-
1
-
-
79952005915
-
Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample
-
Caporaso JG, Lauber CL, Walters WA, Berg-Lyons D, Lozupone CA, Turnbaugh PJ et al. (2011). Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample. Proc Natl Acad Sci USA 108(Suppl 1): 4516-4522.
-
(2011)
Proc Natl Acad Sci USA
, vol.108
, Issue.SUPPL. 1
, pp. 4516-4522
-
-
Caporaso, J.G.1
Lauber, C.L.2
Walters, W.A.3
Berg-Lyons, D.4
Lozupone, C.A.5
Turnbaugh, P.J.6
-
2
-
-
84855919075
-
Resource control of bacterial dynamics in the Sea
-
In Kirchman DL (ed) Wiley & Sons Inc.: NJ, USA
-
Church MJ. (2009). Resource control of bacterial dynamics in the Sea. In: Kirchman DL (ed). Microbial Ecology of the Oceans. Wiley & Sons Inc.: NJ, USA.
-
(2009)
Microbial Ecology of the Oceans
-
-
Church, M.J.1
-
5
-
-
72949091232
-
Bacterial community variation in human body habitats across space and time
-
Costello EK, Lauber CL, Hamady M, Fierer N, Gordon JI, Knight R. (2009). Bacterial community variation in human body habitats across space and time. Science 326: 1694-1697.
-
(2009)
Science
, vol.326
, pp. 1694-1697
-
-
Costello, E.K.1
Lauber, C.L.2
Hamady, M.3
Fierer, N.4
Gordon, J.I.5
Knight, R.6
-
6
-
-
0026391551
-
Hypothesis to explain high-nutrient conditions in the open sea
-
Cullen JJ. (1991). Hypothesis to explain high-nutrient conditions in the open sea. Limnology Oceanography 36: 1578-1590.
-
(1991)
Limnology Oceanography
, vol.36
, pp. 1578-1590
-
-
Cullen, J.J.1
-
7
-
-
33746061683
-
Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB
-
DOI 10.1128/AEM.03006-05
-
DeSantis TZ, Hugenholtz P, Larsen N, Rojas M, Brodie EL, Keller K et al. (2006). Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB. Appl Environ Microbiol 72: 5069-5072. (Pubitemid 44078840)
-
(2006)
Applied and Environmental Microbiology
, vol.72
, Issue.7
, pp. 5069-5072
-
-
DeSantis, T.Z.1
Hugenholtz, P.2
Larsen, N.3
Rojas, M.4
Brodie, E.L.5
Keller, K.6
Huber, T.7
Dalevi, D.8
Hu, P.9
Andersen, G.L.10
-
9
-
-
66149150877
-
Microbial community structure and its functional implications
-
Fuhrman JA. (2009). Microbial community structure and its functional implications. Nature 459: 193-199.
-
(2009)
Nature
, vol.459
, pp. 193-199
-
-
Fuhrman, J.A.1
-
10
-
-
33748353399
-
Annually reoccurring bacterial communities are predictable from ocean conditions
-
DOI 10.1073/pnas.0602399103
-
Fuhrman JA, Hewson I, Schwalbach MS, Steele JA, Brown MV, Naeem S. (2006). Annually reoccurring bacterial communities are predictable from ocean conditions. Proc Natl Acad Sci USA 103: 13104-13109. (Pubitemid 44338923)
-
(2006)
Proceedings of the National Academy of Sciences of the United States of America
, vol.103
, Issue.35
, pp. 13104-13109
-
-
Fuhrman, J.A.1
Hewson, I.2
Schwalbach, M.S.3
Steele, J.A.4
Brown, M.V.5
Naeem, S.6
-
11
-
-
45549109457
-
A latitudinal diversity gradient in planktonic marine bacteria
-
DOI 10.1073/pnas.0803070105
-
Fuhrman JA, Steele JA, Hewson I, Schwalbach MS, Brown MV, Green JL et al. (2008). A latitudinal diversity gradient in planktonic marine bacteria. Proc Natl Acad Sci USA 105: 7774-7778. (Pubitemid 351872714)
-
(2008)
Proceedings of the National Academy of Sciences of the United States of America
, vol.105
, Issue.22
, pp. 7774-7778
-
-
Fuhrman, J.A.1
Steele, J.A.2
Hewson, I.3
Schwalbach, M.S.4
Brown, M.V.5
Green, J.L.6
Brown, J.H.7
-
12
-
-
71249091315
-
The seasonal structure of microbial communities in the Western English Channel
-
Gilbert JA, Field D, Swift P, Newbold L, Oliver A, Smyth T et al. (2009). The seasonal structure of microbial communities in the Western English Channel. Environ Microbiol 11: 3132-3139.
-
(2009)
Environ Microbiol
, vol.11
, pp. 3132-3139
-
-
Gilbert, J.A.1
Field, D.2
Swift, P.3
Newbold, L.4
Oliver, A.5
Smyth, T.6
-
13
-
-
78649732106
-
The taxonomic and functional diversity of microbes at a temperate coastal site: A 'multi-omic' study of seasonal and diel temporal variation
-
Gilbert JA, Field D, Swift P, Thomas S, Cummings D, Temperton B et al. (2010). The taxonomic and functional diversity of microbes at a temperate coastal site: A 'multi-omic' study of seasonal and diel temporal variation. PLoS One 5: E15545.
-
(2010)
PLoS One
, vol.5
-
-
Gilbert, J.A.1
Field, D.2
Swift, P.3
Thomas, S.4
Cummings, D.5
Temperton, B.6
-
14
-
-
77955251092
-
Ironing out the wrinkles in the rare biosphere through improved OTU clustering
-
Huse SM, Welch DM, Morrison HG, Sogin ML. (2010). Ironing out the wrinkles in the rare biosphere through improved OTU clustering. Environ Microbiol 12: 1889-1898.
-
(2010)
Environ Microbiol
, vol.12
, pp. 1889-1898
-
-
Huse, S.M.1
Welch, D.M.2
Morrison, H.G.3
Sogin, M.L.4
-
15
-
-
0029501172
-
Biomass and biomass production of heterotrophic bacteria along 140°W in the equatorial Pacific: effect of temperature on the microbial loop
-
Kirchman DL, Rich JH, Barber RT. (1995). Biomass and biomass production of heterotrophic bacteria along 140-degrees-W in the equatorial pacific - effect of temperature on the microbial loop. Deep-Sea Res Part Ii-Topical Stud Oceanography 42: 603-619. (Pubitemid 26449906)
-
(1995)
Deep-Sea Research, Part II
, vol.42
, Issue.2-3
, pp. 603-619
-
-
Kirchman, D.L.1
Rich, J.H.2
Barber, R.T.3
-
16
-
-
64249086819
-
Validation of a hydrodynamicecosystem model simulation with time-series data collected in theWestern English Channel
-
Lewis K, Allen JI. (2009). Validation of a hydrodynamicecosystem model simulation with time-series data collected in theWestern English Channel. Mar Syst 77: 296-311.
-
(2009)
Mar Syst
, vol.77
, pp. 296-311
-
-
Lewis, K.1
Allen, J.I.2
-
17
-
-
54549106898
-
Accurate taxonomy assignments from 16S rRNA sequences produced by highly parallel pyrosequencers
-
Liu Z, DeSantis TZ, Andersen GL, Knight R. (2008). Accurate taxonomy assignments from 16S rRNA sequences produced by highly parallel pyrosequencers. Nucleic Acids Res 36: E120.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Liu, Z.1
DeSantis, T.Z.2
Andersen, G.L.3
Knight, R.4
-
18
-
-
0035175274
-
The RDP-II (Ribosomal Database Project
-
Maidak BL, Cole JR, Lilburn TG, Parker CT, Saxman PR, Farris RJ et al. (2001). The RDP-II (Ribosomal Database Project). Nucleic Acids Res 29: 173-174.
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 173-174
-
-
Maidak, B.L.1
Cole, J.R.2
Lilburn, T.G.3
Parker, C.T.4
Saxman, P.R.5
Farris, R.J.6
-
19
-
-
25144481245
-
Temporal and spatial response of bacterioplankton lineages to annual convective overturn at the Bermuda Atlantic Time-series Study site
-
Morris RM, Vergin KL, Cho JC, Rappe MS, Carlson CA, Giovannoni SJ. (2005). Temporal and spatial response of bacterioplankton lineages to annual convective overturn at the Bermuda Atlantic Time-series Study site. Limnology Oceanography 50: 1687-1696. (Pubitemid 41356448)
-
(2005)
Limnology and Oceanography
, vol.50
, Issue.5
, pp. 1687-1696
-
-
Morris, R.M.1
Vergin, K.L.2
Cho, J.-C.3
Rappe, M.S.4
Carlson, C.A.5
Giovannoni, S.J.6
-
20
-
-
0028163820
-
Influence of temperature on growth rate and competition between two psychrotolerant antarctic bacteria: Low temperature diminishes affinity for substrate uptake
-
Nedwell DB, Rutter M. (1994). Influence of temperature on growth-rate and competition between 2 psychrotolerant antarctic bacteria - low-temperature diminishes affinity for substrate uptake. Appl Environ Microbiol 60: 1984-1992. (Pubitemid 24165848)
-
(1994)
Applied and Environmental Microbiology
, vol.60
, Issue.6
, pp. 1984-1992
-
-
Nedwell, D.B.1
Rutter, M.2
-
21
-
-
0001360354
-
Currents driven by a steady uniform wind stress on the shelf seas around the British Isles
-
Pingree RD, Griffiths KD. (1980). Currents driven by a steady uniform wind stress on the shelf seas around the British Isles. Oceanol Acta 3: 227-235.
-
(1980)
Oceanol Acta
, vol.3
, pp. 227-235
-
-
Pingree, R.D.1
Griffiths, K.D.2
-
22
-
-
37549027613
-
SILVA: A comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB
-
Pruesse E, Quast C, Knittel K, Fuchs BM, Ludwig WG, Peplies J et al. (2007). SILVA: A comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB. Nucleic Acids Res 35: 7188-7196.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 7188-7196
-
-
Pruesse, E.1
Quast, C.2
Knittel, K.3
Fuchs, B.M.4
Ludwig, W.G.5
Peplies, J.6
-
23
-
-
77956304094
-
Rapidly denoising pyrosequencing amplicon reads by exploiting rank-abundance distributions
-
Reeder J, Knight R. (2010). Rapidly denoising pyrosequencing amplicon reads by exploiting rank-abundance distributions. Nat Methods 7: 668-669.
-
(2010)
Nat Methods
, vol.7
, pp. 668-669
-
-
Reeder, J.1
Knight, R.2
-
24
-
-
33947238287
-
The Sorcerer II Global Ocean Sampling expedition: Northwest Atlantic through eastern tropical Pacific
-
Rusch DB, Halpern AL, Sutton G, Heidelberg KB,Williamson S, Yooseph S et al. (2007). The Sorcerer II Global Ocean Sampling expedition: Northwest Atlantic through eastern tropical Pacific. PLoS Biol 5: E77.
-
(2007)
PLoS Biol
, vol.5
-
-
Rusch, D.B.1
Halpern, A.L.2
Sutton, G.3
Heidelberg, K.B.4
Williamson, S.5
Yooseph, S.6
-
25
-
-
33747073504
-
Microbial diversity in the deep sea and the underexplored "rare biosphere"
-
DOI 10.1073/pnas.0605127103
-
Sogin ML, Morrison HG, Huber JA, Mark Welch D, Huse SM, Neal PR et al. (2006). Microbial diversity in the deep sea and the underexplored 'rare biosphere'. Proc Natl Acad Sci USA 103: 12115-12120. (Pubitemid 44215820)
-
(2006)
Proceedings of the National Academy of Sciences of the United States of America
, vol.103
, Issue.32
, pp. 12115-12120
-
-
Sogin, M.L.1
Morrison, H.G.2
Huber, J.A.3
Welch, D.M.4
Huse, S.M.5
Neal, P.R.6
Arrieta, J.M.7
Herndl, G.J.8
-
26
-
-
10644222759
-
Long-term oceanographic and ecological research in the Western English Channel
-
Southward AJ, Langmead O, Hardman-Mountford NJ, Aiken J, Boalch GT, Dando PR et al. (2005). Long-term oceanographic and ecological research in the Western English Channel. Adv Mar Biol 47: 1-105.
-
(2005)
Adv Mar Biol
, vol.47
, pp. 1-105
-
-
Southward, A.J.1
Langmead, O.2
Hardman-Mountford, N.J.3
Aiken, J.4
Boalch, G.T.5
Dando, P.R.6
-
27
-
-
34548293679
-
Naïve Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
-
DOI 10.1128/AEM.00062-07
-
Wang Q, Garrity GM, Tiedje JM, Cole JR. (2007). Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl Environ Microbiol 73: 5261-5267. (Pubitemid 47326658)
-
(2007)
Applied and Environmental Microbiology
, vol.73
, Issue.16
, pp. 5261-5267
-
-
Wang, Q.1
Garrity, G.M.2
Tiedje, J.M.3
Cole, J.R.4
|