-
1
-
-
2942571539
-
The comparative RNA web (CRW) site: An online database of comparative sequence and structure information for ribosomal, intron, and other RNAs
-
Cannone, J. J. et al. The comparative RNA web (CRW) site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs. MBC Bioinformatics 3, 2 (2002).
-
(2002)
MBC Bioinformatics
, vol.3
, pp. 2
-
-
Cannone, J.J.1
-
2
-
-
0035368207
-
The ins and outs of group II introns
-
Bonen, L. & Vogel, J. The ins and outs of group II introns. Trends Genet. 17, 322-331 (2001).
-
(2001)
Trends Genet.
, vol.17
, pp. 322-331
-
-
Bonen, L.1
Vogel, J.2
-
4
-
-
0042671357
-
Pre-mRNA splicing: Awash in a sea of proteins
-
Jurica, M. S. & Moore, M. J. Pre-mRNA splicing: awash in a sea of proteins. Mol. Cell 12, 5-14 (2003).
-
(2003)
Mol. Cell
, vol.12
, pp. 5-14
-
-
Jurica, M.S.1
Moore, M.J.2
-
5
-
-
0022552726
-
The generality of self-splicing RNA: Relationship to nuclear mRNA splicing
-
Cech, T. R. The generality of self-splicing RNA: relationship to nuclear mRNA splicing. Cell 44, 207-210. (1986).
-
(1986)
Cell
, vol.44
, pp. 207-210
-
-
Cech, T.R.1
-
6
-
-
0024365086
-
How were introns inserted into nuclear genes?
-
Rogers, J. H. How were introns inserted into nuclear genes? Trends Genet. 5, 213-216 (1989). Two of the five current models of intron creation are proposed in this speculative piece.
-
(1989)
Trends Genet.
, vol.5
, pp. 213-216
-
-
Rogers, J.H.1
-
7
-
-
0026261876
-
Five easy pieces
-
Sharp, P. A. Five easy pieces. Science 254, 663 (1991).
-
(1991)
Science
, vol.254
, pp. 663
-
-
Sharp, P.A.1
-
8
-
-
0025810123
-
Intron phylogeny: A new hypothesis
-
Cavalier-Smith, T. Intron phylogeny: a new hypothesis. Trends Genet. 7, 145-148 (1991). An important statement of the idea that introns might be descended from type II introns that are transferred from early eukaryotic organelles.
-
(1991)
Trends Genet.
, vol.7
, pp. 145-148
-
-
Cavalier-Smith, T.1
-
9
-
-
0032770725
-
On the possibility of constructive neutral evolution
-
Stoltzfus, A. On the possibility of constructive neutral evolution. J. Mol. Evol. 49, 169-181 (1999).
-
(1999)
J. Mol. Evol.
, vol.49
, pp. 169-181
-
-
Stoltzfus, A.1
-
10
-
-
0037062440
-
Intron presence-absence polymorphism in Drosophila driven by positive Darwinian selection
-
Llopart, A., Comeron, J. M., Brunet, F. G., Lachaise, D. & Long, M. Intron presence-absence polymorphism in Drosophila driven by positive Darwinian selection. Proc. Natl Acad. Sci. USA 99, 8121-8126 (2002). The sole known cases of polymorphic intron absence-presence within a species, notably in a gene with a fascinating evolutionary history.
-
(2002)
Proc. Natl Acad. Sci. USA
, vol.99
, pp. 8121-8126
-
-
Llopart, A.1
Comeron, J.M.2
Brunet, F.G.3
Lachaise, D.4
Long, M.5
-
11
-
-
0031844194
-
Evolutionary relationship of plant catalase genes inferred from intron-exon structures: Isozyme divergence after the separation of monocots and dicots
-
Iwamoto, M., Maekawa, M., Saito, A., Higo, H. & Higo, K. Evolutionary relationship of plant catalase genes inferred from intron-exon structures: isozyme divergence after the separation of monocots and dicots. Theor. Appl. Genet. 97, 9-19 (1998). The first convincing case of intron gain in which the source of the intron, an inserted SINE element, is clear.
-
(1998)
Theor. Appl. Genet.
, vol.97
, pp. 9-19
-
-
Iwamoto, M.1
Maekawa, M.2
Saito, A.3
Higo, H.4
Higo, K.5
-
12
-
-
0033059511
-
p-SINE 1-like intron of the CatA catalase homologs and phylogenetic relationships among AA-genome Oryza and related species
-
Iwamoto, M., Nagashima, H., Nagamine, T., Higo, H. & Higo, K. p-SINE 1-like intron of the CatA catalase homologs and phylogenetic relationships among AA-genome Oryza and related species. Theor. Appl. Genet. 98, 853-861 (1999).
-
(1999)
Theor. Appl. Genet.
, vol.98
, pp. 853-861
-
-
Iwamoto, M.1
Nagashima, H.2
Nagamine, T.3
Higo, H.4
Higo, K.5
-
13
-
-
0031593151
-
A variable intron distribution in globin genes of Chironomus: Evidence for recent intron gain
-
Hankeln, T., Friedl, H., Ebersberger, I., Martin, J. & Schmidt, E. R. A variable intron distribution in globin genes of Chironomus: evidence for recent intron gain. Gene 205, 151-160 (1997).
-
(1997)
Gene
, vol.205
, pp. 151-160
-
-
Hankeln, T.1
Friedl, H.2
Ebersberger, I.3
Martin, J.4
Schmidt, E.R.5
-
15
-
-
0018857680
-
Selfish DNA: The ultimate parasite
-
Orgel, L. E. & Crick, F. H. Selfish DNA: the ultimate parasite. Nature 284, 604-607 (1980).
-
(1980)
Nature
, vol.284
, pp. 604-607
-
-
Orgel, L.E.1
Crick, F.H.2
-
16
-
-
0018894384
-
Selfish genes, the phenotype paradigm and genome evolution
-
Doolittle, W. F. & Sapienza, C. Selfish genes, the phenotype paradigm and genome evolution. Nature 284, 601-603 (1981). Along with reference 15, this article contains early statements of the idea of genome evolution by insertion of selfish elements and differential selection on such elements between species of different complexity.
-
(1981)
Nature
, vol.284
, pp. 601-603
-
-
Doolittle, W.F.1
Sapienza, C.2
-
18
-
-
0014690698
-
Gene regulation for higher cells: A theory
-
Britten, R. J. & Davidson, E. H. Gene regulation for higher cells: a theory. Science 165, 349-357 (1969).
-
(1969)
Science
, vol.165
, pp. 349-357
-
-
Britten, R.J.1
Davidson, E.H.2
-
19
-
-
0015070886
-
Repetitive and non-repetitive DNA sequences and a speculation on the origins of evolutionary novelty
-
Britten, R. J. & Davidson, E. H. Repetitive and non-repetitive DNA sequences and a speculation on the origins of evolutionary novelty. Q. Rev. Biol. 46, 111-138 (1971).
-
(1971)
Q. Rev. Biol.
, vol.46
, pp. 111-138
-
-
Britten, R.J.1
Davidson, E.H.2
-
20
-
-
0037197986
-
Intron evolution as a population-genetic process
-
Lynch, M. Intron evolution as a population-genetic process. Proc. Natl Acad. Sci. USA 99, 6118-6123 (2002).
-
(2002)
Proc. Natl Acad. Sci. USA
, vol.99
, pp. 6118-6123
-
-
Lynch, M.1
-
21
-
-
0345306751
-
The origins of genome complexity
-
Lynch, M. & Conery, J. The origins of genome complexity. Science 302, 1401-1404 (2002).
-
(2002)
Science
, vol.302
, pp. 1401-1404
-
-
Lynch, M.1
Conery, J.2
-
22
-
-
0018263844
-
Why genes in pieces?
-
Gilbert, W. Why genes in pieces? Nature 271, 501 (1978).
-
(1978)
Nature
, vol.271
, pp. 501
-
-
Gilbert, W.1
-
23
-
-
34547642637
-
Genes in pieces - Were they ever together?
-
Doolittle, W. F. Genes in pieces - were they ever together? Nature 272, 581-582 (1978).
-
(1978)
Nature
, vol.272
, pp. 581-582
-
-
Doolittle, W.F.1
-
24
-
-
0001126390
-
Do genes in pieces imply proteins in pieces?
-
Blake, C. C. F. Do genes in pieces imply proteins in pieces? Nature 273, 267 (1978). References 22-24 provide the backbone of the IE theory.
-
(1978)
Nature
, vol.273
, pp. 267
-
-
Blake, C.C.F.1
-
25
-
-
0018857156
-
The evolution of genes - The chicken preproinsulin gene
-
Perler, F. et al. The evolution of genes - the chicken preproinsulin gene. Cell 20, 555-566 (1980).
-
(1980)
Cell
, vol.20
, pp. 555-566
-
-
Perler, F.1
-
26
-
-
0019860994
-
Correlation of DNA exonic regions with protein structural units in haemoglobin
-
Go, M. Correlation of DNA exonic regions with protein structural units in haemoglobin. Nature 291, 90-92 (1981).
-
(1981)
Nature
, vol.291
, pp. 90-92
-
-
Go, M.1
-
27
-
-
0021917844
-
Intron-dependent evolution of chicken glyceraldehyde phosphate dehydrogenase gene
-
Stone, E. M., Rothblum, K. N. & Schwartz, R. J. Intron-dependent evolution of chicken glyceraldehyde phosphate dehydrogenase gene. Nature 313, 498-500 (1985).
-
(1985)
Nature
, vol.313
, pp. 498-500
-
-
Stone, E.M.1
Rothblum, K.N.2
Schwartz, R.J.3
-
28
-
-
0022211360
-
Genetic engineering in the Precambrian: Structure of the chicken triosephosphate isomerase gene
-
Straus, D. & Gilbert, W. Genetic engineering in the Precambrian: structure of the chicken triosephosphate isomerase gene. Mol. Cell Biol. 5, 3497-3506 (1985).
-
(1985)
Mol. Cell Biol.
, vol.5
, pp. 3497-3506
-
-
Straus, D.1
Gilbert, W.2
-
29
-
-
0029586334
-
Intron phase correlations and the evolution of the intron/exon structure of genes
-
Long, M., Rosenberg, C. & Gilbert, W. Intron phase correlations and the evolution of the intron/exon structure of genes. Proc. Natl Acad. Sci. USA 92, 12495-12499 (1995).
-
(1995)
Proc. Natl Acad. Sci. USA
, vol.92
, pp. 12495-12499
-
-
Long, M.1
Rosenberg, C.2
Gilbert, W.3
-
30
-
-
0029906594
-
Introns correlate with module boundaries in ancient proteins
-
De Souza, S. J., Long, M., Schoenbach, L., Roy, S. W. & Gilbert., W. Introns correlate with module boundaries in ancient proteins. Proc. Natl Acad. Sci. USA 93, 14632-14636 (1996).
-
(1996)
Proc. Natl Acad. Sci. USA
, vol.93
, pp. 14632-14636
-
-
De Souza, S.J.1
Long, M.2
Schoenbach, L.3
Roy, S.W.4
Gilbert, W.5
-
31
-
-
0032574738
-
Towards a resolution of the introns early/late debate: Only phase zero introns are correlated with the structure of ancient proteins
-
De Souza, S. J. et al. Towards a resolution of the introns early/late debate: only phase zero introns are correlated with the structure of ancient proteins. Proc. Natl Acad. Sci. USA 95, 5094-5099 (1998). An important early statement of the 'synthetic' or 'mixed' variant of the IE theory.
-
(1998)
Proc. Natl Acad. Sci. USA
, vol.95
, pp. 5094-5099
-
-
De Souza, S.J.1
-
32
-
-
0032862380
-
Centripetal modules and ancient introns
-
Roy, S. W., Nosaka, M., de Souza, S. J. & Gilbert, W. Centripetal modules and ancient introns. Gene 238, 85-91 (1999).
-
(1999)
Gene
, vol.238
, pp. 85-91
-
-
Roy, S.W.1
Nosaka, M.2
De Souza, S.J.3
Gilbert, W.4
-
33
-
-
0035818503
-
Intron distribution difference for 276 ancient and 131 modern genes suggests the existence of ancient introns
-
Fedorov, A. et al. Intron distribution difference for 276 ancient and 131 modern genes suggests the existence of ancient introns. Proc. Natl Acad. Sci. USA 98, 13177-13182 (2001).
-
(2001)
Proc. Natl Acad. Sci. USA
, vol.98
, pp. 13177-13182
-
-
Fedorov, A.1
-
34
-
-
0035451109
-
Footprints of primordial introns on the eukaryotic genome
-
Roy, S. W., Lewis, B. P., Fedorov, A. & Gilbert, W. Footprints of primordial introns on the eukaryotic genome. Trends Genet. 17, 496-498 (2001).
-
(2001)
Trends Genet.
, vol.17
, pp. 496-498
-
-
Roy, S.W.1
Lewis, B.P.2
Fedorov, A.3
Gilbert, W.4
-
35
-
-
0038817793
-
Phylogenetically older introns strongly correlate with module boundaries in ancient proteins
-
Fedorov, A., Roy, S., Cao, X. & Gilbert, W. Phylogenetically older introns strongly correlate with module boundaries in ancient proteins. Genome Res. 13, 1155-1157 (2003).
-
(2003)
Genome Res.
, vol.13
, pp. 1155-1157
-
-
Fedorov, A.1
Roy, S.2
Cao, X.3
Gilbert, W.4
-
36
-
-
0037180494
-
The signal of ancient introns is obscured by intron density and homolog number
-
Roy, S. W., Fedorov, A. & Gilbert, W. The signal of ancient introns is obscured by intron density and homolog number. Proc. Natl Acad. Sci. USA 99, 15513-15517 (2002).
-
(2002)
Proc. Natl Acad. Sci. USA
, vol.99
, pp. 15513-15517
-
-
Roy, S.W.1
Fedorov, A.2
Gilbert, W.3
-
37
-
-
0038306163
-
The emergence of a synthetic theory of intron evolution
-
De Souza, S. J. The emergence of a synthetic theory of intron evolution. Genetica 118, 117-121 (2003).
-
(2003)
Genetica
, vol.118
, pp. 117-121
-
-
De Souza, S.J.1
-
38
-
-
0037629718
-
Recent evidence for the exon theory of genes
-
Roy, S. W. Recent evidence for the exon theory of genes. Genetica 118, 251-266 (2003).
-
(2003)
Genetica
, vol.118
, pp. 251-266
-
-
Roy, S.W.1
-
39
-
-
0032885169
-
Genome evolution and the evolution of exon-shuffling - A review
-
Patthy, L. Genome evolution and the evolution of exon-shuffling - a review. Gene 238, 103-114 (1999). A comprehensive review of the known cases of exon shuffling.
-
(1999)
Gene
, vol.238
, pp. 103-114
-
-
Patthy, L.1
-
40
-
-
0038306145
-
Modular assembly of genes and the evolution of new functions
-
Patthy, L. Modular assembly of genes and the evolution of new functions. Genetica 118, 217-231 (2003).
-
(2003)
Genetica
, vol.118
, pp. 217-231
-
-
Patthy, L.1
-
41
-
-
0007003927
-
Sequence of a mouse germ-line gene for a variable region of an immunoglobulin light chain
-
Tonegawa, S., Maxam, A. M., Tizard, R., Bernard, O. & Gilbert, W. Sequence of a mouse germ-line gene for a variable region of an immunoglobulin light chain. Proc. Natl Acad. Sci. USA 75, 1485-1489 (1978).
-
(1978)
Proc. Natl Acad. Sci. USA
, vol.75
, pp. 1485-1489
-
-
Tonegawa, S.1
Maxam, A.M.2
Tizard, R.3
Bernard, O.4
Gilbert, W.5
-
42
-
-
0033767383
-
The correlation between intron length and recombination in Drosophila. Dynamic equilibrium between mutational and selective forces
-
Comeron, J. M. & Kreitman, M. The correlation between intron length and recombination in Drosophila. Dynamic equilibrium between mutational and selective forces. Genetics 156, 1175-1190 (2000).
-
(2000)
Genetics
, vol.156
, pp. 1175-1190
-
-
Comeron, J.M.1
Kreitman, M.2
-
43
-
-
0035313034
-
Why do genes have introns? Recombination might add a new piece to the puzzle
-
Duret, L. Why do genes have introns? Recombination might add a new piece to the puzzle. Trends Genet. 17, 172-175 (2001).
-
(2001)
Trends Genet.
, vol.17
, pp. 172-175
-
-
Duret, L.1
-
44
-
-
0037387431
-
Messenger RNA surveillance and the evolutionary proliferation of introns
-
Lynch, M. & Kewalramani, A. Messenger RNA surveillance and the evolutionary proliferation of introns. Mol. Biol. Evol. 20, 563-571 (2003).
-
(2003)
Mol. Biol. Evol.
, vol.20
, pp. 563-571
-
-
Lynch, M.1
Kewalramani, A.2
-
45
-
-
0022431014
-
Selfish DNA and the origin of introns
-
Cavalier-Smith, T. Selfish DNA and the origin of introns. Nature 315, 283-284 (1985). An important early statement of the IL hypothesis.
-
(1985)
Nature
, vol.315
, pp. 283-284
-
-
Cavalier-Smith, T.1
-
46
-
-
0022131865
-
On the origin of RNA splicing and introns
-
Sharp, P. A. On the origin of RNA splicing and introns. Cell 42, 397-400 (1985).
-
(1985)
Cell
, vol.42
, pp. 397-400
-
-
Sharp, P.A.1
-
47
-
-
0024462103
-
Evidence that introns arose at proto-splice sites
-
Dibb, N. J. & Newman, A. J. Evidence that introns arose at proto-splice sites. EMBO J. 8, 2015-2021 (1989).
-
(1989)
EMBO J.
, vol.8
, pp. 2015-2021
-
-
Dibb, N.J.1
Newman, A.J.2
-
49
-
-
0028043139
-
Testing the exon theory of genes: The evidence from protein structure
-
Stoltzfus, A., Spencer, D. F., Zuker, M., Logsdon, J. M. Jr & Doolittle, W. F. Testing the exon theory of genes: the evidence from protein structure. Science 265, 202-207 (1994).
-
(1994)
Science
, vol.265
, pp. 202-207
-
-
Stoltzfus, A.1
Spencer, D.F.2
Zuker, M.3
Logsdon Jr., J.M.4
Doolittle, W.F.5
-
50
-
-
0028356113
-
Origin of introns - Early or late?
-
Stoltzfus, A. Origin of introns - early or late? Nature 369, 526-527 (1994).
-
(1994)
Nature
, vol.369
, pp. 526-527
-
-
Stoltzfus, A.1
-
51
-
-
0029115626
-
Seven newly discovered intron positions in the triose-phosphate isomerase gene: Evidence for the introns-late theory
-
Logsdon, J. M. Jr et al. Seven newly discovered intron positions in the triose-phosphate isomerase gene: evidence for the introns-late theory. Proc. Natl Acad. Sci. USA 92, 8507-8511 (1995).
-
(1995)
Proc. Natl Acad. Sci. USA
, vol.92
, pp. 8507-8511
-
-
Logsdon Jr., J.M.1
-
52
-
-
0029090180
-
Evidence against the exon theory of genes derived from the triose-phosphate isomerase gene
-
Kwaitowski, J., Krawczyk, M., Kornacki, M., Bailey, K. & Ayala, F. J. Evidence against the exon theory of genes derived from the triose-phosphate isomerase gene. Proc. Natl Acad. Sci. USA 92, 8503-8506 (1995).
-
(1995)
Proc. Natl Acad. Sci. USA
, vol.92
, pp. 8503-8506
-
-
Kwaitowski, J.1
Krawczyk, M.2
Kornacki, M.3
Bailey, K.4
Ayala, F.J.5
-
53
-
-
0030985059
-
Intron distribution in ancient paralogs supports random insertion and not random loss
-
Cho, G. & Doolittle, R. F. Intron distribution in ancient paralogs supports random insertion and not random loss. J. Mol. Evol. 44, 573-584 (1997).
-
(1997)
J. Mol. Evol.
, vol.44
, pp. 573-584
-
-
Cho, G.1
Doolittle, R.F.2
-
54
-
-
0030989167
-
Exon/intron structure of aldehyde dehydrogenase genes supports the 'introns-late' theory
-
Rzhetsky, A., Ayala, F. J., Hsu, L. C., Chang, C. & Yoshida, A. Exon/intron structure of aldehyde dehydrogenase genes supports the 'introns-late' theory. Proc. Natl Acad. Sci. USA 94, 6820-6825 (1997).
-
(1997)
Proc. Natl Acad. Sci. USA
, vol.94
, pp. 6820-6825
-
-
Rzhetsky, A.1
Ayala, F.J.2
Hsu, L.C.3
Chang, C.4
Yoshida, A.5
-
55
-
-
0031737389
-
The recent origins of spliceosomal introns revisited
-
Logsdon, J. M. Jr. The recent origins of spliceosomal introns revisited. Curr. Opin. Genet. Dev. 8, 637-648 (1998).
-
(1998)
Curr. Opin. Genet. Dev.
, vol.8
, pp. 637-648
-
-
Logsdon Jr., J.M.1
-
56
-
-
13144253092
-
Molecular evolution: Recent cases of spliceosomal intron gain?
-
Logsdon, J. M. Jr, Stoltzfus, A. & Doolittle, W. F. Molecular evolution: recent cases of spliceosomal intron gain? Curr. Biol. 8, R560-R563 (1998).
-
(1998)
Curr. Biol.
, vol.8
-
-
Logsdon Jr., J.M.1
Stoltzfus, A.2
Doolittle, W.F.3
-
57
-
-
0037058978
-
Large-scale comparison of intron positions among animal, plant, and fungal genes
-
Fedoro v, A. F., Merican, A. F. & Gilbert, W. Large-scale comparison of intron positions among animal, plant, and fungal genes. Proc. Natl Acad. Sci. USA 99, 16128-16133 (2002).
-
(2002)
Proc. Natl Acad. Sci. USA
, vol.99
, pp. 16128-16133
-
-
Fedoro V, A.F.1
Merican, A.F.2
Gilbert, W.3
-
58
-
-
0042921194
-
Remarkable interkingdom conservation of intron positions and massive, lineage-specific intron loss and gain in eukaryotic evolution
-
Rogozin, I. B., Wolf, Y. I., Sorokin, A. V., Mirkin, B. G. & Koonin, E. V. Remarkable interkingdom conservation of intron positions and massive, lineage-specific intron loss and gain in eukaryotic evolution. Curr. Biol. 13, 1512-1517 (2003).
-
(2003)
Curr. Biol.
, vol.13
, pp. 1512-1517
-
-
Rogozin, I.B.1
Wolf, Y.I.2
Sorokin, A.V.3
Mirkin, B.G.4
Koonin, E.V.5
-
59
-
-
0037975529
-
A new Drosophila spliceosomal intron position is common in plants
-
Tarrio, R., Rodriguez-Trelles, F. & Ayala, F. J. A new Drosophila spliceosomal intron position is common in plants. Proc. Natl Acad. Sci. USA 100, 6580-6583 (2003).
-
(2003)
Proc. Natl Acad. Sci. USA
, vol.100
, pp. 6580-6583
-
-
Tarrio, R.1
Rodriguez-Trelles, F.2
Ayala, F.J.3
-
60
-
-
0025812574
-
Proto-splice site model of intron origin
-
Dibb, N. J. Proto-splice site model of intron origin. J. Theor. Biol. 151, 405-416 (1991).
-
(1991)
J. Theor. Biol.
, vol.151
, pp. 405-416
-
-
Dibb, N.J.1
-
61
-
-
0033866508
-
Intron-exon organization and phylogeny in a large superfamily, the paralogous cytochrome P450 genes of Arabidopsis thaliana
-
Paquette, S. M., Bak, S & Feyereisen, R. Intron-exon organization and phylogeny in a large superfamily, the paralogous cytochrome P450 genes of Arabidopsis thaliana. DNA Cell Biol. 19, 307-317 (2000).
-
(2000)
DNA Cell Biol.
, vol.19
, pp. 307-317
-
-
Paquette, S.M.1
Bak, S.2
Feyereisen, R.3
-
62
-
-
4344639564
-
Reconstruction of ancestral protosplice sites
-
Sverdlov, A. V., Rogozin, I. B., Babenko, V. N. & Koonin, E. V. Reconstruction of ancestral protosplice sites. Curr. Biol. 14, 1505-1508 (2004).
-
(2004)
Curr. Biol.
, vol.14
, pp. 1505-1508
-
-
Sverdlov, A.V.1
Rogozin, I.B.2
Babenko, V.N.3
Koonin, E.V.4
-
63
-
-
3843113189
-
Origins of recently gained introns in Caenorhabditis
-
Coghlan, A. & Wolfe, K. H. Origins of recently gained introns in Caenorhabditis. Proc. Natl Acad. Sci. USA 101, 11362-11367 (2004). The first sequence analysis of a large number of putative recently gained introns. The results are interpreted by the authors as evidence for intron transposition, although the answer might not be so straightforward.
-
(2004)
Proc. Natl Acad. Sci. USA
, vol.101
, pp. 11362-11367
-
-
Coghlan, A.1
Wolfe, K.H.2
-
64
-
-
3042548834
-
The evolutionary gain of spliceosomal introns: Sequence and phase preferences
-
Qiu, W. C., Schisler, N. & Stoltzfus, A. The evolutionary gain of spliceosomal introns: sequence and phase preferences. Mol. Biol. Evol. 21, 1252-1263 (2004).
-
(2004)
Mol. Biol. Evol.
, vol.21
, pp. 1252-1263
-
-
Qiu, W.C.1
Schisler, N.2
Stoltzfus, A.3
-
65
-
-
4544244620
-
Insertion of spliceosomal introns in proto-splice sites: The case of secretory signal peptides
-
Tordai, H. & Patthy, L. Insertion of spliceosomal introns in proto-splice sites: the case of secretory signal peptides. FEBS Lett. 575, 109-111 (2004).
-
(2004)
FEBS Lett.
, vol.575
, pp. 109-111
-
-
Tordai, H.1
Patthy, L.2
-
66
-
-
1842535132
-
Exon junction sequences as cryptic splice sites: Implications for intron origin
-
Sadusky, T., Newman, A. J. & Dibb, N. J. Exon junction sequences as cryptic splice sites: implications for intron origin. Curr. Biol. 14, 505-509 (2004).
-
(2004)
Curr. Biol.
, vol.14
, pp. 505-509
-
-
Sadusky, T.1
Newman, A.J.2
Dibb, N.J.3
-
67
-
-
2342473948
-
Molecular evolution: Introns fall into place
-
Stoltzfus, A. Molecular evolution: introns fall into place. Curr. Biol. 14, R351-352 (2004).
-
(2004)
Curr. Biol.
, vol.14
-
-
Stoltzfus, A.1
-
68
-
-
15944384932
-
Conservation versus parallel gains in intron evolution
-
Sverdlov, A. V., Rogozin, I. B., Babenko, V. N. & Koonin, E. V. Conservation versus parallel gains in intron evolution. Nucleic Acids Res. 33, 1741-1748 (2005).
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. 1741-1748
-
-
Sverdlov, A.V.1
Rogozin, I.B.2
Babenko, V.N.3
Koonin, E.V.4
-
69
-
-
13844309569
-
Complex early genes
-
Roy, S. W. & Gilbert, W. Complex early genes. Proc. Natl Acad. Sci. USA 102, 1986-1991 (2005). The reanalysis of data from reference 58, which indicates that intron loss, not gain, has dominated intron evolution.
-
(2005)
Proc. Natl Acad. Sci. USA
, vol.102
, pp. 1986-1991
-
-
Roy, S.W.1
Gilbert, W.2
-
70
-
-
21044447550
-
Analysis of evolution of exon-intron structure in eukaryotic genes
-
Rogozin, I. B., Sverdlov, A. V., Babenko, V. N. & Koovin, E. V. Analysis of evolution of exon-intron structure in eukaryotic genes. Brief Bioinform. 6, 118-134.
-
Brief Bioinform.
, vol.6
, pp. 118-134
-
-
Rogozin, I.B.1
Sverdlov, A.V.2
Babenko, V.N.3
Koovin, E.V.4
-
71
-
-
0037795455
-
Large-scale comparison of intron positions in mammalian genes shows intron loss but no gain
-
Roy, S. W., Fedorov, A. & Gilbert, W. Large-scale comparison of intron positions in mammalian genes shows intron loss but no gain. Proc. Natl Acad. Sci. USA 100, 7158-7162 (2003).
-
(2003)
Proc. Natl Acad. Sci. USA
, vol.100
, pp. 7158-7162
-
-
Roy, S.W.1
Fedorov, A.2
Gilbert, W.3
-
72
-
-
3543107924
-
A phylogeny of Caenorhabditis reveals frequent loss of introns during nematode evolution
-
Cho, S., Jin, S. W., Cohen, A. & Ellis, R. E. A phylogeny of Caenorhabditis reveals frequent loss of introns during nematode evolution. Genome Res. 14, 1207-1220 (2004).
-
(2004)
Genome Res.
, vol.14
, pp. 1207-1220
-
-
Cho, S.1
Jin, S.W.2
Cohen, A.3
Ellis, R.E.4
-
73
-
-
2942669900
-
Caenorhabditis phylogeny predicts convergence of hermaphroditism and extensive intron loss
-
Kiontke, K. et al. Caenorhabditis phylogeny predicts convergence of hermaphroditism and extensive intron loss. Proc. Natl Acad. Sci. USA 101, 9003-9008 (2004).
-
(2004)
Proc. Natl Acad. Sci. USA
, vol.101
, pp. 9003-9008
-
-
Kiontke, K.1
-
74
-
-
0031804088
-
Two large families of chemoreceptor genes in the nematodes Caenorhabditis elegans and Caenorhabditis briggsae reveal extensive gene duplication, diversification, movement, and intron loss
-
Robertson, H. M. Two large families of chemoreceptor genes in the nematodes Caenorhabditis elegans and Caenorhabditis briggsae reveal extensive gene duplication, diversification, movement, and intron loss. Genome Res. 8, 449-463 (1998).
-
(1998)
Genome Res.
, vol.8
, pp. 449-463
-
-
Robertson, H.M.1
-
75
-
-
0035460444
-
Footprints of primordial introns on the eukaryotic genome: Still no clear traces
-
Wolf, Y. I., Kondrashov, F. A. & Koonin, E. V. Footprints of primordial introns on the eukaryotic genome: still no clear traces. Trends Genet. 17, 499-501 (2001).
-
(2001)
Trends Genet.
, vol.17
, pp. 499-501
-
-
Wolf, Y.I.1
Kondrashov, F.A.2
Koonin, E.V.3
-
76
-
-
0035930701
-
Miniature genome in the marine chordate Oikopleura dioica
-
Seo, H. C. et al. Miniature genome in the marine chordate Oikopleura dioica. Science 294, 2506 (2001).
-
(2001)
Science
, vol.294
, pp. 2506
-
-
Seo, H.C.1
-
77
-
-
4644260480
-
Hypervariable and highly divergent intron-exon organizations in the chordate Oikopleura dioica
-
Edvardsen, R. B. et al. Hypervariable and highly divergent intron-exon organizations in the chordate Oikopleura dioica. J. Mol. Evol. 59, 448-457 (2004).
-
(2004)
J. Mol. Evol.
, vol.59
, pp. 448-457
-
-
Edvardsen, R.B.1
-
78
-
-
3142749596
-
Prevalence of intron gain over intron loss in the evolution of paralogous gene families
-
Babenko, V. N., Rogozin, I. B., Mekhedov, S. L. & Koonin, E. V. Prevalence of intron gain over intron loss in the evolution of paralogous gene families. Nucleic Acids Res. 32, 3724-3733 (2004).
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 3724-3733
-
-
Babenko, V.N.1
Rogozin, I.B.2
Mekhedov, S.L.3
Koonin, E.V.4
-
80
-
-
0037108318
-
Eukaryotic evolution: Getting to the root of the problem
-
Simpson, A. G. & Roger, A. J. Eukaryotic evolution: getting to the root of the problem. Curr. Biol. 12, R691-R693 (2002).
-
(2002)
Curr. Biol.
, vol.12
-
-
Simpson, A.G.1
Roger, A.J.2
-
81
-
-
0026282909
-
Early evolution and the origin of eukaryotes
-
Sogin, M. L. Early evolution and the origin of eukaryotes. Curr. Opin. Genet. Dev. 1, 457-463 (1991).
-
(1991)
Curr. Opin. Genet. Dev.
, vol.1
, pp. 457-463
-
-
Sogin, M.L.1
-
82
-
-
0029976676
-
Origin and early evolution of eukaryotes inferred from the amino acid sequences of translation elongation factors 1α/Tu and 2/G
-
Hashimoto, T. & Hasegawa, M. Origin and early evolution of eukaryotes inferred from the amino acid sequences of translation elongation factors 1α/Tu and 2/G. Adv. Biophys. 32, 73-120 (1996).
-
(1996)
Adv. Biophys.
, vol.32
, pp. 73-120
-
-
Hashimoto, T.1
Hasegawa, M.2
-
83
-
-
0032578482
-
Amitochondriate amoebae and the evolution of DNA-dependent RNA polymerase II
-
Stiller, J. W., Duffield, E. C. & Hall, B. D. Amitochondriate amoebae and the evolution of DNA-dependent RNA polymerase II. Proc. Natl Acad. Sci. USA 95, 11769-11774 (1998).
-
(1998)
Proc. Natl Acad. Sci. USA
, vol.95
, pp. 11769-11774
-
-
Stiller, J.W.1
Duffield, E.C.2
Hall, B.D.3
-
84
-
-
0032145203
-
A small spliceosomal-type intron occurs in a ribosomal protein gene of the microsporidian Encephalitozoon cuniculi
-
Biderre, C., Metenier, G. & Vivares, C. P. A small spliceosomal-type intron occurs in a ribosomal protein gene of the microsporidian Encephalitozoon cuniculi. Mol. Biochem. Parasitol. 94, 283-286 (1998).
-
(1998)
Mol. Biochem. Parasitol.
, vol.94
, pp. 283-286
-
-
Biderre, C.1
Metenier, G.2
Vivares, C.P.3
-
85
-
-
0032126531
-
U2 and U6 snRNA genes in the microsporidian Nosema locustae: Evidence for a functional spliceosome
-
Fast, N. M., Roger, A. J., Richardson, C. A. & Doolittle, W. F. U2 and U6 snRNA genes in the microsporidian Nosema locustae: evidence for a functional spliceosome. Nucleic Acids Res. 26, 3202-3207 (1998).
-
(1998)
Nucleic Acids Res.
, vol.26
, pp. 3202-3207
-
-
Fast, N.M.1
Roger, A.J.2
Richardson, C.A.3
Doolittle, W.F.4
-
86
-
-
0032908622
-
Trichomonas vaginalis possesses a gene encoding the essential spliceosomal component, PRP8
-
Fast, N. M. & Doolittle, W. F. Trichomonas vaginalis possesses a gene encoding the essential spliceosomal component, PRP8. Mol. Biochem. Parasitol. 99, 275-278 (1999).
-
(1999)
Mol. Biochem. Parasitol.
, vol.99
, pp. 275-278
-
-
Fast, N.M.1
Doolittle, W.F.2
-
87
-
-
0033514437
-
U1 small nuclear RNA and spliceosomal introns in Euglena gracilis
-
Breckenridge, D. G, Watanabe, Y., Greenwood, S. J., Gray, M. W. & Schnare, M. N. U1 small nuclear RNA and spliceosomal introns in Euglena gracilis. Proc. Natl Acad. Sci. USA 96, 852-856 (1999).
-
(1999)
Proc. Natl Acad. Sci. USA
, vol.96
, pp. 852-856
-
-
Breckenridge, D.G.1
Watanabe, Y.2
Greenwood, S.J.3
Gray, M.W.4
Schnare, M.N.5
-
88
-
-
0032800842
-
Characterization of a SR protein from Trypanosoma brucei with homology to RNA-binding cis-splicing proteins
-
Ismaili, N. et al. Characterization of a SR protein from Trypanosoma brucei with homology to RNA-binding cis-splicing proteins. Mol. Biochem. Parasitol. 102, 103-105 (1999).
-
(1999)
Mol. Biochem. Parasitol.
, vol.102
, pp. 103-105
-
-
Ismaili, N.1
-
89
-
-
0033974802
-
Structural conservation and variation among U5 small nuclear RNAs from trypanosomatid protozoa
-
Schnare, M. N. & Gray, M. W. Structural conservation and variation among U5 small nuclear RNAs from trypanosomatid protozoa. Biochim. Biophys. Acta. 1490, 362-366 (2000).
-
(2000)
Biochim. Biophys. Acta.
, vol.1490
, pp. 362-366
-
-
Schnare, M.N.1
Gray, M.W.2
-
90
-
-
0035900653
-
Reconstructing/ deconstructing the earliest eukaryotes: How comparative genomics can help
-
Dacks, J. B. & Doolittle, W. F. Reconstructing/ deconstructing the earliest eukaryotes: how comparative genomics can help. Cell 107, 419-425 (2001).
-
(2001)
Cell
, vol.107
, pp. 419-425
-
-
Dacks, J.B.1
Doolittle, W.F.2
-
91
-
-
0035063264
-
Evolutionary relationships among 'jakobid' flagellates as indicated by α- And β-tubulin phylogenies
-
Edgcomb, V. P., Roger, A. J., Simpson, A. G., Kysela, D. T. & Sogin, M. L. Evolutionary relationships among 'jakobid' flagellates as indicated by α- and β-tubulin phylogenies. Mol. Biol. Evol. 18, 514-522 (2001).
-
(2001)
Mol. Biol. E
, vol.18
, pp. 514-522
-
-
Edgcomb, V.P.1
Roger, A.J.2
Simpson, A.G.3
Kysela, D.T.4
Sogin, M.L.5
-
92
-
-
0036213311
-
The chaperonin genes of jakobid and jakobid-like flagellates: Implications for eukaryotic evolution
-
Archibald, J. M., O'Kelly, C. J. & Doolittle, W. F. The chaperonin genes of jakobid and jakobid-like flagellates: implications for eukaryotic evolution. Mol. Biol. Evol. 19, 422-431 (2002).
-
(2002)
Mol. Biol. Evol.
, vol.19
, pp. 422-431
-
-
Archibald, J.M.1
O'Kelly, C.J.2
Doolittle, W.F.3
-
93
-
-
0037133618
-
A spliceosomal intron in Giardia lamblia
-
Nixon, J. E. et al. A spliceosomal intron in Giardia lamblia. Proc. Natl Acad. Sci. USA 99, 3701-3705 (2002).
-
(2002)
Proc. Natl Acad. Sci. USA
, vol.99
, pp. 3701-3705
-
-
Nixon, J.E.1
-
94
-
-
0037136554
-
Eukaryotic evolution: Early origin of canonical introns
-
Simpson, A. G., MacQuarrie, E. K & Roger, A. J. Eukaryotic evolution: early origin of canonical introns. Nature 419, 270 (2002).
-
(2002)
Nature
, vol.419
, pp. 270
-
-
Simpson, A.G.1
MacQuarrie, E.K.2
Roger, A.J.3
-
95
-
-
16344385067
-
Complex spliceosomal organization ancestral to extant eukaryotes
-
Collins, L. & Penny, D. Complex spliceosomal organization ancestral to extant eukaryotes. Mol. Biol. Evol. 22, 1053-1066 (2005). A demonstration of the presence of a sophisticated spliceosome in the common ancestor of all extant eukaryotes.
-
(2005)
Mol. Biol. Evol.
, vol.22
, pp. 1053-1066
-
-
Collins, L.1
Penny, D.2
-
96
-
-
15444370758
-
Spliceosomal introns in the deep-branching eukaryote Trichomonas vaginalis
-
Vanacova, S., Yan, W., Carlton, J. M. & Johnson, P. J. Spliceosomal introns in the deep-branching eukaryote Trichomonas vaginalis. Proc. Natl Acad. Sci. USA 102, 4430-4435 (2005).
-
(2005)
Proc. Natl Acad. Sci. USA
, vol.102
, pp. 4430-4435
-
-
Vanacova, S.1
Yan, W.2
Carlton, J.M.3
Johnson, P.J.4
-
97
-
-
0036529621
-
Comparative genomics and evolution of proteins involved in RNA metabolism
-
Anantharaman, V., Koonin, E. V. & Aravind, L. Comparative genomics and evolution of proteins involved in RNA metabolism. Nucleic Acids. Res. 30, 1427-1464 (2002).
-
(2002)
Nucleic Acids. Res.
, vol.30
, pp. 1427-1464
-
-
Anantharaman, V.1
Koonin, E.V.2
Aravind, L.3
-
98
-
-
14644402410
-
Can codon usage bias explain intron phase distributions and exon symmetry?
-
Ruvinsky, A., Eskesen, S. T., Eskesen, F. N. & Hurst, L. D. Can codon usage bias explain intron phase distributions and exon symmetry? J. Mol. Evol. 60, 99-104 (2005).
-
(2005)
J. Mol. Evol.
, vol.60
, pp. 99-104
-
-
Ruvinsky, A.1
Eskesen, S.T.2
Eskesen, F.N.3
Hurst, L.D.4
-
99
-
-
0031915298
-
Relationship between 'proto-splice sites' and intron phases: Evidence from dicodon analysis
-
Long, M., de Souza, S. J., Rosenberg, C. & Gilbert, W. Relationship between 'proto-splice sites' and intron phases: evidence from dicodon analysis. Proc. Natl Acad. Sci. USA 95, 219-223 (1998).
-
(1998)
Proc. Natl Acad. Sci. USA
, vol.95
, pp. 219-223
-
-
Long, M.1
De Souza, S.J.2
Rosenberg, C.3
Gilbert, W.4
-
100
-
-
0033637638
-
Testing the 'proto-splice sites' model of intron origin: Evidence from analysis of intron phase correlations
-
Long, M. & Rosenberg, C. Testing the 'proto-splice sites' model of intron origin: evidence from analysis of intron phase correlations. Mol. Biol. Evol. 17, 1789-1796 (2000).
-
(2000)
Mol. Biol. Evol.
, vol.17
, pp. 1789-1796
-
-
Long, M.1
Rosenberg, C.2
-
101
-
-
0020710981
-
Pseudogenes for human small nuclear RNA U3 appear to arise by integration of self-primed reverse transcripts of the RNA into new chromosomal sites
-
Bernstein, L. B., Mount, S. M. & Weiner, A. M. Pseudogenes for human small nuclear RNA U3 appear to arise by integration of self-primed reverse transcripts of the RNA into new chromosomal sites. Cell 32, 461-472 (1983).
-
(1983)
Cell
, vol.32
, pp. 461-472
-
-
Bernstein, L.B.1
Mount, S.M.2
Weiner, A.M.3
-
102
-
-
0020701499
-
How mammalian RNA returns to its genome
-
Lewin, R. How mammalian RNA returns to its genome. Science 219, 1052-1054 (1983).
-
(1983)
Science
, vol.219
, pp. 1052-1054
-
-
Lewin, R.1
-
103
-
-
0022555861
-
Nonviral retroposons: Genes, pseudogenes, and transposable elements generated by the reverse flow of genetic information
-
Weiner, A. M., Deininger, P. L. & Efstratiadis, A. Nonviral retroposons: genes, pseudogenes, and transposable elements generated by the reverse flow of genetic information. Annu. Rev. Biochem. 55, 631-661 (1986).
-
(1986)
Annu. Rev. Biochem.
, vol.55
, pp. 631-661
-
-
Weiner, A.M.1
Deininger, P.L.2
Efstratiadis, A.3
-
104
-
-
0023649687
-
Pseudogenes in yeast?
-
Fink, G. R. Pseudogenes in yeast? Cell 49, 5-6 (1987).
-
(1987)
Cell
, vol.49
, pp. 5-6
-
-
Fink, G.R.1
-
105
-
-
0027905006
-
Natural selection and the origin of jingwei, a chimeric processed functional gene in Drosophila
-
Long, M. & Langley, C. H. Natural selection and the origin of jingwei, a chimeric processed functional gene in Drosophila. Science 260, 91-95 (1993).
-
(1993)
Science
, vol.260
, pp. 91-95
-
-
Long, M.1
Langley, C.H.2
-
106
-
-
0031968001
-
The involvement of cellular recombination and repair genes in RNA-mediated recombination in Saccharomyces cerevisiae
-
Derr, L. K. The involvement of cellular recombination and repair genes in RNA-mediated recombination in Saccharomyces cerevisiae. Genetics 148, 937-945 (1998).
-
(1998)
Genetics
, vol.148
, pp. 937-945
-
-
Derr, L.K.1
-
107
-
-
0033832676
-
Conservation, regulation, synteny, and introns in a large-scale C. briggsae-C. elegans genomic alignment
-
Kent, W. J. & Zahler, A. M. Conservation, regulation, synteny, and introns in a large-scale C. briggsae-C. elegans genomic alignment. Genome Res. 10, 1115-1125 (2000).
-
(2000)
Genome Res.
, vol.10
, pp. 1115-1125
-
-
Kent, W.J.1
Zahler, A.M.2
-
108
-
-
0037630627
-
Introns in gene evolution
-
Fedorova, L. & Fedorov, A. Introns in gene evolution. Genetica 118, 123-131 (2003).
-
(2003)
Genetica
, vol.118
, pp. 123-131
-
-
Fedorova, L.1
Fedorov, A.2
-
109
-
-
14044252770
-
Patterns of intron gain and loss in fungi
-
Nielsen, C. B., Friedman, B., Birren, B., Burge, C. B. & Galagan, J. E. Patterns of intron gain and loss in fungi. PLoS Biol. 2, e422 (2004).
-
(2004)
PLoS Biol.
, vol.2
-
-
Nielsen, C.B.1
Friedman, B.2
Birren, B.3
Burge, C.B.4
Galagan, J.E.5
-
110
-
-
2342548646
-
Evidence that human genes of modular proteins have retained significantly more ancestral introns than their fly or worm orthologues
-
Banyai, L. & Patthy, L. Evidence that human genes of modular proteins have retained significantly more ancestral introns than their fly or worm orthologues. FEBS Lett. 565, 127-132 (2004).
-
(2004)
FEBS Lett.
, vol.565
, pp. 127-132
-
-
Banyai, L.1
Patthy, L.2
-
111
-
-
0037202361
-
On biased distribution of introns in various eukaryotes
-
Sakurai, A. et al. On biased distribution of introns in various eukaryotes. Gene 300, 89-95 (2002).
-
(2002)
Gene
, vol.300
, pp. 89-95
-
-
Sakurai, A.1
-
112
-
-
0038780670
-
Eukaryotic intron loss
-
Mourier, T. & Jeffares, D. C. Eukaryotic intron loss. Science 300, 1393 (2003).
-
(2003)
Science
, vol.300
, pp. 1393
-
-
Mourier, T.1
Jeffares, D.C.2
-
113
-
-
0031835125
-
Intron loss and gain during evolution of the catalase gene family in angiosperms
-
Frugoli, J. A., McPeek, M. A., Thomas, T. L. & McClung, C. R. Intron loss and gain during evolution of the catalase gene family in angiosperms. Genetics 149, 355-365 (1998).
-
(1998)
Genetics
, vol.149
, pp. 355-365
-
-
Frugoli, J.A.1
McPeek, M.A.2
Thomas, T.L.3
McClung, C.R.4
-
114
-
-
0036132976
-
Dynamic insertion-deletion of introns in deuterostome EF-1α genes
-
Wada, H. et al. Dynamic insertion-deletion of introns in deuterostome EF-1α genes. J. Mol. Evol. 54, 118-128 (2002).
-
(2002)
J. Mol. Evol.
, vol.54
, pp. 118-128
-
-
Wada, H.1
-
115
-
-
4143150876
-
Preferential loss and gain of introns in 3′ portions of genes suggests a reverse-transcription mechanism of intron loss
-
Sverdlov, A. V., Babenko, V. N., Rogozin, I. B. & Koonin, E. V. Preferential loss and gain of introns in 3′ portions of genes suggests a reverse-transcription mechanism of intron loss. Gene 338, 85-91 (2004).
-
(2004)
Gene
, vol.338
, pp. 85-91
-
-
Sverdlov, A.V.1
Babenko, V.N.2
Rogozin, I.B.3
Koonin, E.V.4
-
117
-
-
0017890259
-
Chromosome structure and function - Future prospects
-
Crick, F. H. Chromosome structure and function - future prospects. Eur. J. Biochem. 83, 1-3 (1978).
-
(1978)
Eur. J. Biochem.
, vol.83
, pp. 1-3
-
-
Crick, F.H.1
-
118
-
-
0018758145
-
Split genes and RNA splicing
-
Crick, F. Split genes and RNA splicing. Science 204, 264-271 (1979).
-
(1979)
Science
, vol.204
, pp. 264-271
-
-
Crick, F.1
-
119
-
-
0018666397
-
The DNA sequence of Bombyx-mori fibroin gene including the 5′ flanking, mRNA coding, entire intervening and fibroin protein coding regions
-
Tsujimoto, Y. & Suzuki, Y. The DNA sequence of Bombyx-mori fibroin gene including the 5′ flanking, mRNA coding, entire intervening and fibroin protein coding regions. Cell 18, 591-600 (1979).
-
(1979)
Cell
, vol.18
, pp. 591-600
-
-
Tsujimoto, Y.1
Suzuki, Y.2
-
120
-
-
0028172882
-
De novo synthesis of an intron by the maize transposable element Dissociation
-
Giroux, M. J. et al. De novo synthesis of an intron by the maize transposable element Dissociation. Proc. Natl Acad. Sci. USA 91, 12150-12154 (1994). The authors show that a transposable element inserted into the Sh2 gene of maize is sometimes exactly spliced out of transcripts, supporting the idea that transposable element insertions could give rise to new introns in some cases.
-
(1994)
Proc. Natl Acad. Sci. USA
, vol.91
, pp. 12150-12154
-
-
Giroux, M.J.1
-
121
-
-
0025301771
-
The role of introns in evolution
-
Rogers, J. H. The role of introns in evolution. FEBS Lett. 268, 339-343 (1990).
-
(1990)
FEBS Lett.
, vol.268
, pp. 339-343
-
-
Rogers, J.H.1
-
122
-
-
19944429392
-
The origin of recent introns: Transposons?
-
Roy, S. W. The origin of recent introns: transposons? Genome Biol. 5, 251 (2004).
-
(2004)
Genome Biol.
, vol.5
, pp. 251
-
-
Roy, S.W.1
-
123
-
-
17644379051
-
Rates of intron loss and gain: Implications for early eukaryotic evolution
-
Roy, S. W. & Gilbert, W. Rates of intron loss and gain: implications for early eukaryotic evolution. Proc. Natl Acad. Sci. USA 102, 5773-5778 (2005).
-
(2005)
Proc. Natl Acad. Sci. USA
, vol.102
, pp. 5773-5778
-
-
Roy, S.W.1
Gilbert, W.2
-
124
-
-
18344415274
-
Conservation of long-range synteny and microsynteny between the genomes of two distantly related nematodes
-
research0057
-
Guiliano, D. B. et al. Conservation of long-range synteny and microsynteny between the genomes of two distantly related nematodes. Genome Biol. 3, research0057 (2002).
-
(2002)
Genome Biol.
, vol.3
-
-
Guiliano, D.B.1
-
125
-
-
8844244033
-
Very low gene duplication rate in the yeast genome
-
Gao, L. Z. & Innan, H. Very low gene duplication rate in the yeast genome. Science 306, 1367-1370 (2004).
-
(2004)
Science
, vol.306
, pp. 1367-1370
-
-
Gao, L.Z.1
Innan, H.2
-
126
-
-
0036187559
-
Frequent intron loss in the white gene: A cautionary tale for phylogeneticists
-
Krzywinski, J. & Besansky, N. J. Frequent intron loss in the white gene: a cautionary tale for phylogeneticists. Mol. Biol. Evol. 19, 362-366 (2002).
-
(2002)
Mol. Biol. Evol.
, vol.19
, pp. 362-366
-
-
Krzywinski, J.1
Besansky, N.J.2
-
127
-
-
0033525169
-
A perfect message: RNA surveillance and nonsense-mediated decay
-
Hentze, M. W. & Kulozik, A. E. A perfect message: RNA surveillance and nonsense-mediated decay. Cell 96, 307-310 (1999).
-
(1999)
Cell
, vol.96
, pp. 307-310
-
-
Hentze, M.W.1
Kulozik, A.E.2
-
128
-
-
5044222204
-
How did alternative splicing evolve?
-
Ast, G. How did alternative splicing evolve? Nature Rev. Genet. 5, 773-782 (2004).
-
(2004)
Nature Rev. Genet.
, vol.5
, pp. 773-782
-
-
Ast, G.1
-
129
-
-
0036699596
-
Selection for short introns in highly expressed genes
-
Castillo-Davis, C. I., Mekhedov, S. L., Hartl, D. L., Koonin, E. V. & Kondrashov, F. A. Selection for short introns in highly expressed genes. Nature Genet. 31, 415-418 (2002).
-
(2002)
Nature Genet.
, vol.31
, pp. 415-418
-
-
Castillo-Davis, C.I.1
Mekhedov, S.L.2
Hartl, D.L.3
Koonin, E.V.4
Kondrashov, F.A.5
-
130
-
-
17444402039
-
Insertion/ deletion and nucleotide polymorphism data reveal constraints in Drosophila melanogaster introns and intergenic regions
-
Ometto, L., Stephan, W. & De Lorenzo, D. Insertion/ deletion and nucleotide polymorphism data reveal constraints in Drosophila melanogaster introns and intergenic regions. Genetics 169, 1521-1527 (2005).
-
(2005)
Genetics
, vol.169
, pp. 1521-1527
-
-
Ometto, L.1
Stephan, W.2
De Lorenzo, D.3
-
131
-
-
1942485873
-
Intron size correlates positively with recombination rate in Caenorhabditis elegans
-
Prachumwat, A., DeVincentis, L. & Palopoli, M. F. Intron size correlates positively with recombination rate in Caenorhabditis elegans. Genetics 166, 1585-1590 (2004).
-
(2004)
Genetics
, vol.166
, pp. 1585-1590
-
-
Prachumwat, A.1
DeVincentis, L.2
Palopoli, M.F.3
|