Genomic analysis of uncultured marine viral communities

Proceedings of the National Academy of Sciences of the United States of America

Volumn 99, Issue 22, 2002, Pages 14250-14255

  Breitbart, Mya ^a   Salamon, Peter ^b   Andresen, Bjarne ^b,c   Mahaffy, Joseph M ^b   Segall, Anca M ^a   Mead, David ^d   Azam, Farooq ^e   Rohwer, Forest ^a  

^a SAN DIEGO STATE UNIVERSITY   (United States)

^b SAN DIEGO STATE UNIVERSITY   (United States)

^c UNIVERSITY OF COPENHAGEN   (Denmark)

^d Lucigen   (United States)

^e UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CONTIG; DOUBLE STRANDED DNA;

ARTICLE; BACTERIOPHAGE; GENETIC VARIABILITY; GENOMICS; MARINE ENVIRONMENT; MATHEMATICAL MODEL; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; SEQUENCE ANALYSIS; UNINDEXED SEQUENCE; VIRAL GENETICS;

BACTERIOPHAGES; BASE SEQUENCE; DNA VIRUSES; DNA, VIRAL; MODELS, GENETIC; MOLECULAR SEQUENCE DATA; PHYCODNAVIRIDAE; SEAWATER; VARIATION (GENETICS);

ALGAE; CAUDOVIRALES;

EID: 0037195156     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.202488399     Document Type: Article

References (23)

1. Fuhrman, J. A. (1999) Nature 399, 541-548.
2. Wommack, K. E. & Colwell, R. R. (2000) Microbiol. Mol. Biol. Rev. 64, 69-114.
3. Bratbak, G., Heldal, M., Thingstad, T. F. & Tuomi, P. (1996) FEMS Microbiol. Ecol. 19, 263-269.
4. Paul, J. H. (1999) J. Mol. Microbiol. Biotechnol. 1, 45-50.
5. Fuller, N. J., Wilson, W. H., Joint, I. R. & Mann, N. H. (1998) Appl. Environ. Microbiol. 64, 2051-2060.
6. Hambly, E., Tetart, F., Desplats, C., Wilson, W. H., Krisch, H. M. & Mann, N. H. (2001) Proc. Natl. Acad. Sci. USA 98, 11411-11416.
7. Rohwer, F., Segall, A., Steward, G., Seguritan, V., Breitbart, M., Wolven, F. & Azam, F. (2000) Limnol. Oceanogr. 42, 408-418.
8. Fuhrman, J. A. & Campbell, L. (1998) Nature 393, 410-411.
9. Rohwer, F. & Edwards, R. (2002) J. Bacteriol. 184, 4529-4535.
10. Noble, R. T. & Fuhrman, J. A. (1998) Aquatic Microbial Ecol. 14, 113-118.
11. Steward, G. F., Montiel, J. L. & Azam, F. (2000) Limnol. Oceanogr. 45, 1697-1706.
12. Sambrook, J., Fritsch, E. F. & Maniatis, T. (1989) Molecular Cloning: A Laboratory Manual (Cold Spring Harbor Lab. Press, Plainview, NY).
13. Rohwer, F., Seguritan, V., Choi, D. H., Segall, A. M. & Azam, F. (2001) BioTechniques 31, 108-118.
14. Altschul, S. F., Madden, T. L., Schäffer, A. A., Zhang, J., Zhang, Z., Miller, W. & Lipman, D. J. (1997) Nucleic Acids Res. 25, 3389-3402.
15. Altschul, S. F., Gish, W., Miller, W., Myers, E. W. & Lipman, D. J. (1990) J. Mol. Biol. 215, 403-410.
16. Murphy, F. A., Fauquet, C. M., Bishop, D. H. L., Ghabrial, S. A., Jarvis, A. W., Martelli, G. P., Mayo, M. A. & Summers, M. D. (1995) Virus Taxonomy: Sixth Report of the International Committee on the Taxonomy of Viruses (Springer, New York), Vol. 10, pp. 586.
17. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997) Nucleic Acids Res. 24, 4876-4882.
18. Chen, F. & Lu, J. (2002) Appl. Environ. Microbiol. 68, 2589-2594.
19. Feller, W. (1966) An Introduction to Probability Theory and Its Applications (Wiley, New York).
20. Ulrich, W. (2001) Pol. J. Ecol. 49, 145-157.
21. Chao, A. (1984) Scand. J. Stat. 11, 783-791.
22. Hughes, J. B., Hellmann, J. J., Richetts, T. H. & Bohannan, B. J. M. (2001) Appl. Environ. Microbiol. 67, 4399-4406.
23. Shannon, C. E. & Weaver, W. (1963) The Mathematical Theory of Communication (Univ. of Illinois Press, Urbana).