang, A.2    Mehta, A.Y.3    Abdel Aziz, M.H.4    Zhou, Q.5    Desai, U.R.6
  • 7
    • 0036510533 scopus 로고    scopus 로고
    • Binding of exosite ligands to human thrombin. Re-evaluation of allosteric linkage between thrombin exosites I and II
    • DOI 10.1074/jbc.M110257200
    • Verhamme, I. M., Olson, S. T., Tollefsen, D. M., and Bock, P. E. (2002) Binding of exosite ligands to human thrombin. Re-evaluation of allosteric linkage between thrombin exosites I and II. J. Biol. Chem. 277, 6788-6798 (Pubitemid 34953060)
    • (2002) Journal of Biological Chemistry , vol.277 , Issue.9 , pp. 6788-6798
    • Verhamme, I.M.1    Olson, S.T.2    Tollefsen, D.M.3    Bock, P.E.4
  • 9
    • 0026781041 scopus 로고
    • The fifth and sixth growth factor-like domains of thrombomodulin bind to the anionbinding exosite of thrombin and alter its specificity
    • Ye, J., Liu, L. W., Esmon, C. T., and Johnson, A. E. (1992) The fifth and sixth growth factor-like domains of thrombomodulin bind to the anionbinding exosite of thrombin and alter its specificity. J. Biol. Chem. 267, 11023-11028
    • (1992) J. Biol. Chem. , vol.267 , pp. 11023-11028
    • Ye, J.1    Liu, L.W.2    Esmon, C.T.3    Johnson, A.E.4
  • 11
    • 57649183329 scopus 로고    scopus 로고
    • Fibrinogen-elongated - chain inhibits thrombin-induced platelet response, hindering the interaction with different receptors
    • Lancellotti, S., Rutella, S., De Filippis, V., Pozzi, N., Rocca, B., and De Cristofaro, R. (2008) Fibrinogen-elongated - chain inhibits thrombin-induced platelet response, hindering the interaction with different receptors. J. Biol. Chem. 283, 30193-30204
    • (2008) J. Biol. Chem. , vol.283 , pp. 30193-30204
    • Lancellotti, S.1    Rutella, S.2    De Filippis, V.3    Pozzi, N.4    Rocca, B.5    De Cristofaro, R.6
  • 12
    • 0030830185 scopus 로고    scopus 로고
    • Evidence for allosteric linkage between exosites 1 and 2 of thrombin
    • DOI 10.1074/jbc.272.41.25493
    • Fredenburgh, J. C., Stafford, A. R., and Weitz, J. I. (1997) Evidence for allosteric linkage between exosites 1 and 2 of thrombin. J. Biol. Chem. 272, 25493-25499 (Pubitemid 27438855)
    • (1997) Journal of Biological Chemistry , vol.272 , Issue.41 , pp. 25493-25499
    • Fredenburgh, J.C.1    Stafford, A.R.2    Weitz, J.I.3
  • 15
    • 33745144292 scopus 로고    scopus 로고
    • Conformational analysis of - peptide (410-427) interactions with thrombin anion binding exosite II
    • Sabo, T. M., Farrell, D. H., and Maurer, M. C. (2006) Conformational analysis of - peptide (410-427) interactions with thrombin anion binding exosite II. Biochemistry 45, 7434-7445
    • (2006) Biochemistry , vol.45 , pp. 7434-7445
    • Sabo, T.M.1    Farrell, D.H.2    Maurer, M.C.3
  • 16
    • 68049110271 scopus 로고    scopus 로고
    • Biophysical investigation of GpIb- binding to thrombin anion binding exosite II
    • Sabo, T. M., and Maurer, M. C. (2009) Biophysical investigation of GpIb- binding to thrombin anion binding exosite II. Biochemistry 48, 7110-7122
    • (2009) Biochemistry , vol.48 , pp. 7110-7122
    • Sabo, T.M.1    Maurer, M.C.2
  • 17
    • 27744530963 scopus 로고    scopus 로고
    • Thrombomodulin tightens the thrombin active site loops to promote protein C activation
    • DOI 10.1021/bi0510577
    • Koeppe, J. R., Seitova, A., Mather, T., and Komives, E. A. (2005) Thrombomodulin tightens the thrombin active site loops to promote protein C activation. Biochemistry 44, 14784-14791 (Pubitemid 41612258)
    • (2005) Biochemistry , vol.44 , Issue.45 , pp. 14784-14791
    • Koeppe, J.R.1    Seitova, A.2    Mather, T.3    Komives, E.A.4
  • 18
    • 0032186122 scopus 로고    scopus 로고
    • Measurement of amide hydrogen exchange by MALDI-TOF mass spectrometry
    • Mandell, J. G., Falick, A. M., and Komives, E. A. (1998) Measurement of amide hydrogen exchange by MALDI-TOF mass spectrometry. Anal. Chem. 70, 3987-3995 (Pubitemid 128484740)
    • (1998) Analytical Chemistry , vol.70 , Issue.19 , pp. 3987-3995
    • Mandell, J.G.1    Falick, A.M.2    Komives, E.A.3
  • 20
    • 77956279561 scopus 로고    scopus 로고
    • NMR resonance assignments of thrombin reveal the conformational and dynamic effects of ligation
    • Lechtenberg, B. C., Johnson, D. J., Freund, S. M., and Huntington, J. A. (2010) NMR resonance assignments of thrombin reveal the conformational and dynamic effects of ligation. Proc. Natl. Acad. Sci. U.S.A. 107, 14087-14092
    • (2010) Proc. Natl. Acad. Sci. U.S.A. , vol.107 , pp. 14087-14092
    • Lechtenberg, B.C.1    Johnson, D.J.2    Freund, S.M.3    Huntington, J.A.4
  • 22
    • 34447499926 scopus 로고    scopus 로고
    • Expression of allosteric linkage between the sodium ion binding site and exosite I of thrombin during prothrombin activation
    • DOI 10.1074/jbc.M610577200
    • Kroh, H. K., Tans, G., Nicolaes, G. A., Rosing, J., and Bock, P. E. (2007) Expression of allosteric linkage between the sodium ion binding site and exosite I of thrombin during prothrombin activation. J. Biol. Chem. 282, 16095-16104 (Pubitemid 47100360)
    • (2007) Journal of Biological Chemistry , vol.282 , Issue.22 , pp. 16095-16104
    • Kroh, H.K.1    Tans, G.2    Nicolaes, G.A.F.3    Rosing, J.4    Bock, P.E.5
  • 24
    • 0037438708 scopus 로고    scopus 로고
    • Dissecting substrate recognition by thrombin using the inactive mutant S195A
    • DOI 10.1016/S0301-4622(02)00289-2, PII S0301462202002892
    • Krem, M. M., and Di Cera, E. (2003) Dissecting substrate recognition by thrombin using the inactive mutant S195A. Biophys. Chem. 100, 315-323 (Pubitemid 36338049)
    • (2003) Biophysical Chemistry , vol.100 , Issue.1-3 , pp. 315-323
    • Krem, M.M.1    Di Cera, E.2
  • 25
    • 0028181751 scopus 로고
    • Localization and characterization of an α-thrombin-binding site on platelet glycoprotein Ib α
    • De Marco, L., Mazzucato, M., Masotti, A., and Ruggeri, Z. M. (1994) Localization and characterization of an-thrombin-binding site on platelet glycoprotein Ib -. J. Biol. Chem. 269, 6478-6484
    • (1994) J. Biol. Chem. , vol.269 , pp. 6478-6484
    • De Marco, L.1    Mazzucato, M.2    Masotti, A.3    Ruggeri, Z.M.4
  • 26
  • 27
    • 0034617203 scopus 로고    scopus 로고
    • Examining thrombin hydrolysis of the Factor XIII activation peptide segment leads to a proposal for explaining the cardioprotective effects observed with the Factor XIII V34L mutation
    • DOI 10.1074/jbc.M000209200
    • Trumbo, T. A., and Maurer, M. C. (2000) Examining thrombin hydrolysis of the factor XIII activation peptide segment leads to a proposal for explaining the cardioprotective effects observed with the factor XIII V34L mutation. J. Biol. Chem. 275, 20627-20631 (Pubitemid 30457648)
    • (2000) Journal of Biological Chemistry , vol.275 , Issue.27 , pp. 20627-20631
    • Trumbo, T.A.1    Maurer, M.C.2
  • 28
    • 2442419061 scopus 로고    scopus 로고
    • Allosteric Changes in Solvent Accessibility Observed in Thrombin upon Active Site Occupation
    • DOI 10.1021/bi0499718
    • Croy, C. H., Koeppe, J. R., Bergqvist, S., and Komives, E. A. (2004) Allosteric changes in solvent accessibility observed in thrombin upon active site occupation. Biochemistry 43, 5246-5255 (Pubitemid 38620916)
    • (2004) Biochemistry , vol.43 , Issue.18 , pp. 5246-5255
    • Croy, C.H.1    Koeppe, J.R.2    Bergqvist, S.3    Komives, E.A.4
  • 29
    • 0024544276 scopus 로고
    • High-resolution NMR studies of fibrinogen-like peptides in solution: Structure of a thrombin-bound peptide corresponding to residues 716 of the Aα chain of human fibrinogen
    • DOI 10.1021/bi00433a053
    • Ni, F., Meinwald, Y. C., Vásquez, M., and Scheraga, H. A. (1989) Highresolution NMR studies of fibrinogen-like peptides in solution. Structure of a thrombin-bound peptide corresponding to residues 7-16 of the A- chain of human fibrinogen. Biochemistry 28, 3094-3105 (Pubitemid 19099493)
    • (1989) Biochemistry , vol.28 , Issue.7 , pp. 3094-3105
    • Ni, F.1    Meinwald, Y.C.2    Vasquez, M.3    Scheraga, H.A.4
  • 30
    • 0026459469 scopus 로고
    • Solution structure of a platelet receptor peptide bound to bovine -thrombin
    • Ni, F., Ripoll, D. R., Martin, P. D., and Edwards, B. F. (1992) Solution structure of a platelet receptor peptide bound to bovine -thrombin. Biochemistry 31, 11551-11557
    • (1992) Biochemistry , vol.31 , pp. 11551-11557
    • Ni, F.1    Ripoll, D.R.2    Martin, P.D.3    Edwards, B.F.4
  • 31
    • 0024294306 scopus 로고
    • Enzymatic properties of proteolytic derivatives of human -thrombin
    • Hofsteenge, J., Braun, P. J., and Stone, S. R. (1988) Enzymatic properties of proteolytic derivatives of human -thrombin. Biochemistry 27, 2144-2151
    • (1988) Biochemistry , vol.27 , pp. 2144-2151
    • Hofsteenge, J.1    Braun, P.J.2    Stone, S.R.3
  • 33
    • 14844331743 scopus 로고    scopus 로고
    • Thrombomodulin changes the molecular surface of interaction and the rate of complex formation between thrombin and protein C
    • DOI 10.1074/jbc.M412869200
    • Xu, H., Bush, L. A., Pineda, A. O., Caccia, S., and Di Cera, E. (2005) Thrombomodulin changes the molecular surface of interaction and the rate of complex formation between thrombin and protein C. J. Biol. Chem. 280, 7956-7961 (Pubitemid 40349693)
    • (2005) Journal of Biological Chemistry , vol.280 , Issue.9 , pp. 7956-7961
    • Xu, H.1    Bush, L.A.2    Pineda, A.O.3    Caccia, S.4    Di Cera, E.5
  • 36
    • 77952030606 scopus 로고    scopus 로고
    • Crystal structure of thrombin bound to the uncleaved extracellular fragment of PAR1
    • Gandhi, P. S., Chen, Z., and Di Cera, E. (2010) Crystal structure of thrombin bound to the uncleaved extracellular fragment of PAR1. J. Biol. Chem. 285, 15393-15398
    • (2010) J. Biol. Chem. , vol.285 , pp. 15393-15398
    • Gandhi, P.S.1    Chen, Z.2    Di Cera, E.3
  • 37
    • 0034732094 scopus 로고    scopus 로고
    • Structural basis for the anticoagulant activity of the thrombin- thrombomodulin complex
    • DOI 10.1038/35006683
    • Fuentes-Prior, P., Iwanaga, Y., Huber, R., Pagila, R., Rumennik, G., Seto, M., Morser, J., Light, D. R., and Bode, W. (2000) Structural basis for the anticoagulant activity of the thrombin-thrombomodulin complex. Nature 404, 518-525 (Pubitemid 30186897)
    • (2000) Nature , vol.404 , Issue.6777 , pp. 518-525
    • Fuentes-Prior, P.1    Iwanaga, Y.2    Huber, R.3    Paglia, R.4    Rumennik, G.5    Seto, M.6    Morser, J.7    Light, D.R.8    Bode, W.9
  • 40
    • 0037200049 scopus 로고    scopus 로고
    • The thrombin epitope recognizing thrombomodulin is a highly cooperative hot spot in exosite I
    • DOI 10.1074/jbc.M205009200
    • Pineda, A. O., Cantwell, A. M., Bush, L. A., Rose, T., and Di Cera, E. (2002) The thrombin epitope recognizing thrombomodulin is a highly cooperative hot spot in exosite I. J. Biol. Chem. 277, 32015-32019 (Pubitemid 34969011)
    • (2002) Journal of Biological Chemistry , vol.277 , Issue.35 , pp. 32015-32019
    • Pineda, A.O.1    Cantwell, A.M.2    Bush, L.A.3    Rose, T.4    Cera, E.D.5
  • 41
    • 0033520366 scopus 로고    scopus 로고
    • Thrombin interacts with thrombomodulin, protein C, and thrombin-activatable fibrinolysis inhibitor via specific and distinct domains
    • Hall, S. W., Nagashima, M., Zhao, L., Morser, J., and Leung, L. L. (1999) Thrombin interacts with thrombomodulin, protein C, and thrombin-activatable fibrinolysis inhibitor via specific and distinct domains. J. Biol. Chem. 274, 25510-25516
    • (1999) J. Biol. Chem. , vol.274 , pp. 25510-25516
    • Hall, S.W.1    Nagashima, M.2    Zhao, L.3    Morser, J.4    Leung, L.L.5
  • 42
    • 70350015035 scopus 로고    scopus 로고
    • Molecular basis of thrombomodulin activation of slow thrombin
    • Adams, T. E., Li, W., and Huntington, J. A. (2009) Molecular basis of thrombomodulin activation of slow thrombin. J. Thromb. Haemost. 7, 1688-1695
    • (2009) J. Thromb. Haemost. , vol.7 , pp. 1688-1695
    • Adams, T.E.1    Li, W.2    Huntington, J.A.3
  • 43
    • 0027516679 scopus 로고
    • Evidence for common structural changes in thrombin induced by active-site or exosite binding
    • Parry, M. A., Stone, S. R., Hofsteenge, J., and Jackman, M. P. (1993) Evidence for common structural changes in thrombin induced by active-site or exosite binding. Biochem. J. 290, 665-670 (Pubitemid 23100422)
    • (1993) Biochemical Journal , vol.290 , Issue.3 , pp. 665-670
    • Parry, M.A.A.1    Stone, S.R.2    Hofsteenge, J.3    Jackman, M.P.4
  • 44
    • 0035895962 scopus 로고    scopus 로고
    • Binding of thrombin to glycoprotein Ib accelerates the hydrolysis of Par-1 on intact platelets
    • De Candia, E., Hall, S. W., Rutella, S., Landolfi, R., Andrews, R. K., and De Cristofaro, R. (2001) Binding of thrombin to glycoprotein Ib accelerates the hydrolysis of Par-1 on intact platelets. J. Biol. Chem. 276, 4692-4698
    • (2001) J. Biol. Chem. , vol.276 , pp. 4692-4698
    • De Candia, E.1    Hall, S.W.2    Rutella, S.3    Landolfi, R.4    Andrews, R.K.5    De Cristofaro, R.6
  • 45
    • 0035818425 scopus 로고    scopus 로고
    • Structural and functional mapping of the thrombin domain involved in the binding to the platelet glycoprotein Ib
    • DOI 10.1021/bi010491f
    • De Cristofaro, R., De Candia, E., Landolfi, R., Rutella, S., and Hall, S. W. (2001) Structural and functional mapping of the thrombin domain involved in the binding to the platelet glycoprotein Ib. Biochemistry 40, 13268-13273 (Pubitemid 33043542)
    • (2001) Biochemistry , vol.40 , Issue.44 , pp. 13268-13273
    • De Cristofaro, R.1    De Candia, E.2    Landolfi, R.3    Rutella, S.4    Hall, S.W.5
  • 47
    • 0036102156 scopus 로고    scopus 로고
    • Epitope mapping of a monoclonal antibody against human thrombin by H/D-exchange mass spectrometry reveals selection of a diverse sequence in a highly conserved protein
    • DOI 10.1110/ps.4670102
    • Baerga-Ortiz, A., Hughes, C. A., Mandell, J. G., and Komives, E. A. (2002) Epitope mapping of a monoclonal antibody against human thrombin by H/D-exchange mass spectrometry reveals selection of a diverse sequence in a highly conserved protein. Protein Sci. 11, 1300-1308 (Pubitemid 34547202)
    • (2002) Protein Science , vol.11 , Issue.6 , pp. 1300-1308
    • Baerga-Ortiz, A.1    Hughes, C.A.2    Mandell, J.G.3    Komives, E.A.4
  • 48
    • 0030822767 scopus 로고    scopus 로고
    • Influence of arginines 93, 97, and 101 of thrombin to its functional specificity
    • DOI 10.1021/bi9704717
    • He, X., Ye, J., Esmon, C. T., and Rezaie, A. R. (1997) Influence of arginines 93, 97, and 101 of thrombin to its functional specificity. Biochemistry 36, 8969-8976 (Pubitemid 27342544)
    • (1997) Biochemistry , vol.36 , Issue.29 , pp. 8969-8976
    • He, X.1    Ye, J.2    Esmon, C.T.3    Rezaie, A.R.4
  • 52
    • 84865763235 scopus 로고    scopus 로고
    • Meizothrombin is an unexpectedly zymogen-like variant of thrombin
    • Bradford, H. N., and Krishnaswamy, S. (2012) Meizothrombin is an unexpectedly zymogen-like variant of thrombin. J. Biol. Chem. 287, 30414-30425
    • (2012) J. Biol. Chem. , vol.287 , pp. 30414-30425
    • Bradford, H.N.1    Krishnaswamy, S.2
  • 54
    • 84864462749 scopus 로고    scopus 로고
    • Conformational selection or induced fit? A critical appraisal of the kinetic mechanism
    • Vogt, A. D., and Di Cera, E. (2012) Conformational selection or induced fit? A critical appraisal of the kinetic mechanism. Biochemistry 51, 5894-5902
    • (2012) Biochemistry , vol.51 , pp. 5894-5902
    • Vogt, A.D.1    Di Cera, E.2
  • 55
    • 77956544191 scopus 로고    scopus 로고
    • Ligand binding shuttles thrombin along a continuum of zymogen-like and proteinaselike states
    • Kamath, P., Huntington, J. A., and Krishnaswamy, S. (2010) Ligand binding shuttles thrombin along a continuum of zymogen-like and proteinaselike states. J. Biol. Chem. 285, 28651-28658
    • (2010) J. Biol. Chem. , vol.285 , pp. 28651-28658
    • Kamath, P.1    Huntington, J.A.2    Krishnaswamy, S.3


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