-
1
-
-
18744382506
-
ProtTest: Selection of best-fit models of protein evolution
-
Abascal, F., R. Zardoya, and D. Posada. 2005. ProtTest: selection of best-fit models of protein evolution. Bioinformatics 21:2104-2105.
-
(2005)
Bioinformatics
, vol.21
, pp. 2104-2105
-
-
Abascal, F.1
Zardoya, R.2
Posada, D.3
-
2
-
-
32444447726
-
Environmental forcing of phytoplankton floral composition, biomass, and primary productivity in Chesapeake Bay, USA
-
Adolf, J. E., C. L. Yeager, W. D. Miller, M. E. Mallonee, and L. W. Harding. 2006. Environmental forcing of phytoplankton floral composition, biomass, and primary productivity in Chesapeake Bay, USA. Estuar. Coast. Shelf Sci. 67:108-122.
-
(2006)
Estuar. Coast. Shelf Sci
, vol.67
, pp. 108-122
-
-
Adolf, J.E.1
Yeager, C.L.2
Miller, W.D.3
Mallonee, M.E.4
Harding, L.W.5
-
3
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul, S., T. Madden, A. Schaffer, J. Zhang, Z. Zhang, W. Miller, and D. Lipman. 1997. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25:3389-3402.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.1
Madden, T.2
Schaffer, A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.7
-
4
-
-
0025183708
-
Basic local alignment search tool
-
Altschul, S. F., W. Gish, W. Miller, E. W. Meyers, and D. J. Lipman. 1990. Basic local alignment search tool. J. Mol. Biol. 215:403-410.
-
(1990)
J. Mol. Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Meyers, E.W.4
Lipman, D.J.5
-
5
-
-
19144363310
-
PHACCS, an online tool for estimating the structure and diversity of uncultured viral communities using metagenomic information
-
Angly, F., B. Rodriguez-Brito, D. Bangor, P. McNairnie, M. Breitbart, P. Salamon, B. Felts, J. Nulton, J. Mahaffy, and F. Rohwer. 2005. PHACCS, an online tool for estimating the structure and diversity of uncultured viral communities using metagenomic information. BMC Bioinformatics 6:41.
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 41
-
-
Angly, F.1
Rodriguez-Brito, B.2
Bangor, D.3
McNairnie, P.4
Breitbart, M.5
Salamon, P.6
Felts, B.7
Nulton, J.8
Mahaffy, J.9
Rohwer, F.10
-
6
-
-
33751059692
-
The marine viromes of four oceanic regions
-
Angly, F. E., B. Felts, M. Breitbart, P. Salamon, R. A. Edwards, C. Carlson, A. M. Chan, M. Haynes, S. Kelley, H. Liu, J. M. Mahaffy, J. E. Mueller, J. Nulton, R. Olson, R. Parsons, S. Rayhawk, C. A. Suttle, and F. Rohwer. 2006. The marine viromes of four oceanic regions. PLoS Biol. 4:e368.
-
(2006)
PLoS Biol
, vol.4
-
-
Angly, F.E.1
Felts, B.2
Breitbart, M.3
Salamon, P.4
Edwards, R.A.5
Carlson, C.6
Chan, A.M.7
Haynes, M.8
Kelley, S.9
Liu, H.10
Mahaffy, J.M.11
Mueller, J.E.12
Nulton, J.13
Olson, R.14
Parsons, R.15
Rayhawk, S.16
Suttle, C.A.17
Rohwer, F.18
-
7
-
-
0001499953
-
The ecological role of water-column microbes in the sea
-
Azam, F., T. Fenchel, J. G. Field, J. S. Gray, L. A. Meyerreil, and F. Thingstad. 1983. The ecological role of water-column microbes in the sea. Mar. Ecol. Prog. Ser. 10:257-263.
-
(1983)
Mar. Ecol. Prog. Ser
, vol.10
, pp. 257-263
-
-
Azam, F.1
Fenchel, T.2
Field, J.G.3
Gray, J.S.4
Meyerreil, L.A.5
Thingstad, F.6
-
8
-
-
0037245984
-
GenBank
-
Benson, D. A., I. Karsch-Mizrachi, D. J. Lipman, J. Ostell, and D. L. Wheeler. 2003. GenBank. Nucleic Acids Res. 31:23-27.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 23-27
-
-
Benson, D.A.1
Karsch-Mizrachi, I.2
Lipman, D.J.3
Ostell, J.4
Wheeler, D.L.5
-
9
-
-
0024475207
-
High abundance of viruses found in aquatic environments
-
Bergh, O., K. Y. Borsheim, G. Bratbak, and M. Heldal. 1989. High abundance of viruses found in aquatic environments. Nature 340:467-468.
-
(1989)
Nature
, vol.340
, pp. 467-468
-
-
Bergh, O.1
Borsheim, K.Y.2
Bratbak, G.3
Heldal, M.4
-
10
-
-
33745067721
-
-
Binnewies, T. T., Y. Motro, P. F. Hallin, O. Lund, D. Dunn, T. La, D. J. Hampson, M. Bellgard, T. M. Wassenaar, and D. W. Ussery. 2006. Ten years of bacterial genome sequencing: comparative-genomics-based discoveries. Funct. Integr. Genomics 6:165-185.
-
Binnewies, T. T., Y. Motro, P. F. Hallin, O. Lund, D. Dunn, T. La, D. J. Hampson, M. Bellgard, T. M. Wassenaar, and D. W. Ussery. 2006. Ten years of bacterial genome sequencing: comparative-genomics-based discoveries. Funct. Integr. Genomics 6:165-185.
-
-
-
-
11
-
-
0036222111
-
Compositional changes in free-living bacterial communities along a salinity gradient in two temperate estuaries
-
Bouvier, T. C., and P. A. del Giorgio. 2002. Compositional changes in free-living bacterial communities along a salinity gradient in two temperate estuaries. Limnol. Oceanogr. 47:453-470.
-
(2002)
Limnol. Oceanogr
, vol.47
, pp. 453-470
-
-
Bouvier, T.C.1
del Giorgio, P.A.2
-
13
-
-
1642363900
-
Diversity and population structure of a near-shore marine-sediment viral community
-
Breitbart, M., B. Felts, S. Kelley, J. M. Mahaffy, J. Nulton, P. Salamon, and F. Rohwer. 2004. Diversity and population structure of a near-shore marine-sediment viral community. Proc. R. Soc. London Ser. B 271:565-574.
-
(2004)
Proc. R. Soc. London Ser. B
, vol.271
, pp. 565-574
-
-
Breitbart, M.1
Felts, B.2
Kelley, S.3
Mahaffy, J.M.4
Nulton, J.5
Salamon, P.6
Rohwer, F.7
-
14
-
-
0141891348
-
Metagenomic analyses of an uncultured viral community from human feces
-
Breitbart, M., I. Hewson, B. Felts, J. M. Mahaffy, J. Nulton, P. Salamon, and F. Rohwer. 2003. Metagenomic analyses of an uncultured viral community from human feces. J. Bacteriol. 185:6220-6223.
-
(2003)
J. Bacteriol
, vol.185
, pp. 6220-6223
-
-
Breitbart, M.1
Hewson, I.2
Felts, B.3
Mahaffy, J.M.4
Nulton, J.5
Salamon, P.6
Rohwer, F.7
-
15
-
-
3142570537
-
Global distribution of nearly identical phage-encoded DNA sequences
-
Breitbart, M., J. H. Miyake, and F. Rohwer. 2004. Global distribution of nearly identical phage-encoded DNA sequences. FEMS Microbiol. Lett. 236:249-256.
-
(2004)
FEMS Microbiol. Lett
, vol.236
, pp. 249-256
-
-
Breitbart, M.1
Miyake, J.H.2
Rohwer, F.3
-
16
-
-
0037195156
-
Genomic analysis of uncultured marine viral communities
-
Breitbart, M., P. Salamon, B. Andresen, J. M. Mahaffy, A. M. Segall, D. Mead, F. Azam, and F. Rohwer. 2002. Genomic analysis of uncultured marine viral communities. Proc. Natl. Acad. Sci. USA 99:14250-14255.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 14250-14255
-
-
Breitbart, M.1
Salamon, P.2
Andresen, B.3
Mahaffy, J.M.4
Segall, A.M.5
Mead, D.6
Azam, F.7
Rohwer, F.8
-
17
-
-
1942441434
-
Viral control of phytoplankton populations - a review
-
Brussaard, C. P. D. 2004. Viral control of phytoplankton populations - a review. J. Eukaryot. Microbiol. 51:125-138.
-
(2004)
J. Eukaryot. Microbiol
, vol.51
, pp. 125-138
-
-
Brussaard, C.P.D.1
-
18
-
-
0038221018
-
The universal virus database ICTVdB
-
Buchen-Osmond, C. 2003. The universal virus database ICTVdB. Comput. Sci. Eng. 5:16-25.
-
(2003)
Comput. Sci. Eng
, vol.5
, pp. 16-25
-
-
Buchen-Osmond, C.1
-
19
-
-
0004161721
-
-
Calendar, R, ed, 2nd ed, Oxford University Press, New York, NY
-
Calendar, R. (ed.). 2005. The bacteriophages, 2nd ed., vol. 1. Oxford University Press, New York, NY.
-
(2005)
The bacteriophages
, vol.1
-
-
-
20
-
-
14944358901
-
Analysis of the virus population present in equine faeces indicates the presence of hundreds of uncharacterized virus genomes
-
Cann, A. J., S. E. Fandrich, and S. Heaphy. 2005. Analysis of the virus population present in equine faeces indicates the presence of hundreds of uncharacterized virus genomes. Virus Genes 30:151-156.
-
(2005)
Virus Genes
, vol.30
, pp. 151-156
-
-
Cann, A.J.1
Fandrich, S.E.2
Heaphy, S.3
-
21
-
-
0036255283
-
Genomic sequence and evolution of marine cyanophage P60: A new insight on lytic and lysogenic phages
-
Chen, F., and J. Lu. 2002. Genomic sequence and evolution of marine cyanophage P60: a new insight on lytic and lysogenic phages. Appl. Environ. Microbiol. 68:2589-2594.
-
(2002)
Appl. Environ. Microbiol
, vol.68
, pp. 2589-2594
-
-
Chen, F.1
Lu, J.2
-
22
-
-
0035143656
-
Application of digital image analysis and flow cytometry to enumerate marine viruses stained with SYBR gold
-
Chen, F., J. R. Lu, B. J. Binder, Y. C. Liu, and R. E. Hodson. 2001. Application of digital image analysis and flow cytometry to enumerate marine viruses stained with SYBR gold. Appl. Environ. Microbiol. 67:539-545.
-
(2001)
Appl. Environ. Microbiol
, vol.67
, pp. 539-545
-
-
Chen, F.1
Lu, J.R.2
Binder, B.J.3
Liu, Y.C.4
Hodson, R.E.5
-
23
-
-
0030014666
-
Evolutionary relationships among large double-stranded DNA viruses that infect microalgae and other organisms as inferred from DNA polymerase genes
-
Chen, F., and C. A. Suttle. 1996. Evolutionary relationships among large double-stranded DNA viruses that infect microalgae and other organisms as inferred from DNA polymerase genes. Virology 219:170-178.
-
(1996)
Virology
, vol.219
, pp. 170-178
-
-
Chen, F.1
Suttle, C.A.2
-
24
-
-
33644951496
-
Diverse and unique picocyanobacteria in Chesapeake Bay, revealed by 16S-23S rRNA internal transcribed spacer sequences
-
Chen, F., K. Wang, J. J. Kan, M. T. Suzuki, and K. E. Wommack. 2006. Diverse and unique picocyanobacteria in Chesapeake Bay, revealed by 16S-23S rRNA internal transcribed spacer sequences. Appl. Environ. Microbiol. 72:2239-2243.
-
(2006)
Appl. Environ. Microbiol
, vol.72
, pp. 2239-2243
-
-
Chen, F.1
Wang, K.2
Kan, J.J.3
Suzuki, M.T.4
Wommack, K.E.5
-
25
-
-
0032976388
-
Phylogenetic analysis of particle-attached and free-living bacterial communities in the Columbia River, its estuary, and the adjacent coastal ocean
-
Crump, B. C., E. V. Armbrust, and J. A. Baross. 1999. Phylogenetic analysis of particle-attached and free-living bacterial communities in the Columbia River, its estuary, and the adjacent coastal ocean. Appl. Environ. Microbiol. 65:3192-3204.
-
(1999)
Appl. Environ. Microbiol
, vol.65
, pp. 3192-3204
-
-
Crump, B.C.1
Armbrust, E.V.2
Baross, J.A.3
-
26
-
-
7444262933
-
Adsorption and precipitation of iron from seawater on a marine bacteriophage (PWH3A-P1)
-
Daughney, C. J., X. Chatellier, A. Chan, P. Kenward, D. Fortin, C. A. Suttle, and D. A. Fowle. 2004. Adsorption and precipitation of iron from seawater on a marine bacteriophage (PWH3A-P1). Mar. Chem. 91:101-115.
-
(2004)
Mar. Chem
, vol.91
, pp. 101-115
-
-
Daughney, C.J.1
Chatellier, X.2
Chan, A.3
Kenward, P.4
Fortin, D.5
Suttle, C.A.6
Fowle, D.A.7
-
28
-
-
0031955518
-
Base-calling of automated sequencer traces using Phred. I. Accuracy assessment
-
Ewing, B., L. Hillier, M. C. Wendl, and P. Green. 1998. Base-calling of automated sequencer traces using Phred. I. Accuracy assessment. Genome Res. 8:175-185.
-
(1998)
Genome Res
, vol.8
, pp. 175-185
-
-
Ewing, B.1
Hillier, L.2
Wendl, M.C.3
Green, P.4
-
29
-
-
0032876852
-
Prokaryotic genome size and SSU rDNA copy number: Estimation of microbial relative abundance from a mixed population
-
Fogel, G. B., C. R. Collins, J. Li, and C. F. Brunk. 1999. Prokaryotic genome size and SSU rDNA copy number: estimation of microbial relative abundance from a mixed population. Microb. Ecol. 38:93-113.
-
(1999)
Microb. Ecol
, vol.38
, pp. 93-113
-
-
Fogel, G.B.1
Collins, C.R.2
Li, J.3
Brunk, C.F.4
-
30
-
-
0033542481
-
Marine viruses and their biogeochemical and ecological effects
-
Fuhrman, J. A. 1999. Marine viruses and their biogeochemical and ecological effects. Nature 399:541-548.
-
(1999)
Nature
, vol.399
, pp. 541-548
-
-
Fuhrman, J.A.1
-
32
-
-
0033514996
-
Evolutionary relationships among diverse bacteriophages and prophages: All the world's a phage
-
Hendrix, R. W., M. C. M. Smith, R. N. Burns, M. E. Ford, and G. F. Hatfull. 1999. Evolutionary relationships among diverse bacteriophages and prophages: all the world's a phage. Proc. Natl. Acad. Sci. USA 96:2192-2197.
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 2192-2197
-
-
Hendrix, R.W.1
Smith, M.C.M.2
Burns, R.N.3
Ford, M.E.4
Hatfull, G.F.5
-
33
-
-
33645891993
-
Viral and bacterial assemblage covariance in oligotrophic waters of the West Florida Shelf (Gulf of Mexico)
-
Hewson, I., D. M. Winget, K. E. Williamson, J. A. Fuhrman, and K. E. Wommack. 2006. Viral and bacterial assemblage covariance in oligotrophic waters of the West Florida Shelf (Gulf of Mexico). J. Mar. Biol. Assoc. U. K. 86:591-603.
-
(2006)
J. Mar. Biol. Assoc. U. K
, vol.86
, pp. 591-603
-
-
Hewson, I.1
Winget, D.M.2
Williamson, K.E.3
Fuhrman, J.A.4
Wommack, K.E.5
-
34
-
-
33749460423
-
Bacterioplankton community in Chesapeake Bay: Predictable or random assemblages
-
Kan, J. J., B. C. Crump, K. Wang, and F. Chen. 2006. Bacterioplankton community in Chesapeake Bay: predictable or random assemblages. Limnol. Oceanogr. 51:2157-2169.
-
(2006)
Limnol. Oceanogr
, vol.51
, pp. 2157-2169
-
-
Kan, J.J.1
Crump, B.C.2
Wang, K.3
Chen, F.4
-
35
-
-
0035945618
-
Archaeal dominance in the mesopelagic zone of the Pacific Ocean
-
Karner, M. B., E. F. DeLong, and D. M. Karl. 2001. Archaeal dominance in the mesopelagic zone of the Pacific Ocean. Nature 409:507-510.
-
(2001)
Nature
, vol.409
, pp. 507-510
-
-
Karner, M.B.1
DeLong, E.F.2
Karl, D.M.3
-
36
-
-
3242810318
-
MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment
-
Kumar, S., K. Tamura, and M. Nei. 2004. MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief. Bioinformat. 5:150-163.
-
(2004)
Brief. Bioinformat
, vol.5
, pp. 150-163
-
-
Kumar, S.1
Tamura, K.2
Nei, M.3
-
37
-
-
27744480467
-
Photosynthesis genes in marine viruses yield proteins during host infection
-
Lindell, D., J. D. Jaffe, Z. I. Johnson, G. M. Church, and S. W. Chisholm. 2005. Photosynthesis genes in marine viruses yield proteins during host infection. Nature 438:86-89.
-
(2005)
Nature
, vol.438
, pp. 86-89
-
-
Lindell, D.1
Jaffe, J.D.2
Johnson, Z.I.3
Church, G.M.4
Chisholm, S.W.5
-
38
-
-
0037385295
-
Phages of the marine cyanobacterial picophytoplankton
-
Mann, N. H. 2003. Phages of the marine cyanobacterial picophytoplankton. FEMS Microbiol. Rev. 27:17-34.
-
(2003)
FEMS Microbiol. Rev
, vol.27
, pp. 17-34
-
-
Mann, N.H.1
-
39
-
-
0041736065
-
Marine ecosystems: Bacterial photosynthesis genes in a virus
-
Mann, N. H., A. Cook, A. Millard, S. Bailey, and M. Clokie. 2003. Marine ecosystems: bacterial photosynthesis genes in a virus. Nature 424:741.
-
(2003)
Nature
, vol.424
, pp. 741
-
-
Mann, N.H.1
Cook, A.2
Millard, A.3
Bailey, S.4
Clokie, M.5
-
40
-
-
0037203886
-
Plankton blooms: Lysogeny in marine Synechococcus
-
McDaniel, L., L. A. Houchin, S. J. Williamson, and J. H. Paul. 2002. Plankton blooms: lysogeny in marine Synechococcus. Nature 415:496.
-
(2002)
Nature
, vol.415
, pp. 496
-
-
McDaniel, L.1
Houchin, L.A.2
Williamson, S.J.3
Paul, J.H.4
-
41
-
-
0037087872
-
Regeneration of dissolved organic matter by viral lysis in marine microbial communities
-
Middelboe, M., and P. G. Lyck. 2002. Regeneration of dissolved organic matter by viral lysis in marine microbial communities. Aquat. Microb. Ecol. 27:187-194.
-
(2002)
Aquat. Microb. Ecol
, vol.27
, pp. 187-194
-
-
Middelboe, M.1
Lyck, P.G.2
-
42
-
-
0141788404
-
Virus-induced transfer of organic carbon between marine bacteria in a model community
-
Middelboe, M., L. Riemann, G. F. Steward, V. Hansen, and O. Nybroe. 2003. Virus-induced transfer of organic carbon between marine bacteria in a model community. Aquat. Microb. Ecol. 33:1-10.
-
(2003)
Aquat. Microb. Ecol
, vol.33
, pp. 1-10
-
-
Middelboe, M.1
Riemann, L.2
Steward, G.F.3
Hansen, V.4
Nybroe, O.5
-
43
-
-
3342929288
-
Genetic organization of the psbAD region in phages infecting marine Synechococcus strains
-
Millard, A., M. R. J. Clokie, D. A. Shub, and N. H. Mann. 2004. Genetic organization of the psbAD region in phages infecting marine Synechococcus strains. Proc. Natl. Acad. Sci. USA 101:11007-11012.
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 11007-11012
-
-
Millard, A.1
Clokie, M.R.J.2
Shub, D.A.3
Mann, N.H.4
-
44
-
-
0034888693
-
Environmental bacteriophage-host interactions: Factors contributing to natural transduction
-
Miller, R. V. 2001. Environmental bacteriophage-host interactions: factors contributing to natural transduction. Antonie Leeuwenhoek 79:141-147.
-
(2001)
Antonie Leeuwenhoek
, vol.79
, pp. 141-147
-
-
Miller, R.V.1
-
45
-
-
20144389217
-
-
Muhling, M., N. J. Fuller, A. Millard, P. J. Somerfield, D. Marie, W. H. Wilson, D. J. Scanlan, A. F. Post, I. Joint, and N. H. Mann. 2005. Genetic diversity of marine Synechococcus and co-occurring cyanophage communities: evidence for viral control of phytoplankton. Environ. Microbiol. 7:499-508.
-
Muhling, M., N. J. Fuller, A. Millard, P. J. Somerfield, D. Marie, W. H. Wilson, D. J. Scanlan, A. F. Post, I. Joint, and N. H. Mann. 2005. Genetic diversity of marine Synechococcus and co-occurring cyanophage communities: evidence for viral control of phytoplankton. Environ. Microbiol. 7:499-508.
-
-
-
-
46
-
-
0035166979
-
The Comprehensive Microbial Resource
-
Peterson, J. D., L. A. Umayam, T. Dickinson, E. K. Hickey, and O. White. 2001. The Comprehensive Microbial Resource. Nucleic Acids Res. 29:123-125.
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 123-125
-
-
Peterson, J.D.1
Umayam, L.A.2
Dickinson, T.3
Hickey, E.K.4
White, O.5
-
47
-
-
4944245704
-
Viral release of iron and its bioavailability to marine plankton
-
Poorvin, L., J. M. Rinta-Kanto, D. A. Hutchins, and S. W. Wilhelm. 2004. Viral release of iron and its bioavailability to marine plankton. Limnol. Oceanogr. 49:1734-1741.
-
(2004)
Limnol. Oceanogr
, vol.49
, pp. 1734-1741
-
-
Poorvin, L.1
Rinta-Kanto, J.M.2
Hutchins, D.A.3
Wilhelm, S.W.4
-
48
-
-
32044436032
-
Evidence of host-virus co-evolution in tetranucleotide usage patterns of bacteriophages and eukaryotic viruses
-
Pride, D. T., T. M. Wassenaar, C. Ghose, and M. J. Blaser. 2006. Evidence of host-virus co-evolution in tetranucleotide usage patterns of bacteriophages and eukaryotic viruses. BMC Genomics 7:8.
-
(2006)
BMC Genomics
, vol.7
, pp. 8
-
-
Pride, D.T.1
Wassenaar, T.M.2
Ghose, C.3
Blaser, M.J.4
-
49
-
-
0025198355
-
Viral mortality of marine-bacteria and cyanobacteria
-
Proctor, L. M., and J. A. Fuhrman. 1990. Viral mortality of marine-bacteria and cyanobacteria. Nature 343:60-62.
-
(1990)
Nature
, vol.343
, pp. 60-62
-
-
Proctor, L.M.1
Fuhrman, J.A.2
-
51
-
-
0027133165
-
Functions of the gene products of Escherichia coli
-
Riley, M. 1993. Functions of the gene products of Escherichia coli. Microbiol. Rev. 57:862-952.
-
(1993)
Microbiol. Rev
, vol.57
, pp. 862-952
-
-
Riley, M.1
-
52
-
-
0036330981
-
The phage proteomic tree: A genome-based taxonomy for phage
-
Rohwer, F., and R. Edwards. 2002. The phage proteomic tree: a genome-based taxonomy for phage. J. Bacteriol. 184:4529-4535.
-
(2002)
J. Bacteriol
, vol.184
, pp. 4529-4535
-
-
Rohwer, F.1
Edwards, R.2
-
53
-
-
0034111671
-
The complete genomic sequence of the marine phage Roseophage SIO1 shares homology with nonmarine phages
-
Rohwer, F., A. Segall, G. Steward, V. Seguritan, M. Breitbart, F. Wolven, and F. Azam. 2000. The complete genomic sequence of the marine phage Roseophage SIO1 shares homology with nonmarine phages. Limnol. Oceanogr. 45:408-418.
-
(2000)
Limnol. Oceanogr
, vol.45
, pp. 408-418
-
-
Rohwer, F.1
Segall, A.2
Steward, G.3
Seguritan, V.4
Breitbart, M.5
Wolven, F.6
Azam, F.7
-
54
-
-
0034947811
-
Production of shotgun libraries using random amplification
-
Rohwer, F., V. Seguritan, D. H. Choi, A. M. Segall, and F. Azam. 2001. Production of shotgun libraries using random amplification. BioTechniques 31:108-119.
-
(2001)
BioTechniques
, vol.31
, pp. 108-119
-
-
Rohwer, F.1
Seguritan, V.2
Choi, D.H.3
Segall, A.M.4
Azam, F.5
-
56
-
-
12244252269
-
Nearly identical bacteriophage structural gene sequences are widely distributed in both marine and freshwater environments
-
Short, C. M., and C. A. Suttle. 2005. Nearly identical bacteriophage structural gene sequences are widely distributed in both marine and freshwater environments. Appl. Environ. Microbiol. 71:480-486.
-
(2005)
Appl. Environ. Microbiol
, vol.71
, pp. 480-486
-
-
Short, C.M.1
Suttle, C.A.2
-
57
-
-
0036197501
-
Sequence analysis of marine virus communities reveals that groups of related algal viruses are widely distributed in nature
-
Short, S. M., and C. A. Suttle. 2002. Sequence analysis of marine virus communities reveals that groups of related algal viruses are widely distributed in nature. Appl. Environ. Microbiol. 68:1290-1296.
-
(2002)
Appl. Environ. Microbiol
, vol.68
, pp. 1290-1296
-
-
Short, S.M.1
Suttle, C.A.2
-
58
-
-
21344461027
-
Three Prochlorococcus cyanophage genomes: Signature features and ecological interpretations
-
Sullivan, M. B., M. L. Coleman, P. Weigele, F. Rohwer, and S. W. Chisholm. 2005. Three Prochlorococcus cyanophage genomes: signature features and ecological interpretations. PLoS Biol. 3:e144.
-
(2005)
PLoS Biol
, vol.3
-
-
Sullivan, M.B.1
Coleman, M.L.2
Weigele, P.3
Rohwer, F.4
Chisholm, S.W.5
-
59
-
-
33747369803
-
Prevalence and evolution of core photosystem II genes in marine cyanobacterial viruses and their hosts
-
Sullivan, M. B., D. Lindell, J. A. Lee, L. R. Thompson, J. P. Bielawski, and S. W. Chisholm. 2006. Prevalence and evolution of core photosystem II genes in marine cyanobacterial viruses and their hosts. PLoS Biol. 4:e234.
-
(2006)
PLoS Biol
, vol.4
-
-
Sullivan, M.B.1
Lindell, D.2
Lee, J.A.3
Thompson, L.R.4
Bielawski, J.P.5
Chisholm, S.W.6
-
60
-
-
0041375471
-
Cyanophages infecting the oceanic cyanobacterium Prochlorococcus
-
Sullivan, M. B., J. B. Waterbury, and S. W. Chisholm. 2003. Cyanophages infecting the oceanic cyanobacterium Prochlorococcus. Nature 424:1047-1051.
-
(2003)
Nature
, vol.424
, pp. 1047-1051
-
-
Sullivan, M.B.1
Waterbury, J.B.2
Chisholm, S.W.3
-
61
-
-
25144506135
-
Viruses in the sea
-
Suttle, C. A. 2005. Viruses in the sea. Nature 437:356-361.
-
(2005)
Nature
, vol.437
, pp. 356-361
-
-
Suttle, C.A.1
-
62
-
-
0025197488
-
Infection of phytoplankton by viruses and reduction of primary productivity
-
Suttle, C. A., A. M. Chan, and M. T. Cottrell. 1990. Infection of phytoplankton by viruses and reduction of primary productivity. Nature 347:467-469.
-
(1990)
Nature
, vol.347
, pp. 467-469
-
-
Suttle, C.A.1
Chan, A.M.2
Cottrell, M.T.3
-
63
-
-
0033826796
-
Elements of a theory for the mechanisms controlling abundance, diversity, and biogeochemical role of lytic bacterial viruses in aquatic systems
-
Thingstad, T. F. 2000. Elements of a theory for the mechanisms controlling abundance, diversity, and biogeochemical role of lytic bacterial viruses in aquatic systems. Limnol. Oceanogr. 45:1320-1328.
-
(2000)
Limnol. Oceanogr
, vol.45
, pp. 1320-1328
-
-
Thingstad, T.F.1
-
64
-
-
1542377296
-
Community structure and metabolism through reconstruction of microbial genomes from the environment
-
Tyson, G. W., J. Chapman, P. Hugenholtz, E. E. Allen, R. J. Ram, P. M. Richardson, V. V. Solovyev, E. M. Rubin, D. S. Rokhsar, and J. F. Banfiel. 2004. Community structure and metabolism through reconstruction of microbial genomes from the environment. Nature 428:37-43.
-
(2004)
Nature
, vol.428
, pp. 37-43
-
-
Tyson, G.W.1
Chapman, J.2
Hugenholtz, P.3
Allen, E.E.4
Ram, R.J.5
Richardson, P.M.6
Solovyev, V.V.7
Rubin, E.M.8
Rokhsar, D.S.9
Banfiel, J.F.10
-
65
-
-
11144354360
-
-
Venter, J. C., K. Remington, J. F. Heidelberg, A. L. Halpern, D. Rusch, J. A. Eisen, D. Wu, I. Paulsen, K. E. Nelson, W. Nelson, D. E. Fouts, S. Levy, A. H. Knap, M. W. Lomas, K. Nealson, O. White, J. Peterson, J. Hoffman, R. Parsons, H. Baden-Tillson, C. Pfannkoch, Y.-H. Rogers, and H. O. Smith. 2004. Environmental genome shotgun sequencing of the Sargasso Sea. Science 304:66-74.
-
Venter, J. C., K. Remington, J. F. Heidelberg, A. L. Halpern, D. Rusch, J. A. Eisen, D. Wu, I. Paulsen, K. E. Nelson, W. Nelson, D. E. Fouts, S. Levy, A. H. Knap, M. W. Lomas, K. Nealson, O. White, J. Peterson, J. Hoffman, R. Parsons, H. Baden-Tillson, C. Pfannkoch, Y.-H. Rogers, and H. O. Smith. 2004. Environmental genome shotgun sequencing of the Sargasso Sea. Science 304:66-74.
-
-
-
-
66
-
-
4143150674
-
Genetic diversity and population dynamics of cyanophage communities in the Chesapeake Bay
-
Wang, K., and F. Chen. 2004. Genetic diversity and population dynamics of cyanophage communities in the Chesapeake Bay. Aquat. Microb. Ecol. 34:105-116.
-
(2004)
Aquat. Microb. Ecol
, vol.34
, pp. 105-116
-
-
Wang, K.1
Chen, F.2
-
67
-
-
1942486000
-
Ecology of prokaryotic viruses
-
Weinbauer, M. G. 2004. Ecology of prokaryotic viruses. FEMS Microbiol. Rev. 28:127-181.
-
(2004)
FEMS Microbiol. Rev
, vol.28
, pp. 127-181
-
-
Weinbauer, M.G.1
-
68
-
-
0033957466
-
Database resources of the National Center for Biotechnology Information
-
Wheeler, D. L., C. Chappey, A. E. Lash, D. D. Leipe, T. L. Madden, G. D. Schuler, T. A. Tatusova, and B. A. Rapp. 2000. Database resources of the National Center for Biotechnology Information. Nucleic Acids Res. 28:10-14.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 10-14
-
-
Wheeler, D.L.1
Chappey, C.2
Lash, A.E.3
Leipe, D.D.4
Madden, T.L.5
Schuler, G.D.6
Tatusova, T.A.7
Rapp, B.A.8
-
69
-
-
0032858844
-
Viruses and nutrient cycles in the sea - viruses play critical roles in the structure and function of aquatic food webs
-
Wilhelm, S. W., and C. A. Suttle. 1999. Viruses and nutrient cycles in the sea - viruses play critical roles in the structure and function of aquatic food webs. Bioscience 49:781-788.
-
(1999)
Bioscience
, vol.49
, pp. 781-788
-
-
Wilhelm, S.W.1
Suttle, C.A.2
-
70
-
-
0036727216
-
Seasonal variation in lysogeny as depicted by prophage induction in Tampa Bay, Florida
-
Williamson, S. J., L. A. Houchin, L. McDaniel, and J. H. Paul. 2002. Seasonal variation in lysogeny as depicted by prophage induction in Tampa Bay, Florida. Appl. Environ. Microbiol. 68:4307-4314.
-
(2002)
Appl. Environ. Microbiol
, vol.68
, pp. 4307-4314
-
-
Williamson, S.J.1
Houchin, L.A.2
McDaniel, L.3
Paul, J.H.4
-
71
-
-
23644461765
-
Complete genome sequence and lytic phase transcription profile of a Coccolithovirus
-
Wilson, W. H., D. C. Schroeder, M. J. Allen, M. T. G. Holden, J. Parkhill, B. G. Barrell, C. Churcher, N. Harnlin, K. Mungall, H. Norbertczak, M. A. Quail, C. Price, E. Rabbinowitsch, D. Walker, M. Craigon, D. Roy, and P. Ghazal. 2005. Complete genome sequence and lytic phase transcription profile of a Coccolithovirus. Science 309:1090-1092.
-
(2005)
Science
, vol.309
, pp. 1090-1092
-
-
Wilson, W.H.1
Schroeder, D.C.2
Allen, M.J.3
Holden, M.T.G.4
Parkhill, J.5
Barrell, B.G.6
Churcher, C.7
Harnlin, N.8
Mungall, K.9
Norbertczak, H.10
Quail, M.A.11
Price, C.12
Rabbinowitsch, E.13
Walker, D.14
Craigon, M.15
Roy, D.16
Ghazal, P.17
-
72
-
-
0026616315
-
Distribution of viruses in the Chesapeake Bay
-
Wommack, K., R. Hill, M. Kessel, E. Russek-Cohen, and R. Colwell. 1992. Distribution of viruses in the Chesapeake Bay. Appl. Environ. Microbiol. 58:2965-2970.
-
(1992)
Appl. Environ. Microbiol
, vol.58
, pp. 2965-2970
-
-
Wommack, K.1
Hill, R.2
Kessel, M.3
Russek-Cohen, E.4
Colwell, R.5
-
73
-
-
0034053843
-
Virioplankton: Viruses in aquatic ecosystems
-
Wommack, K. E., and R. R. Colwell. 2000. Virioplankton: viruses in aquatic ecosystems. Microbiol. Mol. Biol. Rev. 64:69-114.
-
(2000)
Microbiol. Mol. Biol. Rev
, vol.64
, pp. 69-114
-
-
Wommack, K.E.1
Colwell, R.R.2
-
74
-
-
0032959665
-
Population dynamics of Chesapeake Bay virioplankton: Total-community analysis by pulsed-field gel electrophoresis
-
Wommack, K. E., J. Ravel, R. T. Hill, J. Chun, and R. R. Colwell. 1999. Population dynamics of Chesapeake Bay virioplankton: total-community analysis by pulsed-field gel electrophoresis. Appl. Environ. Microbiol. 65:231-240.
-
(1999)
Appl. Environ. Microbiol
, vol.65
, pp. 231-240
-
-
Wommack, K.E.1
Ravel, J.2
Hill, R.T.3
Chun, J.4
Colwell, R.R.5
-
75
-
-
0032931852
-
Hybridization analysis of Chesapeake Bay virioplankton
-
Wommack, K. E., J. Ravel, R. T. Hill, and R. R. Colwell. 1999. Hybridization analysis of Chesapeake Bay virioplankton. Appl. Environ. Microbiol. 65:241-250.
-
(1999)
Appl. Environ. Microbiol
, vol.65
, pp. 241-250
-
-
Wommack, K.E.1
Ravel, J.2
Hill, R.T.3
Colwell, R.R.4
-
76
-
-
31144459030
-
RNA viral community in human feces: Prevalence of plant pathogenic viruses
-
Zhang, T., M. Breitbart, W. H. Lee, J. Q. Run, C. L. Wei, S. W. L. Soh, M. L. Hibberd, E. T. Liu, F. Rohwer, and Y. J. Ruan. 2006. RNA viral community in human feces: prevalence of plant pathogenic viruses. PLoS Biol. 4:108-118.
-
(2006)
PLoS Biol
, vol.4
, pp. 108-118
-
-
Zhang, T.1
Breitbart, M.2
Lee, W.H.3
Run, J.Q.4
Wei, C.L.5
Soh, S.W.L.6
Hibberd, M.L.7
Liu, E.T.8
Rohwer, F.9
Ruan, Y.J.10
-
77
-
-
0036211846
-
Phylogenetic diversity of marine cyanophage isolates and natural virus communities as revealed by sequences of viral capsid assembly protein gene g20
-
Zhong, Y., F. Chen, S. W. Wilhelm, L. Poorvin, and R. E. Hodson. 2002. Phylogenetic diversity of marine cyanophage isolates and natural virus communities as revealed by sequences of viral capsid assembly protein gene g20. Appl. Environ. Microbiol. 68:1576-1584.
-
(2002)
Appl. Environ. Microbiol
, vol.68
, pp. 1576-1584
-
-
Zhong, Y.1
Chen, F.2
Wilhelm, S.W.3
Poorvin, L.4
Hodson, R.E.5
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