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Volumn 3, Issue 12, 2007, Pages 2515-2528

Patterns and implications of gene gain and loss in the evolution of Prochlorococcus

Author keywords

[No Author keywords available]

Indexed keywords

PROTEOME; BACTERIAL RNA; RNA 16S;

EID: 37749041470     PISSN: 15537390     EISSN: 15537404     Source Type: Journal    
DOI: 10.1371/journal.pgen.0030231     Document Type: Article
Times cited : (421)

References (72)
  • 2
    • 0002523795 scopus 로고
    • Biological and ecological characterization of the marine unicellular bacterium Synechococcus
    • Waterbury JB, Watson SW, Valois FW, Franks DG (1986) Biological and ecological characterization of the marine unicellular bacterium Synechococcus. Can Bull Fish Aquat Sci 214: 71-120.
    • (1986) Can Bull Fish Aquat Sci , vol.214 , pp. 71-120
    • Waterbury, J.B.1    Watson, S.W.2    Valois, F.W.3    Franks, D.G.4
  • 3
    • 0033009854 scopus 로고    scopus 로고
    • Prochlorococcus, a marine photosynthetic prokaryote of global significance
    • Partensky F, Hess WR, Vaulot D (1999) Prochlorococcus, a marine photosynthetic prokaryote of global significance. Microbiol Mol Biol Rev 63: 106-127.
    • (1999) Microbiol Mol Biol Rev , vol.63 , pp. 106-127
    • Partensky, F.1    Hess, W.R.2    Vaulot, D.3
  • 4
    • 0032482462 scopus 로고    scopus 로고
    • Physiology and molecular phylogeny of coexisting Prochlorococcus ecotypes
    • Moore LR, Rocap G, Chisholm SW (1998) Physiology and molecular phylogeny of coexisting Prochlorococcus ecotypes. Nature 393: 464-467.
    • (1998) Nature , vol.393 , pp. 464-467
    • Moore, L.R.1    Rocap, G.2    Chisholm, S.W.3
  • 5
    • 0033012306 scopus 로고    scopus 로고
    • Niche-partitioning of Prochlorococcus populations in a stratified water column in the eastern North Atlantic Ocean
    • West NJ, Scanlan DJ (1999) Niche-partitioning of Prochlorococcus populations in a stratified water column in the eastern North Atlantic Ocean. Appl Environ Microbiol 65: 2585-2591.
    • (1999) Appl Environ Microbiol , vol.65 , pp. 2585-2591
    • West, N.J.1    Scanlan, D.J.2
  • 6
    • 0031889272 scopus 로고    scopus 로고
    • Rapid diversification of marine picophytoplankton with dissimilar light-harvesting structures inferred from sequences of Prochlorococcus and Synechococcus (Cyanobacteria)
    • Urbach E, Scanlan DJ, Distel DL, Waterbury JB, Chisholm SW (1998) Rapid diversification of marine picophytoplankton with dissimilar light-harvesting structures inferred from sequences of Prochlorococcus and Synechococcus (Cyanobacteria). J Mol Evol 46: 188-201.
    • (1998) J Mol Evol , vol.46 , pp. 188-201
    • Urbach, E.1    Scanlan, D.J.2    Distel, D.L.3    Waterbury, J.B.4    Chisholm, S.W.5
  • 7
    • 0042878464 scopus 로고    scopus 로고
    • Genome divergence in two Prochlorococcus ecotypes reflects oceanic niche differentiation
    • Rocap G, Larimer FW, Lamerdin J, Malfatti S, Chain P, et al. (2003) Genome divergence in two Prochlorococcus ecotypes reflects oceanic niche differentiation. Nature 424: 1042-1047.
    • (2003) Nature , vol.424 , pp. 1042-1047
    • Rocap, G.1    Larimer, F.W.2    Lamerdin, J.3    Malfatti, S.4    Chain, P.5
  • 8
    • 0041386044 scopus 로고    scopus 로고
    • Genome sequence of the cyanobacterium Prochlorococcus marinus SS120, a nearly minimal oxyphototrophic genome
    • Dufresne A, Salanoubat M, Partensky F, Artiguenave F, Axmann IM, et al. (2003) Genome sequence of the cyanobacterium Prochlorococcus marinus SS120, a nearly minimal oxyphototrophic genome. Proc Natl Acad Sci U S A 100: 10020-10025.
    • (2003) Proc Natl Acad Sci U S A , vol.100 , pp. 10020-10025
    • Dufresne, A.1    Salanoubat, M.2    Partensky, F.3    Artiguenave, F.4    Axmann, I.M.5
  • 9
    • 33748614882 scopus 로고    scopus 로고
    • Genome sequence of Synechococcus CC9311: Insights into adaptation to a coastal environment
    • Palenik B, Ren Q, Dupont CL, Myers GS, Heidelberg JF, et al. (2006) Genome sequence of Synechococcus CC9311: insights into adaptation to a coastal environment. Proc Natl Acad Sci U S A 103: 13555-13559.
    • (2006) Proc Natl Acad Sci U S A , vol.103 , pp. 13555-13559
    • Palenik, B.1    Ren, Q.2    Dupont, C.L.3    Myers, G.S.4    Heidelberg, J.F.5
  • 10
    • 0036075758 scopus 로고    scopus 로고
    • Utilization of different nitrogen sources by the marine cyanobacteria, Prochlorococcus and Synechococcus
    • Moore LR, Goericke RE, Chisholm SW (2002) Utilization of different nitrogen sources by the marine cyanobacteria, Prochlorococcus and Synechococcus. Limnol Oceanogr 47: 989-996.
    • (2002) Limnol Oceanogr , vol.47 , pp. 989-996
    • Moore, L.R.1    Goericke, R.E.2    Chisholm, S.W.3
  • 11
    • 33747621641 scopus 로고    scopus 로고
    • Phosphate acquisition genes in Prochlorococcus ecotypes: Evidence for genome-wide adaptation
    • Martiny AC, Coleman ML, Chisholm SW (2006) Phosphate acquisition genes in Prochlorococcus ecotypes: evidence for genome-wide adaptation. Proc Natl Acad Sci U S A 103: 12552-12557.
    • (2006) Proc Natl Acad Sci U S A , vol.103 , pp. 12552-12557
    • Martiny, A.C.1    Coleman, M.L.2    Chisholm, S.W.3
  • 13
    • 1342271382 scopus 로고    scopus 로고
    • From gene trees to organismal phylogeny in prokaryotes: The case of the gamma-proteobacteria
    • doi:10.1371/journal.pbio.0000019
    • Lerat E, Daubin V, Moran NA (2003) From gene trees to organismal phylogeny in prokaryotes: the case of the gamma-proteobacteria. PLoS Biol 1: e19. doi:10.1371/journal.pbio.0000019
    • (2003) PLoS Biol , vol.1
    • Lerat, E.1    Daubin, V.2    Moran, N.A.3
  • 14
    • 0033603539 scopus 로고    scopus 로고
    • Phylogenetic classification and the universal tree
    • Doolittle WF (1999) Phylogenetic classification and the universal tree. Science 284: 2124-2129.
    • (1999) Science , vol.284 , pp. 2124-2129
    • Doolittle, W.F.1
  • 15
    • 25444524604 scopus 로고    scopus 로고
    • Tettelin H, Masignani V, Cieslewicz MJ, Donati C, Medini D, et al. (2005) Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae: implications for the microbial pan-genome. Proc Natl Acad Sci U S A 102: 13950-13955.
    • Tettelin H, Masignani V, Cieslewicz MJ, Donati C, Medini D, et al. (2005) Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae: implications for the microbial "pan-genome." Proc Natl Acad Sci U S A 102: 13950-13955.
  • 18
    • 0036200876 scopus 로고    scopus 로고
    • Resolution of Prochlorococcus and Synechococcus ecotypes by using 16S-23S ribosomal DNA internal transcribed spacer sequences
    • Rocap G, Distel DL, Waterbury JB, Chisholm SW (2002) Resolution of Prochlorococcus and Synechococcus ecotypes by using 16S-23S ribosomal DNA internal transcribed spacer sequences. Appl Environ Microbiol 68: 1180-1191.
    • (2002) Appl Environ Microbiol , vol.68 , pp. 1180-1191
    • Rocap, G.1    Distel, D.L.2    Waterbury, J.B.3    Chisholm, S.W.4
  • 19
    • 0032950018 scopus 로고    scopus 로고
    • Photophysiology of the marine Cyanobacterium Prochlorococcus: Ecotypic differences among cultured isolates
    • Moore LR, Chisholm SW (1999) Photophysiology of the marine Cyanobacterium Prochlorococcus: ecotypic differences among cultured isolates. Limnol Oceanogr 44: 628-638.
    • (1999) Limnol Oceanogr , vol.44 , pp. 628-638
    • Moore, L.R.1    Chisholm, S.W.2
  • 20
    • 12044258998 scopus 로고
    • Photoacclimation of Prochlorococcus sp. (Prochlorophyta) strains Isolated from the North Atlantic and the Mediterranean Sea
    • Partensky F, Hoepffner N, Li W, Ulloa O, Vaulot D (1993) Photoacclimation of Prochlorococcus sp. (Prochlorophyta) strains Isolated from the North Atlantic and the Mediterranean Sea. Plant Physiol 101: 285-296.
    • (1993) Plant Physiol , vol.101 , pp. 285-296
    • Partensky, F.1    Hoepffner, N.2    Li, W.3    Ulloa, O.4    Vaulot, D.5
  • 22
    • 0030060509 scopus 로고    scopus 로고
    • High degree of genetic variation in Prochlorococcus (Prochlorophyta) revealed by RFLP analysis
    • Scanlan DJ, Hess WR, Partensky F, Vaulot D (1996) High degree of genetic variation in Prochlorococcus (Prochlorophyta) revealed by RFLP analysis. European Journal of Phycology 31: 1-9.
    • (1996) European Journal of Phycology , vol.31 , pp. 1-9
    • Scanlan, D.J.1    Hess, W.R.2    Partensky, F.3    Vaulot, D.4
  • 23
    • 25144518786 scopus 로고    scopus 로고
    • Genome evolution in bacteria: Order beneath chaos
    • Lawrence JG, Hendrickson H (2005) Genome evolution in bacteria: order beneath chaos. Curr Opin Microbiol 8: 572-578.
    • (2005) Curr Opin Microbiol , vol.8 , pp. 572-578
    • Lawrence, J.G.1    Hendrickson, H.2
  • 25
    • 20444442993 scopus 로고    scopus 로고
    • Identification of a vinyl reductase gene for chlorophyll synthesis in Arabidopsis thaliana and implications for the evolution of Prochlorococcus species
    • Nagata N, Tanaka R, Satoh S, Tanaka A (2005) Identification of a vinyl reductase gene for chlorophyll synthesis in Arabidopsis thaliana and implications for the evolution of Prochlorococcus species. Plant Cell 17: 233-240.
    • (2005) Plant Cell , vol.17 , pp. 233-240
    • Nagata, N.1    Tanaka, R.2    Satoh, S.3    Tanaka, A.4
  • 26
    • 0026531177 scopus 로고
    • Prochlorococcus marinus nov. gen. nov. sp.: An oxyphototrophic marine prokaryote containing divinyl chlorophyll a and b
    • Chisholm SW, Frankel SL, Goericke RE, Olson RJ, Palenik B, et al. (1992) Prochlorococcus marinus nov. gen. nov. sp.: an oxyphototrophic marine prokaryote containing divinyl chlorophyll a and b. Archives of Microbiology 157: 297-300.
    • (1992) Archives of Microbiology , vol.157 , pp. 297-300
    • Chisholm, S.W.1    Frankel, S.L.2    Goericke, R.E.3    Olson, R.J.4    Palenik, B.5
  • 27
    • 0032750636 scopus 로고    scopus 로고
    • Molybdopterin guanine dinucleotide cofactor in Synechococcus sp. nitrate reductase: Identification of mobA and isolation of a putative moeB gene
    • Rubio LM, Flores E, Herrero A (1999) Molybdopterin guanine dinucleotide cofactor in Synechococcus sp. nitrate reductase: identification of mobA and isolation of a putative moeB gene. FEBS Lett 462: 358-362.
    • (1999) FEBS Lett , vol.462 , pp. 358-362
    • Rubio, L.M.1    Flores, E.2    Herrero, A.3
  • 28
    • 0036320337 scopus 로고    scopus 로고
    • Purification, cofactor analysis, and site-directed mutagenesis of Synechococcus ferredoxin-nitrate reductase
    • Rubio LM, Flores E, Herrero A (2002) Purification, cofactor analysis, and site-directed mutagenesis of Synechococcus ferredoxin-nitrate reductase. Photosynth Res 72: 13-26.
    • (2002) Photosynth Res , vol.72 , pp. 13-26
    • Rubio, L.M.1    Flores, E.2    Herrero, A.3
  • 29
    • 33749468851 scopus 로고    scopus 로고
    • Forming the primary nitrite maximum: Nitrifiers or phytoplankton?
    • Lomas MW, Lipschultz F (2006) Forming the primary nitrite maximum: nitrifiers or phytoplankton? Limnol Oceanogr 51: 2453-2467.
    • (2006) Limnol Oceanogr , vol.51 , pp. 2453-2467
    • Lomas, M.W.1    Lipschultz, F.2
  • 30
    • 33748745026 scopus 로고    scopus 로고
    • The pathway tools cellular overview diagram and omics viewer
    • Paley SM, Karp PD (2006) The pathway tools cellular overview diagram and omics viewer. Nucleic Acids Res 34: 3771-3778.
    • (2006) Nucleic Acids Res , vol.34 , pp. 3771-3778
    • Paley, S.M.1    Karp, P.D.2
  • 31
    • 0032548141 scopus 로고    scopus 로고
    • Niche adaptation in ocean cyanobacteria
    • Ferris MJ, Palenik B (1998) Niche adaptation in ocean cyanobacteria. Nature 396: 226-228.
    • (1998) Nature , vol.396 , pp. 226-228
    • Ferris, M.J.1    Palenik, B.2
  • 33
    • 0242365676 scopus 로고    scopus 로고
    • Genome-scale approaches to resolving incongruence in molecular phylogenies
    • Rokas A, Williams BL, King N, Carroll SB (2003) Genome-scale approaches to resolving incongruence in molecular phylogenies. Nature 425: 798-804.
    • (2003) Nature , vol.425 , pp. 798-804
    • Rokas, A.1    Williams, B.L.2    King, N.3    Carroll, S.B.4
  • 34
    • 0032900532 scopus 로고    scopus 로고
    • Genome phylogeny based on gene content
    • Snel B, Bork P, Huynen MA (1999) Genome phylogeny based on gene content. Nat Genet 21: 108-110.
    • (1999) Nat Genet , vol.21 , pp. 108-110
    • Snel, B.1    Bork, P.2    Huynen, M.A.3
  • 35
    • 2942622384 scopus 로고    scopus 로고
    • Algorithms for computing parsimonious evolutionary scenarios for genome evolution, the last universal common ancestor, and dominance of horizontal gene transfer in the evolution of prokaryotes
    • Mirkin BG, Fenner TI, Galperin MY, Koonin EV (2003) Algorithms for computing parsimonious evolutionary scenarios for genome evolution, the last universal common ancestor, and dominance of horizontal gene transfer in the evolution of prokaryotes. BMC Evol Biol 3: 2.
    • (2003) BMC Evol Biol , vol.3 , pp. 2
    • Mirkin, B.G.1    Fenner, T.I.2    Galperin, M.Y.3    Koonin, E.V.4
  • 37
    • 33644961434 scopus 로고    scopus 로고
    • Measurement of Prochlorococcus ecotypes using real-time polymerase chain reaction reveals different abundances of genotypes with similar light physiologies
    • Ahlgren NA, Rocap G, Chisholm SW (2006) Measurement of Prochlorococcus ecotypes using real-time polymerase chain reaction reveals different abundances of genotypes with similar light physiologies. Environ Microbiol 8: 441-454.
    • (2006) Environ Microbiol , vol.8 , pp. 441-454
    • Ahlgren, N.A.1    Rocap, G.2    Chisholm, S.W.3
  • 38
    • 0029109040 scopus 로고    scopus 로고
    • Moore LR, R. G, S. W. C (1995) Comparative physiology of Synechococcus and Prochlorococcus: influence of light and temperature on growth, pigments, fluorescence and absorptive properties. Marine Ecology Progress Series 116: 259-275.
    • Moore LR, R. G, S. W. C (1995) Comparative physiology of Synechococcus and Prochlorococcus: influence of light and temperature on growth, pigments, fluorescence and absorptive properties. Marine Ecology Progress Series 116: 259-275.
  • 39
    • 33645216333 scopus 로고    scopus 로고
    • Niche partitioning among Prochlorococcus ecotypes along ocean-scale environmental gradients
    • Johnson ZI, Zinser ER, Coe A, McNulty NP, Woodward EM, et al. (2006) Niche partitioning among Prochlorococcus ecotypes along ocean-scale environmental gradients. Science 311: 1737-1740.
    • (2006) Science , vol.311 , pp. 1737-1740
    • Johnson, Z.I.1    Zinser, E.R.2    Coe, A.3    McNulty, N.P.4    Woodward, E.M.5
  • 40
    • 35349008554 scopus 로고    scopus 로고
    • Influence of light and temperature on Prochlorococcus ecotype distribution in the Atlantic Ocean
    • Zinser ER, Johnson ZI, Coe A, Karaca E, Veneziano D, et al. (2007) Influence of light and temperature on Prochlorococcus ecotype distribution in the Atlantic Ocean. Limnol Oceanogr 52: 2205-2220.
    • (2007) Limnol Oceanogr , vol.52 , pp. 2205-2220
    • Zinser, E.R.1    Johnson, Z.I.2    Coe, A.3    Karaca, E.4    Veneziano, D.5
  • 41
    • 33646551799 scopus 로고    scopus 로고
    • Oceanographic basis of the global surface distribution of Prochlorococcus ecotypes
    • Bouman HA, Ulloa O, Scanlan DJ, Zwirglmaier K, Li WK, et al. (2006) Oceanographic basis of the global surface distribution of Prochlorococcus ecotypes. Science 312: 918-921.
    • (2006) Science , vol.312 , pp. 918-921
    • Bouman, H.A.1    Ulloa, O.2    Scanlan, D.J.3    Zwirglmaier, K.4    Li, W.K.5
  • 42
    • 0034916894 scopus 로고    scopus 로고
    • Closely related Prochlorococcus genotypes show remarkably different depth distributions in two oceanic regions as revealed by in situ hybridization using 16S rRNA-targeted oligonucleotides
    • West NJ, Schonhuber WA, Fuller NJ, Amann RI, Rippka R, et al. (2001) Closely related Prochlorococcus genotypes show remarkably different depth distributions in two oceanic regions as revealed by in situ hybridization using 16S rRNA-targeted oligonucleotides. Microbiology 147: 1731-1744.
    • (2001) Microbiology , vol.147 , pp. 1731-1744
    • West, N.J.1    Schonhuber, W.A.2    Fuller, N.J.3    Amann, R.I.4    Rippka, R.5
  • 43
    • 33750741940 scopus 로고    scopus 로고
    • Global gene expression of Prochlorococcus ecotypes in response to changes in nitrogen availability
    • Tolonen AC, Aach J, Lindell D, Johnson ZI, Rector T, et al. (2006) Global gene expression of Prochlorococcus ecotypes in response to changes in nitrogen availability. Mol Syst Biol 2: 53.
    • (2006) Mol Syst Biol , vol.2 , pp. 53
    • Tolonen, A.C.1    Aach, J.2    Lindell, D.3    Johnson, Z.I.4    Rector, T.5
  • 44
    • 34548513271 scopus 로고    scopus 로고
    • Genome-wide expression dynamics of a marine virus and host reveal features of co-evolution
    • Lindell D, Jaffe JD, Coleman ML, Futschik ME, Axmann IM, et al. (2007) Genome-wide expression dynamics of a marine virus and host reveal features of co-evolution. Nature 449: 83-86.
    • (2007) Nature , vol.449 , pp. 83-86
    • Lindell, D.1    Jaffe, J.D.2    Coleman, M.L.3    Futschik, M.E.4    Axmann, I.M.5
  • 45
    • 0036924517 scopus 로고    scopus 로고
    • The complete genomic sequence of Mycoplasma penetrans, an intracellular bacterial pathogen in humans
    • Sasaki Y, Ishikawa J, Yamashita A, Oshima K, Kenri T, et al. (2002) The complete genomic sequence of Mycoplasma penetrans, an intracellular bacterial pathogen in humans. Nucleic Acids Res 30: 5293-5300.
    • (2002) Nucleic Acids Res , vol.30 , pp. 5293-5300
    • Sasaki, Y.1    Ishikawa, J.2    Yamashita, A.3    Oshima, K.4    Kenri, T.5
  • 46
    • 1342283001 scopus 로고    scopus 로고
    • Characterization of two kinases involved in thiamine pyrophosphate and pyridoxal phosphate biosynthesis in Bacillus subtilis: 4-amino-5-hydroxymethyl-2methylpyrimidine kinase and pyridoxal kinase
    • Park JH, Burns K, Kinsland C, Begley TP (2004) Characterization of two kinases involved in thiamine pyrophosphate and pyridoxal phosphate biosynthesis in Bacillus subtilis: 4-amino-5-hydroxymethyl-2methylpyrimidine kinase and pyridoxal kinase. J Bacteriol 186: 1571-1573.
    • (2004) J Bacteriol , vol.186 , pp. 1571-1573
    • Park, J.H.1    Burns, K.2    Kinsland, C.3    Begley, T.P.4
  • 47
    • 14044270800 scopus 로고    scopus 로고
    • Structural characterization of the regulatory proteins TenA and TenI from Bacillus subtilis and identification of TenA as a thiaminase II
    • Toms AV, Haas AL, Park JH, Begley TP, Ealick SE (2005) Structural characterization of the regulatory proteins TenA and TenI from Bacillus subtilis and identification of TenA as a thiaminase II. Biochemistry 44: 2319-2329.
    • (2005) Biochemistry , vol.44 , pp. 2319-2329
    • Toms, A.V.1    Haas, A.L.2    Park, J.H.3    Begley, T.P.4    Ealick, S.E.5
  • 48
    • 0035706612 scopus 로고    scopus 로고
    • The photosynthetic apparatus of Prochlorococcus: Insights through comparative genomics
    • Hess WR, Rocap G, Ting CS, Larimer F, Stilwagen S, et al. (2001) The photosynthetic apparatus of Prochlorococcus: insights through comparative genomics. Photosynth Res 70: 53-71.
    • (2001) Photosynth Res , vol.70 , pp. 53-71
    • Hess, W.R.1    Rocap, G.2    Ting, C.S.3    Larimer, F.4    Stilwagen, S.5
  • 49
    • 0141459689 scopus 로고    scopus 로고
    • Photophysical properties of Prochlorococcus marinus SS120 divinyl chlorophylls and phycoerythrin in vitro and in vivo
    • Steglich C, Mullineaux CW, Teuchner K, Hess WR, Lokstein H (2003) Photophysical properties of Prochlorococcus marinus SS120 divinyl chlorophylls and phycoerythrin in vitro and in vivo. FEBS Lett 553: 79-84.
    • (2003) FEBS Lett , vol.553 , pp. 79-84
    • Steglich, C.1    Mullineaux, C.W.2    Teuchner, K.3    Hess, W.R.4    Lokstein, H.5
  • 50
    • 25144513583 scopus 로고    scopus 로고
    • A green lightabsorbing phycoerythrin is present in the high-light-adapted marine cyanobacterium Prochlorococcus sp. MED4
    • Steglich C, Frankenberg-Dinkel N, Penno S, Hess WR (2005) A green lightabsorbing phycoerythrin is present in the high-light-adapted marine cyanobacterium Prochlorococcus sp. MED4. Environ Microbiol 7: 1611-1618.
    • (2005) Environ Microbiol , vol.7 , pp. 1611-1618
    • Steglich, C.1    Frankenberg-Dinkel, N.2    Penno, S.3    Hess, W.R.4
  • 51
    • 0037313141 scopus 로고    scopus 로고
    • High rate of uptake of organic nitrogen compounds by Prochlorococcus cyanobacteria as a key to their dominance in oligotrophic oceanic waters
    • Zubkov MV, Fuchs BM, Tarran GA, Burkill PH, Amann R (2003) High rate of uptake of organic nitrogen compounds by Prochlorococcus cyanobacteria as a key to their dominance in oligotrophic oceanic waters. Appl Environ Microbiol 69: 1299-1304.
    • (2003) Appl Environ Microbiol , vol.69 , pp. 1299-1304
    • Zubkov, M.V.1    Fuchs, B.M.2    Tarran, G.A.3    Burkill, P.H.4    Amann, R.5
  • 53
    • 28044436397 scopus 로고    scopus 로고
    • Accelerated evolution associated with genome reduction in a free-living prokaryote
    • Dufresne A, Garczarek L, Partensky F (2005) Accelerated evolution associated with genome reduction in a free-living prokaryote. Genome Biol 6: R14.
    • (2005) Genome Biol , vol.6
    • Dufresne, A.1    Garczarek, L.2    Partensky, F.3
  • 54
    • 0345059877 scopus 로고    scopus 로고
    • The presence of glutamate dehydrogenase is a selective advantage for the Cyanobacterium Synechocystis sp. strain PCC 6803 under nonexponential growth conditions
    • Chavez S, Lucena JM, Reyes JC, Florencio FJ, Candau P (1999) The presence of glutamate dehydrogenase is a selective advantage for the Cyanobacterium Synechocystis sp. strain PCC 6803 under nonexponential growth conditions. J Bacteriol 181: 808-813.
    • (1999) J Bacteriol , vol.181 , pp. 808-813
    • Chavez, S.1    Lucena, J.M.2    Reyes, J.C.3    Florencio, F.J.4    Candau, P.5
  • 56
    • 33644868116 scopus 로고    scopus 로고
    • Prochlorococcus ecotype abundances in the North Atlantic Ocean as revealed by an improved quantitative PCR method
    • Zinser ER, Coe A, Johnson ZI, Martiny AC, Fuller NJ, et al. (2006) Prochlorococcus ecotype abundances in the North Atlantic Ocean as revealed by an improved quantitative PCR method. Appl Environ Microbiol 72: 723-732.
    • (2006) Appl Environ Microbiol , vol.72 , pp. 723-732
    • Zinser, E.R.1    Coe, A.2    Johnson, Z.I.3    Martiny, A.C.4    Fuller, N.J.5
  • 57
    • 28444475529 scopus 로고    scopus 로고
    • Adaptive evolution of bacterial metabolic networks by horizontal gene transfer
    • Pal C, Papp B, Lercher MJ (2005) Adaptive evolution of bacterial metabolic networks by horizontal gene transfer. Nat Genet 37: 1372-1375.
    • (2005) Nat Genet , vol.37 , pp. 1372-1375
    • Pal, C.1    Papp, B.2    Lercher, M.J.3
  • 58
    • 0041363271 scopus 로고    scopus 로고
    • Low-light-adapted Prochlorococcus species possess specific antennae for each photosystem
    • Bibby TS, Mary I, Nield J, Partensky F, Barber J (2003) Low-light-adapted Prochlorococcus species possess specific antennae for each photosystem. Nature 424: 1051-1054.
    • (2003) Nature , vol.424 , pp. 1051-1054
    • Bibby, T.S.1    Mary, I.2    Nield, J.3    Partensky, F.4    Barber, J.5
  • 59
    • 33747369803 scopus 로고    scopus 로고
    • Prevalence and evolution of core photosystem II genes in marine cyanobacterial viruses and their hosts
    • doi:10.1371/journal.pbio.0040234
    • Sullivan MB, Lindell D, Lee JA, Thompson LR, Bielawski JP, et al. (2006) Prevalence and evolution of core photosystem II genes in marine cyanobacterial viruses and their hosts. PLoS Biol 4: e234. doi:10.1371/journal.pbio.0040234
    • (2006) PLoS Biol , vol.4
    • Sullivan, M.B.1    Lindell, D.2    Lee, J.A.3    Thompson, L.R.4    Bielawski, J.P.5
  • 60
    • 33645232361 scopus 로고    scopus 로고
    • Genomic islands and the ecology and evolution of Prochlorococcus
    • Coleman ML, Sullivan MB, Martiny AC, Steglich C, Barry K, et al. (2006) Genomic islands and the ecology and evolution of Prochlorococcus. Science 311: 1768-1770.
    • (2006) Science , vol.311 , pp. 1768-1770
    • Coleman, M.L.1    Sullivan, M.B.2    Martiny, A.C.3    Steglich, C.4    Barry, K.5
  • 61
    • 0041851885 scopus 로고    scopus 로고
    • Photoinhibition: A historical perspective
    • Adir N, Zer H, Shochat S, Ohad I (2003) Photoinhibition: a historical perspective. Photosynth Res 76: 343-370.
    • (2003) Photosynth Res , vol.76 , pp. 343-370
    • Adir, N.1    Zer, H.2    Shochat, S.3    Ohad, I.4
  • 62
    • 11144354360 scopus 로고    scopus 로고
    • Venter JC, Remington K, Heidelberg JF, Halpern AL, Rusch D, et al. (2004) Environmental genome shotgun sequencing of the Sargasso Sea. Science 304: 66-74.
    • Venter JC, Remington K, Heidelberg JF, Halpern AL, Rusch D, et al. (2004) Environmental genome shotgun sequencing of the Sargasso Sea. Science 304: 66-74.
  • 63
    • 31544483932 scopus 로고    scopus 로고
    • Community genomics among stratified microbial assemblages in the ocean's interior
    • DeLong EF, Preston CM, Mincer T, Rich V, Hallam SJ, et al. (2006) Community genomics among stratified microbial assemblages in the ocean's interior. Science 311: 496-503.
    • (2006) Science , vol.311 , pp. 496-503
    • DeLong, E.F.1    Preston, C.M.2    Mincer, T.3    Rich, V.4    Hallam, S.J.5
  • 64
    • 33947238287 scopus 로고    scopus 로고
    • The Sorcerer II Global Ocean Sampling Expedition: Northwest Atlantic through Eastern Tropical Pacific
    • doi:10.1371/journal.pbio. 0050016
    • Rusch DB, Halpern AL, Sutton G, Heidelberg KB, Williamson S, et al. (2007) The Sorcerer II Global Ocean Sampling Expedition: Northwest Atlantic through Eastern Tropical Pacific. PLoS Biol 5: e77. doi:10.1371/journal.pbio. 0050016
    • (2007) PLoS Biol , vol.5
    • Rusch, D.B.1    Halpern, A.L.2    Sutton, G.3    Heidelberg, K.B.4    Williamson, S.5
  • 65
    • 4544371669 scopus 로고    scopus 로고
    • Determination of the core of a minimal bacterial gene set
    • Gil R, Silva FJ, Pereto J, Moya A (2004) Determination of the core of a minimal bacterial gene set. Microbiol Mol Biol Rev 68: 518-537.
    • (2004) Microbiol Mol Biol Rev , vol.68 , pp. 518-537
    • Gil, R.1    Silva, F.J.2    Pereto, J.3    Moya, A.4
  • 67
    • 33746605947 scopus 로고    scopus 로고
    • A Sanger/pyrosequencing hybrid approach for the generation of high-quality draft assemblies of marine microbial genomes
    • Goldberg SM, Johnson J, Busam D, Feldblyum T, Ferriera S, et al. (2006) A Sanger/pyrosequencing hybrid approach for the generation of high-quality draft assemblies of marine microbial genomes. Proc Natl Acad Sci U S A 103: 11240-11245.
    • (2006) Proc Natl Acad Sci U S A , vol.103 , pp. 11240-11245
    • Goldberg, S.M.1    Johnson, J.2    Busam, D.3    Feldblyum, T.4    Ferriera, S.5
  • 68
    • 0032900737 scopus 로고    scopus 로고
    • CRITICA: Coding region identification tool invoking comparative analysis
    • Badger JH, Olsen GJ (1999) CRITICA: coding region identification tool invoking comparative analysis. Mol Biol Evol 16: 512-524.
    • (1999) Mol Biol Evol , vol.16 , pp. 512-524
    • Badger, J.H.1    Olsen, G.J.2
  • 71
    • 37749054914 scopus 로고    scopus 로고
    • Swofford DL (2003) PAUP*. Phylogenetic Analysis Using Parsimony *and Other Methods, Version 4. 4 ed. Sunderland, Massachusetts: Sinauer Associates
    • Swofford DL (2003) PAUP*. Phylogenetic Analysis Using Parsimony (*and Other Methods). Version 4. 4 ed. Sunderland, Massachusetts: Sinauer Associates.
  • 72
    • 12444346818 scopus 로고    scopus 로고
    • From annotated genomes to metabolic flux models and kinetic parameter fitting
    • Segre D, Zucker J, Katz J, Lin X, D'Haeseleer P, et al. (2003) From annotated genomes to metabolic flux models and kinetic parameter fitting. Omics 7: 301-316.
    • (2003) Omics , vol.7 , pp. 301-316
    • Segre, D.1    Zucker, J.2    Katz, J.3    Lin, X.4    D'Haeseleer, P.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.