-
1
-
-
38949170598
-
Rab GTPases at a glance
-
doi: 10.1242/jcs.03495
-
Schwartz SL, Cao C, Pylypenko O, Rak A, Wandinger-Ness A, (2008) Rab GTPases at a glance. Journal of Cell Science 121: 246-246 doi:10.1242/jcs.03495.
-
(2008)
Journal of Cell Science
, vol.121
, pp. 246
-
-
Schwartz, S.L.1
Cao, C.2
Pylypenko, O.3
Rak, A.4
Wandinger-Ness, A.5
-
2
-
-
68049105101
-
Rab GTPases as coordinators of vesicle traffic
-
doi: 10.1038/nrm2728
-
Stenmark H, (2009) Rab GTPases as coordinators of vesicle traffic. Nat Rev Mol Cell Biol 10: 513-525 doi:10.1038/nrm2728.
-
(2009)
Nat Rev Mol Cell Biol
, vol.10
, pp. 513-525
-
-
Stenmark, H.1
-
3
-
-
78751701335
-
Rab GTPases implicated in inherited and acquired disorders
-
doi: 10.1016/j.semcdb.2010.12.005
-
Mitra S, Cheng KW, Mills GB, (2011) Rab GTPases implicated in inherited and acquired disorders. Seminars in Cell & Developmental Biology 22: 57-68 doi:10.1016/j.semcdb.2010.12.005.
-
(2011)
Seminars in Cell & Developmental Biology
, vol.22
, pp. 57-68
-
-
Mitra, S.1
Cheng, K.W.2
Mills, G.B.3
-
4
-
-
16844387479
-
The Ras superfamily at a glance
-
doi: 10.1242/jcs.01660
-
Wennerberg K, (2005) The Ras superfamily at a glance. Journal of Cell Science 118: 843-846 doi:10.1242/jcs.01660.
-
(2005)
Journal of Cell Science
, vol.118
, pp. 843-846
-
-
Wennerberg, K.1
-
5
-
-
0029966304
-
Protein prenyltransferases
-
Casey PJ, Seabra MC, (1996) Protein prenyltransferases. J Biol Chem 271: 5289.
-
(1996)
J Biol Chem
, vol.271
, pp. 5289
-
-
Casey, P.J.1
Seabra, M.C.2
-
6
-
-
2942575037
-
Structure of the Rab7:REP-1 complex: insights into the mechanism of Rab prenylation and choroideremia disease
-
doi: 10.1016/j.cell.2004.05.017
-
Rak A, Pylypenko O, Niculae A, Pyatkov K, Goody RS, et al. (2004) Structure of the Rab7:REP-1 complex: insights into the mechanism of Rab prenylation and choroideremia disease. Cell 117: 749-760 doi:10.1016/j.cell.2004.05.017.
-
(2004)
Cell
, vol.117
, pp. 749-760
-
-
Rak, A.1
Pylypenko, O.2
Niculae, A.3
Pyatkov, K.4
Goody, R.S.5
-
7
-
-
51949096166
-
Structures of RabGGTase-substrate/product complexes provide insights into the evolution of protein prenylation
-
doi: 10.1038/emboj.2008.164
-
Guo Z, Wu Y-W, Das D, Delon C, Cramer J, et al. (2008) Structures of RabGGTase-substrate/product complexes provide insights into the evolution of protein prenylation. EMBO J 27: 2444-2456 doi:10.1038/emboj.2008.164.
-
(2008)
EMBO J
, vol.27
, pp. 2444-2456
-
-
Guo, Z.1
Wu, Y.-W.2
Das, D.3
Delon, C.4
Cramer, J.5
-
8
-
-
67649690942
-
Structure of the disordered C terminus of Rab7 GTPase induced by binding to the Rab geranylgeranyl transferase catalytic complex reveals the mechanism of Rab prenylation
-
doi: 10.1074/jbc.M900579200
-
Wu Y-W, Goody RS, Abagyan R, Alexandrov K, (2009) Structure of the disordered C terminus of Rab7 GTPase induced by binding to the Rab geranylgeranyl transferase catalytic complex reveals the mechanism of Rab prenylation. J Biol Chem 284: 13185-13192 doi:10.1074/jbc.M900579200.
-
(2009)
J Biol Chem
, vol.284
, pp. 13185-13192
-
-
Wu, Y.-W.1
Goody, R.S.2
Abagyan, R.3
Alexandrov, K.4
-
9
-
-
0034714098
-
The mammalian Rab family of small GTPases: definition of family and subfamily sequence motifs suggests a mechanism for functional specificity in the Ras superfamily
-
doi: 10.1006/jmbi.2000.4010
-
Pereira-Leal JB, Seabra MC, (2000) The mammalian Rab family of small GTPases: definition of family and subfamily sequence motifs suggests a mechanism for functional specificity in the Ras superfamily. J Mol Biol 301: 1077-1087 doi:10.1006/jmbi.2000.4010.
-
(2000)
J Mol Biol
, vol.301
, pp. 1077-1087
-
-
Pereira-Leal, J.B.1
Seabra, M.C.2
-
10
-
-
23844445866
-
The structural and mechanistic basis for recycling of Rab proteins between membrane compartments
-
doi: 10.1007/s00018-005-4486-8
-
Goody RS, Rak A, Alexandrov K, (2005) The structural and mechanistic basis for recycling of Rab proteins between membrane compartments. Cell Mol Life Sci 62: 1657-1670 doi:10.1007/s00018-005-4486-8.
-
(2005)
Cell Mol Life Sci
, vol.62
, pp. 1657-1670
-
-
Goody, R.S.1
Rak, A.2
Alexandrov, K.3
-
11
-
-
0038708337
-
C. elegans ORFeome version 1.1: experimental verification of the genome annotation and resource for proteome-scale protein expression
-
doi: 10.1038/ng1140
-
Reboul J, Vaglio P, Rual J-F, Lamesch P, Martinez M, et al. (2003) C. elegans ORFeome version 1.1: experimental verification of the genome annotation and resource for proteome-scale protein expression. Nat Genet 34: 35-41 doi:10.1038/ng1140.
-
(2003)
Nat Genet
, vol.34
, pp. 35-41
-
-
Reboul, J.1
Vaglio, P.2
Rual, J.-F.3
Lamesch, P.4
Martinez, M.5
-
12
-
-
7444220617
-
C. elegans ORFeome version 3.1: increasing the coverage of ORFeome resources with improved gene predictions
-
doi: 10.1101/gr.2496804
-
Lamesch P, Milstein S, Hao T, Rosenberg J, Li N, et al. (2004) C. elegans ORFeome version 3.1: increasing the coverage of ORFeome resources with improved gene predictions. Genome Research 14: 2064-2069 doi:10.1101/gr.2496804.
-
(2004)
Genome Research
, vol.14
, pp. 2064-2069
-
-
Lamesch, P.1
Milstein, S.2
Hao, T.3
Rosenberg, J.4
Li, N.5
-
13
-
-
51949099770
-
Inquiry-based and research-based laboratory pedagogies in undergraduate science
-
doi: 10.1038/nchembio1008-577
-
Weaver GC, Russell CB, Wink DJ, (2008) Inquiry-based and research-based laboratory pedagogies in undergraduate science. Nat Chem Biol 4: 577-580 doi:10.1038/nchembio1008-577.
-
(2008)
Nat Chem Biol
, vol.4
, pp. 577-580
-
-
Weaver, G.C.1
Russell, C.B.2
Wink, D.J.3
-
15
-
-
84856138605
-
Changing the science education paradigm: from teaching facts to engaging the intellect: Science Education Colloquia Series, Spring 2011
-
Fischer CN, (2011) Changing the science education paradigm: from teaching facts to engaging the intellect: Science Education Colloquia Series, Spring 2011. Yale J Biol Med 84: 247-251.
-
(2011)
Yale J Biol Med
, vol.84
, pp. 247-251
-
-
Fischer, C.N.1
-
16
-
-
20144385350
-
Discovery-based science education: functional genomic dissection in Drosophila by undergraduate researchers
-
doi: 10.1371/journal.pbio.0030059
-
Chen J, Call GB, Beyer E, Bui C, Cespedes A, et al. (2005) Discovery-based science education: functional genomic dissection in Drosophila by undergraduate researchers. PLoS Biol 3: e59 doi:10.1371/journal.pbio.0030059.
-
(2005)
PLoS Biol
, vol.3
-
-
Chen, J.1
Call, G.B.2
Beyer, E.3
Bui, C.4
Cespedes, A.5
-
17
-
-
0035798385
-
Evolution of the Rab family of small GTP-binding proteins
-
doi: 10.1006/jmbi.2001.5072
-
Pereira-Leal JB, Seabra MC, (2001) Evolution of the Rab family of small GTP-binding proteins. J Mol Biol 313: 889-901 doi:10.1006/jmbi.2001.5072.
-
(2001)
J Mol Biol
, vol.313
, pp. 889-901
-
-
Pereira-Leal, J.B.1
Seabra, M.C.2
-
19
-
-
0025940096
-
Dominant inhibitory mutations in the Mg(2+)-binding site of RasH prevent its activation by GTP
-
Farnsworth CL, Feig LA, (1991) Dominant inhibitory mutations in the Mg(2+)-binding site of RasH prevent its activation by GTP. Mol Cell Biol 11: 4822-4829.
-
(1991)
Mol Cell Biol
, vol.11
, pp. 4822-4829
-
-
Farnsworth, C.L.1
Feig, L.A.2
-
20
-
-
0024423527
-
Mutational analysis of SEC4 suggests a cyclical mechanism for the regulation of vesicular traffic
-
Walworth NC, Goud B, Kabcenell AK, Novick PJ, (1989) Mutational analysis of SEC4 suggests a cyclical mechanism for the regulation of vesicular traffic. EMBO J 8: 1685-1693.
-
(1989)
EMBO J
, vol.8
, pp. 1685-1693
-
-
Walworth, N.C.1
Goud, B.2
Kabcenell, A.K.3
Novick, P.J.4
-
21
-
-
0027362058
-
Structure-function relationship of the small GTPase rab5
-
Li G, Stahl PD, (1993) Structure-function relationship of the small GTPase rab5. J Biol Chem 268: 24475-24480.
-
(1993)
J Biol Chem
, vol.268
, pp. 24475-24480
-
-
Li, G.1
Stahl, P.D.2
-
22
-
-
0026488394
-
GTP-binding mutants of rab1 and rab2 are potent inhibitors of vesicular transport from the endoplasmic reticulum to the Golgi complex
-
Tisdale EJ, Bourne JR, Khosravi-Far R, Der CJ, Balch WE, (1992) GTP-binding mutants of rab1 and rab2 are potent inhibitors of vesicular transport from the endoplasmic reticulum to the Golgi complex. The Journal of Cell Biology 119: 749-761.
-
(1992)
The Journal of Cell Biology
, vol.119
, pp. 749-761
-
-
Tisdale, E.J.1
Bourne, J.R.2
Khosravi-Far, R.3
Der, C.J.4
Balch, W.E.5
-
23
-
-
0028174257
-
A Rab1 mutant affecting guanine nucleotide exchange promotes disassembly of the Golgi apparatus
-
Wilson BS, Nuoffer C, Meinkoth JL, McCaffery M, Feramisco JR, et al. (1994) A Rab1 mutant affecting guanine nucleotide exchange promotes disassembly of the Golgi apparatus. The Journal of Cell Biology 125: 557-571.
-
(1994)
The Journal of Cell Biology
, vol.125
, pp. 557-571
-
-
Wilson, B.S.1
Nuoffer, C.2
Meinkoth, J.L.3
McCaffery, M.4
Feramisco, J.R.5
-
24
-
-
77956492290
-
Rab10 associates with primary cilia and the exocyst complex in renal epithelial cells
-
doi: 10.1152/ajprenal.00198.2010
-
Babbey CM, Bacallao RL, Dunn KW, (2010) Rab10 associates with primary cilia and the exocyst complex in renal epithelial cells. Am J Physiol Renal Physiol 299: F495-F506 doi:10.1152/ajprenal.00198.2010.
-
(2010)
Am J Physiol Renal Physiol
, vol.299
-
-
Babbey, C.M.1
Bacallao, R.L.2
Dunn, K.W.3
-
25
-
-
0033082344
-
How the worm was won: the C. elegans genome sequencing project
-
Wilson RK, (1999) How the worm was won: the C. elegans genome sequencing project. Trends Genet 15: 51-58.
-
(1999)
Trends Genet
, vol.15
, pp. 51-58
-
-
Wilson, R.K.1
-
26
-
-
79957613599
-
MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
-
doi: 10.1093/molbev/msr121
-
Tamura K, Peterson D, Peterson N, Stecher G, Nei M, et al. (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28: 2731-2739 doi:10.1093/molbev/msr121.
-
(2011)
Mol Biol Evol
, vol.28
, pp. 2731-2739
-
-
Tamura, K.1
Peterson, D.2
Peterson, N.3
Stecher, G.4
Nei, M.5
-
27
-
-
33747856166
-
The MPI Bioinformatics Toolkit for protein sequence analysis
-
doi: 10.1093/nar/gkl217
-
Biegert A, Mayer C, Remmert M, Söding J, Lupas AN, (2006) The MPI Bioinformatics Toolkit for protein sequence analysis. Nucleic Acids Research 34: W335-W339 doi:10.1093/nar/gkl217.
-
(2006)
Nucleic Acids Research
, vol.34
-
-
Biegert, A.1
Mayer, C.2
Remmert, M.3
Söding, J.4
Lupas, A.N.5
-
28
-
-
22044453367
-
Genetic analysis of lysosomal trafficking in Caenorhabditis elegans
-
doi: 10.1091/mbc.E05-01-0060
-
Hermann GJ, Schroeder LK, Hieb CA, Kershner AM, Rabbitts BM, et al. (2005) Genetic analysis of lysosomal trafficking in Caenorhabditis elegans. Molecular Biology of the Cell 16: 3273-3288 doi:10.1091/mbc.E05-01-0060.
-
(2005)
Molecular Biology of the Cell
, vol.16
, pp. 3273-3288
-
-
Hermann, G.J.1
Schroeder, L.K.2
Hieb, C.A.3
Kershner, A.M.4
Rabbitts, B.M.5
-
29
-
-
34547677995
-
C. elegans RPM-1 regulates axon termination and synaptogenesis through the Rab GEF GLO-4 and the Rab GTPase GLO-1
-
doi: 10.1016/j.neuron.2007.07.009
-
Grill B, Bienvenut WV, Brown HM, Ackley BD, Quadroni M, et al. (2007) C. elegans RPM-1 regulates axon termination and synaptogenesis through the Rab GEF GLO-4 and the Rab GTPase GLO-1. Neuron 55: 587-601 doi:10.1016/j.neuron.2007.07.009.
-
(2007)
Neuron
, vol.55
, pp. 587-601
-
-
Grill, B.1
Bienvenut, W.V.2
Brown, H.M.3
Ackley, B.D.4
Quadroni, M.5
-
30
-
-
0027248397
-
Isoprenylation of Rab proteins possessing a C-terminal CaaX motif
-
Joberty G, Tavitian A, Zahraoui A, (1993) Isoprenylation of Rab proteins possessing a C-terminal CaaX motif. FEBS Letters 330: 323-328.
-
(1993)
FEBS Letters
, vol.330
, pp. 323-328
-
-
Joberty, G.1
Tavitian, A.2
Zahraoui, A.3
-
31
-
-
33847744302
-
Rab GTPases containing a CAAX motif are processed post-geranylgeranylation by proteolysis and methylation
-
doi: 10.1074/jbc.M605557200
-
Leung KF, Baron R, Ali BR, Magee AI, Seabra MC, (2007) Rab GTPases containing a CAAX motif are processed post-geranylgeranylation by proteolysis and methylation. J Biol Chem 282: 1487-1497 doi:10.1074/jbc.M605557200.
-
(2007)
J Biol Chem
, vol.282
, pp. 1487-1497
-
-
Leung, K.F.1
Baron, R.2
Ali, B.R.3
Magee, A.I.4
Seabra, M.C.5
-
32
-
-
33644748150
-
Thematic review series: Lipid Posttranslational Modifications. Geranylgeranylation of Rab GTPases
-
doi: 10.1194/jlr.R500017-JLR200
-
Leung KF, (2005) Thematic review series: Lipid Posttranslational Modifications. Geranylgeranylation of Rab GTPases. J Lipid Res 47: 467-475 doi:10.1194/jlr.R500017-JLR200.
-
(2005)
J Lipid Res
, vol.47
, pp. 467-475
-
-
Leung, K.F.1
-
33
-
-
80055078598
-
Thousands of Rab GTPases for the Cell Biologist
-
doi: 10.1371/journal.pcbi.1002217.g008
-
Diekmann Y, Seixas E, Gouw M, Tavares-Cadete F, Seabra MC, et al. (2011) Thousands of Rab GTPases for the Cell Biologist. PLoS Comput Biol 7: e1002217 doi:10.1371/journal.pcbi.1002217.g008.
-
(2011)
PLoS Comput Biol
, vol.7
-
-
Diekmann, Y.1
Seixas, E.2
Gouw, M.3
Tavares-Cadete, F.4
Seabra, M.C.5
-
34
-
-
16644370412
-
Human RAS superfamily proteins and related GTPases
-
doi: 10.1126/stke.2502004re13
-
Colicelli J, (2004) Human RAS superfamily proteins and related GTPases. Sci STKE 2004: RE13 doi:10.1126/stke.2502004re13.
-
(2004)
Sci STKE
, vol.2004
-
-
Colicelli, J.1
-
35
-
-
20444467232
-
The diversity of Rab GTPases in Entamoeba histolytica
-
doi: 10.1016/j.exppara.2005.02.021
-
Saito-Nakano Y, Loftus BJ, Hall N, Nozaki T, (2005) The diversity of Rab GTPases in Entamoeba histolytica. Experimental Parasitology 110: 244-252 doi:10.1016/j.exppara.2005.02.021.
-
(2005)
Experimental Parasitology
, vol.110
, pp. 244-252
-
-
Saito-Nakano, Y.1
Loftus, B.J.2
Hall, N.3
Nozaki, T.4
-
36
-
-
56649100468
-
Large nucleotide-dependent conformational change in Rab28
-
doi: 10.1016/j.febslet.2008.11.008
-
Lee SH, Baek K, Dominguez R, (2008) Large nucleotide-dependent conformational change in Rab28. FEBS Letters 582: 4107-4111 doi:10.1016/j.febslet.2008.11.008.
-
(2008)
FEBS Letters
, vol.582
, pp. 4107-4111
-
-
Lee, S.H.1
Baek, K.2
Dominguez, R.3
-
37
-
-
0031737821
-
How good are deep phylogenetic trees?
-
Philippe H, Laurent J, (1998) How good are deep phylogenetic trees? Curr Opin Genet Dev 8: 616-623.
-
(1998)
Curr Opin Genet Dev
, vol.8
, pp. 616-623
-
-
Philippe, H.1
Laurent, J.2
-
38
-
-
0038204408
-
Phylogeny for the faint of heart: a tutorial
-
Baldauf SL, (2003) Phylogeny for the faint of heart: a tutorial. Trends Genet 19: 345-351.
-
(2003)
Trends Genet
, vol.19
, pp. 345-351
-
-
Baldauf, S.L.1
-
39
-
-
20444491634
-
A review of long-branch attraction
-
Bergsten J, (2005) A review of long-branch attraction. Cladistics 21: 163-193.
-
(2005)
Cladistics
, vol.21
, pp. 163-193
-
-
Bergsten, J.1
-
40
-
-
84862928655
-
Statistics and truth in phylogenomics
-
doi: 10.1093/molbev/msr202
-
Kumar S, Filipski AJ, Battistuzzi FU, Kosakovsky Pond SL, Tamura K, (2012) Statistics and truth in phylogenomics. Mol Biol Evol 29: 457-472 doi:10.1093/molbev/msr202.
-
(2012)
Mol Biol Evol
, vol.29
, pp. 457-472
-
-
Kumar, S.1
Filipski, A.J.2
Battistuzzi, F.U.3
Kosakovsky Pond, S.L.4
Tamura, K.5
-
41
-
-
46049091739
-
The Rab27 effector Rabphilin, unlike Granuphilin and Noc2, rapidly exchanges between secretory granules and cytosol in PC12 cells
-
doi: 10.1016/j.bbrc.2008.06.043
-
Handley MTW, Burgoyne RD, (2008) The Rab27 effector Rabphilin, unlike Granuphilin and Noc2, rapidly exchanges between secretory granules and cytosol in PC12 cells. Biochem Biophys Res Commun 373: 275-281 doi:10.1016/j.bbrc.2008.06.043.
-
(2008)
Biochem Biophys Res Commun
, vol.373
, pp. 275-281
-
-
Handley, M.T.W.1
Burgoyne, R.D.2
-
42
-
-
52549126992
-
Regulation of secretory vesicle traffic by Rab small GTPases
-
doi: 10.1007/s00018-008-8351-4
-
Fukuda M, (2008) Regulation of secretory vesicle traffic by Rab small GTPases. Cell Mol Life Sci 65: 2801-2813 doi:10.1007/s00018-008-8351-4.
-
(2008)
Cell Mol Life Sci
, vol.65
, pp. 2801-2813
-
-
Fukuda, M.1
-
43
-
-
54449097634
-
Caenorhabditis elegans Rab escort protein (REP-1) differently regulates each Rab protein function and localization in a tissue-dependent manner
-
doi: 10.1111/j.1365-2443.2008.01232.x
-
Tanaka D, Kameyama K, Okamoto H, Doi M, (2008) Caenorhabditis elegans Rab escort protein (REP-1) differently regulates each Rab protein function and localization in a tissue-dependent manner. Genes Cells 13: 1141-1157 doi:10.1111/j.1365-2443.2008.01232.x.
-
(2008)
Genes Cells
, vol.13
, pp. 1141-1157
-
-
Tanaka, D.1
Kameyama, K.2
Okamoto, H.3
Doi, M.4
-
44
-
-
22944444569
-
Structural basis of family-wide Rab GTPase recognition by rabenosyn-5
-
doi: 10.1038/nature03798
-
Eathiraj S, Pan X, Ritacco C, Lambright DG, (2005) Structural basis of family-wide Rab GTPase recognition by rabenosyn-5. Nature 436: 415-419 doi:10.1038/nature03798.
-
(2005)
Nature
, vol.436
, pp. 415-419
-
-
Eathiraj, S.1
Pan, X.2
Ritacco, C.3
Lambright, D.G.4
-
45
-
-
77954649564
-
Structural basis for Rab GTPase recognition and endosome tethering by the C2H2 zinc finger of Early Endosomal Autoantigen 1 (EEA1)
-
doi: 10.1073/pnas.1000843107
-
Mishra A, Eathiraj S, Corvera S, Lambright DG, (2010) Structural basis for Rab GTPase recognition and endosome tethering by the C2H2 zinc finger of Early Endosomal Autoantigen 1 (EEA1). Proceedings of the National Academy of Sciences 107: 10866-10871 doi:10.1073/pnas.1000843107.
-
(2010)
Proceedings of the National Academy of Sciences
, vol.107
, pp. 10866-10871
-
-
Mishra, A.1
Eathiraj, S.2
Corvera, S.3
Lambright, D.G.4
-
46
-
-
79955700248
-
Rin-like, a novel regulator of endocytosis, acts as guanine nucleotide exchange factor for Rab5a and Rab22
-
doi: 10.1016/j.bbamcr.2011.03.005
-
Woller B, Luiskandl S, Popovic M, Prieler BEM, Ikonge G, et al. (2011) Rin-like, a novel regulator of endocytosis, acts as guanine nucleotide exchange factor for Rab5a and Rab22. Biochim Biophys Acta 1813: 1198-1210 doi:10.1016/j.bbamcr.2011.03.005.
-
(2011)
Biochim Biophys Acta
, vol.1813
, pp. 1198-1210
-
-
Woller, B.1
Luiskandl, S.2
Popovic, M.3
Prieler, B.E.M.4
Ikonge, G.5
-
47
-
-
67449161490
-
Phylogeny and evolution of Rab7 and Rab9 proteins
-
doi: 10.1186/1471-2148-9-101
-
Mackiewicz P, Wyroba E, (2009) Phylogeny and evolution of Rab7 and Rab9 proteins. BMC Evol Biol 9: 101 doi:10.1186/1471-2148-9-101.
-
(2009)
BMC Evol Biol
, vol.9
, pp. 101
-
-
Mackiewicz, P.1
Wyroba, E.2
-
48
-
-
33644876458
-
TreeFam: a curated database of phylogenetic trees of animal gene families
-
doi: 10.1093/nar/gkj118
-
Li H, Coghlan A, Ruan J, Coin LJ, Hériché J-K, et al. (2006) TreeFam: a curated database of phylogenetic trees of animal gene families. Nucleic Acids Research 34: D572-D580 doi:10.1093/nar/gkj118.
-
(2006)
Nucleic Acids Research
, vol.34
-
-
Li, H.1
Coghlan, A.2
Ruan, J.3
Coin, L.J.4
Hériché, J.-K.5
-
49
-
-
0035477813
-
Exon structure conservation despite low sequence similarity: a relic of dramatic events in evolution?
-
doi: 10.1093/emboj/20.19.5354
-
Betts MJ, Guigó R, Agarwal P, Russell RB, (2001) Exon structure conservation despite low sequence similarity: a relic of dramatic events in evolution? EMBO J 20: 5354-5360 doi:10.1093/emboj/20.19.5354.
-
(2001)
EMBO J
, vol.20
, pp. 5354-5360
-
-
Betts, M.J.1
Guigó, R.2
Agarwal, P.3
Russell, R.B.4
-
50
-
-
0042921194
-
Remarkable interkingdom conservation of intron positions and massive, lineage-specific intron loss and gain in eukaryotic evolution
-
doi: 10.1016/S0960-9822(03)00558-X
-
Rogozin IB, Wolf YI, Sorokin AV, Mirkin BG, Koonin EV, (2003) Remarkable interkingdom conservation of intron positions and massive, lineage-specific intron loss and gain in eukaryotic evolution. Curr Biol 13: 1512-1517 doi:10.1016/S0960-9822(03)00558-X.
-
(2003)
Curr Biol
, vol.13
, pp. 1512-1517
-
-
Rogozin, I.B.1
Wolf, Y.I.2
Sorokin, A.V.3
Mirkin, B.G.4
Koonin, E.V.5
-
51
-
-
37549021457
-
Patterns of intron gain and conservation in eukaryotic genes
-
doi: 10.1186/1471-2148-7-192
-
Carmel L, Rogozin IB, Wolf YI, Koonin EV, (2007) Patterns of intron gain and conservation in eukaryotic genes. BMC Evol Biol 7: 192 doi:10.1186/1471-2148-7-192.
-
(2007)
BMC Evol Biol
, vol.7
, pp. 192
-
-
Carmel, L.1
Rogozin, I.B.2
Wolf, Y.I.3
Koonin, E.V.4
-
52
-
-
77954077357
-
Orthology confers intron position conservation
-
doi: 10.1186/1471-2164-11-412
-
Henricson A, Forslund K, Sonnhammer ELL, (2010) Orthology confers intron position conservation. BMC Genomics 11: 412 doi:10.1186/1471-2164-11-412.
-
(2010)
BMC Genomics
, vol.11
, pp. 412
-
-
Henricson, A.1
Forslund, K.2
Sonnhammer, E.L.L.3
-
53
-
-
32344449023
-
Application of phylogenetic algorithms to assess Rab functional relationships
-
doi: 10.1016/S0076-6879(05)03003-X
-
Collins RN, (2005) Application of phylogenetic algorithms to assess Rab functional relationships. Meth Enzymol 403: 19-28 doi:10.1016/S0076-6879(05)03003-X.
-
(2005)
Meth Enzymol
, vol.403
, pp. 19-28
-
-
Collins, R.N.1
-
54
-
-
0031010579
-
Evidence for a clade of nematodes, arthropods and other moulting animals
-
doi: 10.1038/387489a0
-
Aguinaldo AM, Turbeville JM, Linford LS, Rivera MC, Garey JR, et al. (1997) Evidence for a clade of nematodes, arthropods and other moulting animals. Nature 387: 489-493 doi:10.1038/387489a0.
-
(1997)
Nature
, vol.387
, pp. 489-493
-
-
Aguinaldo, A.M.1
Turbeville, J.M.2
Linford, L.S.3
Rivera, M.C.4
Garey, J.R.5
-
55
-
-
33644847698
-
The evolution of spliceosomal introns: patterns, puzzles and progress
-
doi: 10.1038/nrg1807
-
Roy SW, Gilbert W, (2006) The evolution of spliceosomal introns: patterns, puzzles and progress. Nat Rev Genet 7: 211-221 doi:10.1038/nrg1807.
-
(2006)
Nat Rev Genet
, vol.7
, pp. 211-221
-
-
Roy, S.W.1
Gilbert, W.2
-
56
-
-
28144460075
-
Vertebrate-type intron-rich genes in the marine annelid Platynereis dumerilii
-
doi: 10.1126/science.1119089
-
Raible F, Tessmar-Raible K, Osoegawa K, Wincker P, Jubin C, et al. (2005) Vertebrate-type intron-rich genes in the marine annelid Platynereis dumerilii. Science 310: 1325-1326 doi:10.1126/science.1119089.
-
(2005)
Science
, vol.310
, pp. 1325-1326
-
-
Raible, F.1
Tessmar-Raible, K.2
Osoegawa, K.3
Wincker, P.4
Jubin, C.5
-
57
-
-
0030885349
-
Intron "sliding" and the diversity of intron positions
-
Stoltzfus A, Logsdon JM, Palmer JD, Doolittle WF, (1997) Intron "sliding" and the diversity of intron positions. Proc Natl Acad Sci USA 94: 10739-10744.
-
(1997)
Proc Natl Acad Sci USA
, vol.94
, pp. 10739-10744
-
-
Stoltzfus, A.1
Logsdon, J.M.2
Palmer, J.D.3
Doolittle, W.F.4
-
58
-
-
0034635551
-
Rab24 is an atypical member of the Rab GTPase family
-
Erdman RA, Shellenberger KE, Overmeyer JH, Maltese WA, (2000) Rab24 is an atypical member of the Rab GTPase family. J Biol Chem 275: 3848-3856.
-
(2000)
J Biol Chem
, vol.275
, pp. 3848-3856
-
-
Erdman, R.A.1
Shellenberger, K.E.2
Overmeyer, J.H.3
Maltese, W.A.4
-
59
-
-
7444270371
-
Toward improving Caenorhabditis elegans phenome mapping with an ORFeome-based RNAi library
-
doi: 10.1101/gr.2505604
-
Rual J-F, Ceron J, Koreth J, Hao T, Nicot A-S, et al. (2004) Toward improving Caenorhabditis elegans phenome mapping with an ORFeome-based RNAi library. Genome Research 14: 2162-2168 doi:10.1101/gr.2505604.
-
(2004)
Genome Research
, vol.14
, pp. 2162-2168
-
-
Rual, J.-F.1
Ceron, J.2
Koreth, J.3
Hao, T.4
Nicot, A.-S.5
-
60
-
-
0037448540
-
Systematic functional analysis of the Caenorhabditis elegans genome using RNAi
-
doi: 10.1038/nature01278
-
Kamath RS, Fraser AG, Dong Y, Poulin G, Durbin R, et al. (2003) Systematic functional analysis of the Caenorhabditis elegans genome using RNAi. Nature 421: 231-237 doi:10.1038/nature01278.
-
(2003)
Nature
, vol.421
, pp. 231-237
-
-
Kamath, R.S.1
Fraser, A.G.2
Dong, Y.3
Poulin, G.4
Durbin, R.5
-
61
-
-
12544255323
-
The real "kingdoms" of eukaryotes
-
doi: 10.1016/j.cub.2004.08.038
-
Simpson AGB, Roger AJ, (2004) The real "kingdoms" of eukaryotes. Curr Biol 14: R693-R696 doi:10.1016/j.cub.2004.08.038.
-
(2004)
Curr Biol
, vol.14
-
-
Simpson, A.G.B.1
Roger, A.J.2
-
62
-
-
27444442657
-
The tree of eukaryotes
-
doi: 10.1016/j.tree.2005.09.005
-
Keeling PJ, Burger G, Durnford DG, Lang BF, Lee RW, et al. (2005) The tree of eukaryotes. Trends in Ecology & Evolution 20: 670-676 doi:10.1016/j.tree.2005.09.005.
-
(2005)
Trends in Ecology & Evolution
, vol.20
, pp. 670-676
-
-
Keeling, P.J.1
Burger, G.2
Durnford, D.G.3
Lang, B.F.4
Lee, R.W.5
-
63
-
-
0035166819
-
Mutant rab8 Impairs docking and fusion of rhodopsin-bearing post-Golgi membranes and causes cell death of transgenic Xenopus rods
-
Moritz OL, Tam BM, Hurd LL, Peränen J, Deretic D, et al. (2001) Mutant rab8 Impairs docking and fusion of rhodopsin-bearing post-Golgi membranes and causes cell death of transgenic Xenopus rods. Molecular Biology of the Cell 12: 2341-2351.
-
(2001)
Molecular Biology of the Cell
, vol.12
, pp. 2341-2351
-
-
Moritz, O.L.1
Tam, B.M.2
Hurd, L.L.3
Peränen, J.4
Deretic, D.5
-
64
-
-
33745596421
-
Rab10 regulates membrane transport through early endosomes of polarized Madin-Darby canine kidney cells
-
doi: 10.1091/mbc.E05-08-0799
-
Babbey CM, Ahktar N, Wang E, Chen CC-H, Grant BD, et al. (2006) Rab10 regulates membrane transport through early endosomes of polarized Madin-Darby canine kidney cells. Molecular Biology of the Cell 17: 3156-3175 doi:10.1091/mbc.E05-08-0799.
-
(2006)
Molecular Biology of the Cell
, vol.17
, pp. 3156-3175
-
-
Babbey, C.M.1
Ahktar, N.2
Wang, E.3
Chen, C.C.-H.4
Grant, B.D.5
-
65
-
-
77955879617
-
Drosophila Rab23 is involved in the regulation of the number and planar polarization of the adult cuticular hairs
-
doi: 10.1534/genetics.109.112060
-
Pataki C, Matusek T, Kurucz E, Andó I, Jenny A, et al. (2010) Drosophila Rab23 is involved in the regulation of the number and planar polarization of the adult cuticular hairs. Genetics 184: 1051-1065 doi:10.1534/genetics.109.112060.
-
(2010)
Genetics
, vol.184
, pp. 1051-1065
-
-
Pataki, C.1
Matusek, T.2
Kurucz, E.3
Andó, I.4
Jenny, A.5
-
66
-
-
82355184618
-
RNA Processing in C. elegans
-
doi: 10.1016/B978-0-12-544172-8.00007-4
-
Morton JJ, Blumenthal T, (2011) RNA Processing in C. elegans. Methods Cell Biol 106: 187-217 doi:10.1016/B978-0-12-544172-8.00007-4.
-
(2011)
Methods Cell Biol
, vol.106
, pp. 187-217
-
-
Morton, J.J.1
Blumenthal, T.2
-
67
-
-
84863077782
-
Changes in cGMP Levels Affect the Localization of EGL-4 in AWC in Caenorhabditis elegans
-
doi: 10.1371/journal.pone.0031614.g004
-
O'Halloran DM, Hamilton OS, Lee JI, Gallegos M, L'Etoile ND, (2012) Changes in cGMP Levels Affect the Localization of EGL-4 in AWC in Caenorhabditis elegans. PLoS ONE 7: e31614 doi:10.1371/journal.pone.0031614.g004.
-
(2012)
PLoS ONE
, vol.7
-
-
O'Halloran, D.M.1
Hamilton, O.S.2
Lee, J.I.3
Gallegos, M.4
L'Etoile, N.D.5
-
68
-
-
84864805551
-
Sculpting the endomembrane system in deep time: high resolution phylogenetics of Rab GTPases
-
doi: 10.1242/jcs.101378
-
Elias M, Brighouse A, Gabernet-Castello C, Field MC, Dacks JB, (2012) Sculpting the endomembrane system in deep time: high resolution phylogenetics of Rab GTPases. Journal of Cell Science 125: 2500-2508 doi:10.1242/jcs.101378.
-
(2012)
Journal of Cell Science
, vol.125
, pp. 2500-2508
-
-
Elias, M.1
Brighouse, A.2
Gabernet-Castello, C.3
Field, M.C.4
Dacks, J.B.5
-
69
-
-
0034533797
-
Mutations affecting the development of the peripheral nervous system in Drosophila: a molecular screen for novel proteins
-
Prokopenko SN, He Y, Lu Y, Bellen HJ, (2000) Mutations affecting the development of the peripheral nervous system in Drosophila: a molecular screen for novel proteins. Genetics 156: 1691-1715.
-
(2000)
Genetics
, vol.156
, pp. 1691-1715
-
-
Prokopenko, S.N.1
He, Y.2
Lu, Y.3
Bellen, H.J.4
-
70
-
-
34447300950
-
Sea Anemone Genome Reveals Ancestral Eumetazoan Gene Repertoire and Genomic Organization
-
doi: 10.1126/science.1139158
-
Putnam NH, Srivastava M, Hellsten U, Dirks B, Chapman J, et al. (2007) Sea Anemone Genome Reveals Ancestral Eumetazoan Gene Repertoire and Genomic Organization. Science 317: 86-94 doi:10.1126/science.1139158.
-
(2007)
Science
, vol.317
, pp. 86-94
-
-
Putnam, N.H.1
Srivastava, M.2
Hellsten, U.3
Dirks, B.4
Chapman, J.5
-
71
-
-
2342450579
-
Systematic searches for molecular synapomorphies in model metazoan genomes give some support for Ecdysozoa after accounting for the idiosyncrasies of Caenorhabditis elegans
-
doi: 10.1111/j.1525-142X.2004.04021.x
-
Copley RR, Aloy P, Russell RB, Telford MJ, (2004) Systematic searches for molecular synapomorphies in model metazoan genomes give some support for Ecdysozoa after accounting for the idiosyncrasies of Caenorhabditis elegans. Evol Dev 6: 164-169 doi:10.1111/j.1525-142X.2004.04021.x.
-
(2004)
Evol Dev
, vol.6
, pp. 164-169
-
-
Copley, R.R.1
Aloy, P.2
Russell, R.B.3
Telford, M.J.4
-
72
-
-
30544448979
-
Mouse Rab23 regulates hedgehog signaling from smoothened to Gli proteins
-
doi: 10.1016/j.ydbio.2005.09.022
-
Eggenschwiler JT, Bulgakov OV, Qin J, Li T, Anderson KV, (2006) Mouse Rab23 regulates hedgehog signaling from smoothened to Gli proteins. Developmental Biology 290: 1-12 doi:10.1016/j.ydbio.2005.09.022.
-
(2006)
Developmental Biology
, vol.290
, pp. 1-12
-
-
Eggenschwiler, J.T.1
Bulgakov, O.V.2
Qin, J.3
Li, T.4
Anderson, K.V.5
-
73
-
-
0035849901
-
Rab23 is an essential negative regulator of the mouse Sonic hedgehog signalling pathway
-
doi: 10.1038/35084089
-
Eggenschwiler JT, Espinoza E, Anderson KV, (2001) Rab23 is an essential negative regulator of the mouse Sonic hedgehog signalling pathway. Nature 412: 194-198 doi:10.1038/35084089.
-
(2001)
Nature
, vol.412
, pp. 194-198
-
-
Eggenschwiler, J.T.1
Espinoza, E.2
Anderson, K.V.3
-
74
-
-
41049110037
-
The N-Myc down regulated Gene1 (NDRG1) Is a Rab4a effector involved in vesicular recycling of E-cadherin
-
Kachhap SK, Faith D, Qian DZ, Shabbeer S, Galloway NL, et al. (2007) The N-Myc down regulated Gene1 (NDRG1) Is a Rab4a effector involved in vesicular recycling of E-cadherin. PLoS ONE 2: e844.
-
(2007)
PLoS ONE
, vol.2
-
-
Kachhap, S.K.1
Faith, D.2
Qian, D.Z.3
Shabbeer, S.4
Galloway, N.L.5
-
75
-
-
34548657469
-
Rab4A GTPase catenin interactions are involved in cell junction dynamics in the testis
-
doi: 10.2164/jandrol.106.002204
-
Mruk DD, Lau ASN, Sarkar O, Xia W, (2007) Rab4A GTPase catenin interactions are involved in cell junction dynamics in the testis. J Androl 28: 742-754 doi:10.2164/jandrol.106.002204.
-
(2007)
J Androl
, vol.28
, pp. 742-754
-
-
Mruk, D.D.1
Lau, A.S.N.2
Sarkar, O.3
Xia, W.4
-
76
-
-
34547798463
-
XRab40 and XCullin5 form a ubiquitin ligase complex essential for the noncanonical Wnt pathway
-
doi: 10.1038/sj.emboj.7601781
-
Lee RHK, Iioka H, Ohashi M, Iemura S-I, Natsume T, et al. (2007) XRab40 and XCullin5 form a ubiquitin ligase complex essential for the noncanonical Wnt pathway. EMBO J 26: 3592-3606 doi:10.1038/sj.emboj.7601781.
-
(2007)
EMBO J
, vol.26
, pp. 3592-3606
-
-
Lee, R.H.K.1
Iioka, H.2
Ohashi, M.3
Iemura, S.-I.4
Natsume, T.5
-
77
-
-
65749084249
-
VEGFR1 (Flt1) regulates Rab4 recycling to control fibronectin polymerization and endothelial vessel branching
-
doi: 10.1111/j.1600-0854.2009.00898.x
-
Jones MC, Caswell PT, Moran-Jones K, Roberts M, Barry ST, et al. (2009) VEGFR1 (Flt1) regulates Rab4 recycling to control fibronectin polymerization and endothelial vessel branching. Traffic 10: 754-766 doi:10.1111/j.1600-0854.2009.00898.x.
-
(2009)
Traffic
, vol.10
, pp. 754-766
-
-
Jones, M.C.1
Caswell, P.T.2
Moran-Jones, K.3
Roberts, M.4
Barry, S.T.5
-
78
-
-
40549141073
-
The evolution of the Ecdysozoa
-
doi: 10.1098/rstb.2007.2243
-
Telford MJ, Bourlat SJ, Economou A, Papillon D, Rota-Stabelli O, (2008) The evolution of the Ecdysozoa. Philos Trans R Soc Lond, B, Biol Sci 363: 1529-1537 doi:10.1098/rstb.2007.2243.
-
(2008)
Philos Trans R Soc Lond, B, Biol Sci
, vol.363
, pp. 1529-1537
-
-
Telford, M.J.1
Bourlat, S.J.2
Economou, A.3
Papillon, D.4
Rota-Stabelli, O.5
-
79
-
-
0032509303
-
The taxonomy of developmental control in Caenorhabditis elegans
-
Ruvkun G, Hobert O, (1998) The taxonomy of developmental control in Caenorhabditis elegans. Science 282: 2033.
-
(1998)
Science
, vol.282
, pp. 2033
-
-
Ruvkun, G.1
Hobert, O.2
-
80
-
-
77956621707
-
The nematode story: Hox gene loss and rapid evolution
-
Aboobaker A, Blaxter M, (2010) The nematode story: Hox gene loss and rapid evolution. Adv Exp Med Biol 689: 101-110.
-
(2010)
Adv Exp Med Biol
, vol.689
, pp. 101-110
-
-
Aboobaker, A.1
Blaxter, M.2
-
81
-
-
79956308325
-
Mechanisms and functions of Hedgehog signalling across the metazoa
-
doi: 10.1038/nrg2984
-
Ingham PW, Nakano Y, Seger C, (2011) Mechanisms and functions of Hedgehog signalling across the metazoa. Nat Rev Genet 12: 393-406 doi:10.1038/nrg2984.
-
(2011)
Nat Rev Genet
, vol.12
, pp. 393-406
-
-
Ingham, P.W.1
Nakano, Y.2
Seger, C.3
-
82
-
-
77957348884
-
Rab protein evolution and the history of the eukaryotic endomembrane system
-
doi: 10.1007/s00018-010-0436-1
-
Brighouse A, Dacks JB, Field MC, (2010) Rab protein evolution and the history of the eukaryotic endomembrane system. Cell Mol Life Sci 67: 3449-3465 doi:10.1007/s00018-010-0436-1.
-
(2010)
Cell Mol Life Sci
, vol.67
, pp. 3449-3465
-
-
Brighouse, A.1
Dacks, J.B.2
Field, M.C.3
-
83
-
-
33847648364
-
Control systems for membrane fusion in the ancestral eukaryote; evolution of tethering complexes and SM proteins
-
doi: 10.1186/1471-2148-7-29
-
Koumandou VL, Dacks JB, Coulson RMR, Field MC, (2007) Control systems for membrane fusion in the ancestral eukaryote; evolution of tethering complexes and SM proteins. BMC Evol Biol 7: 29 doi:10.1186/1471-2148-7-29.
-
(2007)
BMC Evol Biol
, vol.7
, pp. 29
-
-
Koumandou, V.L.1
Dacks, J.B.2
Coulson, R.M.R.3
Field, M.C.4
-
84
-
-
42149109880
-
In contrast to the nematode and fruit fly all 9 intron positions of the sea anemone lamin gene are conserved in human lamin genes
-
doi: 10.1016/j.ejcb.2008.01.003
-
ZIMEK A, WEBER K, (2008) In contrast to the nematode and fruit fly all 9 intron positions of the sea anemone lamin gene are conserved in human lamin genes. Eur J Cell Biol 87: 305-309 doi:10.1016/j.ejcb.2008.01.003.
-
(2008)
Eur J Cell Biol
, vol.87
, pp. 305-309
-
-
Zimek, A.1
Weber, K.2
-
85
-
-
42949174108
-
Comparative genomic analysis of fungal genomes reveals intron-rich ancestors
-
doi: 10.1186/gb-2007-8-10-r223
-
Stajich JE, Dietrich FS, Roy SW, (2007) Comparative genomic analysis of fungal genomes reveals intron-rich ancestors. Genome Biol 8: R223 doi:10.1186/gb-2007-8-10-r223.
-
(2007)
Genome Biol
, vol.8
-
-
Stajich, J.E.1
Dietrich, F.S.2
Roy, S.W.3
-
86
-
-
9144264169
-
A map of the interactome network of the metazoan C. elegans
-
doi: 10.1126/science.1091403
-
Li S, Armstrong CM, Bertin N, Ge H, Milstein S, et al. (2004) A map of the interactome network of the metazoan C. elegans. Science 303: 540-543 doi:10.1126/science.1091403.
-
(2004)
Science
, vol.303
, pp. 540-543
-
-
Li, S.1
Armstrong, C.M.2
Bertin, N.3
Ge, H.4
Milstein, S.5
-
87
-
-
23144441321
-
Systematic analysis of genes required for synapse structure and function
-
doi: 10.1038/nature03809
-
Sieburth D, Ch'ng Q, Dybbs M, Tavazoie M, Kennedy S, et al. (2005) Systematic analysis of genes required for synapse structure and function. Nature 436: 510-517 doi:10.1038/nature03809.
-
(2005)
Nature
, vol.436
, pp. 510-517
-
-
Sieburth, D.1
Ch'ng, Q.2
Dybbs, M.3
Tavazoie, M.4
Kennedy, S.5
-
88
-
-
74749103945
-
UNC-83 coordinates kinesin-1 and dynein activities at the nuclear envelope during nuclear migration
-
doi: 10.1016/j.ydbio.2009.12.004
-
Fridolfsson HN, Ly N, Meyerzon M, Starr DA, (2010) UNC-83 coordinates kinesin-1 and dynein activities at the nuclear envelope during nuclear migration. Developmental Biology 338: 237-250 doi:10.1016/j.ydbio.2009.12.004.
-
(2010)
Developmental Biology
, vol.338
, pp. 237-250
-
-
Fridolfsson, H.N.1
Ly, N.2
Meyerzon, M.3
Starr, D.A.4
-
89
-
-
79955579256
-
PDP-1 Links the TGF-β and IIS Pathways to Regulate Longevity, Development, and Metabolism
-
doi: 10.1371/journal.pgen.1001377.t003
-
Narasimhan SD, Yen K, Bansal A, Kwon E-S, Padmanabhan S, et al. (2011) PDP-1 Links the TGF-β and IIS Pathways to Regulate Longevity, Development, and Metabolism. PLoS Genet 7: e1001377 doi:10.1371/journal.pgen.1001377.t003.
-
(2011)
PLoS Genet
, vol.7
-
-
Narasimhan, S.D.1
Yen, K.2
Bansal, A.3
Kwon, E.-S.4
Padmanabhan, S.5
-
90
-
-
79960293259
-
The Caenorhabditis elegans paxillin orthologue, PXL-1, is required for pharyngeal muscle contraction and for viability
-
doi: 10.1091/mbc.E10-12-0941
-
Warner A, Qadota H, Benian GM, Vogl AW, Moerman DG, (2011) The Caenorhabditis elegans paxillin orthologue, PXL-1, is required for pharyngeal muscle contraction and for viability. Molecular Biology of the Cell 22: 2551-2563 doi:10.1091/mbc.E10-12-0941.
-
(2011)
Molecular Biology of the Cell
, vol.22
, pp. 2551-2563
-
-
Warner, A.1
Qadota, H.2
Benian, G.M.3
Vogl, A.W.4
Moerman, D.G.5
-
91
-
-
56049118227
-
A "FLP-Out" system for controlled gene expression in Caenorhabditis elegans
-
doi: 10.1534/genetics.108.090274
-
Voutev R, Hubbard EJA, (2008) A "FLP-Out" system for controlled gene expression in Caenorhabditis elegans. Genetics 180: 103-119 doi:10.1534/genetics.108.090274.
-
(2008)
Genetics
, vol.180
, pp. 103-119
-
-
Voutev, R.1
Hubbard, E.J.A.2
-
92
-
-
79957554781
-
MosSCI and Gateway Compatible Plasmid Toolkit for Constitutive and Inducible Expression of Transgenes in the C. elegans Germline
-
doi: 10.1371/journal.pone.0020082.t001
-
Zeiser E, Frøkjær-Jensen C, Jorgensen E, Ahringer J, (2011) MosSCI and Gateway Compatible Plasmid Toolkit for Constitutive and Inducible Expression of Transgenes in the C. elegans Germline. PLoS ONE 6: e20082 doi:10.1371/journal.pone.0020082.t001.
-
(2011)
PLoS ONE
, vol.6
-
-
Zeiser, E.1
Frøkjær-Jensen, C.2
Jorgensen, E.3
Ahringer, J.4
-
93
-
-
67651171368
-
LRRK2 modulates vulnerability to mitochondrial dysfunction in Caenorhabditis elegans
-
doi: 10.1523/JNEUROSCI.2281-09.2009
-
Saha S, Guillily MD, Ferree A, Lanceta J, Chan D, et al. (2009) LRRK2 modulates vulnerability to mitochondrial dysfunction in Caenorhabditis elegans. Journal of Neuroscience 29: 9210-9218 doi:10.1523/JNEUROSCI.2281-09.2009.
-
(2009)
Journal of Neuroscience
, vol.29
, pp. 9210-9218
-
-
Saha, S.1
Guillily, M.D.2
Ferree, A.3
Lanceta, J.4
Chan, D.5
-
94
-
-
0037022657
-
Proteome-scale purification of human proteins from bacteria
-
doi: 10.1073/pnas.042684199
-
Braun P, Hu Y, Shen B, Halleck A, Koundinya M, et al. (2002) Proteome-scale purification of human proteins from bacteria. Proc Natl Acad Sci USA 99: 2654-2659 doi:10.1073/pnas.042684199.
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 2654-2659
-
-
Braun, P.1
Hu, Y.2
Shen, B.3
Halleck, A.4
Koundinya, M.5
-
95
-
-
68349130472
-
High yield expression of biologically active recombinant full length human tuftelin protein in baculovirus-infected insect cells
-
doi: 10.1016/j.pep.2009.06.008
-
Shay B, Gruenbaum-Cohen Y, Tucker AS, Taylor AL, Rosenfeld E, et al. (2009) High yield expression of biologically active recombinant full length human tuftelin protein in baculovirus-infected insect cells. Protein Expr Purif 68: 90-98 doi:10.1016/j.pep.2009.06.008.
-
(2009)
Protein Expr Purif
, vol.68
, pp. 90-98
-
-
Shay, B.1
Gruenbaum-Cohen, Y.2
Tucker, A.S.3
Taylor, A.L.4
Rosenfeld, E.5
-
96
-
-
46749156739
-
Large scale screening for novel rab effectors reveals unexpected broad Rab binding specificity
-
doi: 10.1074/mcp.M700569-MCP200
-
Fukuda M, Kanno E, Ishibashi K, Itoh T, (2008) Large scale screening for novel rab effectors reveals unexpected broad Rab binding specificity. Molecular & Cellular Proteomics 7: 1031-1042 doi:10.1074/mcp.M700569-MCP200.
-
(2008)
Molecular & Cellular Proteomics
, vol.7
, pp. 1031-1042
-
-
Fukuda, M.1
Kanno, E.2
Ishibashi, K.3
Itoh, T.4
-
97
-
-
84863223283
-
Caenorhabditis elegans screen reveals role of PAR-5 in RAB-11-recycling endosome positioning and apicobasal cell polarity
-
doi: 10.1038/ncb2508
-
Winter JF, Höpfner S, Korn K, Farnung BO, Bradshaw CR, et al. (2012) Caenorhabditis elegans screen reveals role of PAR-5 in RAB-11-recycling endosome positioning and apicobasal cell polarity. Nat Cell Biol 14: 666-676 doi:10.1038/ncb2508.
-
(2012)
Nat Cell Biol
, vol.14
, pp. 666-676
-
-
Winter, J.F.1
Höpfner, S.2
Korn, K.3
Farnung, B.O.4
Bradshaw, C.R.5
-
98
-
-
84861884834
-
Rabx-5 Regulates RAB-5 Early Endosomal Compartments and Synaptic Vesicles in C. elegans
-
doi: 10.1371/journal.pone.0037930.g007
-
Sann SB, Crane MM, Lu H, Jin Y, (2012) Rabx-5 Regulates RAB-5 Early Endosomal Compartments and Synaptic Vesicles in C. elegans. PLoS ONE 7: e37930 doi:10.1371/journal.pone.0037930.g007.
-
(2012)
PLoS ONE
, vol.7
-
-
Sann, S.B.1
Crane, M.M.2
Lu, H.3
Jin, Y.4
-
99
-
-
0032143533
-
Prenylation of Rab8 GTPase by type I and type II geranylgeranyl transferases
-
Wilson AL, Erdman RA, Castellano F, Maltese WA, (1998) Prenylation of Rab8 GTPase by type I and type II geranylgeranyl transferases. Biochem J 333 (Pt 3): 497-504.
-
(1998)
Biochem J
, vol.333
, Issue.Pt 3
, pp. 497-504
-
-
Wilson, A.L.1
Erdman, R.A.2
Castellano, F.3
Maltese, W.A.4
-
100
-
-
34247648721
-
Towards Complete Sets of Farnesylated and Geranylgeranylated Proteins
-
doi: 10.1371/journal.pcbi.0030066
-
Maurer-Stroh S, Koranda M, Benetka W, Schneider G, Sirota FL, et al. (2007) Towards Complete Sets of Farnesylated and Geranylgeranylated Proteins. PLoS Comput Biol 3: e66 doi:10.1371/journal.pcbi.0030066.
-
(2007)
PLoS Comput Biol
, vol.3
-
-
Maurer-Stroh, S.1
Koranda, M.2
Benetka, W.3
Schneider, G.4
Sirota, F.L.5
-
101
-
-
79956328440
-
Inquiry-Based Writing in the Laboratory Course
-
doi: 10.1126/science.1200353
-
Moskovitz C, Kellogg D, (2011) Inquiry-Based Writing in the Laboratory Course. Science 332: 919-920 doi:10.1126/science.1200353.
-
(2011)
Science
, vol.332
, pp. 919-920
-
-
Moskovitz, C.1
Kellogg, D.2
-
103
-
-
15744392545
-
Survey of Undergraduate Research Experiences (SURE): first findings
-
doi: 10.1187/cbe.04-07-0045
-
Lopatto D, (2004) Survey of Undergraduate Research Experiences (SURE): first findings. Cell biology education 3: 270-277 doi:10.1187/cbe.04-07-0045.
-
(2004)
Cell Biology Education
, vol.3
, pp. 270-277
-
-
Lopatto, D.1
-
104
-
-
38349068761
-
Undergraduate research experiences support science career decisions and active learning
-
doi: 10.1187/cbe.07-06-0039
-
Lopatto D, (2007) Undergraduate research experiences support science career decisions and active learning. CBE life sciences education 6: 297-306 doi:10.1187/cbe.07-06-0039.
-
(2007)
CBE Life Sciences Education
, vol.6
, pp. 297-306
-
-
Lopatto, D.1
-
105
-
-
78049456746
-
Bringing the excitement and motivation of research to students; Using inquiry and research-based learning in a year-long biochemistry laboratory: Part II-research-based laboratory-a semester-long research approach using malate dehydrogenase as a research model
-
doi: 10.1002/bmb.20401
-
Knutson K, Smith J, Nichols P, Wallert MA, Provost JJ, (2010) Bringing the excitement and motivation of research to students; Using inquiry and research-based learning in a year-long biochemistry laboratory: Part II-research-based laboratory-a semester-long research approach using malate dehydrogenase as a research model. Biochem Mol Biol Educ 38: 324-329 doi:10.1002/bmb.20401.
-
(2010)
Biochem Mol Biol Educ
, vol.38
, pp. 324-329
-
-
Knutson, K.1
Smith, J.2
Nichols, P.3
Wallert, M.A.4
Provost, J.J.5
-
106
-
-
0003608696
-
-
National Research Council US, National Academies Press. pp. Available,. Accessed 2012 Oct 27
-
National Research Council US (1996) National Science Education Standards. National Academies Press. pp. Available:http://books.nap.edu/openbook.php?record_id=4962&page=1. Accessed 2012 Oct 27.
-
(1996)
National Science Education Standards
-
-
-
107
-
-
3042751918
-
Fueling educational reform: Bio2010-biology for the future
-
doi: 10.1187/cbe.02-11-0053, Brenner K, Bio2010 Committee
-
Brenner K, Bio2010 Committee (2003) Fueling educational reform: Bio2010-biology for the future. Cell biology education 2: 85-86 doi:10.1187/cbe.02-11-0053.
-
(2003)
Cell Biology Education
, vol.2
, pp. 85-86
-
-
-
108
-
-
57349135341
-
A molecular genetics laboratory course applying bioinformatics and cell biology in the context of original research
-
doi: 10.1187/cbe.08-07-0036
-
Brame CJ, Pruitt WM, Robinson LC, (2008) A molecular genetics laboratory course applying bioinformatics and cell biology in the context of original research. CBE life sciences education 7: 410-421 doi:10.1187/cbe.08-07-0036.
-
(2008)
CBE Life Sciences Education
, vol.7
, pp. 410-421
-
-
Brame, C.J.1
Pruitt, W.M.2
Robinson, L.C.3
-
109
-
-
79952507933
-
Implementation of a Project-Based Molecular Biology Laboratory Emphasizing Protein Structure-Function Relationships in a Large Introductory Biology Laboratory Course
-
doi: 10.1187/cbe.10-07-0085
-
Treacy DJ, Sankaran SM, Gordon-Messer S, Saly D, Miller R, et al. (2011) Implementation of a Project-Based Molecular Biology Laboratory Emphasizing Protein Structure-Function Relationships in a Large Introductory Biology Laboratory Course. CBE life sciences education 10: 18-24 doi:10.1187/cbe.10-07-0085.
-
(2011)
CBE Life Sciences Education
, vol.10
, pp. 18-24
-
-
Treacy, D.J.1
Sankaran, S.M.2
Gordon-Messer, S.3
Saly, D.4
Miller, R.5
-
110
-
-
71749087275
-
Effectiveness of a cloning and sequencing exercise on student learning with subsequent publication in the National Center for Biotechnology Information GenBank
-
doi: 10.1187/cbe.09-05-0036
-
Lau JM, Robinson DL, (2009) Effectiveness of a cloning and sequencing exercise on student learning with subsequent publication in the National Center for Biotechnology Information GenBank. CBE life sciences education 8: 326-337 doi:10.1187/cbe.09-05-0036.
-
(2009)
CBE Life Sciences Education
, vol.8
, pp. 326-337
-
-
Lau, J.M.1
Robinson, D.L.2
-
111
-
-
7444222895
-
Generation of the Brucella melitensis ORFeome version 1.1
-
doi: 10.1101/gr.2456204
-
Dricot A, Rual J-F, Lamesch P, Bertin N, Dupuy D, et al. (2004) Generation of the Brucella melitensis ORFeome version 1.1. Genome Research 14: 2201-2206 doi:10.1101/gr.2456204.
-
(2004)
Genome Research
, vol.14
, pp. 2201-2206
-
-
Dricot, A.1
Rual, J.-F.2
Lamesch, P.3
Bertin, N.4
Dupuy, D.5
-
112
-
-
33746112995
-
ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe
-
doi: 10.1038/nbt1222
-
Matsuyama A, Arai R, Yashiroda Y, Shirai A, Kamata A, et al. (2006) ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Nat Biotechnol 24: 841-847 doi:10.1038/nbt1222.
-
(2006)
Nat Biotechnol
, vol.24
, pp. 841-847
-
-
Matsuyama, A.1
Arai, R.2
Yashiroda, Y.3
Shirai, A.4
Kamata, A.5
-
113
-
-
26844432237
-
Development of a functional genomics platform for Sinorhizobium meliloti: construction of an ORFeome
-
doi: 10.1128/AEM.71.10.5858-5864.2005
-
Schroeder BK, House BL, Mortimer MW, Yurgel SN, Maloney SC, et al. (2005) Development of a functional genomics platform for Sinorhizobium meliloti: construction of an ORFeome. Appl Environ Microbiol 71: 5858-5864 doi:10.1128/AEM.71.10.5858-5864.2005.
-
(2005)
Appl Environ Microbiol
, vol.71
, pp. 5858-5864
-
-
Schroeder, B.K.1
House, B.L.2
Mortimer, M.W.3
Yurgel, S.N.4
Maloney, S.C.5
-
114
-
-
3042576717
-
Genome-wide ORFeome cloning and analysis of Arabidopsis transcription factor genes
-
doi: 10.1104/pp.104.042176
-
Gong W, Shen Y-P, Ma L-G, Pan Y, Du Y-L, et al. (2004) Genome-wide ORFeome cloning and analysis of Arabidopsis transcription factor genes. Plant Physiol 135: 773-782 doi:10.1104/pp.104.042176.
-
(2004)
Plant Physiol
, vol.135
, pp. 773-782
-
-
Gong, W.1
Shen, Y.-P.2
Ma, L.-G.3
Pan, Y.4
Du, Y.-L.5
-
115
-
-
47749153761
-
The ORFeome of Staphylococcus aureus v 1.1
-
doi: 10.1186/1471-2164-9-321
-
Brandner CJ, Maier RH, Henderson DS, Hintner H, Bauer JW, et al. (2008) The ORFeome of Staphylococcus aureus v 1.1. BMC Genomics 9: 321 doi:10.1186/1471-2164-9-321.
-
(2008)
BMC Genomics
, vol.9
, pp. 321
-
-
Brandner, C.J.1
Maier, R.H.2
Henderson, D.S.3
Hintner, H.4
Bauer, J.W.5
-
116
-
-
77955342525
-
The Escherichia coli K-12 ORFeome: a resource for comparative molecular microbiology
-
doi: 10.1186/1471-2164-11-470
-
Rajagopala SV, Yamamoto N, Zweifel AE, Nakamichi T, Huang H-K, et al. (2010) The Escherichia coli K-12 ORFeome: a resource for comparative molecular microbiology. BMC Genomics 11: 470 doi:10.1186/1471-2164-11-470.
-
(2010)
BMC Genomics
, vol.11
, pp. 470
-
-
Rajagopala, S.V.1
Yamamoto, N.2
Zweifel, A.E.3
Nakamichi, T.4
Huang, H.-K.5
-
117
-
-
79960987021
-
A public genome-scale lentiviral expression library of human ORFs
-
doi: 10.1038/nmeth.1638
-
Yang X, Boehm JS, Yang X, Salehi-Ashtiani K, Hao T, et al. (2011) A public genome-scale lentiviral expression library of human ORFs. Nat Chem Biol 8: 659-661 doi:10.1038/nmeth.1638.
-
(2011)
Nat Chem Biol
, vol.8
, pp. 659-661
-
-
Yang, X.1
Boehm, J.S.2
Yang, X.3
Salehi-Ashtiani, K.4
Hao, T.5
-
118
-
-
84871261217
-
The Wnt Signaling Pathway Effector TCF7L2 Controls Gut and Brain Proglucagon Gene Expression and Glucose Homeostasis
-
doi:10.2337/db12-0365
-
Shao W, Wang D, Chiang Y-T, Ip W, Zhu L, et al. (2012) The Wnt Signaling Pathway Effector TCF7L2 Controls Gut and Brain Proglucagon Gene Expression and Glucose Homeostasis. Diabetes. doi:10.2337/db12-0365.
-
(2012)
Diabetes
-
-
Shao, W.1
Wang, D.2
Chiang, Y.-T.3
Ip, W.4
Zhu, L.5
-
119
-
-
0027321966
-
Raf-1 kinase is essential for early Xenopus development and mediates the induction of mesoderm by FGF
-
MacNicol AM, Muslin AJ, Williams LT, (1993) Raf-1 kinase is essential for early Xenopus development and mediates the induction of mesoderm by FGF. Cell 73: 571-583.
-
(1993)
Cell
, vol.73
, pp. 571-583
-
-
MacNicol, A.M.1
Muslin, A.J.2
Williams, L.T.3
-
120
-
-
0028935672
-
Regulation of Spemann organizer formation by the intracellular kinase Xgsk-3
-
Pierce SB, Kimelman D, (1995) Regulation of Spemann organizer formation by the intracellular kinase Xgsk-3. Development 121: 755-765.
-
(1995)
Development
, vol.121
, pp. 755-765
-
-
Pierce, S.B.1
Kimelman, D.2
-
121
-
-
33750334034
-
Function of the Dictyostelium discoideum Atg1 kinase during autophagy and development
-
doi: 10.1128/EC.00342-05
-
Tekinay T, Wu MY, Otto GP, Anderson OR, Kessin RH, (2006) Function of the Dictyostelium discoideum Atg1 kinase during autophagy and development. Eukaryotic Cell 5: 1797-1806 doi:10.1128/EC.00342-05.
-
(2006)
Eukaryotic Cell
, vol.5
, pp. 1797-1806
-
-
Tekinay, T.1
Wu, M.Y.2
Otto, G.P.3
Anderson, O.R.4
Kessin, R.H.5
-
122
-
-
84867687395
-
Processing and Subcellular Trafficking of ER-Tethered EIN2 Control Response to Ethylene Gas
-
doi:10.1126/science.1225974
-
Qiao H, Shen Z, Huang S-SC, Schmitz RJ, Urich MA, et al. (2012) Processing and Subcellular Trafficking of ER-Tethered EIN2 Control Response to Ethylene Gas. Science. doi:10.1126/science.1225974.
-
(2012)
Science
-
-
Qiao, H.1
Shen, Z.2
Huang, S.-S.C.3
Schmitz, R.J.4
Urich, M.A.5
-
123
-
-
0035031966
-
A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach
-
Whelan S, Goldman N, (2001) A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach. Mol Biol Evol 18: 691-699.
-
(2001)
Mol Biol Evol
, vol.18
, pp. 691-699
-
-
Whelan, S.1
Goldman, N.2
-
124
-
-
0037320536
-
Simulation-based P values: response to North et al
-
doi: 10.1086/346175
-
Broman KW, Caffo BS, (2003) Simulation-based P values: response to North et al. Am J Hum Genet 72: 496 doi:10.1086/346175.
-
(2003)
Am J Hum Genet
, vol.72
, pp. 496
-
-
Broman, K.W.1
Caffo, B.S.2
-
125
-
-
0032911895
-
The primer generator: a program that facilitates the selection of oligonucleotides for site-directed mutagenesis
-
Turchin A, Lawler JF, (1999) The primer generator: a program that facilitates the selection of oligonucleotides for site-directed mutagenesis. BioTechniques 26: 672-676.
-
(1999)
BioTechniques
, vol.26
, pp. 672-676
-
-
Turchin, A.1
Lawler, J.F.2
-
126
-
-
29144444704
-
SiteFind: a software tool for introducing a restriction site as a marker for successful site-directed mutagenesis
-
doi: 10.1186/1471-2199-6-22
-
Evans PM, Liu C, (2005) SiteFind: a software tool for introducing a restriction site as a marker for successful site-directed mutagenesis. BMC Mol Biol 6: 22 doi:10.1186/1471-2199-6-22.
-
(2005)
BMC Mol Biol
, vol.6
, pp. 22
-
-
Evans, P.M.1
Liu, C.2
-
127
-
-
84871335043
-
-
University of Utah, Available, Accessed 6 January
-
Davis WM, editor (n.d.) A Plasmid Editor. University of Utah. pp. Available:http://www.biology.utah.edu/jorgensen/wayned/ape/. Accessed 6 January 2012.
-
(2012)
A Plasmid Editor
-
-
Davis, W.M.1
-
128
-
-
42149157760
-
Broad phylogenomic sampling improves resolution of the animal tree of life
-
doi: 10.1038/nature06614
-
Dunn CW, Hejnol A, Matus DQ, Pang K, Browne WE, et al. (2008) Broad phylogenomic sampling improves resolution of the animal tree of life. Nature 452: 745-749 doi:10.1038/nature06614.
-
(2008)
Nature
, vol.452
, pp. 745-749
-
-
Dunn, C.W.1
Hejnol, A.2
Matus, D.Q.3
Pang, K.4
Browne, W.E.5
-
129
-
-
0032485270
-
A molecular evolutionary framework for the phylum Nematoda
-
doi: 10.1038/32160
-
Blaxter ML, De Ley P, Garey JR, Liu LX, Scheldeman P, et al. (1998) A molecular evolutionary framework for the phylum Nematoda. Nature 392: 71-75 doi:10.1038/32160.
-
(1998)
Nature
, vol.392
, pp. 71-75
-
-
Blaxter, M.L.1
De Ley, P.2
Garey, J.R.3
Liu, L.X.4
Scheldeman, P.5
-
130
-
-
80053442983
-
A detailed history of intron-rich eukaryotic ancestors inferred from a global survey of 100 complete genomes
-
doi: 10.1371/journal.pcbi.1002150
-
Csuros M, Rogozin IB, Koonin EV, (2011) A detailed history of intron-rich eukaryotic ancestors inferred from a global survey of 100 complete genomes. PLoS Comput Biol 7: e1002150 doi:10.1371/journal.pcbi.1002150.
-
(2011)
PLoS Comput Biol
, vol.7
-
-
Csuros, M.1
Rogozin, I.B.2
Koonin, E.V.3
|