-
1
-
-
0021779934
-
Measurement of in situ activities of nonphotosynthetic microorganisms in aquatic and terrestrial habitats
-
Staley J.T., Konopka A. Measurement of in situ activities of nonphotosynthetic microorganisms in aquatic and terrestrial habitats. Annu Rev Microbiol 1985, 39:321-346.
-
(1985)
Annu Rev Microbiol
, vol.39
, pp. 321-346
-
-
Staley, J.T.1
Konopka, A.2
-
2
-
-
0025860931
-
Analysis of a marine picoplankton community by 16S rRNA gene cloning and sequencing
-
Schmidt T.M., DeLong E.F., Pace N.R. Analysis of a marine picoplankton community by 16S rRNA gene cloning and sequencing. J Bacteriol 1991, 173:4371-4378.
-
(1991)
J Bacteriol
, vol.173
, pp. 4371-4378
-
-
Schmidt, T.M.1
DeLong, E.F.2
Pace, N.R.3
-
3
-
-
0031927992
-
Screening of a fosmid library of marine environmental genomic DNA fragments reveals four clones related to members of the order Planctomycetales
-
Vergin K.L., Urbach E., Stein J.L., DeLong E.F., Lanoil B.D., Giovannoni S.J. Screening of a fosmid library of marine environmental genomic DNA fragments reveals four clones related to members of the order Planctomycetales. Appl Environ Microbiol 1998, 64:3075-3078.
-
(1998)
Appl Environ Microbiol
, vol.64
, pp. 3075-3078
-
-
Vergin, K.L.1
Urbach, E.2
Stein, J.L.3
DeLong, E.F.4
Lanoil, B.D.5
Giovannoni, S.J.6
-
4
-
-
0030023659
-
Characterization of uncultivated prokaryotes: isolation and analysis of a 40-kilobase-pair genome fragment from a planktonic marine archaeon
-
Stein J.L., Marsh T.L., Wu K.Y., Shizuya H., DeLong E.F. Characterization of uncultivated prokaryotes: isolation and analysis of a 40-kilobase-pair genome fragment from a planktonic marine archaeon. J Bacteriol 1996, 178:591-599.
-
(1996)
J Bacteriol
, vol.178
, pp. 591-599
-
-
Stein, J.L.1
Marsh, T.L.2
Wu, K.Y.3
Shizuya, H.4
DeLong, E.F.5
-
5
-
-
0032192790
-
Molecular biological access to the chemistry of unknown soil microbes: a new frontier for natural products
-
Handelsman J., Rondon M.R., Brady S.F., Clardy J., Goodman R.M. Molecular biological access to the chemistry of unknown soil microbes: a new frontier for natural products. Chem Biol 1998, 5:R245-R249.
-
(1998)
Chem Biol
, vol.5
-
-
Handelsman, J.1
Rondon, M.R.2
Brady, S.F.3
Clardy, J.4
Goodman, R.M.5
-
6
-
-
0031680049
-
Genomic analysis reveals chromosomal variation in natural populations of the uncultured psychrophilic archaeon Cenarchaeum symbiosum
-
Schleper C., DeLong E.F., Preston C.M., Feldman R.A., Wu K.Y., Swanson R.V. Genomic analysis reveals chromosomal variation in natural populations of the uncultured psychrophilic archaeon Cenarchaeum symbiosum. J Bacteriol 1998, 180:5003-5009.
-
(1998)
J Bacteriol
, vol.180
, pp. 5003-5009
-
-
Schleper, C.1
DeLong, E.F.2
Preston, C.M.3
Feldman, R.A.4
Wu, K.Y.5
Swanson, R.V.6
-
7
-
-
0037195156
-
Genomic analysis of uncultured marine viral communities
-
Breitbart M., Salamon P., Andresen B., Mahaffy J.M., Segall A.M., Mead D., Azam F., Rohwer F. Genomic analysis of uncultured marine viral communities. Proc Natl Acad Sci USA 2002, 99:14250-14255.
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 14250-14255
-
-
Breitbart, M.1
Salamon, P.2
Andresen, B.3
Mahaffy, J.M.4
Segall, A.M.5
Mead, D.6
Azam, F.7
Rohwer, F.8
-
8
-
-
0034665853
-
Bacterial rhodopsin: evidence for a new type of phototrophy in the sea
-
Béjà O., Aravind L., Koonin E.V., Suzuki M.T., Hadd A., Nguyen L.P., Jovanovich S.B., Gates C.M., Feldman R.A., Spudich J.L. Bacterial rhodopsin: evidence for a new type of phototrophy in the sea. Science 2000, 289:1902-1906.
-
(2000)
Science
, vol.289
, pp. 1902-1906
-
-
Béjà, O.1
Aravind, L.2
Koonin, E.V.3
Suzuki, M.T.4
Hadd, A.5
Nguyen, L.P.6
Jovanovich, S.B.7
Gates, C.M.8
Feldman, R.A.9
Spudich, J.L.10
-
9
-
-
79953007909
-
Microbial metagenomics: beyond the genome
-
Gilbert J.A., Dupont C.L. Microbial metagenomics: beyond the genome. Annu Rev Mar Sci 2011, 3:347-371.
-
(2011)
Annu Rev Mar Sci
, vol.3
, pp. 347-371
-
-
Gilbert, J.A.1
Dupont, C.L.2
-
10
-
-
11144354360
-
Environmental genome shotgun sequencing of the Sargasso Sea
-
Venter J.C., Remington K., Heidelberg J.F., Halpern A.L., Rusch D., Eisen J.A., Wu D., Paulsen I., Nelson K.E., Nelson W., et al. Environmental genome shotgun sequencing of the Sargasso Sea. Science 2004, 304:66-74.
-
(2004)
Science
, vol.304
, pp. 66-74
-
-
Venter, J.C.1
Remington, K.2
Heidelberg, J.F.3
Halpern, A.L.4
Rusch, D.5
Eisen, J.A.6
Wu, D.7
Paulsen, I.8
Nelson, K.E.9
Nelson, W.10
-
11
-
-
1542377296
-
Community structure and metabolism through reconstruction of microbial genomes from the environment
-
Tyson G.W., Chapman J., Hugenholtz P., Allen E.E., Ram R.J., Richardson P.M., Solovyev V.V., Rubin E.M., Rokhsar D.S., Banfield J.F. Community structure and metabolism through reconstruction of microbial genomes from the environment. Nature 2004, 428:37-43.
-
(2004)
Nature
, vol.428
, pp. 37-43
-
-
Tyson, G.W.1
Chapman, J.2
Hugenholtz, P.3
Allen, E.E.4
Ram, R.J.5
Richardson, P.M.6
Solovyev, V.V.7
Rubin, E.M.8
Rokhsar, D.S.9
Banfield, J.F.10
-
12
-
-
33947238287
-
The Sorcerer II Global Ocean Sampling expedition: northwest Atlantic through eastern tropical Pacific
-
Rusch D.B., Halpern A.L., Sutton G., Heidelberg K.B., Williamson S., Yooseph S., Wu D., Eisen J.A., Hoffman J.M., Remington K., et al. The Sorcerer II Global Ocean Sampling expedition: northwest Atlantic through eastern tropical Pacific. PLoS Biol 2007, 5:e77.
-
(2007)
PLoS Biol
, vol.5
-
-
Rusch, D.B.1
Halpern, A.L.2
Sutton, G.3
Heidelberg, K.B.4
Williamson, S.5
Yooseph, S.6
Wu, D.7
Eisen, J.A.8
Hoffman, J.M.9
Remington, K.10
-
13
-
-
33947235074
-
The Sorcerer II Global Ocean Sampling expedition: expanding the universe of protein families
-
Yooseph S., Sutton G., Rusch D.B., Halpern A.L., Williamson S.J., Remington K., Eisen J.A., Heidelberg K.B., Manning G., Li W., et al. The Sorcerer II Global Ocean Sampling expedition: expanding the universe of protein families. PLoS Biol 2007, 5:e16.
-
(2007)
PLoS Biol
, vol.5
-
-
Yooseph, S.1
Sutton, G.2
Rusch, D.B.3
Halpern, A.L.4
Williamson, S.J.5
Remington, K.6
Eisen, J.A.7
Heidelberg, K.B.8
Manning, G.9
Li, W.10
-
14
-
-
53549118607
-
The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes
-
Meyer F., Paarmann D., D'Souza M., Olson R., Glass E., Kubal M., Paczian T., Rodriguez A., Stevens R., Wilke A., et al. The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes. BMC Bioinform 2008, 9:386.
-
(2008)
BMC Bioinform
, vol.9
, pp. 386
-
-
Meyer, F.1
Paarmann, D.2
D'Souza, M.3
Olson, R.4
Glass, E.5
Kubal, M.6
Paczian, T.7
Rodriguez, A.8
Stevens, R.9
Wilke, A.10
-
15
-
-
78651266825
-
Community cyberinfrastructure for Advanced Microbial Ecology Research and Analysis: the CAMERA resource
-
Sun S., Chen J., Li W., Altintas I., Lin A., Peltier S., Stocks K., Allen E.E., Ellisman M., Grethe J., et al. Community cyberinfrastructure for Advanced Microbial Ecology Research and Analysis: the CAMERA resource. Nucleic Acids Res 2011, 39:D546-D551.
-
(2011)
Nucleic Acids Res
, vol.39
-
-
Sun, S.1
Chen, J.2
Li, W.3
Altintas, I.4
Lin, A.5
Peltier, S.6
Stocks, K.7
Allen, E.E.8
Ellisman, M.9
Grethe, J.10
-
16
-
-
84862024797
-
IMG/M: the integrated metagenome data management and comparative analysis system
-
Markowitz V.M., Chen I.M.A., Chu K., Szeto E., Palaniappan K., Grechkin Y., Ratner A., Jacob B., Pati A., Huntemann M., et al. IMG/M: the integrated metagenome data management and comparative analysis system. Nucleic Acids Res 2011, 40:D123-D129.
-
(2011)
Nucleic Acids Res
, vol.40
-
-
Markowitz, V.M.1
Chen, I.M.A.2
Chu, K.3
Szeto, E.4
Palaniappan, K.5
Grechkin, Y.6
Ratner, A.7
Jacob, B.8
Pati, A.9
Huntemann, M.10
-
17
-
-
45749093727
-
Toward a standards-compliant genomic and metagenomic publication record
-
Garrity G.M., Field D., Kyrpides N., Hirschman L., Sansone S.-A., Angiuoli S., Cole J.R., Glöckner F.O., Kolker E., Kowalchuk G., et al. Toward a standards-compliant genomic and metagenomic publication record. OMICS 2008, 12:157-160.
-
(2008)
OMICS
, vol.12
, pp. 157-160
-
-
Garrity, G.M.1
Field, D.2
Kyrpides, N.3
Hirschman, L.4
Sansone, S.-A.5
Angiuoli, S.6
Cole, J.R.7
Glöckner, F.O.8
Kolker, E.9
Kowalchuk, G.10
-
18
-
-
27444438599
-
The microbial pan-genome
-
Medini D., Donati C., Tettelin H., Masignani V., Rappuoli R. The microbial pan-genome. Curr Opin Genet Dev 2005, 15:589-594.
-
(2005)
Curr Opin Genet Dev
, vol.15
, pp. 589-594
-
-
Medini, D.1
Donati, C.2
Tettelin, H.3
Masignani, V.4
Rappuoli, R.5
-
19
-
-
37749041470
-
Patterns and implications of gene gain and loss in the evolution of Prochlorococcus
-
Kettler G.C., Martiny A.C., Huang K., Zucker J., Coleman M.L., Rodrigue S., Chen F., Lapidus A., Ferriera S., Johnson J., et al. Patterns and implications of gene gain and loss in the evolution of Prochlorococcus. PLoS Genet 2007, 3:e231.
-
(2007)
PLoS Genet
, vol.3
-
-
Kettler, G.C.1
Martiny, A.C.2
Huang, K.3
Zucker, J.4
Coleman, M.L.5
Rodrigue, S.6
Chen, F.7
Lapidus, A.8
Ferriera, S.9
Johnson, J.10
-
20
-
-
38849200974
-
Natural variation in SAR11 marine bacterioplankton genomes inferred from metagenomic data
-
Wilhelm L.J., Tripp H.J., Givan S.A., Smith D.P., Giovannoni S.J. Natural variation in SAR11 marine bacterioplankton genomes inferred from metagenomic data. Biol Direct 2007, 2:27.
-
(2007)
Biol Direct
, vol.2
, pp. 27
-
-
Wilhelm, L.J.1
Tripp, H.J.2
Givan, S.A.3
Smith, D.P.4
Giovannoni, S.J.5
-
21
-
-
41649109613
-
Functional metagenomic profiling of nine biomes
-
Dinsdale E.A., Edwards R.A., Hall D., Angly F., Breitbart M., Brulc J.M., Furlan M., Desnues C., Haynes M., Li L., et al. Functional metagenomic profiling of nine biomes. Nature 2008, 452:629-632.
-
(2008)
Nature
, vol.452
, pp. 629-632
-
-
Dinsdale, E.A.1
Edwards, R.A.2
Hall, D.3
Angly, F.4
Breitbart, M.5
Brulc, J.M.6
Furlan, M.7
Desnues, C.8
Haynes, M.9
Li, L.10
-
22
-
-
77958014098
-
Characterization of Prochlorococcus clades from iron-depleted oceanic regions
-
Rusch D.B., Martiny A.C., Dupont C.L., Halpern A.L., Venter J.C. Characterization of Prochlorococcus clades from iron-depleted oceanic regions. Proc Natl Acad Sci USA 2010, 107:16184-16189.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 16184-16189
-
-
Rusch, D.B.1
Martiny, A.C.2
Dupont, C.L.3
Halpern, A.L.4
Venter, J.C.5
-
23
-
-
70350180460
-
Explaining microbial population genomics through phage predation
-
Rodriguez-Valera F., Martin-Cuadrado A.-B., Rodriguez-Brito B., Pašić L., Thingstad T.F., Rohwer F., Mira A. Explaining microbial population genomics through phage predation. Nat Rev Microbiol 2009, 7:828-836.
-
(2009)
Nat Rev Microbiol
, vol.7
, pp. 828-836
-
-
Rodriguez-Valera, F.1
Martin-Cuadrado, A.-B.2
Rodriguez-Brito, B.3
Pašić, L.4
Thingstad, T.F.5
Rohwer, F.6
Mira, A.7
-
24
-
-
46249109847
-
Trends in selenium utilization in marine microbial world revealed through the analysis of the Global Ocean Sampling (GOS) Project
-
Zhang Y., Gladyshev V.N. Trends in selenium utilization in marine microbial world revealed through the analysis of the Global Ocean Sampling (GOS) Project. PLoS Genet 2008, 4:e1000095.
-
(2008)
PLoS Genet
, vol.4
-
-
Zhang, Y.1
Gladyshev, V.N.2
-
25
-
-
67349186252
-
The alkaline phosphatase PhoX is more widely distributed in marine bacteria than the classical PhoA
-
Sebastian M., Ammerman J.W. The alkaline phosphatase PhoX is more widely distributed in marine bacteria than the classical PhoA. ISME J 2009, 3:563-572.
-
(2009)
ISME J
, vol.3
, pp. 563-572
-
-
Sebastian, M.1
Ammerman, J.W.2
-
26
-
-
75849143326
-
Subcellular localization of marine bacterial alkaline phosphatases
-
Luo H., Benner R., Long R.A., Hu J. Subcellular localization of marine bacterial alkaline phosphatases. Proc Natl Acad Sci USA 2009, 106:21219-21223.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 21219-21223
-
-
Luo, H.1
Benner, R.2
Long, R.A.3
Hu, J.4
-
27
-
-
79551564459
-
Novel analysis of oceanic surface water metagenomes suggests importance of polyphosphate metabolism in oligotrophic environments
-
Temperton B., Gilbert J.A., Quinn J.P., McGrath J.W. Novel analysis of oceanic surface water metagenomes suggests importance of polyphosphate metabolism in oligotrophic environments. PLoS ONE 2011, 6:e16499.
-
(2011)
PLoS ONE
, vol.6
-
-
Temperton, B.1
Gilbert, J.A.2
Quinn, J.P.3
McGrath, J.W.4
-
28
-
-
84856432606
-
Predicted Relative Metabolomic Turnover (PRMT): determining metabolic turnover from a coastal marine metagenomic dataset
-
Larsen P.E., Collart F.R., Field D., Meyer F., Keegan K.P., Henry C.S., McGrath J., Quinn J., Gilbert J.A. Predicted Relative Metabolomic Turnover (PRMT): determining metabolic turnover from a coastal marine metagenomic dataset. Microb Inform Exp 2011, 1:4.
-
(2011)
Microb Inform Exp
, vol.1
, pp. 4
-
-
Larsen, P.E.1
Collart, F.R.2
Field, D.3
Meyer, F.4
Keegan, K.P.5
Henry, C.S.6
McGrath, J.7
Quinn, J.8
Gilbert, J.A.9
-
29
-
-
33847280283
-
Prediction of effective genome size in metagenomic samples
-
Raes J., Korbel J.O., Lercher M.J., Mering von C., Bork P. Prediction of effective genome size in metagenomic samples. Genome Biol 2007, 8:R10.
-
(2007)
Genome Biol
, vol.8
-
-
Raes, J.1
Korbel, J.O.2
Lercher, M.J.3
Mering von, C.4
Bork, P.5
-
30
-
-
70349993601
-
ShotgunFunctionalizeR: an R-package for functional comparison of metagenomes
-
Kristiansson E., Hugenholtz P., Dalevi D. ShotgunFunctionalizeR: an R-package for functional comparison of metagenomes. Bioinformatics 2009, 25:2737-2738.
-
(2009)
Bioinformatics
, vol.25
, pp. 2737-2738
-
-
Kristiansson, E.1
Hugenholtz, P.2
Dalevi, D.3
-
31
-
-
77954834592
-
Average genome size: a potential source of bias in comparative metagenomics
-
Beszteri B., Temperton B., Frickenhaus S., Giovannoni S.J. Average genome size: a potential source of bias in comparative metagenomics. ISME J 2010, 4:1075-1077.
-
(2010)
ISME J
, vol.4
, pp. 1075-1077
-
-
Beszteri, B.1
Temperton, B.2
Frickenhaus, S.3
Giovannoni, S.J.4
-
32
-
-
40149103278
-
Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex
-
Hamady M., Walker J.J., Harris J.K., Gold N.J., Knight R. Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex. Nat Methods 2008, 5:235-237.
-
(2008)
Nat Methods
, vol.5
, pp. 235-237
-
-
Hamady, M.1
Walker, J.J.2
Harris, J.K.3
Gold, N.J.4
Knight, R.5
-
33
-
-
84855958621
-
Defining seasonal marine microbial community dynamics
-
Gilbert J.A., Steele J.A., Caporaso J.G., Steinbrück L., Reeder J., Temperton B., Huse S., McHardy A.C., Knight R., Joint I., et al. Defining seasonal marine microbial community dynamics. ISME J 2012, 6:298-308.
-
(2012)
ISME J
, vol.6
, pp. 298-308
-
-
Gilbert, J.A.1
Steele, J.A.2
Caporaso, J.G.3
Steinbrück, L.4
Reeder, J.5
Temperton, B.6
Huse, S.7
McHardy, A.C.8
Knight, R.9
Joint, I.10
-
34
-
-
80055082475
-
A holistic approach to marine eco-systems biology
-
Karsenti E., Acinas S.G., Bork P., Bowler C., De Vargas C., Raes J., Sullivan M., Arendt D., Benzoni F., Claverie J.-M., et al. A holistic approach to marine eco-systems biology. PLoS Biol 2011, 9:e1001177.
-
(2011)
PLoS Biol
, vol.9
-
-
Karsenti, E.1
Acinas, S.G.2
Bork, P.3
Bowler, C.4
De Vargas, C.5
Raes, J.6
Sullivan, M.7
Arendt, D.8
Benzoni, F.9
Claverie, J.-M.10
-
35
-
-
35348968286
-
The Human Microbiome Project
-
Turnbaugh P.J., Ley R.E., Hamady M., Fraser-Liggett C.M., Knight R., Gordon J.I. The Human Microbiome Project. Nature 2007, 449:804-810.
-
(2007)
Nature
, vol.449
, pp. 804-810
-
-
Turnbaugh, P.J.1
Ley, R.E.2
Hamady, M.3
Fraser-Liggett, C.M.4
Knight, R.5
Gordon, J.I.6
-
36
-
-
77950251400
-
A human gut microbial gene catalogue established by metagenomic sequencing
-
Qin J., Li R., Raes J., Arumugam M., Burgdorf K.S., Manichanh C., Nielsen T., Pons N., Levenez F., Yamada T., et al. A human gut microbial gene catalogue established by metagenomic sequencing. Nature 2010, 464:59-65.
-
(2010)
Nature
, vol.464
, pp. 59-65
-
-
Qin, J.1
Li, R.2
Raes, J.3
Arumugam, M.4
Burgdorf, K.S.5
Manichanh, C.6
Nielsen, T.7
Pons, N.8
Levenez, F.9
Yamada, T.10
-
37
-
-
77952734936
-
High-throughput DNA sequencing - concepts and limitations
-
Kircher M., Kelso J. High-throughput DNA sequencing - concepts and limitations. Bioessays 2010, 32:524-536.
-
(2010)
Bioessays
, vol.32
, pp. 524-536
-
-
Kircher, M.1
Kelso, J.2
-
38
-
-
84862024684
-
Unlocking the potential of metagenomics through replicated experimental design
-
Knight R., Jansson J., Field D., Fierer N., Desai N., Fuhrman J.A., Hugenholtz P., van der Lelie D., Meyer F., Stevens R., et al. Unlocking the potential of metagenomics through replicated experimental design. Nat Biotechnol 2012, 30:513-520.
-
(2012)
Nat Biotechnol
, vol.30
, pp. 513-520
-
-
Knight, R.1
Jansson, J.2
Field, D.3
Fierer, N.4
Desai, N.5
Fuhrman, J.A.6
Hugenholtz, P.7
van der Lelie, D.8
Meyer, F.9
Stevens, R.10
-
39
-
-
33745595097
-
Using pyrosequencing to shed light on deep mine microbial ecology
-
Edwards R.A., Rodriguez-Brito B., Wegley L., Haynes M., Breitbart M., Peterson D.M., Saar M.O., Alexander S., Alexander E.C., Rohwer F. Using pyrosequencing to shed light on deep mine microbial ecology. BMC Genomics 2006, 7:57.
-
(2006)
BMC Genomics
, vol.7
, pp. 57
-
-
Edwards, R.A.1
Rodriguez-Brito, B.2
Wegley, L.3
Haynes, M.4
Breitbart, M.5
Peterson, D.M.6
Saar, M.O.7
Alexander, S.8
Alexander, E.C.9
Rohwer, F.10
-
40
-
-
80052028523
-
The real cost of sequencing: higher than you think!
-
Sboner A., Mu X.J., Greenbaum D., Auerbach R.K., Gerstein M.B. The real cost of sequencing: higher than you think!. Genome Biol 2011, 12:125.
-
(2011)
Genome Biol
, vol.12
, pp. 125
-
-
Sboner, A.1
Mu, X.J.2
Greenbaum, D.3
Auerbach, R.K.4
Gerstein, M.B.5
-
41
-
-
77749237076
-
Pyrosequencing of Mytilus galloprovincialis cDNAs: tissue-specific expression patterns
-
Craft J.A., Gilbert J.A., Temperton B., Dempsey K.E., Ashelford K., Tiwari B., Hutchinson T.H., Chipman J.K. Pyrosequencing of Mytilus galloprovincialis cDNAs: tissue-specific expression patterns. PLoS ONE 2010, 5:e8875.
-
(2010)
PLoS ONE
, vol.5
-
-
Craft, J.A.1
Gilbert, J.A.2
Temperton, B.3
Dempsey, K.E.4
Ashelford, K.5
Tiwari, B.6
Hutchinson, T.H.7
Chipman, J.K.8
-
42
-
-
77957025820
-
Targeted metagenomics and ecology of globally important uncultured eukaryotic phytoplankton
-
Cuvelier M.L., Allen A.E., Monier A., McCrow J.P., Messié M., Tringe S.G., Woyke T., Welsh R.M., Ishoey T., Lee J.-H., et al. Targeted metagenomics and ecology of globally important uncultured eukaryotic phytoplankton. Proc Natl Acad Sci USA 2010, 107:14679-14684.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 14679-14684
-
-
Cuvelier, M.L.1
Allen, A.E.2
Monier, A.3
McCrow, J.P.4
Messié, M.5
Tringe, S.G.6
Woyke, T.7
Welsh, R.M.8
Ishoey, T.9
Lee, J.-H.10
-
43
-
-
77649174627
-
Metagenome and mRNA expression analyses of anaerobic methanotrophic archaea of the ANME-1 group
-
Meyerdierks A., Kube M., Kostadinov I., Teeling H., Glöckner F.O., Reinhardt R., Amann R. Metagenome and mRNA expression analyses of anaerobic methanotrophic archaea of the ANME-1 group. Environ Microbiol 2010, 12:422-439.
-
(2010)
Environ Microbiol
, vol.12
, pp. 422-439
-
-
Meyerdierks, A.1
Kube, M.2
Kostadinov, I.3
Teeling, H.4
Glöckner, F.O.5
Reinhardt, R.6
Amann, R.7
-
44
-
-
41649114407
-
Microbial community gene expression in ocean surface waters
-
Frias-Lopez J., Shi Y., Tyson G.W., Coleman M.L., Schuster S.C., Chisholm S.W., DeLong E.F. Microbial community gene expression in ocean surface waters. Proc Natl Acad Sci USA 2008, 105:3805.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 3805
-
-
Frias-Lopez, J.1
Shi, Y.2
Tyson, G.W.3
Coleman, M.L.4
Schuster, S.C.5
Chisholm, S.W.6
DeLong, E.F.7
-
45
-
-
79961061069
-
Methylotrophy in a lake: from metagenomics to single-organism physiology
-
Chistoserdova L. Methylotrophy in a lake: from metagenomics to single-organism physiology. Appl Environ Microbiol 2011, 77:4705-4711.
-
(2011)
Appl Environ Microbiol
, vol.77
, pp. 4705-4711
-
-
Chistoserdova, L.1
-
46
-
-
33751059692
-
The marine viromes of four oceanic regions
-
Angly F.E., Felts B., Breitbart M., Salamon P., Edwards R.A., Carlson C., Chan A.M., Haynes M., Kelley S., Liu H., et al. The marine viromes of four oceanic regions. PLoS Biol 2006, 4:e368.
-
(2006)
PLoS Biol
, vol.4
-
-
Angly, F.E.1
Felts, B.2
Breitbart, M.3
Salamon, P.4
Edwards, R.A.5
Carlson, C.6
Chan, A.M.7
Haynes, M.8
Kelley, S.9
Liu, H.10
-
47
-
-
38449087833
-
Metagenomic characterization of Chesapeake Bay virioplankton
-
Bench S.R., Hanson T.E., Williamson K.E., Ghosh D., Radosovich M., Wang K., Wommack K.E. Metagenomic characterization of Chesapeake Bay virioplankton. Appl Environ Microbiol 2007, 73:7629-7641.
-
(2007)
Appl Environ Microbiol
, vol.73
, pp. 7629-7641
-
-
Bench, S.R.1
Hanson, T.E.2
Williamson, K.E.3
Ghosh, D.4
Radosovich, M.5
Wang, K.6
Wommack, K.E.7
-
48
-
-
66149101252
-
Metagenomic analyses of viruses in stool samples from children with acute flaccid paralysis
-
Victoria J.G., Kapoor A., Li L., Blinkova O., Slikas B., Wang C., Naeem A., Zaidi S., Delwart E. Metagenomic analyses of viruses in stool samples from children with acute flaccid paralysis. J Virol 2009, 83:4642-4651.
-
(2009)
J Virol
, vol.83
, pp. 4642-4651
-
-
Victoria, J.G.1
Kapoor, A.2
Li, L.3
Blinkova, O.4
Slikas, B.5
Wang, C.6
Naeem, A.7
Zaidi, S.8
Delwart, E.9
-
49
-
-
72949103741
-
New dimensions of the virus world discovered through metagenomics
-
Kristensen D.M., Mushegian A.R., Dolja V.V., Koonin E.V. New dimensions of the virus world discovered through metagenomics. Trends Microbiol 2010, 18:11-19.
-
(2010)
Trends Microbiol
, vol.18
, pp. 11-19
-
-
Kristensen, D.M.1
Mushegian, A.R.2
Dolja, V.V.3
Koonin, E.V.4
-
50
-
-
70350731109
-
Windshield splatter analysis with the Galaxy metagenomic pipeline
-
The Galaxy Team
-
Kosakovsky Pond S., Wadhawan S., Chiaromonte F., Ananda G., Chung W.Y., Taylor J., Nekrutenko A. Windshield splatter analysis with the Galaxy metagenomic pipeline. Genome Res 2009, 19:2144-2153. The Galaxy Team.
-
(2009)
Genome Res
, vol.19
, pp. 2144-2153
-
-
Kosakovsky Pond, S.1
Wadhawan, S.2
Chiaromonte, F.3
Ananda, G.4
Chung, W.Y.5
Taylor, J.6
Nekrutenko, A.7
-
51
-
-
68549130740
-
Comparison of species richness estimates obtained using nearly complete fragments and simulated pyrosequencing-generated fragments in 16S rRNA gene-based environmental surveys
-
Youssef N., Sheik C.S., Krumholz L.R., Najar F.Z., Roe B.A., Elshahed M.S. Comparison of species richness estimates obtained using nearly complete fragments and simulated pyrosequencing-generated fragments in 16S rRNA gene-based environmental surveys. Appl Environ Microbiol 2009, 75:5227-5236.
-
(2009)
Appl Environ Microbiol
, vol.75
, pp. 5227-5236
-
-
Youssef, N.1
Sheik, C.S.2
Krumholz, L.R.3
Najar, F.Z.4
Roe, B.A.5
Elshahed, M.S.6
-
52
-
-
69549129476
-
The "rare biosphere": a reality check
-
Reeder J., Knight R. The "rare biosphere": a reality check. Nat Methods 2009, 6:636-637.
-
(2009)
Nat Methods
, vol.6
, pp. 636-637
-
-
Reeder, J.1
Knight, R.2
-
53
-
-
70350294348
-
Systematic artifacts in metagenomes from complex microbial communities
-
Gomez-Alvarez V., Teal T.K., Schmidt T.M. Systematic artifacts in metagenomes from complex microbial communities. ISME J 2009, 3:1314-1317.
-
(2009)
ISME J
, vol.3
, pp. 1314-1317
-
-
Gomez-Alvarez, V.1
Teal, T.K.2
Schmidt, T.M.3
-
54
-
-
73349110099
-
Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates
-
Kunin V., Engelbrektson A., Ochman H., Hugenholtz P. Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates. Environ Microbiol 2010, 12:118-123.
-
(2010)
Environ Microbiol
, vol.12
, pp. 118-123
-
-
Kunin, V.1
Engelbrektson, A.2
Ochman, H.3
Hugenholtz, P.4
-
55
-
-
79952006773
-
Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons
-
Haas B.J., Gevers D., Earl A.M., Feldgarden M., Ward D.V., Giannoukos G., Ciulla D., Tabbaa D., Highlander S.K., Sodergren E., et al. Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons. Genome Res 2011, 21:494-504.
-
(2011)
Genome Res
, vol.21
, pp. 494-504
-
-
Haas, B.J.1
Gevers, D.2
Earl, A.M.3
Feldgarden, M.4
Ward, D.V.5
Giannoukos, G.6
Ciulla, D.7
Tabbaa, D.8
Highlander, S.K.9
Sodergren, E.10
-
56
-
-
79251565226
-
Removing noise from pyrosequenced amplicons
-
Quince C., Lanzén A., Davenport R.J., Turnbaugh P.J. Removing noise from pyrosequenced amplicons. BMC Bioinformatics 2011, 12:38.
-
(2011)
BMC Bioinformatics
, vol.12
, pp. 38
-
-
Quince, C.1
Lanzén, A.2
Davenport, R.J.3
Turnbaugh, P.J.4
-
57
-
-
68549132517
-
Assessment of bias associated with incomplete extraction of microbial DNA from soil
-
Feinstein L.M., Sul W.J., Blackwood C.B. Assessment of bias associated with incomplete extraction of microbial DNA from soil. Appl Environ Microbiol 2009, 75:5428-5433.
-
(2009)
Appl Environ Microbiol
, vol.75
, pp. 5428-5433
-
-
Feinstein, L.M.1
Sul, W.J.2
Blackwood, C.B.3
-
58
-
-
67949095970
-
Bias in assessments of marine microbial biodiversity in fosmid libraries as evaluated by pyrosequencing
-
Temperton B., Field D., Oliver A., Tiwari B., Mühling M., Joint I., Gilbert J.A. Bias in assessments of marine microbial biodiversity in fosmid libraries as evaluated by pyrosequencing. ISME J 2009, 3:792-796.
-
(2009)
ISME J
, vol.3
, pp. 792-796
-
-
Temperton, B.1
Field, D.2
Oliver, A.3
Tiwari, B.4
Mühling, M.5
Joint, I.6
Gilbert, J.A.7
-
59
-
-
84867741658
-
Comparison of large-insert, small-insert and pyrosequencing libraries for metagenomic analysis
-
Danhorn T., Young C.R., DeLong E.F. Comparison of large-insert, small-insert and pyrosequencing libraries for metagenomic analysis. ISME J 2012, 10.1038/ismej.2012.35.
-
(2012)
ISME J
-
-
Danhorn, T.1
Young, C.R.2
DeLong, E.F.3
-
60
-
-
78651326786
-
FragGeneScan: predicting genes in short and error-prone reads
-
Rho M., Tang H., Ye Y. FragGeneScan: predicting genes in short and error-prone reads. Nucleic Acids Res 2010, 38:e191.
-
(2010)
Nucleic Acids Res
, vol.38
-
-
Rho, M.1
Tang, H.2
Ye, Y.3
-
62
-
-
84857524013
-
Assessment of metagenomic assembly using simulated next generation sequencing data
-
Mende D.R., Waller A.S., Sunagawa S., Järvelin A.I., Chan M.M., Arumugam M., Raes J., Bork P. Assessment of metagenomic assembly using simulated next generation sequencing data. PLoS ONE 2012, 7:e31386.
-
(2012)
PLoS ONE
, vol.7
-
-
Mende, D.R.1
Waller, A.S.2
Sunagawa, S.3
Järvelin, A.I.4
Chan, M.M.5
Arumugam, M.6
Raes, J.7
Bork, P.8
-
63
-
-
77649128177
-
The presence of the glycolysis operon in SAR11 genomes is positively correlated with ocean productivity
-
Schwalbach M.S., Tripp H.J., Steindler L., Smith D.P., Giovannoni S.J. The presence of the glycolysis operon in SAR11 genomes is positively correlated with ocean productivity. Environ Microbiol 2010, 12:490-500.
-
(2010)
Environ Microbiol
, vol.12
, pp. 490-500
-
-
Schwalbach, M.S.1
Tripp, H.J.2
Steindler, L.3
Smith, D.P.4
Giovannoni, S.J.5
-
64
-
-
80051997986
-
One carbon metabolism in SAR11 pelagic marine bacteria
-
Sun J., Steindler L., Thrash J.C., Halsey K.H., Smith D.P., Carter A.E., Landry Z.C., Giovannoni S.J. One carbon metabolism in SAR11 pelagic marine bacteria. PLoS ONE 2011, 6:e23973.
-
(2011)
PLoS ONE
, vol.6
-
-
Sun, J.1
Steindler, L.2
Thrash, J.C.3
Halsey, K.H.4
Smith, D.P.5
Carter, A.E.6
Landry, Z.C.7
Giovannoni, S.J.8
-
65
-
-
80055095638
-
Bacterial flavin-containing monooxygenase is trimethylamine monooxygenase
-
Chen Y., Patel N.A., Crombie A., Scrivens J.H., Murrell J.C. Bacterial flavin-containing monooxygenase is trimethylamine monooxygenase. Proc Natl Acad Sci USA 2011, 108:17791-17796.
-
(2011)
Proc Natl Acad Sci USA
, vol.108
, pp. 17791-17796
-
-
Chen, Y.1
Patel, N.A.2
Crombie, A.3
Scrivens, J.H.4
Murrell, J.C.5
-
66
-
-
84858867067
-
Potential for phosphite and phosphonate utilization by Prochlorococcus
-
Feingersch R., Philosof A., Mejuch T., Glaser F., Alalouf O., Shoham Y., agrave O.B.E.J. Potential for phosphite and phosphonate utilization by Prochlorococcus. ISME J 2011, 6:827-834.
-
(2011)
ISME J
, vol.6
, pp. 827-834
-
-
Feingersch, R.1
Philosof, A.2
Mejuch, T.3
Glaser, F.4
Alalouf, O.5
Shoham, Y.6
agrave, O.B.E.J.7
-
67
-
-
33748776559
-
Automated protein function prediction - the genomic challenge
-
Friedberg I. Automated protein function prediction - the genomic challenge. Brief Bioinform 2006, 7:225-242.
-
(2006)
Brief Bioinform
, vol.7
, pp. 225-242
-
-
Friedberg, I.1
-
68
-
-
0031976258
-
Phylogenomics: improving functional predictions for uncharacterized genes by evolutionary analysis
-
Eisen J.A. Phylogenomics: improving functional predictions for uncharacterized genes by evolutionary analysis. Genome Res 1998, 8:163-167.
-
(1998)
Genome Res
, vol.8
, pp. 163-167
-
-
Eisen, J.A.1
-
69
-
-
80051688000
-
Field guide to next-generation DNA sequencers
-
Glenn T.C. Field guide to next-generation DNA sequencers. Mol Ecol Resour 2011, 11:759-769.
-
(2011)
Mol Ecol Resour
, vol.11
, pp. 759-769
-
-
Glenn, T.C.1
-
70
-
-
83055181941
-
Assemblathon 1: a competitive assessment of de novo short read assembly methods
-
Earl D., Bradnam K., St John J., Darling A., Lin D., Fass J., Yu H.O.K., Buffalo V., Zerbino D.R., Diekhans M., et al. Assemblathon 1: a competitive assessment of de novo short read assembly methods. Genome Res 2011, 21:2224-2241.
-
(2011)
Genome Res
, vol.21
, pp. 2224-2241
-
-
Earl, D.1
Bradnam, K.2
St John, J.3
Darling, A.4
Lin, D.5
Fass, J.6
Yu, H.O.K.7
Buffalo, V.8
Zerbino, D.R.9
Diekhans, M.10
-
72
-
-
79956366297
-
Evaluating the fidelity of de novo short read metagenomic assembly using simulated data
-
Pignatelli M., Moya A. Evaluating the fidelity of de novo short read metagenomic assembly using simulated data. PLoS ONE 2011, 6:e19984.
-
(2011)
PLoS ONE
, vol.6
-
-
Pignatelli, M.1
Moya, A.2
-
73
-
-
79960872039
-
Evaluation of short read metagenomic assembly
-
Charuvaka A., Rangwala H. Evaluation of short read metagenomic assembly. BMC Genomics 2011, 12:S8.
-
(2011)
BMC Genomics
, vol.12
-
-
Charuvaka, A.1
Rangwala, H.2
-
74
-
-
84856456747
-
From genomics to metagenomics
-
Desai N., Antonopoulos D., Gilbert J.A., Glass E.M., Meyer F. From genomics to metagenomics. Curr Opin Biotechnol 2012, 23:72-76.
-
(2012)
Curr Opin Biotechnol
, vol.23
, pp. 72-76
-
-
Desai, N.1
Antonopoulos, D.2
Gilbert, J.A.3
Glass, E.M.4
Meyer, F.5
-
75
-
-
43149115851
-
Velvet: algorithms for de novo short read assembly using de Bruijn graphs
-
Zerbino D.R., Birney E. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res 2008, 18:821-829.
-
(2008)
Genome Res
, vol.18
, pp. 821-829
-
-
Zerbino, D.R.1
Birney, E.2
-
76
-
-
66449136667
-
ABySS: a parallel assembler for short read sequence data
-
Simpson J.T., Wong K., Jackman S.D., Schein J.E., Jones S.J.M., Birol I. ABySS: a parallel assembler for short read sequence data. Genome Res 2009, 19:1117-1123.
-
(2009)
Genome Res
, vol.19
, pp. 1117-1123
-
-
Simpson, J.T.1
Wong, K.2
Jackman, S.D.3
Schein, J.E.4
Jones, S.J.M.5
Birol, I.6
-
77
-
-
84872043258
-
A reference-free algorithm for computational normalization of shotgun sequencing data
-
arXiv:1203.4802v2 [q-bio.GN] 2012.
-
Brown CT, Howe A, Zhang Q, Pyrkosz AB, Brom TH: A reference-free algorithm for computational normalization of shotgun sequencing data. arXiv:1203.4802v2 [q-bio.GN] 2012.
-
-
-
Brown, C.T.1
Howe, A.2
Zhang, Q.3
Pyrkosz, A.B.4
Brom, T.H.5
-
78
-
-
77951498518
-
AMD biofilms: using model communities to study microbial evolution and ecological complexity in nature
-
Denef V.J., Mueller R.S., Banfield J.F. AMD biofilms: using model communities to study microbial evolution and ecological complexity in nature. ISME J 2010, 4:599-610.
-
(2010)
ISME J
, vol.4
, pp. 599-610
-
-
Denef, V.J.1
Mueller, R.S.2
Banfield, J.F.3
-
79
-
-
77953272819
-
Ecological distribution and population physiology defined by proteomics in a natural microbial community
-
Mueller R.S., Denef V.J., Kalnejais L.H., Suttle K.B., Thomas B.C., Wilmes P., Smith R.L., Nordstrom D.K., McCleskey R.B., Shah M.B., et al. Ecological distribution and population physiology defined by proteomics in a natural microbial community. Mol Syst Biol 2010, 6:1-12.
-
(2010)
Mol Syst Biol
, vol.6
, pp. 1-12
-
-
Mueller, R.S.1
Denef, V.J.2
Kalnejais, L.H.3
Suttle, K.B.4
Thomas, B.C.5
Wilmes, P.6
Smith, R.L.7
Nordstrom, D.K.8
McCleskey, R.B.9
Shah, M.B.10
-
80
-
-
84858863014
-
Individual genome assembly from complex community short-read metagenomic datasets
-
Luo C., Tsementzi D., Kyrpides N.C., Konstantinidis K.T. Individual genome assembly from complex community short-read metagenomic datasets. ISME J 2011, 6:898-901.
-
(2011)
ISME J
, vol.6
, pp. 898-901
-
-
Luo, C.1
Tsementzi, D.2
Kyrpides, N.C.3
Konstantinidis, K.T.4
-
81
-
-
84859149175
-
Reconstructing viral genomes from the environment using fosmid clones: the case of Haloviruses
-
Garcia-Heredia I., Martin-Cuadrado A.-B., Mojica F.J.M., Santos F., Mira A., Antón J., Rodriguez-Valera F. Reconstructing viral genomes from the environment using fosmid clones: the case of Haloviruses. PLoS ONE 2012, 7:e33802.
-
(2012)
PLoS ONE
, vol.7
-
-
Garcia-Heredia, I.1
Martin-Cuadrado, A.-B.2
Mojica, F.J.M.3
Santos, F.4
Mira, A.5
Antón, J.6
Rodriguez-Valera, F.7
-
82
-
-
67149088568
-
An ORFome assembly approach to metagenomics sequences analysis
-
Ye Y., Tang H. An ORFome assembly approach to metagenomics sequences analysis. J Bioinform Comput Biol 2009, 7:455-471.
-
(2009)
J Bioinform Comput Biol
, vol.7
, pp. 455-471
-
-
Ye, Y.1
Tang, H.2
-
83
-
-
79952374428
-
Genovo: de novo assembly for metagenomes
-
Laserson J., Jojic V., Koller D. Genovo: de novo assembly for metagenomes. J Comput Biol 2011, 18:429-443.
-
(2011)
J Comput Biol
, vol.18
, pp. 429-443
-
-
Laserson, J.1
Jojic, V.2
Koller, D.3
-
84
-
-
84858992875
-
MetaVelvet: an extension of Velvet assembler to de novo metagenome assembly from short sequence reads. BCB '11
-
ACM, New York, NY, USA
-
Namiki T., Hachiya T., Tanaka H., Sakakibara Y. MetaVelvet: an extension of Velvet assembler to de novo metagenome assembly from short sequence reads. BCB '11. Proceedings of the 2nd ACM Conference on Bioinformatics, Computational Biology and Biomedicine 2011, ACM, New York, NY, USA.
-
(2011)
Proceedings of the 2nd ACM Conference on Bioinformatics, Computational Biology and Biomedicine
-
-
Namiki, T.1
Hachiya, T.2
Tanaka, H.3
Sakakibara, Y.4
-
86
-
-
84856659328
-
Untangling genomes from metagenomes: revealing an uncultured class of marine Euryarchaeota
-
Iverson V., Morris R.M., Frazar C.D., Berthiaume C.T., Morales R.L., Armbrust E.V. Untangling genomes from metagenomes: revealing an uncultured class of marine Euryarchaeota. Science 2012, 335:587-590.
-
(2012)
Science
, vol.335
, pp. 587-590
-
-
Iverson, V.1
Morris, R.M.2
Frazar, C.D.3
Berthiaume, C.T.4
Morales, R.L.5
Armbrust, E.V.6
-
87
-
-
35748983784
-
Single-cell genomic sequencing using Multiple Displacement Amplification
-
Lasken R.S. Single-cell genomic sequencing using Multiple Displacement Amplification. Curr Opin Microbiol 2007, 10:510-516.
-
(2007)
Curr Opin Microbiol
, vol.10
, pp. 510-516
-
-
Lasken, R.S.1
-
88
-
-
45849153461
-
Genomic sequencing of single microbial cells from environmental samples
-
Ishoey T., Woyke T., Stepanauskas R., Novotny M., Lasken R.S. Genomic sequencing of single microbial cells from environmental samples. Curr Opin Microbiol 2008, 11:198-204.
-
(2008)
Curr Opin Microbiol
, vol.11
, pp. 198-204
-
-
Ishoey, T.1
Woyke, T.2
Stepanauskas, R.3
Novotny, M.4
Lasken, R.S.5
-
89
-
-
80054732674
-
Efficient de novo assembly of single-cell bacterial genomes from short-read data sets
-
Chitsaz H., Yee-Greenbaum J.L., Tesler G., Lombardo M.-J., Dupont C.L., Badger J.H., Novotny M., Rusch D.B., Fraser L.J., Gormley N.A., et al. Efficient de novo assembly of single-cell bacterial genomes from short-read data sets. Nat Biotechnol 2011, 29:915-921.
-
(2011)
Nat Biotechnol
, vol.29
, pp. 915-921
-
-
Chitsaz, H.1
Yee-Greenbaum, J.L.2
Tesler, G.3
Lombardo, M.-J.4
Dupont, C.L.5
Badger, J.H.6
Novotny, M.7
Rusch, D.B.8
Fraser, L.J.9
Gormley, N.A.10
-
90
-
-
84861342496
-
Genomic insights to SAR86, an abundant and uncultivated marine bacterial lineage
-
Dupont C.L., Rusch D.B., Yooseph S., Lombardo M.-J., Alexander Richter R., Valas R., Novotny M., Yee-Greenbaum J., Selengut J.D., Haft D.H., et al. Genomic insights to SAR86, an abundant and uncultivated marine bacterial lineage. ISME J 2011, 10.1038/ismej.2011.189.
-
(2011)
ISME J
-
-
Dupont, C.L.1
Rusch, D.B.2
Yooseph, S.3
Lombardo, M.-J.4
Alexander Richter, R.5
Valas, R.6
Novotny, M.7
Yee-Greenbaum, J.8
Selengut, J.D.9
Haft, D.H.10
-
91
-
-
34247884459
-
A systematics for discovering the fundamental units of bacterial diversity
-
Cohan F.M., Perry E.B. A systematics for discovering the fundamental units of bacterial diversity. Curr Biol 2007, 17:R373-R386.
-
(2007)
Curr Biol
, vol.17
-
-
Cohan, F.M.1
Perry, E.B.2
-
92
-
-
0033826796
-
Elements of a theory for the mechanisms controlling abundance, diversity, and biogeochemical role of lytic bacterial viruses in aquatic systems
-
Thingstad T.F. Elements of a theory for the mechanisms controlling abundance, diversity, and biogeochemical role of lytic bacterial viruses in aquatic systems. Limnol Oceanogr 2000, 45:1320-1328.
-
(2000)
Limnol Oceanogr
, vol.45
, pp. 1320-1328
-
-
Thingstad, T.F.1
-
93
-
-
57549111277
-
The dynamic genetic repertoire of microbial communities
-
Wilmes P., Simmons S.L., Denef V.J., Banfield J.F. The dynamic genetic repertoire of microbial communities. FEMS Microbiol Rev 2009, 33:109-132.
-
(2009)
FEMS Microbiol Rev
, vol.33
, pp. 109-132
-
-
Wilmes, P.1
Simmons, S.L.2
Denef, V.J.3
Banfield, J.F.4
-
94
-
-
84857029292
-
Seasonality in ocean microbial communities
-
Giovannoni S.J., Vergin K.L. Seasonality in ocean microbial communities. Science 2012, 335:671-676.
-
(2012)
Science
, vol.335
, pp. 671-676
-
-
Giovannoni, S.J.1
Vergin, K.L.2
-
95
-
-
79955856835
-
Energy starved Candidatus Pelagibacter ubique substitutes light-mediated ATP production for endogenous carbon respiration
-
Steindler L., Schwalbach M.S., Smith D.P., Chan F., Giovannoni S.J. Energy starved Candidatus Pelagibacter ubique substitutes light-mediated ATP production for endogenous carbon respiration. PLoS ONE 2011, 6:e19725.
-
(2011)
PLoS ONE
, vol.6
-
-
Steindler, L.1
Schwalbach, M.S.2
Smith, D.P.3
Chan, F.4
Giovannoni, S.J.5
-
96
-
-
84868115137
-
The importance of metagenomic surveys to microbial ecology: or why Darwin would have been a metagenomic scientist
-
Gilbert J.A., O'Dor R., King N., Vogel T.M. The importance of metagenomic surveys to microbial ecology: or why Darwin would have been a metagenomic scientist. Microb Inform Exp 2011, 1:5.
-
(2011)
Microb Inform Exp
, vol.1
, pp. 5
-
-
Gilbert, J.A.1
O'Dor, R.2
King, N.3
Vogel, T.M.4
-
97
-
-
84868094392
-
-
Little, Brown Book Group
-
Jones S. Darwin's Island 2009, Little, Brown Book Group.
-
(2009)
Darwin's Island
-
-
Jones, S.1
-
99
-
-
43449108562
-
The minimum information about a genome sequence (MIGS) specification
-
Field D., Garrity G., Gray T., Morrison N., Selengut J., Sterk P., Tatusova T., Thomson N., Allen M.J., Angiuoli S.V., et al. The minimum information about a genome sequence (MIGS) specification. Nat Biotechnol 2008, 26:541-547.
-
(2008)
Nat Biotechnol
, vol.26
, pp. 541-547
-
-
Field, D.1
Garrity, G.2
Gray, T.3
Morrison, N.4
Selengut, J.5
Sterk, P.6
Tatusova, T.7
Thomson, N.8
Allen, M.J.9
Angiuoli, S.V.10
-
100
-
-
34548727434
-
The importance of culturing bacterioplankton in the "omics" age
-
Giovannoni S., Stingl U. The importance of culturing bacterioplankton in the "omics" age. Nat Rev Microbiol 2007, 5:820-826.
-
(2007)
Nat Rev Microbiol
, vol.5
, pp. 820-826
-
-
Giovannoni, S.1
Stingl, U.2
|